AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046700.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046700.01.T01 MTR_4g006560 96.269 134 5 0 82 215 76 209 2.19e-93 273
MsG0880046700.01.T01 MTR_1g013120 43.382 136 74 3 81 214 71 205 9.56e-35 123
MsG0880046700.01.T01 MTR_5g080880 40.132 152 75 4 73 209 72 222 7.27e-23 94.4
MsG0880046700.01.T01 MTR_4g124030 89.130 46 5 0 33 78 760 805 2.62e-19 86.3
MsG0880046700.01.T01 MTR_7g063520 36.434 129 70 4 89 209 97 221 1.76e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046700.01.T01 AT1G15870 57.971 138 55 2 79 215 79 214 2.13e-54 174
MsG0880046700.01.T01 AT1G80720 58.394 137 52 3 80 214 28 161 1.49e-48 157
MsG0880046700.01.T01 AT1G80720 58.394 137 52 3 80 214 80 213 3.76e-48 158
MsG0880046700.01.T01 AT4G31930 43.382 136 74 3 81 214 72 206 3.14e-31 114
MsG0880046700.01.T01 AT3G55605 37.405 131 72 3 89 210 97 226 5.13e-18 80.1
MsG0880046700.01.T01 AT2G39795 34.959 123 78 1 89 209 95 217 1.11e-16 76.6
MsG0880046700.01.T01 AT5G02050 35.484 124 71 3 96 210 112 235 6.42e-16 74.7
MsG0880046700.01.T01 AT1G29940 75.556 45 11 0 33 77 742 786 3.75e-14 71.2
MsG0880046700.01.T01 AT5G05990 29.286 140 84 2 89 213 91 230 3.00e-13 67.4

Find 46 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAGATATTGACAATTA+AGG 0.236484 8:-76971561 None:intergenic
ATTTGCCAATGAAAACATTA+AGG 0.265158 8:+76971451 MsG0880046700.01.T01:CDS
GGATAGTCTTTACAATTTCT+TGG 0.312697 8:+76972049 MsG0880046700.01.T01:CDS
GTTGATTCCTTACAGGGAAT+TGG 0.321303 8:+76972013 MsG0880046700.01.T01:intron
CAGACAATATAGTTATAAAA+AGG 0.321455 8:+76971624 MsG0880046700.01.T01:CDS
CATGTACTGATGCAACTATT+TGG 0.332781 8:-76972099 None:intergenic
TTTACAATTTCTTGGAAGTA+AGG 0.358452 8:+76972057 MsG0880046700.01.T01:CDS
GTTGAAGTCACCATGTTTGA+TGG 0.365879 8:+76971473 MsG0880046700.01.T01:CDS
AAACGCTATCGTTGCAGTTC+TGG 0.366963 8:+76970750 MsG0880046700.01.T01:CDS
GGAATTGGATGATGAGTTGC+AGG 0.386849 8:+76972028 MsG0880046700.01.T01:CDS
TAACATATGCAGATATGATA+TGG 0.397629 8:+76970848 MsG0880046700.01.T01:intron
AGATGACTTGTTTAGAATCA+TGG 0.427872 8:-76970877 None:intergenic
AAAAGACTCGTGTTGGTTTG+TGG 0.430549 8:+76969905 MsG0880046700.01.T01:CDS
AACATTGATGAATTTCCAAC+AGG 0.435304 8:+76970724 MsG0880046700.01.T01:CDS
GTTGCAGTTCTGGAATATAC+AGG 0.447601 8:+76970760 MsG0880046700.01.T01:CDS
AAAGACTCGTGTTGGTTTGT+GGG 0.458965 8:+76969906 MsG0880046700.01.T01:CDS
