AlfalfaGEDB | Msa0465530

M. sativa cultivar zhongmu-4 / Msa0465530

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465530	XP_003601289.1	96.025	629	24	1	1	629	1	628	0.0	1213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465530	sp\|Q40161\|GP1_SOLLC	54.139	604	258	8	36	628	34	629	0.0	641

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465530	G7J5I4	96.025	629	24	1	1	629	1	628	0.0	1213

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0465530	0.801975	6.985036e-49	-8.615850e-47
Msa0000320	Msa0465530	0.816030	6.821649e-52	-8.615850e-47
Msa0001940	Msa0465530	0.820896	5.383559e-53	-8.615850e-47
Msa0002580	Msa0465530	0.836198	1.077235e-56	-8.615850e-47
Msa0005890	Msa0465530	0.809780	1.597398e-50	-8.615850e-47
Msa0017670	Msa0465530	0.835585	1.540606e-56	-8.615850e-47
Msa0017950	Msa0465530	0.826911	2.092207e-54	-8.615850e-47
Msa0019900	Msa0465530	0.817067	3.996205e-52	-8.615850e-47
Msa0025160	Msa0465530	0.831494	1.617008e-55	-8.615850e-47
Msa0025580	Msa0465530	0.806416	8.315660e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465530	MtrunA17_Chr3g0117791	96.025	629	24	1	1	629	1	628	0.0	1213
Msa0465530	MtrunA17_Chr5g0413591	50.863	637	286	5	3	628	9	629	0.0	620
Msa0465530	MtrunA17_Chr8g0365401	50.478	628	295	8	10	628	6	626	0.0	602
Msa0465530	MtrunA17_Chr8g0365381	49.608	637	290	12	14	628	16	643	0.0	592
Msa0465530	MtrunA17_Chr8g0365361	61.011	277	106	1	352	628	121	395	6.72e-122	367
Msa0465530	MtrunA17_Chr4g0076231	65.823	158	53	1	472	628	2	159	2.36e-77	243
Msa0465530	MtrunA17_Chr5g0412991	50.230	217	106	2	414	629	197	412	7.87e-72	237
Msa0465530	MtrunA17_Chr5g0412991	47.568	185	95	2	426	609	1	184	1.68e-51	183
Msa0465530	MtrunA17_Chr5g0412981	50.230	217	106	2	414	629	197	412	9.21e-72	237
Msa0465530	MtrunA17_Chr5g0412981	47.027	185	96	2	426	609	1	184	3.50e-51	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465530	AT1G23760.1	51.905	630	292	8	1	628	1	621	0.0	630
Msa0465530	AT1G70370.2	52.070	628	287	8	7	628	6	625	0.0	629
Msa0465530	AT1G70370.1	52.070	628	287	8	7	628	6	625	0.0	629
Msa0465530	AT1G60390.1	51.613	620	289	6	10	625	8	620	0.0	585
Msa0465530	AT5G25610.1	34.921	189	119	3	439	625	203	389	2.97e-27	114
Msa0465530	AT1G49320.1	31.551	187	119	4	449	627	94	279	1.04e-20	93.2

