AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018289.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018289.01.T01 MTR_4g009100 78.924 446 35 7 1 419 1 414 0.0 613
MsG0480018289.01.T01 MTR_4g009100 85.559 367 23 6 1 340 1 364 0.0 550
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018289.01.T01 AT1G15810 41.772 237 78 6 200 414 219 417 9.02e-42 153
MsG0480018289.01.T01 AT1G80620 31.237 477 202 17 3 416 1 414 4.42e-41 151

Find 120 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGCCAATCTCGTTTC+AGG 0.197152 4:-2838533 MsG0480018289.01.T01:CDS
TCAGCAGAGGACATGTTATC+TGG 0.221149 4:+2836594 None:intergenic
TTTGCTCAAGATATCATCTT+TGG 0.250670 4:+2838612 None:intergenic
CGTATCCGAAGCGGAATCTT+TGG 0.258321 4:+2838483 None:intergenic
GGAAACCGGCGCAGTGGTTT+TGG 0.262134 4:+2838573 None:intergenic
AGTGGTGGAGAGTAGGATTT+GGG 0.287785 4:+2838793 None:intergenic
CGGGCTTTATAAGTATATTC+TGG 0.291890 4:+2834260 None:intergenic
TTAGCCAAGGTGAATGATTC+AGG 0.297727 4:-2838271 MsG0480018289.01.T01:CDS
GTGAATGATTCAGGGAGTTT+TGG 0.301942 4:-2838262 MsG0480018289.01.T01:CDS
TTATATATGCATGGTGAATT+AGG 0.318193 4:-2838229 MsG0480018289.01.T01:CDS
TACTAACATGAAGCTTTATT+AGG 0.327657 4:+2838007 None:intergenic
TTGTTACCGGATTCGATGTT+TGG 0.341309 4:-2838313 MsG0480018289.01.T01:CDS
CGATGTTTGGGAAGGAGATA+AGG 0.345042 4:-2838300 MsG0480018289.01.T01:CDS
GTTCAGCCATGTCTCAGTTC+TGG 0.366750 4:-2833061 MsG0480018289.01.T01:intron
CAGACAATTAAGATGGGTAT+TGG 0.374450 4:-2835329 MsG0480018289.01.T01:CDS
AGCTTGGAGTTCCACCAATC+AGG 0.379248 4:+2837158 None:intergenic
CTCGTAAGTCATAACGTTAT+CGG 0.382749 4:+2833003 None:intergenic
ACTACCATCGGTGGTGGTGG+TGG 0.382874 4:-2838454 MsG0480018289.01.T01:CDS
GAGTGGTGGAGAGTAGGATT+TGG 0.385931 4:+2838792 None:intergenic
AGGAGAAGGTGTTGTGTTTG+AGG 0.387280 4:+2838660 None:intergenic
TCTGACTTGTTGTAAGGATT+CGG 0.391613 4:+2838705 None:intergenic
AATATGTCACCGGGGAATAG+TGG 0.391851 4:-2838343 MsG0480018289.01.T01:CDS
CTATTCCCCGGTGACATATT+CGG 0.404896 4:+2838346 None:intergenic
TAGTGGGACGAGTTTGTTAC+CGG 0.405301 4:-2838326 MsG0480018289.01.T01:CDS
ATTGGGTATTATTATGAAGA+TGG 0.415344 4:-2835311 MsG0480018289.01.T01:CDS
ACCGTCATTGTCGCCGGAGT+TGG 0.415546 4:+2838750 None:intergenic
CTTAGAGAGAACAAAACAAT+AGG 0.423531 4:+2834301 None:intergenic
TGGAGGTGGAGAAGAGGTGG+TGG 0.432543 4:+2838770 None:intergenic
GGAGAAGAAGCGCCATTGTT+GGG 0.434091 4:+2838833 None:intergenic
CTCAAGTGAAAGGAAAAGAT+TGG 0.434328 4:-2838183 MsG0480018289.01.T01:CDS
GTTGAAGAAAGTGAGGGAAA+TGG 0.440483 4:-2838134 MsG0480018289.01.T01:CDS
TGTTACCGGATTCGATGTTT+GGG 0.445980 4:-2838312 MsG0480018289.01.T01:CDS
AGACAATTAAGATGGGTATT+GGG 0.447148 4:-2835328 MsG0480018289.01.T01:CDS
GTCGCCACCGTCATTGTCGC+CGG 0.453463 4:+2838744 None:intergenic
GAGAAGAGGTGGTGGAGTGG+TGG 0.454105 4:+2838778 None:intergenic
TGATGATAGATGCTTAATCT+TGG 0.455799 4:+2836293 None:intergenic
GATGTTTGGGAAGGAGATAA+GGG 0.455958 4:-2838299 MsG0480018289.01.T01:CDS
GGTCTCCACCTCGGCGTCAC+CGG 0.457444 4:+2838367 None:intergenic
GTTGAACACTTTATTTGTAT+CGG 0.460097 4:+2838078 None:intergenic
GGAGGCTTTGACAAGTAGCT+TGG 0.462551 4:+2837142 None:intergenic
TACCATCGGTGGTGGTGGTG+GGG 0.463474 4:-2838452 MsG0480018289.01.T01:CDS
GTGGTGGAGTGGTGGAGAGT+AGG 0.463911 4:+2838786 None:intergenic
GAAGGTGTTGTGTTTGAGGT+TGG 0.464761 4:+2838664 None:intergenic
GTCATTGTCGCCGGAGTTGG+AGG 0.467155 4:+2838753 None:intergenic
ATTGATATGTTGTCCCTGAT+TGG 0.468754 4:-2837172 MsG0480018289.01.T01:CDS
TACATATCCTGAAACGAGAT+TGG 0.469151 4:+2838526 None:intergenic
TGTATCTCAGACAATTAAGA+TGG 0.472208 4:-2835336 MsG0480018289.01.T01:intron
CTACCATCGGTGGTGGTGGT+GGG 0.475645 4:-2838453 MsG0480018289.01.T01:CDS
TTGGGTATTATTATGAAGAT+GGG 0.475765 4:-2835310 MsG0480018289.01.T01:CDS
TGAGCTTCTGACTTGTTGTA+AGG 0.477275 4:+2838699 None:intergenic
ACCATCGGTGGTGGTGGTGG+GGG 0.490919 4:-2838451 MsG0480018289.01.T01:CDS
CTCTTCTCCACCTCCAACTC+CGG 0.494135 4:-2838763 MsG0480018289.01.T01:CDS
TGCGAGGGAGAGAGAGGAGA+AGG 0.494280 4:+2838646 None:intergenic
TCCTTCCCAAACATCGAATC+CGG 0.494755 4:+2838307 None:intergenic
CTTTGTTGCGAGGGAGAGAG+AGG 0.501599 4:+2838640 None:intergenic
GTGGAGAAGAGGTGGTGGAG+TGG 0.503295 4:+2838775 None:intergenic
CGGAGAAGAAGCGCCATTGT+TGG 0.507100 4:+2838832 None:intergenic
GTGAGAGGTTGAAGAAAGTG+AGG 0.507809 4:-2838141 MsG0480018289.01.T01:CDS
TGATAGCAATGGTTCAAAAG+AGG 0.510152 4:-2834363 MsG0480018289.01.T01:CDS
AACTCATAACATTATCAATA+CGG 0.513048 4:+2833035 None:intergenic
GTTAACAGATCATCGGAAAC+CGG 0.513781 4:+2838559 None:intergenic
CAGCAGAGGACATGTTATCT+GGG 0.517850 4:+2836595 None:intergenic
GGGGTGGAGCAAGAGAAAGA+GGG 0.526150 4:+2838854 None:intergenic
TTGGATTCGCTTTGTTGCGA+GGG 0.532224 4:+2838631 None:intergenic
TCAACAAGATGCTCTTTAGG+AGG 0.535728 4:+2837124 None:intergenic
ATTGTCGCCGGAGTTGGAGG+TGG 0.536948 4:+2838756 None:intergenic
CCGTTCCAAAACCACTGCGC+CGG 0.539926 4:-2838578 MsG0480018289.01.T01:CDS
TTTGGATTCGCTTTGTTGCG+AGG 0.540428 4:+2838630 None:intergenic
ATATGTCACCGGGGAATAGT+GGG 0.541474 4:-2838342 MsG0480018289.01.T01:CDS
TCGGAAAGGTTTGATAGCAA+TGG 0.546402 4:-2834374 MsG0480018289.01.T01:CDS
GCTTGGAGTTCCACCAATCA+GGG 0.546915 4:+2837159 None:intergenic
TGTAAGGATTCGGAGAAGGA+GGG 0.550289 4:+2838715 None:intergenic
GTATTGATAATGTTATGAGT+TGG 0.552565 4:-2833033 MsG0480018289.01.T01:CDS
GAGAAGAAGCGCCATTGTTG+GGG 0.553266 4:+2838834 None:intergenic
CTTCAACCTCTCACTCAACT+CGG 0.554778 4:+2838150 None:intergenic
TAACGTTATGACTTACGAGT+TGG 0.555010 4:-2832999 MsG0480018289.01.T01:CDS