CAGCACATCACCATCTCCCT+TGG 0.476044 8:-76971579 None:intergenic
TGACCTAGCGGGAAGTTTCT+CGG 0.482686 8:+76969852 MsG0880046700.01.T01:CDS
AAGTAAACTTACTCAAAGTC+AGG 0.487021 8:-76971695 None:intergenic
TTGCAGCCTACTGACCAGTT+CGG 0.488598 8:+76971374 MsG0880046700.01.T01:CDS
TTACAATTTCTTGGAAGTAA+GGG 0.496688 8:+76972058 MsG0880046700.01.T01:CDS
CTCAAAGTCAGGACCAGCAT+AGG 0.500380 8:-76971684 None:intergenic
ACGATAGCGTTTGTGCCTGT+TGG 0.505518 8:-76970739 None:intergenic
TGGAAATCATGTGCTCTGCT+TGG 0.507101 8:+76971600 MsG0880046700.01.T01:CDS
AATGTAATCCATCGCTCACC+AGG 0.509396 8:-76971419 None:intergenic
CAAGGGAGATGGTGATGTGC+TGG 0.512354 8:+76971580 MsG0880046700.01.T01:CDS
GTCAATATCTCCAAGGGAGA+TGG 0.519549 8:+76971569 MsG0880046700.01.T01:CDS
CACGCTGAAAAGACTCGTGT+TGG 0.527171 8:+76969898 MsG0880046700.01.T01:CDS
ACTAGGATGGGTGACCTAGC+GGG 0.543930 8:+76969841 None:intergenic
ATGACAGCTGAGCCCTATGC+TGG 0.544341 8:+76971671 MsG0880046700.01.T01:CDS
TACAATTTCTTGGAAGTAAG+GGG 0.549007 8:+76972059 MsG0880046700.01.T01:CDS
CTTAATTGTCAATATCTCCA+AGG 0.564925 8:+76971562 MsG0880046700.01.T01:CDS
TCAAAGTCAGGACCAGCATA+GGG 0.570818 8:-76971683 None:intergenic
TTAATTGTCAATATCTCCAA+GGG 0.571494 8:+76971563 MsG0880046700.01.T01:CDS
TATATGCACTTGTGCAACGA+TGG 0.578881 8:-76970693 None:intergenic
TCTCGGAAAGCGTGCGAGTG+AGG 0.580534 8:+76969869 MsG0880046700.01.T01:CDS
TTTCCGAGAAACTTCCCGCT+AGG 0.585905 8:-76969855 None:intergenic
ATATGCACTTGTGCAACGAT+GGG 0.591577 8:-76970692 None:intergenic
AATGAACCGAACTGGTCAGT+AGG 0.594579 8:-76971380 None:intergenic
AAGACTCGTGTTGGTTTGTG+GGG 0.607170 8:+76969907 MsG0880046700.01.T01:CDS
ATGGCCGACCTGGTGAGCGA+TGG 0.612673 8:+76971411 MsG0880046700.01.T01:CDS
CATATGCAGATATGATATGG+AGG 0.628297 8:+76970851 MsG0880046700.01.T01:intron
TACTAGGATGGGTGACCTAG+CGG 0.631641 8:+76969840 None:intergenic
AGGAACAACTCCATCAAACA+TGG 0.637182 8:-76971483 None:intergenic
TAATCCATCGCTCACCAGGT+CGG 0.652064 8:-76971415 None:intergenic
TTGCAGTTCTGGAATATACA+GGG 0.659349 8:+76970761 MsG0880046700.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTAATAATAACAAAAA+GGG - Chr8:76970117-76970136 None:intergenic 10.0%
!! CTTTGTTAATAATAACAAAA+AGG - Chr8:76970118-76970137 None:intergenic 15.0%
!! TATAATATTCAAAACCAAAT+CGG + Chr8:76970551-76970570 MsG0880046700.01.T01:intron 15.0%
!! TTGTTAATAATAACAAAAAG+GGG - Chr8:76970116-76970135 None:intergenic 15.0%
!!! TAATCATTGTTGTTAAATTA+TGG + Chr8:76971747-76971766 MsG0880046700.01.T01:intron 15.0%