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Find 136 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACTGAAAATGTGAA+CGG	0.591603	3_3:+65933929	Msa0465530:CDS
AAAAGAAGCGTTTCACGCGC+GGG	0.508596	3_3:+65933760	Msa0465530:CDS
AAAAGCACATAGGACATTGG+GGG	0.690062	3_3:-65932152	None:intergenic
AAAAGTATCGGAACCGGAAA+CGG	0.427279	3_3:-65933303	None:intergenic
AAAATGTGAACGGGTCAAAA+AGG	0.347765	3_3:+65933939	Msa0465530:CDS
AAAATTCTCAAACTATGGCT+CGG	0.559945	3_3:+65932770	Msa0465530:CDS
AAACAACTGAAAATGTGAAC+GGG	0.509569	3_3:+65933930	Msa0465530:CDS
AAAGTCGAAGCAATGGACGG+TGG	0.689713	3_3:+65933977	Msa0465530:CDS
AACAATTTCAGCACAATCAG+TGG	0.580141	3_3:+65933563	Msa0465530:CDS
AACACAAACTTCACAAACTA+CGG	0.525394	3_3:+65932933	Msa0465530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAAAGTAAACAATGTCC+GGG	+	chr3_3:65932104-65932123	Msa0465530:five_prime_UTR	30.0%
AAAAAAGTAAACAATGTCCG+GGG	+	chr3_3:65932105-65932124	Msa0465530:five_prime_UTR	30.0%
CAAGTATGAAAATGAGAGTA+TGG	-	chr3_3:65932304-65932323	None:intergenic	30.0%
GGACAATAACAACTTAGTTA+AGG	-	chr3_3:65932357-65932376	None:intergenic	30.0%
TTTGTTTGAAGAGGTTTATG+AGG	-	chr3_3:65932614-65932633	None:intergenic	30.0%
TTATGGAGAATTGATGAGAA+GGG	-	chr3_3:65932639-65932658	None:intergenic	30.0%
ATTATGGAGAATTGATGAGA+AGG	-	chr3_3:65932640-65932659	None:intergenic	30.0%
AAAATTCTCAAACTATGGCT+CGG	+	chr3_3:65932770-65932789	Msa0465530:CDS	30.0%
TCATTCAAAAACTACTCCAA+CGG	+	chr3_3:65932813-65932832	Msa0465530:CDS	30.0%
AACACAAACTTCACAAACTA+CGG	+	chr3_3:65932933-65932952	Msa0465530:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	65932097	65934480	65932097	ID=Msa0465530;Name=Msa0465530
chr3_3	mRNA	65932097	65934480	65932097	ID=Msa0465530-mRNA-1;Parent=Msa0465530;Name=Msa0465530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=137\|1\|1\|1\|0\|0\|2\|207\|629
chr3_3	exon	65932097	65932281	65932097	ID=Msa0465530-mRNA-1:exon:14783;Parent=Msa0465530-mRNA-1
chr3_3	exon	65932432	65934480	65932432	ID=Msa0465530-mRNA-1:exon:14784;Parent=Msa0465530-mRNA-1
chr3_3	five_prime_UTR	65932097	65932233	65932097	ID=Msa0465530-mRNA-1:five_prime_utr;Parent=Msa0465530-mRNA-1
chr3_3	CDS	65932234	65932281	65932234	ID=Msa0465530-mRNA-1:cds;Parent=Msa0465530-mRNA-1
chr3_3	CDS	65932432	65934273	65932432	ID=Msa0465530-mRNA-1:cds;Parent=Msa0465530-mRNA-1
chr3_3	three_prime_UTR	65934274	65934480	65934274	ID=Msa0465530-mRNA-1:three_prime_utr;Parent=Msa0465530-mRNA-1