CGATTGCCGAGTTGAGTGAG+AGG 0.557053 4:-2838156 MsG0480018289.01.T01:CDS
TTGTAAGGATTCGGAGAAGG+AGG 0.557469 4:+2838714 None:intergenic
CTTCTGAGTTAACAGATCAT+CGG 0.558389 4:+2838552 None:intergenic
AAAACTACCATCGGTGGTGG+TGG 0.558613 4:-2838457 MsG0480018289.01.T01:CDS
GCTTTAGGATGTGCATTCCT+CGG 0.559876 4:-2834393 MsG0480018289.01.T01:intron
ACCGGATTCGATGTTTGGGA+AGG 0.563280 4:-2838308 MsG0480018289.01.T01:CDS
GACATATTCGGTCTCCACCT+CGG 0.565356 4:+2838358 None:intergenic
TTGTTGTAAGGATTCGGAGA+AGG 0.565751 4:+2838711 None:intergenic
TAGCCAAGGTGAATGATTCA+GGG 0.570378 4:-2838270 MsG0480018289.01.T01:CDS
TCGATCCAAAGATTCCGCTT+CGG 0.574006 4:-2838488 MsG0480018289.01.T01:CDS
ATTGGACTTGATGTGATTCG+TGG 0.579464 4:-2838427 MsG0480018289.01.T01:CDS
TATCATCAGTTCTACACAAG+AGG 0.580076 4:-2836278 MsG0480018289.01.T01:intron
GGGTGGAGCAAGAGAAAGAG+GGG 0.581985 4:+2838855 None:intergenic
TGAGAGGTTGAAGAAAGTGA+GGG 0.583053 4:-2838140 MsG0480018289.01.T01:CDS
CGGAGTTGGAGGTGGAGAAG+AGG 0.588809 4:+2838764 None:intergenic
AGGATGTGCATTCCTCGGAA+AGG 0.590721 4:-2834388 MsG0480018289.01.T01:CDS
TTGGGAAGGAGATAAGGGAT+AGG 0.591410 4:-2838294 MsG0480018289.01.T01:CDS
TCCAACTCCGGCGACAATGA+CGG 0.592754 4:-2838751 MsG0480018289.01.T01:CDS
AAATTGAGACCTCAAGTGAA+AGG 0.593143 4:-2838193 MsG0480018289.01.T01:CDS
ATTGAAAATTGAGCTGACAA+AGG 0.594958 4:-2836568 MsG0480018289.01.T01:intron
AATCCCAGTCGGTTCTTCTG+AGG 0.595536 4:+2834324 None:intergenic
GTGGAGACCGAATATGTCAC+CGG 0.596971 4:-2838353 MsG0480018289.01.T01:CDS
GATAAGGGATAGGTTAGCCA+AGG 0.602083 4:-2838284 MsG0480018289.01.T01:CDS
GATATGTTGTCCCTGATTGG+TGG 0.604709 4:-2837169 MsG0480018289.01.T01:CDS
TGGAGACCGAATATGTCACC+GGG 0.607951 4:-2838352 MsG0480018289.01.T01:CDS
AGTTGGAGGTGGAGAAGAGG+TGG 0.608640 4:+2838767 None:intergenic
ATATACTTATAAAGCCCGAC+TGG 0.610202 4:-2834255 MsG0480018289.01.T01:intron
AATACCTCAGAAGAACCGAC+TGG 0.610301 4:-2834328 MsG0480018289.01.T01:CDS
CGTCACCCGATTTACCAGTC+GGG 0.610731 4:+2834241 None:intergenic
AAACTCGTCCCACTATTCCC+CGG 0.610791 4:+2838334 None:intergenic
AGACGCCGGTGACGCCGAGG+TGG 0.621545 4:-2838372 MsG0480018289.01.T01:CDS
ATCATCGGAAACCGGCGCAG+TGG 0.628279 4:+2838567 None:intergenic
GTATCTCAGACAATTAAGAT+GGG 0.635224 4:-2835335 MsG0480018289.01.T01:intron
ACTCCCTGAATCATTCACCT+TGG 0.637166 4:+2838267 None:intergenic
AGAAGAAGCGCCATTGTTGG+GGG 0.640330 4:+2838835 None:intergenic
ACTGTTAGGTTATATATGCA+TGG 0.640796 4:-2838238 MsG0480018289.01.T01:CDS
ATCAGACGCCGGTGACGCCG+AGG 0.642782 4:-2838375 MsG0480018289.01.T01:CDS
CGGTAGCCAGAACTGAGACA+TGG 0.649250 4:+2833055 None:intergenic
ATTGCTATCAAACCTTTCCG+AGG 0.666580 4:+2834376 None:intergenic
ATACCTCAGAAGAACCGACT+GGG 0.671133 4:-2834327 MsG0480018289.01.T01:CDS
AACTCCGGCGACAATGACGG+TGG 0.692733 4:-2838748 MsG0480018289.01.T01:CDS
AAATTCGACGAATCAGACGC+CGG 0.695623 4:-2838386 MsG0480018289.01.T01:CDS
AAAACAATAGGAATCCCAGT+CGG 0.725069 4:+2834313 None:intergenic
GGAGACCGAATATGTCACCG+GGG 0.804982 4:-2838351 MsG0480018289.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAAATCTAGTATAA+CGG - Chr4:2835799-2835818 MsG0480018289.01.T01:intron 10.0%
!! AATATATTAATGTTTGACTA+TGG + Chr4:2835002-2835021 None:intergenic 15.0%
!! ATACATAATATAACATTCTA+AGG + Chr4:2838270-2838289 None:intergenic 15.0%
!! TAAAATAAATCTATAGTAGA+TGG - Chr4:2834574-2834593 MsG0480018289.01.T01:intron 15.0%
!! TAATATTTCTTGTATCATAT+TGG - Chr4:2837975-2837994 MsG0480018289.01.T01:intron 15.0%
!! TATAGATAAATGAATGTAAT+AGG - Chr4:2838333-2838352 MsG0480018289.01.T01:CDS 15.0%
!! TATATGAAAAATATAAGTGA+TGG - Chr4:2834669-2834688 MsG0480018289.01.T01:intron 15.0%
!!! ATGTTAACTAAACAAATTTT+AGG - Chr4:2836520-2836539 MsG0480018289.01.T01:intron 15.0%
!!! TAAAATTTGTTTAGTTAACA+TGG + Chr4:2836521-2836540 None:intergenic 15.0%
!!! TTTTTCAATTAGTTTATGTT+GGG + Chr4:2837687-2837706 None:intergenic 15.0%
!!! TTTTTGAATTTTTAGTTTGT+TGG + Chr4:2836744-2836763 None:intergenic 15.0%
!!! TTTTTTCAATTAGTTTATGT+TGG + Chr4:2837688-2837707 None:intergenic 15.0%
!! AAAAAAATTAGTACTAGAGT+TGG + Chr4:2835928-2835947 None:intergenic 20.0%
!! AAACTATAATATGTTGTATC+TGG + Chr4:2838061-2838080 None:intergenic 20.0%
!! AACTCATAACATTATCAATA+CGG + Chr4:2838853-2838872 None:intergenic 20.0%
!! AATCAGGCAAAAATAATATA+TGG + Chr4:2837884-2837903 None:intergenic 20.0%
!! ACTGGTAAAGATTAAAAATA+AGG + Chr4:2836311-2836330 None:intergenic 20.0%
!! ACTTTATAAATATTCTGCAA+AGG - Chr4:2836116-2836135 MsG0480018289.01.T01:intron 20.0%
!! ATCAGGCAAAAATAATATAT+GGG + Chr4:2837883-2837902 None:intergenic 20.0%
!! ATGAACATAAGAATTTAATC+AGG + Chr4:2837184-2837203 None:intergenic 20.0%
!! ATGACCAAAATATATTTGTT+TGG + Chr4:2834355-2834374 None:intergenic 20.0%
!! CTGGTAAAGATTAAAAATAA+GGG + Chr4:2836310-2836329 None:intergenic 20.0%
!! GAATATTTATAAAGTTGTAC+AGG + Chr4:2836111-2836130 None:intergenic 20.0%
!! GAATTTACTTGAAAAACTAT+TGG + Chr4:2838090-2838109 None:intergenic 20.0%
!! GTAATAGCTTAAAAAAAAGT+GGG + Chr4:2835039-2835058 None:intergenic 20.0%
!! TAAAGTATAGCAAACATATT+TGG + Chr4:2835458-2835477 None:intergenic 20.0%
!! TAATAGCTTAAAAAAAAGTG+GGG + Chr4:2835038-2835057 None:intergenic 20.0%
!! TACCATAATTAAACTAAATC+AGG + Chr4:2837900-2837919 None:intergenic 20.0%
!! TCATAAAAATCATAGCTTAA+AGG - Chr4:2836625-2836644 MsG0480018289.01.T01:intron 20.0%
!! TCTTAGTAAAAGAATATTGT+TGG - Chr4:2836796-2836815 MsG0480018289.01.T01:intron 20.0%
!! TGTAATAGCTTAAAAAAAAG+TGG + Chr4:2835040-2835059 None:intergenic 20.0%
!! TGTTCGATATTAAATTTAGA+CGG - Chr4:2835430-2835449 MsG0480018289.01.T01:intron 20.0%
