Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002140 | sp|P26690|6DCS_SOYBN | 62.222 | 315 | 115 | 4 | 2 | 315 | 3 | 314 | 4.16e-138 | 396 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002140 | Msa0021740 | 0.909230 | 7.163465e-82 | -8.615850e-47 |
| Msa0002140 | Msa0069930 | 0.809500 | 1.835087e-50 | -8.615850e-47 |
| Msa0002140 | Msa0104360 | 0.810791 | 9.671846e-51 | -8.615850e-47 |
| Msa0002140 | Msa0104390 | 0.815325 | 9.797220e-52 | -8.615850e-47 |
| Msa0002140 | Msa0135590 | 0.806227 | 9.114001e-50 | -8.615850e-47 |
| Msa0002140 | Msa0154240 | 0.831596 | 1.525971e-55 | -8.615850e-47 |
| Msa0002140 | Msa0160520 | 0.902905 | 6.006357e-79 | -8.615850e-47 |
| Msa0002140 | Msa0600820 | 0.810843 | 9.420808e-51 | -8.615850e-47 |
| Msa0002140 | Msa0691080 | 0.800805 | 1.212900e-48 | -8.615850e-47 |
| Msa0002140 | Msa0752580 | 0.816722 | 4.777354e-52 | -8.615850e-47 |
| Msa0002140 | Msa0754500 | 0.812671 | 3.769894e-51 | -8.615850e-47 |
| Msa0002140 | Msa0775580 | 0.808081 | 3.690902e-50 | -8.615850e-47 |
| Msa0002140 | Msa0813030 | 0.809347 | 1.978770e-50 | -8.615850e-47 |
| Msa0002140 | Msa0853500 | 0.817362 | 3.430786e-52 | -8.615850e-47 |
| Msa0002140 | Msa0984000 | 0.820020 | 8.553118e-53 | -8.615850e-47 |
| Msa0002140 | Msa1182830 | 0.810658 | 1.033213e-50 | -8.615850e-47 |
| Msa0002140 | Msa1225820 | 0.817507 | 3.182270e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002140 | MtrunA17_Chr1g0173621 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 636 |
| Msa0002140 | MtrunA17_Chr3g0121001 | 63.344 | 311 | 111 | 3 | 6 | 315 | 7 | 315 | 5.87e-142 | 403 |
| Msa0002140 | MtrunA17_Chr5g0447951 | 63.607 | 305 | 108 | 3 | 1 | 305 | 1 | 302 | 1.43e-129 | 372 |
| Msa0002140 | MtrunA17_Chr5g0447961 | 63.607 | 305 | 108 | 3 | 1 | 305 | 1 | 302 | 1.43e-129 | 372 |
| Msa0002140 | MtrunA17_Chr5g0447941 | 63.607 | 305 | 108 | 3 | 1 | 305 | 1 | 302 | 1.68e-129 | 371 |
| Msa0002140 | MtrunA17_Chr6g0479981 | 52.648 | 321 | 140 | 3 | 1 | 313 | 1 | 317 | 3.79e-112 | 327 |
| Msa0002140 | MtrunA17_Chr6g0480011 | 51.077 | 325 | 145 | 4 | 1 | 315 | 1 | 321 | 1.29e-109 | 321 |
| Msa0002140 | MtrunA17_Chr6g0480021 | 50.774 | 323 | 130 | 3 | 1 | 315 | 1 | 302 | 5.12e-107 | 314 |
| Msa0002140 | MtrunA17_Chr4g0018921 | 43.464 | 306 | 158 | 6 | 20 | 315 | 14 | 314 | 1.74e-85 | 259 |
| Msa0002140 | MtrunA17_Chr8g0368921 | 40.323 | 310 | 168 | 6 | 18 | 315 | 14 | 318 | 3.56e-76 | 236 |
| Msa0002140 | MtrunA17_Chr7g0239701 | 43.682 | 277 | 139 | 5 | 50 | 315 | 47 | 317 | 1.30e-72 | 227 |
| Msa0002140 | MtrunA17_Chr8g0368931 | 38.801 | 317 | 179 | 4 | 8 | 315 | 4 | 314 | 2.95e-72 | 226 |
| Msa0002140 | MtrunA17_Chr4g0009531 | 42.345 | 307 | 160 | 7 | 18 | 315 | 14 | 312 | 1.24e-67 | 214 |
| Msa0002140 | MtrunA17_Chr4g0036261 | 55.435 | 184 | 74 | 1 | 141 | 316 | 1 | 184 | 2.67e-66 | 206 |
| Msa0002140 | MtrunA17_Chr4g0036301 | 55.556 | 171 | 68 | 1 | 153 | 315 | 1 | 171 | 7.96e-61 | 191 |