Gene Sequence

>Msa0465530

ATGAAAATTTACTTCACCTTCCTGTTCTTGTCGCTCTCTTTTTTCCATGTTTCTATAGCAACCATTGGCAAAACCCAAGAATATTCCTATTCCAAACAAAAGACAAACCCTTTCACTCCTAAAGCCTCACTCATTCGCCATTGGAACACAAAAATCTCCAACAAACTTCCAATCCCTCAATTTCTTCTATCTAAAGCTTCTCCTCTTACACCACAACACTACGCAAACCTCATAAACCTCTTCAAACAAAAACCCTTCTCATCAATTCTCCATAATACCCTCTGCTCCACACCATACTTATTCTGCTCCTTCGACCACCCAAACACACTTTACCAATCCACAAAAACCAACAAATCAGACTCAAACTTCGCCGTCTACTCAAACAAAAAATTCTCAAACTATGGCTCGGCTCGACTCGGCGGAGTTGACTCATTCAAAAACTACTCCAACGGTTTAAACACAAACAACGACTCGTTCAAAAAATACAGCTCAGGCTCAACTCGTCGCGGTGGAGAATTCAACAGCTACGCAGAAAACGGCAATGTAGCTAACACAAACTTCACAAACTACGGTTCCGGTTCAAATTCCGGCACCGGAGACTTCAAAAGCTACGATAAACTCGTTAATGTACCCAACCTCGGTTTCACCACCTACGACTCCGCCGCTAGCAACCACAAGTTATCTTTCTCAAGCTACGGTAACGATACAAATTCTGGATCTCAATCATTCAACAGCTACGGAAAACGCGTTCGTAGCGGTAGCAGCGATTTCATCAATTATGCAGTTAGTTCCAACATTCTTCAATCAACATTCACCGGTTACGGTGAATTAGGAACAGGAGGTGCAAACGATTCTTTCAAAGCGTACAGTTTCAACGGTAATAATCCAAAGAGTAGTTTCAAAGCTTACGGCACCGGTTCCGTTTCCGGTTCCGATACTTTTGTGAGTTACCGAAATCGCGCTAACGTCGGTGATGATTCGTTTCAAAGCTACGGTGCAAAATCGAAAGCCGGTGCTGCGTCATTTACGAATTATGGACAATCATTTAACGAAGGAAACGACACTTTCACTGAATATGGAAAAGGAGCTACGGGTAAAACCGCGTTTGGATTCAAATCTTATGGATTGGGACGAGCGTTTAAGGTATACAACAAAAACGGCGCGTCGTTTTCAGCGTATAACAATTTCAGCACAATCAGTGGCAAAAAAATCGTAAATAGATTTGTAGAACCAGGTAAATTTTTCAGAGAGTCGATGTTAAAAGAAGGAAATGTGATGATTATGCCAGATATTAGAGATAAAATGCCTGCAAGGTCGTTTTTACCCTTTTCTCTATCATCGAAATTACCATTTTCATCCTCGAGGTTGAGTGAGATAAAAGAAGCGTTTCACGCGCGGGATGGTTCAGCGACAGAGCGCGTGATAGTTAACGCGCTTAAAGAATGCGAGAGGGAACCGAGTGTGGGAGAAACAAAACGGTGCGTTGGATCAGCTGAGGGTATGATTGACTTTTCCGTTTCTATATTAGGTCCCAACGTGGTGGTGAAAACAACTGAAAATGTGAACGGGTCAAAAAGGACGGTGATGATTGGAAAAGTCGAAGCAATGGACGGTGGAAAAGTGATTAAATCAGTTTCATGTCATCAGAGTTTGTACCCTTATTTACTCTATTATTGTCACTCTGTCCCTAAAGTGAGAGTTTATGAAGCTGATATTCTTGACGTGGACTCTAAGTCAAAGATTAATCATGGTGTTGCCATCTGTCACATTGATACGTCATCGTGGGGTCCTAAACATGGTGCTTTTTTGGCGTTAGGGTCGGGACCTGGAAAAATTGAGGTGTGTCATTGGATTTTTGAGAATGATATGACGTGGACCACTTCTAGTTGA

Protein sequence

>Msa0465530

MKIYFTFLFLSLSFFHVSIATIGKTQEYSYSKQKTNPFTPKASLIRHWNTKISNKLPIPQFLLSKASPLTPQHYANLINLFKQKPFSSILHNTLCSTPYLFCSFDHPNTLYQSTKTNKSDSNFAVYSNKKFSNYGSARLGGVDSFKNYSNGLNTNNDSFKKYSSGSTRRGGEFNSYAENGNVANTNFTNYGSGSNSGTGDFKSYDKLVNVPNLGFTTYDSAASNHKLSFSSYGNDTNSGSQSFNSYGKRVRSGSSDFINYAVSSNILQSTFTGYGELGTGGANDSFKAYSFNGNNPKSSFKAYGTGSVSGSDTFVSYRNRANVGDDSFQSYGAKSKAGAASFTNYGQSFNEGNDTFTEYGKGATGKTAFGFKSYGLGRAFKVYNKNGASFSAYNNFSTISGKKIVNRFVEPGKFFRESMLKEGNVMIMPDIRDKMPARSFLPFSLSSKLPFSSSRLSEIKEAFHARDGSATERVIVNALKECEREPSVGETKRCVGSAEGMIDFSVSILGPNVVVKTTENVNGSKRTVMIGKVEAMDGGKVIKSVSCHQSLYPYLLYYCHSVPKVRVYEADILDVDSKSKINHGVAICHIDTSSWGPKHGAFLALGSGPGKIEVCHWIFENDMTWTTSS*