!! TTATGAGAAATGAAATACTA+GGG + Chr4:2837050-2837069 None:intergenic 20.0%
!!! AACAAATATATTTTGGTCAT+AGG - Chr4:2834355-2834374 MsG0480018289.01.T01:CDS 20.0%
!!! ACAAATATATTTTGGTCATA+GGG - Chr4:2834356-2834375 MsG0480018289.01.T01:CDS 20.0%
!!! ACAATATTCTTTTACTAAGA+TGG + Chr4:2836796-2836815 None:intergenic 20.0%
!!! ACTAATTTTCTTTTCATGAT+TGG - Chr4:2835477-2835496 MsG0480018289.01.T01:intron 20.0%
!!! AGCATTTTAGATTAATTGAA+TGG + Chr4:2834957-2834976 None:intergenic 20.0%
!!! AGTGTTTGGAATATATTAAT+AGG - Chr4:2835504-2835523 MsG0480018289.01.T01:intron 20.0%
!!! ATTTTAGTTCGTTTCTATTT+AGG - Chr4:2838706-2838725 MsG0480018289.01.T01:CDS 20.0%
!!! CAATCAATTGTTTATTTTGT+GGG - Chr4:2837933-2837952 MsG0480018289.01.T01:intron 20.0%
!!! GCACATTTTGTTTTTTTTAA+TGG - Chr4:2835211-2835230 MsG0480018289.01.T01:intron 20.0%
!!! TCAATCAATTGTTTATTTTG+TGG - Chr4:2837932-2837951 MsG0480018289.01.T01:intron 20.0%
!!! TTTTACTGTTCTCTAATTTT+AGG - Chr4:2838753-2838772 MsG0480018289.01.T01:CDS 20.0%
!!! TTTTCAATTAGTTTATGTTG+GGG + Chr4:2837686-2837705 None:intergenic 20.0%
! AAAATTACAACTTCCAACAT+AGG + Chr4:2837093-2837112 None:intergenic 25.0%
! AAATTCTATAACCTGTTCAT+GGG - Chr4:2838104-2838123 MsG0480018289.01.T01:CDS 25.0%
! AACATACAAATCTTCTATTG+AGG + Chr4:2835700-2835719 None:intergenic 25.0%
! AAGAATTTAATCAGGATCAA+TGG + Chr4:2837176-2837195 None:intergenic 25.0%
! AATATAGAGTTATAAACCAC+AGG + Chr4:2834912-2834931 None:intergenic 25.0%
! AATATCATTCACATCGAAAT+AGG - Chr4:2836941-2836960 MsG0480018289.01.T01:intron 25.0%
! ACACTTGTCTAAATATGTAA+TGG - Chr4:2838379-2838398 MsG0480018289.01.T01:CDS 25.0%
! ACCATTCCAAATTATATTGA+AGG + Chr4:2837248-2837267 None:intergenic 25.0%
! AGAAACGAACTAAAATTAGA+GGG + Chr4:2838702-2838721 None:intergenic 25.0%
! ATCACAGAAAGAATTTAATC+AGG + Chr4:2837472-2837491 None:intergenic 25.0%
! ATCATCGTATCATAACTAAA+AGG + Chr4:2833958-2833977 None:intergenic 25.0%
! ATTGACAACACTTTATACTA+AGG + Chr4:2834432-2834451 None:intergenic 25.0%
! ATTGGGTATTATTATGAAGA+TGG - Chr4:2836574-2836593 MsG0480018289.01.T01:CDS 25.0%
! CTATGTTTGGTAAAAAATAG+TGG - Chr4:2834120-2834139 MsG0480018289.01.T01:intron 25.0%
! CTTATCATTGATACTAGATA+AGG - Chr4:2834174-2834193 MsG0480018289.01.T01:intron 25.0%
! CTTATGAGAAATGAAATACT+AGG + Chr4:2837051-2837070 None:intergenic 25.0%
! GGTTAATTCAAAATATCAAG+CGG + Chr4:2835149-2835168 None:intergenic 25.0%
! GTTCGATATTAAATTTAGAC+GGG - Chr4:2835431-2835450 MsG0480018289.01.T01:intron 25.0%
! TAAATTCTATAACCTGTTCA+TGG - Chr4:2838103-2838122 MsG0480018289.01.T01:CDS 25.0%
! TAGAAACGAACTAAAATTAG+AGG + Chr4:2838703-2838722 None:intergenic 25.0%
! TATGTTGGGGTTTATTTAAT+TGG + Chr4:2837673-2837692 None:intergenic 25.0%
! TCACAGAAAGAATTTAATCA+GGG + Chr4:2837471-2837490 None:intergenic 25.0%
! TGATACAAGAAATATTACGA+TGG + Chr4:2837972-2837991 None:intergenic 25.0%
! TTATATATGCATGGTGAATT+AGG - Chr4:2833656-2833675 MsG0480018289.01.T01:intron 25.0%
! TTATTGTTACTCATGTCTAT+GGG + Chr4:2836683-2836702 None:intergenic 25.0%
! TTCGTACAGAAAAAAAGAAA+AGG + Chr4:2837838-2837857 None:intergenic 25.0%
! TTCTTGTATCATATTGGAAA+TGG - Chr4:2837981-2838000 MsG0480018289.01.T01:intron 25.0%
! TTGCTACATAAACAATATGT+TGG + Chr4:2836488-2836507 None:intergenic 25.0%
! TTGGGTATTATTATGAAGAT+GGG - Chr4:2836575-2836594 MsG0480018289.01.T01:CDS 25.0%
! TTTAATCTTTACCAGTTAAC+TGG - Chr4:2836315-2836334 MsG0480018289.01.T01:intron 25.0%
!! AAAGAATATTGTTGGTAGAT+TGG - Chr4:2836804-2836823 MsG0480018289.01.T01:intron 25.0%
!! AATATGTAATGGAAATAGAG+AGG - Chr4:2838390-2838409 MsG0480018289.01.T01:CDS 25.0%
!! ATATGTAATGGAAATAGAGA+GGG - Chr4:2838391-2838410 MsG0480018289.01.T01:CDS 25.0%
!! ATTTTACAGACTATGAAAAC+TGG + Chr4:2835838-2835857 None:intergenic 25.0%
!! CATCATCATTAGTTTAACAT+GGG - Chr4:2837129-2837148 MsG0480018289.01.T01:CDS 25.0%
!! GTTGAACACTTTATTTGTAT+CGG + Chr4:2833810-2833829 None:intergenic 25.0%
!! TAATAGATGGAATGTTTTAC+AGG - Chr4:2837000-2837019 MsG0480018289.01.T01:intron 25.0%
!! TCATCATCATTAGTTTAACA+TGG - Chr4:2837128-2837147 MsG0480018289.01.T01:intron 25.0%
!! TGCCTGATTTAGTTTAATTA+TGG - Chr4:2837895-2837914 MsG0480018289.01.T01:intron 25.0%
!! TGTGCCAAACAAATATATTT+TGG - Chr4:2834348-2834367 MsG0480018289.01.T01:CDS 25.0%
!!! AACATTCTAAGGTTTCAATT+CGG + Chr4:2838259-2838278 None:intergenic 25.0%
!!! AATTTTCAATTTTTCAGCAG+AGG + Chr4:2835307-2835326 None:intergenic 25.0%
!!! AGTATAAAGTGTTGTCAATT+AGG - Chr4:2834433-2834452 MsG0480018289.01.T01:intron 25.0%
!!! CAAATATATTTTGGTCATAG+GGG - Chr4:2834357-2834376 MsG0480018289.01.T01:CDS 25.0%
!!! CTCATAGTTGATAAATTAGT+GGG - Chr4:2834219-2834238 MsG0480018289.01.T01:intron 25.0%
!!! GTATAAAGTGTTGTCAATTA+GGG - Chr4:2834434-2834453 MsG0480018289.01.T01:intron 25.0%
!!! GTATTGATAATGTTATGAGT+TGG - Chr4:2838852-2838871 MsG0480018289.01.T01:five_prime_UTR 25.0%
!!! TACTAACATGAAGCTTTATT+AGG + Chr4:2833881-2833900 None:intergenic 25.0%
!!! TATAAAGTGTTGTCAATTAG+GGG - Chr4:2834435-2834454 MsG0480018289.01.T01:intron 25.0%
!!! TCGTTTCTATTTAGGATTTT+AGG - Chr4:2838714-2838733 MsG0480018289.01.T01:CDS 25.0%
!!! TTGAGTTGTATGATTTGTTA+TGG - Chr4:2838802-2838821 MsG0480018289.01.T01:CDS 25.0%
!!! TTGTTTTGCAATACATGTTT+AGG - Chr4:2834097-2834116 MsG0480018289.01.T01:intron 25.0%
AACACTTGTAGAAGCAAATA+TGG + Chr4:2837782-2837801 None:intergenic 30.0%
AATAATTCATGTGACTAGTG+AGG + Chr4:2837372-2837391 None:intergenic 30.0%
AATCAAATGTATTCACTACG+AGG - Chr4:2838463-2838482 MsG0480018289.01.T01:CDS 30.0%
AATCAACAAATAGCAAGAGA+TGG + Chr4:2835093-2835112 None:intergenic 30.0%