| Msa0002140 | MtrunA17_Chr4g0009581 | 42.205 | 263 | 138 | 4 | 41 | 303 | 35 | 283 | 4.66e-60 | 194 |
| Msa0002140 | MtrunA17_Chr7g0243551 | 40.072 | 277 | 157 | 4 | 19 | 295 | 22 | 289 | 6.60e-60 | 193 |
| Msa0002140 | MtrunA17_Chr4g0036321 | 52.907 | 172 | 73 | 1 | 153 | 316 | 1 | 172 | 4.97e-57 | 182 |
| Msa0002140 | MtrunA17_Chr4g0036051 | 37.919 | 298 | 169 | 7 | 20 | 307 | 11 | 302 | 7.58e-57 | 186 |
| Msa0002140 | MtrunA17_Chr4g0009621 | 40.664 | 241 | 121 | 4 | 84 | 315 | 1 | 228 | 1.39e-45 | 154 |
| Msa0002140 | MtrunA17_Chr4g0036291 | 52.294 | 109 | 49 | 1 | 1 | 109 | 1 | 106 | 1.57e-32 | 116 |
| Msa0002140 | MtrunA17_Chr6g0479811 | 52.336 | 107 | 51 | 0 | 193 | 299 | 1 | 107 | 1.92e-32 | 116 |
| Msa0002140 | MtrunA17_Chr4g0036311 | 49.541 | 109 | 52 | 1 | 1 | 109 | 1 | 106 | 5.13e-31 | 112 |
| Msa0002140 | MtrunA17_Chr4g0036251 | 51.376 | 109 | 44 | 2 | 1 | 109 | 1 | 100 | 1.82e-29 | 108 |
| Msa0002140 | MtrunA17_Chr6g0479791 | 48.837 | 86 | 34 | 2 | 240 | 315 | 18 | 103 | 2.57e-19 | 81.6 |
| Msa0002140 | MtrunA17_Chr3g0095421 | 25.581 | 301 | 167 | 10 | 45 | 309 | 83 | 362 | 4.46e-16 | 78.2 |
| Msa0002140 | MtrunA17_Chr3g0127491 | 24.138 | 290 | 165 | 9 | 45 | 297 | 79 | 350 | 3.76e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002140 | AT1G59960.1 | 51.385 | 325 | 148 | 3 | 1 | 315 | 1 | 325 | 1.04e-122 | 355 |
| Msa0002140 | AT1G59950.1 | 55.410 | 305 | 127 | 2 | 20 | 315 | 15 | 319 | 2.25e-116 | 338 |
| Msa0002140 | AT5G62420.1 | 44.625 | 307 | 156 | 5 | 19 | 315 | 13 | 315 | 3.39e-85 | 259 |
| Msa0002140 | AT2G37770.2 | 44.366 | 284 | 146 | 3 | 41 | 315 | 34 | 314 | 2.66e-79 | 244 |
| Msa0002140 | AT2G37790.1 | 41.503 | 306 | 165 | 4 | 18 | 315 | 14 | 313 | 6.34e-79 | 243 |
| Msa0002140 | AT2G37760.2 | 41.368 | 307 | 161 | 4 | 18 | 315 | 14 | 310 | 1.24e-75 | 234 |
| Msa0002140 | AT2G37760.1 | 41.368 | 307 | 161 | 4 | 18 | 315 | 14 | 310 | 1.24e-75 | 234 |
| Msa0002140 | AT2G37760.5 | 42.908 | 282 | 151 | 3 | 18 | 299 | 14 | 285 | 1.50e-75 | 234 |
| Msa0002140 | AT2G37760.4 | 42.756 | 283 | 152 | 3 | 18 | 300 | 14 | 286 | 1.92e-75 | 233 |
| Msa0002140 | AT2G37760.3 | 42.756 | 283 | 152 | 3 | 18 | 300 | 14 | 286 | 1.92e-75 | 233 |
| Msa0002140 | AT3G53880.1 | 41.727 | 278 | 150 | 3 | 47 | 315 | 40 | 314 | 4.38e-74 | 231 |
| Msa0002140 | AT3G53880.2 | 42.857 | 252 | 141 | 2 | 47 | 298 | 40 | 288 | 2.74e-71 | 223 |
| Msa0002140 | AT5G01670.1 | 38.111 | 307 | 170 | 6 | 20 | 315 | 24 | 321 | 1.79e-69 | 219 |
| Msa0002140 | AT5G01670.2 | 35.030 | 334 | 170 | 7 | 20 | 315 | 24 | 348 | 1.93e-63 | 204 |
| Msa0002140 | AT2G37760.6 | 43.443 | 244 | 127 | 2 | 81 | 315 | 23 | 264 | 1.31e-62 | 199 |
| Msa0002140 | AT2G37760.7 | 43.443 | 244 | 127 | 2 | 81 | 315 | 23 | 264 | 1.31e-62 | 199 |
| Msa0002140 | AT2G21250.1 | 35.235 | 298 | 177 | 7 | 20 | 307 | 11 | 302 | 7.41e-60 | 194 |
| Msa0002140 | AT2G21260.1 | 36.111 | 288 | 168 | 6 | 20 | 297 | 11 | 292 | 1.95e-59 | 193 |