!! AATAATATTTGTTCCAATTC+GGG - Chr8:76971802-76971821 None:intergenic 20.0%
!! CAATAATATTTGTTCCAATT+CGG - Chr8:76971803-76971822 None:intergenic 20.0%
!! CAGACAATATAGTTATAAAA+AGG + Chr8:76971624-76971643 MsG0880046700.01.T01:CDS 20.0%
!! CTATAATGAGTTCAATATTT+CGG + Chr8:76970656-76970675 MsG0880046700.01.T01:intron 20.0%
!! TGTTAATAATAACAAAAAGG+GGG - Chr8:76970115-76970134 None:intergenic 20.0%
!! TTTGTAGACATGAATAATTA+GGG + Chr8:76971339-76971358 MsG0880046700.01.T01:intron 20.0%
!!! CTTTTTATAACTATATTGTC+TGG - Chr8:76971626-76971645 None:intergenic 20.0%
!!! TTTTGTAGACATGAATAATT+AGG + Chr8:76971338-76971357 MsG0880046700.01.T01:intron 20.0%
! AACTATATTGTTATACCTCA+TGG - Chr8:76970171-76970190 None:intergenic 25.0%
! AAGGAACTTAAATTGGATAA+AGG + Chr8:76970044-76970063 MsG0880046700.01.T01:intron 25.0%
! AGCTATAGTAATTGTTCTTT+AGG + Chr8:76970579-76970598 MsG0880046700.01.T01:intron 25.0%
! ATTTGCCAATGAAAACATTA+AGG + Chr8:76971451-76971470 MsG0880046700.01.T01:CDS 25.0%
! CGAATTGGAACAAATATTAT+TGG + Chr8:76971801-76971820 MsG0880046700.01.T01:intron 25.0%
! GGATAAAGGAACTTAAATTA+TGG + Chr8:76970058-76970077 MsG0880046700.01.T01:intron 25.0%
! TAACATATGCAGATATGATA+TGG + Chr8:76970848-76970867 MsG0880046700.01.T01:intron 25.0%
! TAAGTTCCTTAATCCAATTA+GGG - Chr8:76970034-76970053 None:intergenic 25.0%
! TACAGGGTAATTACTATAAT+TGG + Chr8:76970777-76970796 MsG0880046700.01.T01:intron 25.0%
! TATCTGCATATGTTAACAAA+AGG - Chr8:76970843-76970862 None:intergenic 25.0%
! TCAAAAGTTATATCATCTTC+AGG + Chr8:76970460-76970479 MsG0880046700.01.T01:intron 25.0%
! TTAAGTTCCTTAATCCAATT+AGG - Chr8:76970035-76970054 None:intergenic 25.0%
! TTAATTGTCAATATCTCCAA+GGG + Chr8:76971563-76971582 MsG0880046700.01.T01:CDS 25.0%
! TTACAATTTCTTGGAAGTAA+GGG + Chr8:76972058-76972077 MsG0880046700.01.T01:CDS 25.0%
! TTGAAGAGTAGGAAAAATAT+AGG - Chr8:76970636-76970655 None:intergenic 25.0%
! TTGCTAAAACTTCAAAATCA+TGG - Chr8:76971033-76971052 None:intergenic 25.0%
! TTGGATTAAGGAACTTAAAT+TGG + Chr8:76970037-76970056 MsG0880046700.01.T01:intron 25.0%
! TTTACAATTTCTTGGAAGTA+AGG + Chr8:76972057-76972076 MsG0880046700.01.T01:CDS 25.0%
!! AGGTTATTGATTATATCACA+AGG - Chr8:76970823-76970842 None:intergenic 25.0%
!! TTCAACCTTAATGTTTTCAT+TGG - Chr8:76971459-76971478 None:intergenic 25.0%
!!! TAGATTAACTTGTGATCAAA+GGG + Chr8:76971239-76971258 MsG0880046700.01.T01:intron 25.0%