AATTCTTTCTGTGATGCTTT+AGG - Chr4:2837477-2837496 MsG0480018289.01.T01:intron 30.0%
ACTGTTAGGTTATATATGCA+TGG - Chr4:2833647-2833666 MsG0480018289.01.T01:intron 30.0%
ACTTGATGAATTTCATCATG+AGG + Chr4:2835064-2835083 None:intergenic 30.0%
AGACAATTAAGATGGGTATT+GGG - Chr4:2836557-2836576 MsG0480018289.01.T01:intron 30.0%
ATACATGTTTAGGCTATGTT+TGG - Chr4:2834107-2834126 MsG0480018289.01.T01:intron 30.0%
ATATAGCATAAATCGAAGCA+AGG + Chr4:2837320-2837339 None:intergenic 30.0%
ATCATTGTATATTGCATCTC+TGG - Chr4:2834528-2834547 MsG0480018289.01.T01:intron 30.0%
ATCGGATATACTAACTCAAA+AGG + Chr4:2834028-2834047 None:intergenic 30.0%
ATTGAAAATTGAGCTGACAA+AGG - Chr4:2835317-2835336 MsG0480018289.01.T01:CDS 30.0%
CAACATAGAGTGGAAATATT+AGG + Chr4:2835255-2835274 None:intergenic 30.0%
CACAATGTTTGTACATCAAA+TGG + Chr4:2835726-2835745 None:intergenic 30.0%
CTTAGAGAGAACAAAACAAT+AGG + Chr4:2837587-2837606 None:intergenic 30.0%
GAAACGAACTAAAATTAGAG+GGG + Chr4:2838701-2838720 None:intergenic 30.0%
GAAATGGATAAATGAAGCTT+AGG - Chr4:2837997-2838016 MsG0480018289.01.T01:intron 30.0%
GCCTTCAATATAATTTGGAA+TGG - Chr4:2837244-2837263 MsG0480018289.01.T01:intron 30.0%
GTATCTCAGACAATTAAGAT+GGG - Chr4:2836550-2836569 MsG0480018289.01.T01:intron 30.0%
GTTATTGTTACTCATGTCTA+TGG + Chr4:2836684-2836703 None:intergenic 30.0%
TATTTGAATGTGCTTCTGTT+AGG - Chr4:2835874-2835893 MsG0480018289.01.T01:intron 30.0%
TCGGATATACTAACTCAAAA+GGG + Chr4:2834027-2834046 None:intergenic 30.0%
TGATGATAGATGCTTAATCT+TGG + Chr4:2835595-2835614 None:intergenic 30.0%
TGGAATGAATCATCAAGATT+TGG + Chr4:2838184-2838203 None:intergenic 30.0%
TGTATCTCAGACAATTAAGA+TGG - Chr4:2836549-2836568 MsG0480018289.01.T01:intron 30.0%
TGTGAACAAAATCTTAACCT+CGG - Chr4:2837222-2837241 MsG0480018289.01.T01:intron 30.0%
TTAGACTGGATAAAATCACT+GGG + Chr4:2837719-2837738 None:intergenic 30.0%
TTCCAACATAGGAACTAAAA+TGG + Chr4:2837082-2837101 None:intergenic 30.0%
TTTATCTCTCTGAACTTACA+GGG + Chr4:2836341-2836360 None:intergenic 30.0%
TTTGCTCAAGATATCATCTT+TGG + Chr4:2833276-2833295 None:intergenic 30.0%
! AGCTATGATTTTTATGACTC+TGG + Chr4:2836622-2836641 None:intergenic 30.0%
! ATGAATCATCAAGATTTGGT+AGG + Chr4:2838180-2838199 None:intergenic 30.0%
! GAAAAATATAAGTGATGGTG+TGG - Chr4:2834674-2834693 MsG0480018289.01.T01:intron 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG - Chr4:2834124-2834143 MsG0480018289.01.T01:intron 30.0%
! TAGTCTGTAAAATTTTCGTC+TGG - Chr4:2835845-2835864 MsG0480018289.01.T01:intron 30.0%
! TCATAACCAGTGTTGTTAAA+TGG - Chr4:2835974-2835993 MsG0480018289.01.T01:intron 30.0%
! TCTTTTTATAAAAGCTTCCG+AGG - Chr4:2836226-2836245 MsG0480018289.01.T01:intron 30.0%
! TTTTATCTCTCTGAACTTAC+AGG + Chr4:2836342-2836361 None:intergenic 30.0%
! TTTTCAACAAGATGCTCTTT+AGG + Chr4:2834767-2834786 None:intergenic 30.0%
!! ACAAATTTCTGAGGTTATAG+AGG + Chr4:2834395-2834414 None:intergenic 30.0%
!! ATAAATTAGTGGGTTGAATG+GGG - Chr4:2834229-2834248 MsG0480018289.01.T01:intron 30.0%
!! GATAAATTAGTGGGTTGAAT+GGG - Chr4:2834228-2834247 MsG0480018289.01.T01:intron 30.0%
!! GATATTTTGAATTAACCTCG+TGG - Chr4:2835152-2835171 MsG0480018289.01.T01:intron 30.0%
!! GCTCATAGTTGATAAATTAG+TGG - Chr4:2834218-2834237 MsG0480018289.01.T01:intron 30.0%
!! TAAAGAGCATCTTGTTGAAA+AGG - Chr4:2834766-2834785 MsG0480018289.01.T01:intron 30.0%
!! TGATAAATTAGTGGGTTGAA+TGG - Chr4:2834227-2834246 MsG0480018289.01.T01:intron 30.0%
!! TGTTTTGTTCTCTCTAAGTT+AGG - Chr4:2837589-2837608 MsG0480018289.01.T01:intron 30.0%
!! TTGCTATTTGTTGATTGCTT+TGG - Chr4:2835097-2835116 MsG0480018289.01.T01:intron 30.0%
!!! TGTGTTTATATGACGGATTT+TGG - Chr4:2836057-2836076 MsG0480018289.01.T01:intron 30.0%
AAAACAATAGGAATCCCAGT+CGG + Chr4:2837575-2837594 None:intergenic 35.0%
AAATATTCTGCAAAGGAGAC+TGG - Chr4:2836123-2836142 MsG0480018289.01.T01:intron 35.0%
AAATTGAGACCTCAAGTGAA+AGG - Chr4:2833692-2833711 MsG0480018289.01.T01:intron 35.0%
AATAGTAATACTAGCCAGAC+CGG + Chr4:2837444-2837463 None:intergenic 35.0%
AATATTCTGCAAAGGAGACT+GGG - Chr4:2836124-2836143 MsG0480018289.01.T01:intron 35.0%
ACATAGGAACTAAAATGGAG+TGG + Chr4:2837077-2837096 None:intergenic 35.0%
ATATACTTATAAAGCCCGAC+TGG - Chr4:2837630-2837649 MsG0480018289.01.T01:intron 35.0%
ATATTCAGTGTTGTCAATCG+CGG + Chr4:2834508-2834527 None:intergenic 35.0%
ATCTCAATCTCAATCTCACT+TGG - Chr4:2836437-2836456 MsG0480018289.01.T01:intron 35.0%
ATGTATTCACTACGAGGTAT+TGG - Chr4:2838469-2838488 MsG0480018289.01.T01:CDS 35.0%
ATTGATATGTTGTCCCTGAT+TGG - Chr4:2834713-2834732 MsG0480018289.01.T01:intron 35.0%
ATTGTTTATGTAGCAAGCTC+TGG - Chr4:2836492-2836511 MsG0480018289.01.T01:intron 35.0%
CAATTGTAGCTATCAGATGA+AGG + Chr4:2834870-2834889 None:intergenic 35.0%
CAGACAATTAAGATGGGTAT+TGG - Chr4:2836556-2836575 MsG0480018289.01.T01:intron 35.0%
CATTCTTCAGCATGGATATA+TGG + Chr4:2837808-2837827 None:intergenic 35.0%
CTCAAGTGAAAGGAAAAGAT+TGG - Chr4:2833702-2833721 MsG0480018289.01.T01:intron 35.0%
CTCGTAAGTCATAACGTTAT+CGG + Chr4:2838885-2838904 None:intergenic 35.0%
CTTAGACTGGATAAAATCAC+TGG + Chr4:2837720-2837739 None:intergenic 35.0%
CTTCACAAAATGCCTATAGT+GGG + Chr4:2836025-2836044 None:intergenic 35.0%
CTTCTGAGTTAACAGATCAT+CGG + Chr4:2833336-2833355 None:intergenic 35.0%
CTTTATACTAAGGCTCTGTT+TGG + Chr4:2834422-2834441 None:intergenic 35.0%
GATACGTCAAAAACTACCAT+CGG - Chr4:2833419-2833438 MsG0480018289.01.T01:intron 35.0%
GATTGAGATTGAGATTGAGA+TGG + Chr4:2836432-2836451 None:intergenic 35.0%
TAACGTTATGACTTACGAGT+TGG - Chr4:2838886-2838905 MsG0480018289.01.T01:five_prime_UTR 35.0%