| Msa0002140 | AT2G37770.1 | 47.701 | 174 | 88 | 2 | 41 | 214 | 34 | 204 | 4.28e-50 | 168 |
| Msa0002140 | AT2G21250.2 | 35.808 | 229 | 131 | 6 | 20 | 238 | 11 | 233 | 1.98e-43 | 149 |
| Msa0002140 | AT2G21260.2 | 33.333 | 219 | 134 | 4 | 89 | 297 | 8 | 224 | 1.18e-40 | 142 |
| Msa0002140 | AT1G06690.1 | 29.221 | 308 | 161 | 11 | 38 | 309 | 87 | 373 | 1.13e-23 | 100 |
| Msa0002140 | AT5G53580.1 | 24.567 | 289 | 157 | 12 | 45 | 293 | 80 | 347 | 6.91e-13 | 68.9 |
Find 108 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTGAAATTAGAATATT+TGG | 0.170879 | 1_1:-3990472 | Msa0002140:CDS |
| GCTCTTGAACTTGGTCTAAT+TGG | 0.184953 | 1_1:-3992041 | Msa0002140:CDS |
| GTTTATGTGGAAATACAAAA+TGG | 0.215056 | 1_1:-3989072 | Msa0002140:three_prime_UTR |
| GGTCCAAATATTCTAATTTC+AGG | 0.242698 | 1_1:+3990469 | None:intergenic |
| TCAGTGTGAAGCCGGGAAAT+TGG | 0.256916 | 1_1:-3990425 | Msa0002140:CDS |
| CTACTATGCAAAGTATGTTT+AGG | 0.279304 | 1_1:-3989136 | Msa0002140:three_prime_UTR |
| TTGTGTTCATTCCTAACCTT+TGG | 0.306436 | 1_1:-3989450 | Msa0002140:CDS |
| GGAAACTTAAGCCCAATATT+AGG | 0.313169 | 1_1:-3989422 | Msa0002140:exon |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1_1:-3992098 | Msa0002140:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.335714 | 1_1:-3990342 | Msa0002140:CDS |
| TACTATGCAAAGTATGTTTA+GGG | 0.354106 | 1_1:-3989135 | Msa0002140:three_prime_UTR |
| TAGTGGACTGAACCTAATAT+TGG | 0.355352 | 1_1:+3989410 | None:intergenic |
| ACTACCCCAACTGGCCCCTT+TGG | 0.355628 | 1_1:+3989937 | None:intergenic |
| CTTTATCACCTCCAAACTTT+GGG | 0.360927 | 1_1:-3992003 | Msa0002140:CDS |
| GCCGGTTGGAAACTTCAAAA+TGG | 0.365856 | 1_1:+3988886 | None:intergenic |
| ATAACCGCTTTCTCTCCTTT+AGG | 0.371890 | 1_1:-3989962 | Msa0002140:CDS |
| ATTGTCGGTAACCCAAAGTT+TGG | 0.375226 | 1_1:+3991992 | None:intergenic |
| CAGTGTGAAGCCGGGAAATT+GGG | 0.376439 | 1_1:-3990424 | Msa0002140:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1_1:+3990016 | None:intergenic |
| TAGTGGAACAAGGGAATGTT+TGG | 0.380154 | 1_1:-3988859 | Msa0002140:three_prime_UTR |
| TGTGTTCATTCCTAACCTTT+GGG | 0.382649 | 1_1:-3989449 | Msa0002140:CDS |
| AGGAGCCAAAGGGGCCAGTT+GGG | 0.383611 | 1_1:-3989942 | Msa0002140:CDS |
| GTAATTGAAGCTATCAAATC+AGG | 0.391570 | 1_1:-3992131 | Msa0002140:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1_1:-3992004 | Msa0002140:CDS |
| GTTTCCCCATCCCAAAGGTT+AGG | 0.400915 | 1_1:+3989439 | None:intergenic |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1_1:-3990259 | Msa0002140:CDS |
| CACTGGCATGTTGCATTGGT+TGG | 0.406407 | 1_1:+3992211 | None:intergenic |
| TTTATGTGGAAATACAAAAT+GGG | 0.409330 | 1_1:-3989071 | Msa0002140:three_prime_UTR |
| TACGGCAATTCCCAATTTCC+CGG | 0.409708 | 1_1:+3990414 | None:intergenic |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1_1:-3992080 | Msa0002140:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1_1:-3989540 | Msa0002140:CDS |