!!! TTACTCATTTTTTACCCTAA+TGG + Chr8:76971716-76971735 MsG0880046700.01.T01:intron 25.0%
!!! TTAGATTAACTTGTGATCAA+AGG + Chr8:76971238-76971257 MsG0880046700.01.T01:intron 25.0%
AACAAAAATTAAACACCGAG+TGG - Chr8:76970293-76970312 None:intergenic 30.0%
AACATTGATGAATTTCCAAC+AGG + Chr8:76970724-76970743 MsG0880046700.01.T01:CDS 30.0%
AAGTAAACTTACTCAAAGTC+AGG - Chr8:76971698-76971717 None:intergenic 30.0%
ACTCATTATAGTTGAAGAGT+AGG - Chr8:76970647-76970666 None:intergenic 30.0%
AGAAAGCTTAATTAGTTGTC+AGG - Chr8:76970947-76970966 None:intergenic 30.0%
ATAAGCAGTGTTGTCAATTA+TGG - Chr8:76971946-76971965 None:intergenic 30.0%
ATAATAATGCTTGAACGTTC+CGG + Chr8:76971201-76971220 MsG0880046700.01.T01:intron 30.0%
ATGATTATAAGCAAGCCATT+AGG - Chr8:76971734-76971753 None:intergenic 30.0%
CTTAATTGTCAATATCTCCA+AGG + Chr8:76971562-76971581 MsG0880046700.01.T01:CDS 30.0%
CTTGGAGATATTGACAATTA+AGG - Chr8:76971564-76971583 None:intergenic 30.0%
GGAATTAGCAATTAGGATTA+AGG + Chr8:76969977-76969996 MsG0880046700.01.T01:intron 30.0%
GGATAGTCTTTACAATTTCT+TGG + Chr8:76972049-76972068 MsG0880046700.01.T01:CDS 30.0%
TACAAAATGTTGTCAAACAG+AGG + Chr8:76971848-76971867 MsG0880046700.01.T01:intron 30.0%
TACAATTTCTTGGAAGTAAG+GGG + Chr8:76972059-76972078 MsG0880046700.01.T01:CDS 30.0%
TGATTATAAGCAAGCCATTA+GGG - Chr8:76971733-76971752 None:intergenic 30.0%
TGTAAGGAATCAACATTAAG+AGG - Chr8:76972007-76972026 None:intergenic 30.0%
TTATGTTGTATGAGATGCAA+GGG - Chr8:76970613-76970632 None:intergenic 30.0%
TTGATTGAAAATCCAAGTCT+TGG + Chr8:76971101-76971120 MsG0880046700.01.T01:intron 30.0%
TTGCCATGACACTTTATTAT+GGG + Chr8:76971004-76971023 MsG0880046700.01.T01:intron 30.0%
! GATTTTCCCTAATTGGATTA+AGG + Chr8:76970025-76970044 MsG0880046700.01.T01:intron 30.0%
! TAGCAATTTGAAACCCTAAT+TGG + Chr8:76970084-76970103 MsG0880046700.01.T01:intron 30.0%
! TTTTGTAATACAACGCATTG+CGG - Chr8:76971835-76971854 None:intergenic 30.0%
!! AGATGACTTGTTTAGAATCA+TGG - Chr8:76970880-76970899 None:intergenic 30.0%
!! CTTAATGTTGATTCCTTACA+GGG + Chr8:76972007-76972026 MsG0880046700.01.T01:intron 30.0%
!! TCTTAATGTTGATTCCTTAC+AGG + Chr8:76972006-76972025 MsG0880046700.01.T01:intron 30.0%
!!! AGCTTTTTTCAGTTGGATTT+TGG + Chr8:76971306-76971325 MsG0880046700.01.T01:intron 30.0%
!!! ATTTTGATTCTTAAGCCACT+CGG + Chr8:76970275-76970294 MsG0880046700.01.T01:intron 30.0%
!!! CAGTTTTGATTTTCCCTAAT+TGG + Chr8:76970018-76970037 MsG0880046700.01.T01:intron 30.0%