TACATATCCTGAAACGAGAT+TGG + Chr4:2833362-2833381 None:intergenic 35.0%
TATCATCAGTTCTACACAAG+AGG - Chr4:2835607-2835626 MsG0480018289.01.T01:intron 35.0%
TATTCATTGCACACTAGGAT+GGG + Chr4:2837344-2837363 None:intergenic 35.0%
TCTCAATCTCAATCTCACTT+GGG - Chr4:2836438-2836457 MsG0480018289.01.T01:intron 35.0%
TCTTTGACTGGGAGTAATTA+AGG + Chr4:2837401-2837420 None:intergenic 35.0%
TGATAGCAATGGTTCAAAAG+AGG - Chr4:2837522-2837541 MsG0480018289.01.T01:intron 35.0%
TGGAGCTTAAATCACAATAC+AGG - Chr4:2838489-2838508 MsG0480018289.01.T01:CDS 35.0%
TTAATTACTCCCAGTCAAAG+AGG - Chr4:2837400-2837419 MsG0480018289.01.T01:intron 35.0%
TTTATAAAGCTCTTGCCAAG+TGG - Chr4:2834606-2834625 MsG0480018289.01.T01:intron 35.0%
TTTCCGTAATTGAGAGTTGT+AGG - Chr4:2835123-2835142 MsG0480018289.01.T01:intron 35.0%
TTTGGCAAGACAAATTTCTG+AGG + Chr4:2834404-2834423 None:intergenic 35.0%
! ACTATAGGCATTTTGTGAAG+GGG - Chr4:2836025-2836044 MsG0480018289.01.T01:intron 35.0%
! CAATCTTTTCCTTTCACTTG+AGG + Chr4:2833704-2833723 None:intergenic 35.0%
! CACTATAGGCATTTTGTGAA+GGG - Chr4:2836024-2836043 MsG0480018289.01.T01:intron 35.0%
! CATCATTAGTTTAACATGGG+TGG - Chr4:2837132-2837151 MsG0480018289.01.T01:CDS 35.0%
! CATTTCATCTTCCTCTAAAG+AGG - Chr4:2833998-2834017 MsG0480018289.01.T01:intron 35.0%
! CGGGCTTTATAAGTATATTC+TGG + Chr4:2837628-2837647 None:intergenic 35.0%
! GAGATTAGGGTTTTTGTGAT+TGG + Chr4:2833003-2833022 None:intergenic 35.0%
! TATTTTGCTTCACATGTCGA+TGG - Chr4:2835184-2835203 MsG0480018289.01.T01:intron 35.0%
!! GTTAAATGGCATTGGTTTAG+CGG - Chr4:2835988-2836007 MsG0480018289.01.T01:intron 35.0%
!! TCTGACTTGTTGTAAGGATT+CGG + Chr4:2833183-2833202 None:intergenic 35.0%
!!! CTCCATTTTAGTTCCTATGT+TGG - Chr4:2837077-2837096 MsG0480018289.01.T01:intron 35.0%
!!! GATTTTTTGACACCCACTAT+AGG - Chr4:2836010-2836029 MsG0480018289.01.T01:intron 35.0%
AAAATAATCCAGACACCACG+AGG + Chr4:2835170-2835189 None:intergenic 40.0%
AATTCATGTGACTAGTGAGG+AGG + Chr4:2837369-2837388 None:intergenic 40.0%
ACCAGTTCACTGAACTGTTA+TGG + Chr4:2838222-2838241 None:intergenic 40.0%
ACTGAACTGTTATGGCAGTT+CGG + Chr4:2838214-2838233 None:intergenic 40.0%
AGAGAATGGTGAATTGGTGA+TGG - Chr4:2838662-2838681 MsG0480018289.01.T01:CDS 40.0%
AGCAATCTTTCCTCTTTGAC+TGG + Chr4:2837413-2837432 None:intergenic 40.0%
AGCACCACAACAATTCAAGA+AGG + Chr4:2834845-2834864 None:intergenic 40.0%
AGTTCATGCAGCTTAGTCAA+TGG - Chr4:2837752-2837771 MsG0480018289.01.T01:intron 40.0%
ATAAAGCCCGACTGGTAAAT+CGG - Chr4:2837638-2837657 MsG0480018289.01.T01:intron 40.0%
ATAGGTCCACTATTGTGTAG+TGG - Chr4:2834460-2834479 MsG0480018289.01.T01:intron 40.0%
ATATTGCATCTCTGGTCATG+TGG - Chr4:2834536-2834555 MsG0480018289.01.T01:intron 40.0%
ATTCATGTGACTAGTGAGGA+GGG + Chr4:2837368-2837387 None:intergenic 40.0%
ATTGACTAAGCTGCATGAAC+TGG + Chr4:2837753-2837772 None:intergenic 40.0%
ATTGCTATCAAACCTTTCCG+AGG + Chr4:2837512-2837531 None:intergenic 40.0%
ATTGGACTTGATGTGATTCG+TGG - Chr4:2833458-2833477 MsG0480018289.01.T01:intron 40.0%
CAAAAGGGTTTCCTCTTTAG+AGG + Chr4:2834012-2834031 None:intergenic 40.0%
CCAAATTATATTGAAGGCCG+AGG + Chr4:2837242-2837261 None:intergenic 40.0%
CCAATCATGATCGTGCATTA+TGG + Chr4:2836151-2836170 None:intergenic 40.0%
CCAATGTTGTTAATGGCAGA+TGG + Chr4:2836083-2836102 None:intergenic 40.0%
CCAATTCCACTACACAATAG+TGG + Chr4:2834469-2834488 None:intergenic 40.0%
CCATAATGCACGATCATGAT+TGG - Chr4:2836148-2836167 MsG0480018289.01.T01:intron 40.0%
CCATCTGCCATTAACAACAT+TGG - Chr4:2836080-2836099 MsG0480018289.01.T01:intron 40.0%
CCTCGGCCTTCAATATAATT+TGG - Chr4:2837239-2837258 MsG0480018289.01.T01:intron 40.0%
CCTTCACAAAATGCCTATAG+TGG + Chr4:2836026-2836045 None:intergenic 40.0%
CTATTCATTGCACACTAGGA+TGG + Chr4:2837345-2837364 None:intergenic 40.0%
CTGTCCTTCTTGAATTGTTG+TGG - Chr4:2834838-2834857 MsG0480018289.01.T01:intron 40.0%
GAAAGATTGCTACATAGCTC+CGG - Chr4:2837422-2837441 MsG0480018289.01.T01:intron 40.0%
GACTGACATGGCTTAATAGA+TGG - Chr4:2836987-2837006 MsG0480018289.01.T01:intron 40.0%
GAGATTGAGATGGTAGACAA+CGG + Chr4:2836422-2836441 None:intergenic 40.0%
GATGATAGACTAGAGAAGCT+TGG - Chr4:2833975-2833994 MsG0480018289.01.T01:intron 40.0%
GATGTTTGGGAAGGAGATAA+GGG - Chr4:2833586-2833605 MsG0480018289.01.T01:intron 40.0%
GCAATCTTTCCTCTTTGACT+GGG + Chr4:2837412-2837431 None:intergenic 40.0%
GCAGTGGTGTGTTTATATGA+CGG - Chr4:2836050-2836069 MsG0480018289.01.T01:intron 40.0%
GCATAATAAAGACCCCTTCA+CGG - Chr4:2838521-2838540 MsG0480018289.01.T01:CDS 40.0%
GGTGTGACCAATGTTGTTAA+TGG + Chr4:2836090-2836109 None:intergenic 40.0%
GTACTGGAATCAACATAGAG+TGG + Chr4:2835265-2835284 None:intergenic 40.0%
GTCATATAAACACACCACTG+CGG + Chr4:2836051-2836070 None:intergenic 40.0%
GTTAACAGATCATCGGAAAC+CGG + Chr4:2833329-2833348 None:intergenic 40.0%
GTTGAAATTTAGCCGTTCCA+GGG - Chr4:2836368-2836387 MsG0480018289.01.T01:intron 40.0%
GTTGAAGAAAGTGAGGGAAA+TGG - Chr4:2833751-2833770 MsG0480018289.01.T01:intron 40.0%
TAGCCAAGGTGAATGATTCA+GGG - Chr4:2833615-2833634 MsG0480018289.01.T01:intron 40.0%
TCAACAAGATGCTCTTTAGG+AGG + Chr4:2834764-2834783 None:intergenic 40.0%
TCATGATTGGATCGAGTGTT+TGG - Chr4:2835490-2835509 MsG0480018289.01.T01:intron 40.0%
TCCACCGTGAAAATCCTTTA+CGG + Chr4:2838557-2838576 None:intergenic 40.0%
TCTATAACCTGTTCATGGGT+TGG - Chr4:2838108-2838127 MsG0480018289.01.T01:CDS 40.0%
TGAATGTGCTTCTGTTAGGT+AGG - Chr4:2835878-2835897 MsG0480018289.01.T01:intron 40.0%
TGACTGGGAGTAATTAAGGA+CGG + Chr4:2837397-2837416 None:intergenic 40.0%
TGAGAGGTTGAAGAAAGTGA+GGG - Chr4:2833745-2833764 MsG0480018289.01.T01:intron 40.0%
