AlfalfaGEDB | MsG0580024952.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024952.01

KEGG: -
GO: GO:0016021
PFAM: PF01925

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024952.01.T01	XP_004512029.1	78.484	488	67	3	19	471	38	522	0	669

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024952.01.T01	Q8L7A0	57.479	468	148	5	52	469	6	472	1.41E-167	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024952.01.T01	G7ZW19	88.723	470	12	2	43	471	1	470	0.0	816

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048660.01	MsG0580024952.01	0.825913	3.617248e-54	3.342110e-51
MsG0180000129.01	MsG0580024952.01	0.830395	3.009464e-55	3.166720e-52
MsG0180001002.01	MsG0580024952.01	0.800622	1.321763e-48	6.183328e-46
MsG0180003403.01	MsG0580024952.01	0.821001	5.092396e-53	4.093345e-50
MsG0180004493.01	MsG0580024952.01	0.826339	2.863618e-54	2.678099e-51
MsG0180004759.01	MsG0580024952.01	-0.805722	1.163594e-49	6.201597e-47
MsG0280006592.01	MsG0580024952.01	0.858431	8.277780e-63	2.112236e-59
MsG0280006601.01	MsG0580024952.01	0.804320	2.286355e-49	1.175259e-46
MsG0280007575.01	MsG0580024952.01	0.803506	3.374315e-49	1.698707e-46
MsG0280008899.01	MsG0580024952.01	0.841085	5.885542e-58	8.552012e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024952.01.T01	MTR_5g019950	88.723	470	12	2	43	471	1	470	0.0	816
MsG0580024952.01.T01	MTR_8g077830	67.647	476	99	4	39	471	4	467	0.0	571
MsG0580024952.01.T01	MTR_3g109950	59.649	456	144	5	54	469	11	466	3.59e-172	492
MsG0580024952.01.T01	MTR_3g109950	58.891	433	138	5	54	446	11	443	2.87e-156	451
MsG0580024952.01.T01	MTR_8g088080	56.264	439	140	4	76	470	44	474	4.79e-134	395
MsG0580024952.01.T01	MTR_8g088070	56.835	417	132	4	99	469	54	468	9.14e-131	387
MsG0580024952.01.T01	MTR_3g109950	56.848	387	127	5	54	400	11	397	9.24e-131	385
MsG0580024952.01.T01	MTR_1g026910	46.320	462	189	6	53	469	8	455	9.76e-121	360
MsG0580024952.01.T01	MTR_1g026910	46.809	423	170	5	69	446	20	432	6.06e-108	327
MsG0580024952.01.T01	MTR_7g103300	48.184	413	165	3	106	471	51	461	1.76e-107	327

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024952.01.T01	AT2G25737	57.479	468	148	5	52	469	6	472	1.44e-168	483
MsG0580024952.01.T01	AT2G25737	55.963	327	102	3	83	368	46	371	2.55e-109	328
MsG0580024952.01.T01	AT2G36630	46.778	419	174	3	100	471	42	458	1.90e-105	322
MsG0580024952.01.T01	AT1G11540	32.626	377	200	9	142	469	79	450	4.72e-42	155
MsG0580024952.01.T01	AT1G11540	32.796	372	196	9	147	469	1	367	1.00e-41	152
MsG0580024952.01.T01	AT1G61740	28.537	410	241	8	110	469	51	458	1.62e-36	140
MsG0580024952.01.T01	AT4G21250	30.097	412	232	8	106	469	46	449	3.89e-35	136
MsG0580024952.01.T01	AT4G21260	26.437	435	249	10	55	469	10	393	3.12e-30	121