AAAAGGGGGAAAATCCAATT+AGG - Chr8:76970101-76970120 None:intergenic 35.0%
AAAGGGGGAAAATCCAATTA+GGG - Chr8:76970100-76970119 None:intergenic 35.0%
AATACCCATAAACCCATGTA+AGG - Chr8:76971158-76971177 None:intergenic 35.0%
AATTACACGTTGTTCTGACA+AGG + Chr8:76970145-76970164 MsG0880046700.01.T01:intron 35.0%
ACACAAATGAAACAAGACCT+AGG - Chr8:76970249-76970268 None:intergenic 35.0%
ACCTAGGCGAAATTAAACAA+GGG - Chr8:76970233-76970252 None:intergenic 35.0%
ATTATGTCCTAGATCGATAC+AGG + Chr8:76970518-76970537 MsG0880046700.01.T01:intron 35.0%
CATATGCAGATATGATATGG+AGG + Chr8:76970851-76970870 MsG0880046700.01.T01:intron 35.0%
CCAATTCAAAATCCAAGACT+TGG - Chr8:76971116-76971135 None:intergenic 35.0%
GTTATGTTGTATGAGATGCA+AGG - Chr8:76970614-76970633 None:intergenic 35.0%
GTTGCCATGACACTTTATTA+TGG + Chr8:76971003-76971022 MsG0880046700.01.T01:intron 35.0%
GTTTCATGGACAACTATATC+AGG + Chr8:76970914-76970933 MsG0880046700.01.T01:intron 35.0%
TAATTAGCGTGAATGTCACT+TGG + Chr8:76970335-76970354 MsG0880046700.01.T01:intron 35.0%
TATGGATCGCAGAAAATAGT+GGG - Chr8:76971928-76971947 None:intergenic 35.0%
TCTAAACCAGCAATTTACTC+CGG - Chr8:76971223-76971242 None:intergenic 35.0%
TTATGGATCGCAGAAAATAG+TGG - Chr8:76971929-76971948 None:intergenic 35.0%
! ACTATAGCTCTTTTCCGATT+TGG - Chr8:76970568-76970587 None:intergenic 35.0%
! CATCCCATAATAAAGTGTCA+TGG - Chr8:76971010-76971029 None:intergenic 35.0%
! CCAAGTCTTGGATTTTGAAT+TGG + Chr8:76971113-76971132 MsG0880046700.01.T01:intron 35.0%
! GCTTTCTTGATTTGAATGCA+TGG + Chr8:76970960-76970979 MsG0880046700.01.T01:intron 35.0%
!! CTGTCATATTTTTGTTTGCG+CGG - Chr8:76971658-76971677 None:intergenic 35.0%
!! TTGCAGTTCTGGAATATACA+GGG + Chr8:76970761-76970780 MsG0880046700.01.T01:CDS 35.0%
!!! GTTCTCTAGCTTTTTTCAGT+TGG + Chr8:76971299-76971318 MsG0880046700.01.T01:intron 35.0%
AACAAGTCATCTGTAGAACG+TGG + Chr8:76970888-76970907 MsG0880046700.01.T01:intron 40.0%
ACGATACTGTTTACCCGAAT+TGG + Chr8:76971786-76971805 MsG0880046700.01.T01:intron 40.0%
AGGAACAACTCCATCAAACA+TGG - Chr8:76971486-76971505 None:intergenic 40.0%
AGTGCCTTACATGGGTTTAT+GGG + Chr8:76971151-76971170 MsG0880046700.01.T01:intron 40.0%
AGTTCAGTAGTGCCTTACAT+GGG + Chr8:76971143-76971162 MsG0880046700.01.T01:intron 40.0%
ATATGCACTTGTGCAACGAT+GGG - Chr8:76970695-76970714 None:intergenic 40.0%
GACCTAGGCGAAATTAAACA+AGG - Chr8:76970234-76970253 None:intergenic 40.0%
GGGAACTGGAATTAGCAATT+AGG + Chr8:76969970-76969989 MsG0880046700.01.T01:intron 40.0%