TGATAAGTTCATTCGCTGTC+AGG + Chr4:2834161-2834180 None:intergenic 40.0%
TGGTAGATTGGATGAAAGCT+GGG - Chr4:2836816-2836835 MsG0480018289.01.T01:intron 40.0%
TGTTACCGGATTCGATGTTT+GGG - Chr4:2833573-2833592 MsG0480018289.01.T01:intron 40.0%
TGTTGAAATTTAGCCGTTCC+AGG - Chr4:2836367-2836386 MsG0480018289.01.T01:intron 40.0%
TGTTGTCAATTAGGGGCTAT+AGG - Chr4:2834442-2834461 MsG0480018289.01.T01:intron 40.0%
TTAGCCAAGGTGAATGATTC+AGG - Chr4:2833614-2833633 MsG0480018289.01.T01:intron 40.0%
TTGGTAGATTGGATGAAAGC+TGG - Chr4:2836815-2836834 MsG0480018289.01.T01:intron 40.0%
TTGTTACCGGATTCGATGTT+TGG - Chr4:2833572-2833591 MsG0480018289.01.T01:intron 40.0%
TTGTTGTAAGGATTCGGAGA+AGG + Chr4:2833177-2833196 None:intergenic 40.0%
! AGAGGGGTTTTTGTGAGATT+AGG + Chr4:2833017-2833036 None:intergenic 40.0%
! AGTTTTTGACGTATCCGAAG+CGG + Chr4:2833414-2833433 None:intergenic 40.0%
! CCAATGCCATTTAACAACAC+TGG + Chr4:2835983-2836002 None:intergenic 40.0%
! CCACTATAGGCATTTTGTGA+AGG - Chr4:2836023-2836042 MsG0480018289.01.T01:intron 40.0%
! CCACTATTGTGTAGTGGAAT+TGG - Chr4:2834466-2834485 MsG0480018289.01.T01:intron 40.0%
! CCAGTGTTGTTAAATGGCAT+TGG - Chr4:2835980-2835999 MsG0480018289.01.T01:intron 40.0%
! GAGGGGTTTTTGTGAGATTA+GGG + Chr4:2833016-2833035 None:intergenic 40.0%
! GATGCCGTAAAGGATTTTCA+CGG - Chr4:2838550-2838569 MsG0480018289.01.T01:CDS 40.0%
! GTGAATGATTCAGGGAGTTT+TGG - Chr4:2833623-2833642 MsG0480018289.01.T01:intron 40.0%
! TCGGAAAGGTTTGATAGCAA+TGG - Chr4:2837511-2837530 MsG0480018289.01.T01:intron 40.0%
! TGTAATGGAAATAGAGAGGG+AGG - Chr4:2838394-2838413 MsG0480018289.01.T01:CDS 40.0%
! TGTTATCTGGGTGAAAGTAC+TGG + Chr4:2835281-2835300 None:intergenic 40.0%
!! AGAGTAGGATTTGGGTTTTG+TGG + Chr4:2833087-2833106 None:intergenic 40.0%
!! TGAGCTTCTGACTTGTTGTA+AGG + Chr4:2833189-2833208 None:intergenic 40.0%
!!! TGGGTTTTGTGGTTTTGAGA+CGG + Chr4:2833076-2833095 None:intergenic 40.0%
!!! TTTTTTACACCCCTACCGTA+TGG - Chr4:2835944-2835963 MsG0480018289.01.T01:intron 40.0%
AAAAGCTTCCGAGGAATGCT+AGG - Chr4:2836235-2836254 MsG0480018289.01.T01:intron 45.0%
AAAGCTTCCGAGGAATGCTA+GGG - Chr4:2836236-2836255 MsG0480018289.01.T01:intron 45.0%
AAATTCGACGAATCAGACGC+CGG - Chr4:2833499-2833518 MsG0480018289.01.T01:intron 45.0%
AACGTCAAAGTCAAAGCCTG+TGG - Chr4:2834893-2834912 MsG0480018289.01.T01:intron 45.0%
AACTTACAGGGCCAGTTAAC+TGG + Chr4:2836329-2836348 None:intergenic 45.0%
AATACCTCAGAAGAACCGAC+TGG - Chr4:2837557-2837576 MsG0480018289.01.T01:intron 45.0%
AATATGTCACCGGGGAATAG+TGG - Chr4:2833542-2833561 MsG0480018289.01.T01:intron 45.0%
ACGTCAAAAACTACCATCGG+TGG - Chr4:2833422-2833441 MsG0480018289.01.T01:intron 45.0%
ACTCCCTGAATCATTCACCT+TGG + Chr4:2833621-2833640 None:intergenic 45.0%
AGATGGTAGACAACGGAAAG+CGG + Chr4:2836415-2836434 None:intergenic 45.0%
AGATGTCCGAGTCAGATTGA+TGG - Chr4:2835355-2835374 MsG0480018289.01.T01:intron 45.0%
AGGGCTATTCATTGCACACT+AGG + Chr4:2837349-2837368 None:intergenic 45.0%
AGGGTTGTGGTCATGTTGTA+AGG - Chr4:2834629-2834648 MsG0480018289.01.T01:intron 45.0%
ATAAAGCTCTTGCCAAGTGG+AGG - Chr4:2834609-2834628 MsG0480018289.01.T01:intron 45.0%
ATACCTCAGAAGAACCGACT+GGG - Chr4:2837558-2837577 MsG0480018289.01.T01:intron 45.0%
ATATGTCACCGGGGAATAGT+GGG - Chr4:2833543-2833562 MsG0480018289.01.T01:intron 45.0%
CAGCAGAGGACATGTTATCT+GGG + Chr4:2835293-2835312 None:intergenic 45.0%
CGAGACAGAGAATGGTGAAT+TGG - Chr4:2838656-2838675 MsG0480018289.01.T01:CDS 45.0%
CGATGTTTGGGAAGGAGATA+AGG - Chr4:2833585-2833604 MsG0480018289.01.T01:intron 45.0%
CGGCCTACAACTCTCAATTA+CGG + Chr4:2835129-2835148 None:intergenic 45.0%
CTAGATAAGGCAGCTGATAG+CGG - Chr4:2834187-2834206 MsG0480018289.01.T01:intron 45.0%
CTATTCCCCGGTGACATATT+CGG + Chr4:2833542-2833561 None:intergenic 45.0%
CTGGAGATGGTGAGTATAGA+AGG - Chr4:2836909-2836928 MsG0480018289.01.T01:intron 45.0%
CTTCAACCTCTCACTCAACT+CGG + Chr4:2833738-2833757 None:intergenic 45.0%
GAAGAAGCCAATCTCGTTTC+AGG - Chr4:2833352-2833371 MsG0480018289.01.T01:intron 45.0%
GAGCAACACATTCTTCAGCA+TGG + Chr4:2837816-2837835 None:intergenic 45.0%
GATATGTTGTCCCTGATTGG+TGG - Chr4:2834716-2834735 MsG0480018289.01.T01:intron 45.0%
GCCATAACAGTTCAGTGAAC+TGG - Chr4:2838218-2838237 MsG0480018289.01.T01:CDS 45.0%
GGTAGATTGGATGAAAGCTG+GGG - Chr4:2836817-2836836 MsG0480018289.01.T01:intron 45.0%
GGTTATGATGACTCGCCATA+CGG + Chr4:2835962-2835981 None:intergenic 45.0%
GTGAGAGGTTGAAGAAAGTG+AGG - Chr4:2833744-2833763 MsG0480018289.01.T01:intron 45.0%
TAAAGCCCGACTGGTAAATC+GGG - Chr4:2837639-2837658 MsG0480018289.01.T01:intron 45.0%
TAAAGCTCTTGCCAAGTGGA+GGG - Chr4:2834610-2834629 MsG0480018289.01.T01:intron 45.0%
TATGGCAGTTCGGTTCAGTT+TGG + Chr4:2838204-2838223 None:intergenic 45.0%
TCAAAAACTACCATCGGTGG+TGG - Chr4:2833425-2833444 MsG0480018289.01.T01:intron 45.0%
TCAGCAGAGGACATGTTATC+TGG + Chr4:2835294-2835313 None:intergenic 45.0%
TCCTTCCCAAACATCGAATC+CGG + Chr4:2833581-2833600 None:intergenic 45.0%
TCGACATTCGAGACAGAGAA+TGG - Chr4:2838648-2838667 MsG0480018289.01.T01:CDS 45.0%
TCGATCCAAAGATTCCGCTT+CGG - Chr4:2833397-2833416 MsG0480018289.01.T01:intron 45.0%
TGAATTAACCTCGTGGTGTC+TGG - Chr4:2835159-2835178 MsG0480018289.01.T01:intron 45.0%
TGCTTCACATGTCGATGGAT+AGG - Chr4:2835189-2835208 MsG0480018289.01.T01:intron 45.0%
TGGCTATCAGACACTTAGAC+TGG + Chr4:2837733-2837752 None:intergenic 45.0%
TGGGTGGACAATGTAATCTG+CGG - Chr4:2837148-2837167 MsG0480018289.01.T01:CDS 45.0%
TGTAAGGATTCGGAGAAGGA+GGG + Chr4:2833173-2833192 None:intergenic 45.0%
TGTATGACCCTAGCATTCCT+CGG + Chr4:2836246-2836265 None:intergenic 45.0%