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Find 107 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATTTACCGTAAGGTA+CGG	0.540610	5:-12046634	None:intergenic
AACAAGAGTGATTAAATCAA+AGG	0.473487	5:+12045774	MsG0580024952.01.T01:CDS
AACAATCTGAACAATTAGAA+AGG	0.520405	5:-12045244	None:intergenic
AACTATTTACCGTAAGGTAC+GGG	0.449928	5:-12046633	None:intergenic
AAGCAATGGTTGATTTCTTA+TGG	0.158207	5:+12043457	MsG0580024952.01.T01:CDS
AAGCCCCTACCAAAGGGTCC+AGG	0.559115	5:+12045047	MsG0580024952.01.T01:CDS
ACAAGAGTGATTAAATCAAA+GGG	0.507110	5:+12045775	MsG0580024952.01.T01:CDS
ACACATGGCAACAAAATCTT+TGG	0.304038	5:+12043308	MsG0580024952.01.T01:CDS
ACTATTTACCGTAAGGTACG+GGG	0.686757	5:-12046632	None:intergenic
ACTGATTGCACTTATGAAGA+TGG	0.531468	5:-12047028	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATTTACCGTAAGGTA+CGG	-	Chr5:12046637-12046656	None:intergenic	30.0%
AATACAAGATGAAGTGGTAA+TGG	+	Chr5:12045073-12045092	MsG0580024952.01.T01:intron	30.0%
AATTAAACATGTGCTTGGTA+AGG	-	Chr5:12045659-12045678	None:intergenic	30.0%
AGCAGGAAATGAAATTTGAT+TGG	+	Chr5:12043635-12043654	MsG0580024952.01.T01:intron	30.0%
AGCTAAAATAAGTTGTAAGC+TGG	+	Chr5:12044900-12044919	MsG0580024952.01.T01:intron	30.0%
AGGCATAAATACATGGAAAA+AGG	+	Chr5:12044581-12044600	MsG0580024952.01.T01:intron	30.0%
AGGGAAAGGAAGTTAAAAAT+TGG	+	Chr5:12045794-12045813	MsG0580024952.01.T01:CDS	30.0%
AGTGATAACCTATTATGGTT+TGG	+	Chr5:12044481-12044500	MsG0580024952.01.T01:intron	30.0%
AGTGATTAAATCAAAGGGAA+AGG	+	Chr5:12045780-12045799	MsG0580024952.01.T01:CDS	30.0%
ATCACTTCTTGTCTATGTTT+GGG	+	Chr5:12045218-12045237	MsG0580024952.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	12043028	12047244	12043028	ID=MsG0580024952.01;Name=MsG0580024952.01
Chr5	mRNA	12043028	12047244	12043028	ID=MsG0580024952.01.T01;Parent=MsG0580024952.01;Name=MsG0580024952.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|0.90\|0.8\|0.72\|11\|0\|471
Chr5	exon	12043028	12043073	12043028	ID=MsG0580024952.01.T01:exon:588;Parent=MsG0580024952.01.T01
Chr5	exon	12043232	12043515	12043232	ID=MsG0580024952.01.T01:exon:589;Parent=MsG0580024952.01.T01
Chr5	exon	12043640	12043799	12043640	ID=MsG0580024952.01.T01:exon:590;Parent=MsG0580024952.01.T01
Chr5	exon	12043963	12044163	12043963	ID=MsG0580024952.01.T01:exon:591;Parent=MsG0580024952.01.T01
Chr5	exon	12045039	12045088	12045039	ID=MsG0580024952.01.T01:exon:592;Parent=MsG0580024952.01.T01
Chr5	exon	12045183	12045269	12045183	ID=MsG0580024952.01.T01:exon:593;Parent=MsG0580024952.01.T01
Chr5	exon	12045576	12045626	12045576	ID=MsG0580024952.01.T01:exon:594;Parent=MsG0580024952.01.T01
Chr5	exon	12045721	12045942	12045721	ID=MsG0580024952.01.T01:exon:595;Parent=MsG0580024952.01.T01
Chr5	exon	12046552	12046645	12046552	ID=MsG0580024952.01.T01:exon:596;Parent=MsG0580024952.01.T01
Chr5	exon	12046914	12047054	12046914	ID=MsG0580024952.01.T01:exon:597;Parent=MsG0580024952.01.T01
Chr5	exon	12047165	12047244	12047165	ID=MsG0580024952.01.T01:exon:598;Parent=MsG0580024952.01.T01
Chr5	CDS	12043028	12043073	12043028	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12043232	12043515	12043232	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12043640	12043799	12043640	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12043963	12044163	12043963	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12045039	12045088	12045039	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12045183	12045269	12045183	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12045576	12045626	12045576	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12045721	12045942	12045721	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12046552	12046645	12046552	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12046914	12047054	12046914	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01
Chr5	CDS	12047165	12047244	12047165	ID=MsG0580024952.01.T01:cds;Parent=MsG0580024952.01.T01