GTAGAACGTGGAATGTTTCA+TGG + Chr8:76970900-76970919 MsG0880046700.01.T01:intron 40.0%
GTTGAAGTCACCATGTTTGA+TGG + Chr8:76971473-76971492 MsG0880046700.01.T01:CDS 40.0%
TAGTGCCTTACATGGGTTTA+TGG + Chr8:76971150-76971169 MsG0880046700.01.T01:intron 40.0%
TATATGCACTTGTGCAACGA+TGG - Chr8:76970696-76970715 None:intergenic 40.0%
TCATCATCCAATTCCCTGTA+AGG - Chr8:76972023-76972042 None:intergenic 40.0%
! CAGTCTGGGATGTTACAAAT+GGG + Chr8:76969950-76969969 MsG0880046700.01.T01:intron 40.0%
! GTTGATTCCTTACAGGGAAT+TGG + Chr8:76972013-76972032 MsG0880046700.01.T01:intron 40.0%
! TACCAAACCTGTATCGATCT+AGG - Chr8:76970528-76970547 None:intergenic 40.0%
! TCCCTTGTTTAATTTCGCCT+AGG + Chr8:76970229-76970248 MsG0880046700.01.T01:intron 40.0%
! TGACCAGTTCGGTTCATTTT+TGG + Chr8:76971385-76971404 MsG0880046700.01.T01:CDS 40.0%
! TGGATCTTTGTTGTCAACAG+CGG + Chr8:76970355-76970374 MsG0880046700.01.T01:intron 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG + Chr8:76969905-76969924 MsG0880046700.01.T01:CDS 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG + Chr8:76969906-76969925 MsG0880046700.01.T01:CDS 40.0%
!! GTTGCAGTTCTGGAATATAC+AGG + Chr8:76970760-76970779 MsG0880046700.01.T01:CDS 40.0%
!! TAACATCCCAGACTGCTTTT+AGG - Chr8:76969945-76969964 None:intergenic 40.0%
!!! TTCGGTTCATTTTTGGTGGA+TGG + Chr8:76971392-76971411 MsG0880046700.01.T01:CDS 40.0%
AAACGCTATCGTTGCAGTTC+TGG + Chr8:76970750-76970769 MsG0880046700.01.T01:CDS 45.0%
AACGTTCCGGAGTAAATTGC+TGG + Chr8:76971214-76971233 MsG0880046700.01.T01:intron 45.0%
AATGAACCGAACTGGTCAGT+AGG - Chr8:76971383-76971402 None:intergenic 45.0%
AATGTAATCCATCGCTCACC+AGG - Chr8:76971422-76971441 None:intergenic 45.0%
CCACCAAAAATGAACCGAAC+TGG - Chr8:76971391-76971410 None:intergenic 45.0%
GAGTTCAGTAGTGCCTTACA+TGG + Chr8:76971142-76971161 MsG0880046700.01.T01:intron 45.0%
GGAATTGGATGATGAGTTGC+AGG + Chr8:76972028-76972047 MsG0880046700.01.T01:CDS 45.0%
GGCAATCCTAAAAGCAGTCT+GGG + Chr8:76969936-76969955 MsG0880046700.01.T01:intron 45.0%
GGGATGTTACAAATGGGAAC+TGG + Chr8:76969956-76969975 MsG0880046700.01.T01:intron 45.0%
GTCAATATCTCCAAGGGAGA+TGG + Chr8:76971569-76971588 MsG0880046700.01.T01:CDS 45.0%
GTCCTAGATCGATACAGGTT+TGG + Chr8:76970523-76970542 MsG0880046700.01.T01:intron 45.0%
GTTCCTGCTCCGAAAAAAAG+CGG + Chr8:76971500-76971519 MsG0880046700.01.T01:CDS 45.0%
TCAAAGTCAGGACCAGCATA+GGG - Chr8:76971686-76971705 None:intergenic 45.0%