TTGGGAAGGAGATAAGGGAT+AGG - Chr4:2833591-2833610 MsG0480018289.01.T01:intron 45.0%
TTGTAAGGATTCGGAGAAGG+AGG + Chr4:2833174-2833193 None:intergenic 45.0%
! AGTGGTGGAGAGTAGGATTT+GGG + Chr4:2833095-2833114 None:intergenic 45.0%
! GATAAGGGATAGGTTAGCCA+AGG - Chr4:2833601-2833620 MsG0480018289.01.T01:intron 45.0%
! GTTTATGTAGCAAGCTCTGG+TGG - Chr4:2836495-2836514 MsG0480018289.01.T01:intron 45.0%
! TTGCAAGAGCAGGACAGTTT+TGG - Chr4:2836880-2836899 MsG0480018289.01.T01:intron 45.0%
! TTGGATTCGCTTTGTTGCGA+GGG + Chr4:2833257-2833276 None:intergenic 45.0%
! TTTGGATTCGCTTTGTTGCG+AGG + Chr4:2833258-2833277 None:intergenic 45.0%
!! AGGAGAAGGTGTTGTGTTTG+AGG + Chr4:2833228-2833247 None:intergenic 45.0%
!! CAGGGAGTTTTGGTACTGTT+AGG - Chr4:2833633-2833652 MsG0480018289.01.T01:intron 45.0%
!! GAAGGTGTTGTGTTTGAGGT+TGG + Chr4:2833224-2833243 None:intergenic 45.0%
!! GCTTTAGGATGTGCATTCCT+CGG - Chr4:2837492-2837511 MsG0480018289.01.T01:intron 45.0%
!! TAGTGGGACGAGTTTGTTAC+CGG - Chr4:2833559-2833578 MsG0480018289.01.T01:intron 45.0%
!!! TGGTTTTGGAACGGAAGCTT+TGG + Chr4:2833301-2833320 None:intergenic 45.0%
AAACTCGTCCCACTATTCCC+CGG + Chr4:2833554-2833573 None:intergenic 50.0%
AAAGACCCCTTCACGGCATT+GGG - Chr4:2838528-2838547 MsG0480018289.01.T01:CDS 50.0%
ACCGGATTCGATGTTTGGGA+AGG - Chr4:2833577-2833596 MsG0480018289.01.T01:intron 50.0%
ACGTCACCCGATTTACCAGT+CGG + Chr4:2837648-2837667 None:intergenic 50.0%
AGCTTGGAGTTCCACCAATC+AGG + Chr4:2834730-2834749 None:intergenic 50.0%
AGGATGTGCATTCCTCGGAA+AGG - Chr4:2837497-2837516 MsG0480018289.01.T01:intron 50.0%
ATGATGACTCGCCATACGGT+AGG + Chr4:2835958-2835977 None:intergenic 50.0%
ATTGCTACATAGCTCCGGTC+TGG - Chr4:2837427-2837446 MsG0480018289.01.T01:intron 50.0%
CCAAGAGAACTTGCAAGAGC+AGG - Chr4:2836870-2836889 MsG0480018289.01.T01:intron 50.0%
CCTGCTCTTGCAAGTTCTCT+TGG + Chr4:2836873-2836892 None:intergenic 50.0%
CGTATCCGAAGCGGAATCTT+TGG + Chr4:2833405-2833424 None:intergenic 50.0%
CTCTGAACCAACCCATGAAC+AGG + Chr4:2838118-2838137 None:intergenic 50.0%
GACATATTCGGTCTCCACCT+CGG + Chr4:2833530-2833549 None:intergenic 50.0%
GATGGTAGACAACGGAAAGC+GGG + Chr4:2836414-2836433 None:intergenic 50.0%
GCAGAGCCATCAATCTGACT+CGG + Chr4:2835364-2835383 None:intergenic 50.0%
GCGTCGCTATTCGACAACAT+CGG + Chr4:2834046-2834065 None:intergenic 50.0%
GCTTGGAGTTCCACCAATCA+GGG + Chr4:2834729-2834748 None:intergenic 50.0%
GTGGAGACCGAATATGTCAC+CGG - Chr4:2833532-2833551 MsG0480018289.01.T01:intron 50.0%
GTTCAGCCATGTCTCAGTTC+TGG - Chr4:2838824-2838843 MsG0480018289.01.T01:CDS 50.0%
TAAAGACCCCTTCACGGCAT+TGG - Chr4:2838527-2838546 MsG0480018289.01.T01:CDS 50.0%
TGATGACTCGCCATACGGTA+GGG + Chr4:2835957-2835976 None:intergenic 50.0%
TGGAGACCGAATATGTCACC+GGG - Chr4:2833533-2833552 MsG0480018289.01.T01:intron 50.0%
! AAAACTACCATCGGTGGTGG+TGG - Chr4:2833428-2833447 MsG0480018289.01.T01:intron 50.0%
! AATCCCAGTCGGTTCTTCTG+AGG + Chr4:2837564-2837583 None:intergenic 50.0%
! GAGTGGTGGAGAGTAGGATT+TGG + Chr4:2833096-2833115 None:intergenic 50.0%
! GCCGTAAAGGATTTTCACGG+TGG - Chr4:2838553-2838572 MsG0480018289.01.T01:CDS 50.0%
! GGAGGCTTTGACAAGTAGCT+TGG + Chr4:2834746-2834765 None:intergenic 50.0%
!! AGAAGAAGCGCCATTGTTGG+GGG + Chr4:2833053-2833072 None:intergenic 50.0%
!! AGGACAGTTTTGGTGGAGAC+TGG - Chr4:2836890-2836909 MsG0480018289.01.T01:intron 50.0%
!! CAAGAGCAGGACAGTTTTGG+TGG - Chr4:2836883-2836902 MsG0480018289.01.T01:intron 50.0%
!! GAGAAGAAGCGCCATTGTTG+GGG + Chr4:2833054-2833073 None:intergenic 50.0%
!! GGAGAAGAAGCGCCATTGTT+GGG + Chr4:2833055-2833074 None:intergenic 50.0%
!! GTTTTGGTGGAGACTGGAGA+TGG - Chr4:2836896-2836915 MsG0480018289.01.T01:intron 50.0%
AGTTGGAGGTGGAGAAGAGG+TGG + Chr4:2833121-2833140 None:intergenic 55.0%
CATGACCACAACCCTCCACT+TGG + Chr4:2834624-2834643 None:intergenic 55.0%
CGGTAGCCAGAACTGAGACA+TGG + Chr4:2838833-2838852 None:intergenic 55.0%
CGTCACCCGATTTACCAGTC+GGG + Chr4:2837647-2837666 None:intergenic 55.0%
CTCTTCTCCACCTCCAACTC+CGG - Chr4:2833122-2833141 MsG0480018289.01.T01:intron 55.0%
CTTTGTTGCGAGGGAGAGAG+AGG + Chr4:2833248-2833267 None:intergenic 55.0%
GATGACTCGCCATACGGTAG+GGG + Chr4:2835956-2835975 None:intergenic 55.0%
GGAGACCGAATATGTCACCG+GGG - Chr4:2833534-2833553 MsG0480018289.01.T01:intron 55.0%
GGGGTGGAGCAAGAGAAAGA+GGG + Chr4:2833034-2833053 None:intergenic 55.0%
GGGTGGAGCAAGAGAAAGAG+GGG + Chr4:2833033-2833052 None:intergenic 55.0%
GTGGAGATGAGACCCTGGAA+CGG + Chr4:2836383-2836402 None:intergenic 55.0%
TCCAACTCCGGCGACAATGA+CGG - Chr4:2833134-2833153 MsG0480018289.01.T01:intron 55.0%
TCTTGCCAAGTGGAGGGTTG+TGG - Chr4:2834616-2834635 MsG0480018289.01.T01:intron 55.0%
TCTTGCTCCACCCCCAACAA+TGG - Chr4:2833040-2833059 MsG0480018289.01.T01:CDS 55.0%
! ACGGCATTGGGATGCCGTAA+AGG - Chr4:2838540-2838559 MsG0480018289.01.T01:CDS 55.0%
! ATTTTGTGAAGGGGCCGCAG+TGG - Chr4:2836034-2836053 MsG0480018289.01.T01:intron 55.0%
! CGATTGCCGAGTTGAGTGAG+AGG - Chr4:2833729-2833748 MsG0480018289.01.T01:intron 55.0%
! GATGGCTCTGCTCGTGTTCA+AGG - Chr4:2835373-2835392 MsG0480018289.01.T01:intron 55.0%
!! CGGAGAAGAAGCGCCATTGT+TGG + Chr4:2833056-2833075 None:intergenic 55.0%
AACTCCGGCGACAATGACGG+TGG - Chr4:2833137-2833156 MsG0480018289.01.T01:intron 60.0%
ACCGTCATTGTCGCCGGAGT+TGG + Chr4:2833138-2833157 None:intergenic 60.0%
ACGGCATCCCAATGCCGTGA+AGG + Chr4:2838538-2838557 None:intergenic 60.0%
ATCATCGGAAACCGGCGCAG+TGG + Chr4:2833321-2833340 None:intergenic 60.0%
ATTGTCGCCGGAGTTGGAGG+TGG + Chr4:2833132-2833151 None:intergenic 60.0%