Gene Sequence

>MsG0580024952.01.T01

ATGTGTGTTAAAGAATGTGTTACTAACCTTATATGCTATCTTAATAGAAAGTGGAATACAACATTGTTCTTAAATCATCATAACATTTATCCTAGATTTCCATCCCTAGTTTCTCACATTCCACACATGGCAACAAAATCTTTGGTTACTGCAGCAACATGGCTGATCGTGTGTATCCTTGTTGTGATCTGCAATGTCAGTTTAGCTGAAAGAGTTTTGAAAGAAAAAGAACCGGCAAAGTTTGTTGAGAAACAAACGAAAGGATTTCTAAAAGCAATGGTTGATTTCTTATGGGAAAGTGGAAAGTCTTCTTATGAACCTGTTTGGCCTGAAATGAAATTTGATTGGAAAATTATAGTGGGATCAATCGTTGGATTTTTGGGAGCAGCTTTGGGAAGTGTTGGAGGTGTAGGAGGTGGTGGAATTTTTGTCCCTATGCTTGCTTTGATCATTGGCTTTGATCCCAAGTCTTCTACAGCCATTTCCAAGTGTATGATTATGGGTGCAGCATTATCAACTGTTTACTACAATATGAGGCTTAGAAACCCAACACTAGACATGCCACTTATAGATTATGATTTGGCTTTGCTTTTCCAGCCTATGCTGATGCTTGGAATAAGTATTGGAGTTGTTTGTAATGTCATGTTTGCTGATTGGATGGTCACAGTTTTACTCATCATCTTATTCATAGAAGACTACAAGCCCCTACCAAAGGGTCCAGGTGAAATACAAGATGAAGTGGTGCCTTTGCTGAAGAACATTTATTGGAAAGAATTATCACTTCTTGTCTATGTTTGGGTGGCCTTTCTAATTGTTCAGATTGTTAAGACATACACTAAGACTTGCTCCATTGAGTATTGGATTCTTAATTTCTTGCAGGTTCCTATTGCTATCTCTGTTACAGTTTTTGAAGCTGTATGCATATACAAAGGAACAAGAGTGATTAAATCAAAGGGAAAGGAAGTTAAAAATTGGAAGATTTATCAAATTTTGCTATATTGTTTATGTGGAGTAATGGCTGGTATGGTTGGAGGGTTGCTTGGTCTAGGAGGTGGCTTCATTTTGGGGCCACTGTTTCTAGAAATGGGAATTCCTCCGCAGGTAGCAAGTGCTACATCAACTTTTTCCATGCTTTTTTCATCCTCTATGTCGGTAGTGCAATATTACTATTTAGATCGCTTCCCCGTACCTTACGCTTCATACTTTGTTTTGGTTGCAACCATAGCTGCATTTGCTGGCCAGCATGTGGTGAGAAGGATAATTGCAATCCTTGGTCGTGCATCAATTATTATCTTCATACTAGCATCGACCATCTTCATAAGTGCAATCAGTTTAGGTGGAGTAGGAATAGAGAACATGATTGTGAAGTTGGAAAATCATGAGTATATGGGGTTTGAAAATCTTTGCACTCAATAA

Protein sequence

>MsG0580024952.01.T01

MCVKECVTNLICYLNRKWNTTLFLNHHNIYPRFPSLVSHIPHMATKSLVTAATWLIVCILVVICNVSLAERVLKEKEPAKFVEKQTKGFLKAMVDFLWESGKSSYEPVWPEMKFDWKIIVGSIVGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISKCMIMGAALSTVYYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVVCNVMFADWMVTVLLIILFIEDYKPLPKGPGEIQDEVVPLLKNIYWKELSLLVYVWVAFLIVQIVKTYTKTCSIEYWILNFLQVPIAISVTVFEAVCIYKGTRVIKSKGKEVKNWKIYQILLYCLCGVMAGMVGGLLGLGGGFILGPLFLEMGIPPQVASATSTFSMLFSSSMSVVQYYYLDRFPVPYASYFVLVATIAAFAGQHVVRRIIAILGRASIIIFILASTIFISAISLGGVGIENMIVKLENHEYMGFENLCTQ*