TGGAAATCATGTGCTCTGCT+TGG + Chr8:76971600-76971619 MsG0880046700.01.T01:CDS 45.0%
! GCAGTCTGGGATGTTACAAA+TGG + Chr8:76969949-76969968 MsG0880046700.01.T01:intron 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG + Chr8:76969907-76969926 MsG0880046700.01.T01:CDS 45.0%
!! CCAGTTCGGTTCATTTTTGG+TGG + Chr8:76971388-76971407 MsG0880046700.01.T01:CDS 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG + Chr8:76969915-76969934 MsG0880046700.01.T01:intron 45.0%
ACGATAGCGTTTGTGCCTGT+TGG - Chr8:76970742-76970761 None:intergenic 50.0%
CACGCTGAAAAGACTCGTGT+TGG + Chr8:76969898-76969917 MsG0880046700.01.T01:CDS 50.0%
CGGCAATCCTAAAAGCAGTC+TGG + Chr8:76969935-76969954 MsG0880046700.01.T01:intron 50.0%
CTCAAAGTCAGGACCAGCAT+AGG - Chr8:76971687-76971706 None:intergenic 50.0%
GTTGTCAACAGCGGTCACTA+CGG + Chr8:76970364-76970383 MsG0880046700.01.T01:intron 50.0%
GTTGTTCTGACAAGGCCATG+AGG + Chr8:76970153-76970172 MsG0880046700.01.T01:intron 50.0%
TAATCCATCGCTCACCAGGT+CGG - Chr8:76971418-76971437 None:intergenic 50.0%
TCCGAAAAAAAGCGGTGGTG+TGG + Chr8:76971508-76971527 MsG0880046700.01.T01:CDS 50.0%
TGACCTAGCGGGAAGTTTCT+CGG + Chr8:76969852-76969871 MsG0880046700.01.T01:CDS 50.0%
TTGCAGCCTACTGACCAGTT+CGG + Chr8:76971374-76971393 MsG0880046700.01.T01:CDS 50.0%
TTGTCAACAGCGGTCACTAC+GGG + Chr8:76970365-76970384 MsG0880046700.01.T01:intron 50.0%
TTTCCGAGAAACTTCCCGCT+AGG - Chr8:76969858-76969877 None:intergenic 50.0%
! GCAACGCGGTAGTGTGTTTT+TGG - Chr8:76970412-76970431 None:intergenic 50.0%
!!! GCCACACCACCGCTTTTTTT+CGG - Chr8:76971512-76971531 None:intergenic 50.0%
AATCAGCCGCGATAGCAACG+CGG - Chr8:76970426-76970445 None:intergenic 55.0%
ACACTACCGCGTTGCTATCG+CGG + Chr8:76970417-76970436 MsG0880046700.01.T01:intron 55.0%
ATGACAGCTGAGCCCTATGC+TGG + Chr8:76971671-76971690 MsG0880046700.01.T01:CDS 55.0%
CAGCACATCACCATCTCCCT+TGG - Chr8:76971582-76971601 None:intergenic 55.0%
CCTGCTCCGAAAAAAAGCGG+TGG + Chr8:76971503-76971522 MsG0880046700.01.T01:CDS 55.0%
! CAAGGGAGATGGTGATGTGC+TGG + Chr8:76971580-76971599 MsG0880046700.01.T01:CDS 55.0%
!! TTTTTGGTGGATGGCCGACC+TGG + Chr8:76971401-76971420 MsG0880046700.01.T01:CDS 55.0%
!!! CCACCGCTTTTTTTCGGAGC+AGG - Chr8:76971506-76971525 None:intergenic 55.0%
! GGTCACTACGGGTGCTATCG+CGG + Chr8:76970376-76970395 MsG0880046700.01.T01:intron 60.0%
! TCTCGGAAAGCGTGCGAGTG+AGG + Chr8:76969869-76969888 MsG0880046700.01.T01:CDS 60.0%
ATGGCCGACCTGGTGAGCGA+TGG + Chr8:76971411-76971430 MsG0880046700.01.T01:CDS 65.0%