CCGTTCCAAAACCACTGCGC+CGG - Chr4:2833307-2833326 MsG0480018289.01.T01:intron 60.0%
CGGAGTTGGAGGTGGAGAAG+AGG + Chr4:2833124-2833143 None:intergenic 60.0%
CGGCATCCCAATGCCGTGAA+GGG + Chr4:2838537-2838556 None:intergenic 60.0%
GGCATCCCAATGCCGTGAAG+GGG + Chr4:2838536-2838555 None:intergenic 60.0%
GGGGGTGGAGCAAGAGAAAG+AGG + Chr4:2833035-2833054 None:intergenic 60.0%
GTCATTGTCGCCGGAGTTGG+AGG + Chr4:2833135-2833154 None:intergenic 60.0%
GTGTCGTGGAGATGAGACCC+TGG + Chr4:2836388-2836407 None:intergenic 60.0%
TGCGAGGGAGAGAGAGGAGA+AGG + Chr4:2833242-2833261 None:intergenic 60.0%
TGGAGGTGGAGAAGAGGTGG+TGG + Chr4:2833118-2833137 None:intergenic 60.0%
! GGAAACCGGCGCAGTGGTTT+TGG + Chr4:2833315-2833334 None:intergenic 60.0%
! GTGGTGGAGTGGTGGAGAGT+AGG + Chr4:2833102-2833121 None:intergenic 60.0%
!! ACTACCATCGGTGGTGGTGG+TGG - Chr4:2833431-2833450 MsG0480018289.01.T01:intron 60.0%
!! AGAAGCGCCATTGTTGGGGG+TGG + Chr4:2833050-2833069 None:intergenic 60.0%
!! CTACCATCGGTGGTGGTGGT+GGG - Chr4:2833432-2833451 MsG0480018289.01.T01:intron 60.0%
!! GAGAAGAGGTGGTGGAGTGG+TGG + Chr4:2833110-2833129 None:intergenic 60.0%
!! GTGGAGAAGAGGTGGTGGAG+TGG + Chr4:2833113-2833132 None:intergenic 60.0%
!! TACCATCGGTGGTGGTGGTG+GGG - Chr4:2833433-2833452 MsG0480018289.01.T01:intron 60.0%
!!! CCGGCGCAGTGGTTTTGGAA+CGG + Chr4:2833310-2833329 None:intergenic 60.0%
GTCGCCACCGTCATTGTCGC+CGG + Chr4:2833144-2833163 None:intergenic 65.0%
!! ACCATCGGTGGTGGTGGTGG+GGG - Chr4:2833434-2833453 MsG0480018289.01.T01:intron 65.0%
!! GGTGGTGGTGGTGGGGGTAT+TGG - Chr4:2833440-2833459 MsG0480018289.01.T01:intron 65.0%
ACCCCCACCACCACCACCGA+TGG + Chr4:2833438-2833457 None:intergenic 70.0%
ATCAGACGCCGGTGACGCCG+AGG - Chr4:2833510-2833529 MsG0480018289.01.T01:intron 70.0%
GGTCTCCACCTCGGCGTCAC+CGG + Chr4:2833521-2833540 None:intergenic 70.0%
! CGGAAAGCGGGCTCGTGTCG+TGG + Chr4:2836402-2836421 None:intergenic 70.0%
AGACGCCGGTGACGCCGAGG+TGG - Chr4:2833513-2833532 MsG0480018289.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2832976 2838931 2832976 ID=MsG0480018289.01;Name=MsG0480018289.01
Chr4 mRNA 2832976 2838931 2832976 ID=MsG0480018289.01.T01;Parent=MsG0480018289.01;Name=MsG0480018289.01.T01;_AED=0.40;_eAED=0.40;_QI=83|0.16|0.28|0.71|1|1|7|0|453
Chr4 exon 2832976 2833077 2832976 ID=MsG0480018289.01.T01:exon:1260;Parent=MsG0480018289.01.T01
Chr4 exon 2834256 2834408 2834256 ID=MsG0480018289.01.T01:exon:1259;Parent=MsG0480018289.01.T01
Chr4 exon 2835261 2835348 2835261 ID=MsG0480018289.01.T01:exon:1258;Parent=MsG0480018289.01.T01
Chr4 exon 2836279 2836331 2836279 ID=MsG0480018289.01.T01:exon:1257;Parent=MsG0480018289.01.T01
Chr4 exon 2836569 2836625 2836569 ID=MsG0480018289.01.T01:exon:1256;Parent=MsG0480018289.01.T01
Chr4 exon 2837129 2837202 2837129 ID=MsG0480018289.01.T01:exon:1255;Parent=MsG0480018289.01.T01
Chr4 exon 2838014 2838931 2838014 ID=MsG0480018289.01.T01:exon:1254;Parent=MsG0480018289.01.T01
Chr4 five_prime_UTR 2838849 2838931 2838849 ID=MsG0480018289.01.T01:five_prime_utr;Parent=MsG0480018289.01.T01
Chr4 CDS 2838014 2838848 2838014 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2837129 2837202 2837129 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2836569 2836625 2836569 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2836279 2836331 2836279 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2835261 2835348 2835261 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2834256 2834408 2834256 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Chr4 CDS 2832976 2833077 2832976 ID=MsG0480018289.01.T01:cds;Parent=MsG0480018289.01.T01
Gene Sequence

>MsG0480018289.01.T01

ATGGCGCTTCTTCTCCGTCTCAAAACCACAAAACCCAAATCCTACTCTCCACCACTCCACCACCTCTTCTCCACCTCCAACTCCGGCGACAATGACGGTGGCGACAAAAAACCCTCCTTCTCCGAATCCTTACAACAAGTCAGAAGCTCATTCAAACAACAACCAACCTCAAACACAACACCTTCTCCTCTCTCTCCCTCGCAACAAAGCGAATCCAAAGATGATATCTTGAGCAAAATCCAAAGCTTCCGTTCCAAAACCACTGCGCCGGTTTCCGATGATCTGTTAACTCAGAAGAAGCCAATCTCGTTTCAGGATATGTATAGTAGAATGCATAATCGATCCAAAGATTCCGCTTCGGATACGTCAAAAACTACCATCGGTGGTGGTGGTGGGGGTATTGGACTTGATGTGATTCGTGGAAGTTTAAATCAGCTGAAAAATTCGACGAATCAGACGCCGGTGACGCCGAGGTGGAGACCGAATATGTCACCGGGGAATAGTGGGACGAGTTTGTTACCGGATTCGATGTTTGGGAAGGAGATAAGGGATAGGTTAGCCAAGGTGAATGATTCAGGGAGTTTTGGTACTGTTAGGTTATATATGCATGGTGAATTAGGTGAGAAATTGAAGAAATTGAGACCTCAAGTGAAAGGAAAAGATTGGTTTTCGATTGCCGAGTTGAGTGAGAGGTTGAAGAAAGTGAGGGAAATGGATGAAATTGAAGCTAAGTCGAGTAAATCTAGTGCCGATACAAATAAAGTGTTCAACATTTTGAAAGATTCTGTTCAACATATCAAAGCTAAAGAAGCTGAGAAACCTAATAAAGCTTCATCGCAGAGAATTGATATGTTGTCCCTGATTGGTGGAACTCCAAGCTACTTGTCAAAGCCTCCTAAAGAGCATCTTTACTTTCACCCAGATAACATGTCCTCTGCTGAAAAATTGAAAATTGAGCTGACAAAGTTTGCGACACTGACAACCAAGATTAAGCATCTATCATCAGTTCTACACAAGAGACAATTAAGATGGGTATTGGGTATTATTATGAAGATGGGTAAATTCAATTGCAATCTTAGCCAGAGTCATAAAAATCATAGCTTAAAGGATGTGCATTCCTCGGAAAGGTTTGATAGCAATGGTTCAAAAGAGGAAAAAGTTGAGAAATACCTCAGAAGAACCGACTGGGATTCCTATTGTTTTGTTCTCTCTAAGTTAGGTCTACGTGATAATCCAGAATATACTTATAAAGCCCGACTGCCATGTCTCAGTTCTGGCTACCGTATTGATAATGTTATGAGTTGGTTCAATTCCGATAACGTTATGACTTACGAGTTGGTTCAGTTCAGTGTAGTTCTCTAG

Protein sequence

>MsG0480018289.01.T01

MALLLRLKTTKPKSYSPPLHHLFSTSNSGDNDGGDKKPSFSESLQQVRSSFKQQPTSNTTPSPLSPSQQSESKDDILSKIQSFRSKTTAPVSDDLLTQKKPISFQDMYSRMHNRSKDSASDTSKTTIGGGGGGIGLDVIRGSLNQLKNSTNQTPVTPRWRPNMSPGNSGTSLLPDSMFGKEIRDRLAKVNDSGSFGTVRLYMHGELGEKLKKLRPQVKGKDWFSIAELSERLKKVREMDEIEAKSSKSSADTNKVFNILKDSVQHIKAKEAEKPNKASSQRIDMLSLIGGTPSYLSKPPKEHLYFHPDNMSSAEKLKIELTKFATLTTKIKHLSSVLHKRQLRWVLGIIMKMGKFNCNLSQSHKNHSLKDVHSSERFDSNGSKEEKVEKYLRRTDWDSYCFVLSKLGLRDNPEYTYKARLPCLSSGYRIDNVMSWFNSDNVMTYELVQFSVVL*