! CTACGGGTGCTATCGCGGCG+CGG + Chr8:76970381-76970400 MsG0880046700.01.T01:intron 70.0%
! GGTGCTATCGCGGCGCGGAG+CGG + Chr8:76970386-76970405 MsG0880046700.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 76969847 76972106 76969847 ID=MsG0880046700.01;Name=MsG0880046700.01
Chr8 mRNA 76969847 76972106 76969847 ID=MsG0880046700.01.T01;Parent=MsG0880046700.01;Name=MsG0880046700.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.4|0.75|0.6|5|0|215
Chr8 exon 76969847 76969928 76969847 ID=MsG0880046700.01.T01:exon:32607;Parent=MsG0880046700.01.T01
Chr8 exon 76970689 76970782 76970689 ID=MsG0880046700.01.T01:exon:32608;Parent=MsG0880046700.01.T01
Chr8 exon 76970860 76970906 76970860 ID=MsG0880046700.01.T01:exon:32609;Parent=MsG0880046700.01.T01
Chr8 exon 76971360 76971705 76971360 ID=MsG0880046700.01.T01:exon:32610;Parent=MsG0880046700.01.T01
Chr8 exon 76972028 76972106 76972028 ID=MsG0880046700.01.T01:exon:32611;Parent=MsG0880046700.01.T01
Chr8 CDS 76969847 76969928 76969847 ID=MsG0880046700.01.T01:cds;Parent=MsG0880046700.01.T01
Chr8 CDS 76970689 76970782 76970689 ID=MsG0880046700.01.T01:cds;Parent=MsG0880046700.01.T01
Chr8 CDS 76970860 76970906 76970860 ID=MsG0880046700.01.T01:cds;Parent=MsG0880046700.01.T01
Chr8 CDS 76971360 76971705 76971360 ID=MsG0880046700.01.T01:cds;Parent=MsG0880046700.01.T01
Chr8 CDS 76972028 76972106 76972028 ID=MsG0880046700.01.T01:cds;Parent=MsG0880046700.01.T01
Gene Sequence

>MsG0880046700.01.T01

ATGGGTGACCTAGCGGGAAGTTTCTCGGAAAGCGTGCGAGTGAGGACAAAGCACGCTGAAAAGACTCGTGTTGGTTTGTGGGACTCCCATCGTTGCACAAGTGCATATACTGAATACAACATTGATGAATTTCCAACAGGCACAAACGCTATCGTTGCAGTTCTGGAATATACAGGATATGATATGGAGGCTGCCATGATTCTAAACAAGTCATCTGTAGAACGGTCTGTTCTTATTTTGCAGCCTACTGACCAGTTCGGTTCATTTTTGGTGGATGGCCGACCTGGTGAGCGATGGATTACATTGAAAAGACAATTTGCCAATGAAAACATTAAGGTTGAAGTCACCATGTTTGATGGAGTTGTTCCTGCTCCGAAAAAAAGCGGTGGTGTGGCTAATGCAGATGAAGTGCAGCTACACATTACCTTAATTGTCAATATCTCCAAGGGAGATGGTGATGTGCTGGAAATCATGTGCTCTGCTTGGCCAGACAATATAGTTATAAAAAGGCTGCTCGTCCGCGCAAACAAAAATATGACAGCTGAGCCCTATGCTGGTCCTGACTTTGAGGAATTGGATGATGAGTTGCAGGATAGTCTTTACAATTTCTTGGAAGTAAGGGGTATAAATGATGAACTTGCCAAATAG
Protein sequence

>MsG0880046700.01.T01

MGDLAGSFSESVRVRTKHAEKTRVGLWDSHRCTSAYTEYNIDEFPTGTNAIVAVLEYTGYDMEAAMILNKSSVERSVLILQPTDQFGSFLVDGRPGERWITLKRQFANENIKVEVTMFDGVVPAPKKSGGVANADEVQLHITLIVNISKGDGDVLEIMCSAWPDNIVIKRLLVRANKNMTAEPYAGPDFEELDDELQDSLYNFLEVRGINDELAK*