| TTAGGCCTTGCAAAATCTAT+AGG | 0.418202 | 1_1:-3990324 | Msa0002140:CDS |
| TGGACCTTTATTTGATCCAC+TGG | 0.428214 | 1_1:-3990452 | Msa0002140:CDS |
| TAGCACCTTGAAGCCGGATT+GGG | 0.428576 | 1_1:+3989176 | None:intergenic |
| GTTTCCAACCGGCATATTAG+TGG | 0.430010 | 1_1:-3988876 | Msa0002140:three_prime_UTR |
| TTCATTCCTAACCTTTGGGA+TGG | 0.431912 | 1_1:-3989445 | Msa0002140:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1_1:+3989928 | None:intergenic |
| TTTCCCGGCTTCACACTGAT+TGG | 0.447551 | 1_1:+3990429 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1_1:-3989596 | Msa0002140:CDS |
| ATGTCACTCACTTGTTTATG+TGG | 0.449775 | 1_1:-3989085 | Msa0002140:three_prime_UTR |
| TTCTCTCCTTTAGGAGCCAA+AGG | 0.450688 | 1_1:-3989953 | Msa0002140:CDS |
| AGTGGACTGAACCTAATATT+GGG | 0.451967 | 1_1:+3989411 | None:intergenic |
| GTCCAAATATTCTAATTTCA+GGG | 0.456988 | 1_1:+3990470 | None:intergenic |
| GTTATTAATTCTTCAGCATA+CGG | 0.462926 | 1_1:+3990396 | None:intergenic |
| CTGGCCAATCAGTGTGAAGC+CGG | 0.465201 | 1_1:-3990433 | Msa0002140:CDS |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1_1:-3989924 | Msa0002140:CDS |
| CCCTTGTTCCACTAATATGC+CGG | 0.471076 | 1_1:+3988868 | None:intergenic |
| CATTCCTAACCTTTGGGATG+GGG | 0.471590 | 1_1:-3989443 | Msa0002140:CDS |
| AATTTCCCAATCCGGCTTCA+AGG | 0.474054 | 1_1:-3989181 | Msa0002140:three_prime_UTR |
| AACATGCCAGTGATAGCATT+TGG | 0.478930 | 1_1:-3992200 | Msa0002140:CDS |
| TCTCTCCTTTAGGAGCCAAA+GGG | 0.478990 | 1_1:-3989952 | Msa0002140:CDS |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1_1:-3989477 | Msa0002140:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1_1:+3991951 | None:intergenic |
| AGGTTAGGAATGAACACAAC+TGG | 0.482133 | 1_1:+3989454 | None:intergenic |
| GGAGAGAATGAAGCAAAACT+TGG | 0.486339 | 1_1:-3989554 | Msa0002140:CDS |
| TAGGAGCCAAAGGGGCCAGT+TGG | 0.490078 | 1_1:-3989943 | Msa0002140:CDS |
| ATAAAGACAATTTCCCAATC+CGG | 0.491280 | 1_1:-3989189 | Msa0002140:three_prime_UTR |
| ATAGAAGAAGCTCTTGAACT+TGG | 0.496996 | 1_1:-3992050 | Msa0002140:CDS |
| TCACGCTAAAGTGATGATAG+TGG | 0.498222 | 1_1:+3989393 | None:intergenic |
| TGTTATAGGTATGTCTTAGA+TGG | 0.498955 | 1_1:-3989621 | Msa0002140:intron |
| ATATAAAAGCAAGAAAATGA+TGG | 0.501416 | 1_1:+3992338 | None:intergenic |
| TCATTCCTAACCTTTGGGAT+GGG | 0.502283 | 1_1:-3989444 | Msa0002140:CDS |
| TTAGCACCTTGAAGCCGGAT+TGG | 0.503856 | 1_1:+3989175 | None:intergenic |
| AAGATTTCAGCACAACTTGA+GGG | 0.504815 | 1_1:+3992237 | None:intergenic |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1_1:-3990030 | Msa0002140:CDS |
| CTATCACTGGCATGTTGCAT+TGG | 0.517036 | 1_1:+3992207 | None:intergenic |
| TTGGCCAGTGGATCAAATAA+AGG | 0.518534 | 1_1:+3990448 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1_1:+3990246 | None:intergenic |
| GTCGGTAACCCAAAGTTTGG+AGG | 0.523032 | 1_1:+3991995 | None:intergenic |
| CTGGCCCCTTTGGCTCCTAA+AGG | 0.523489 | 1_1:+3989947 | None:intergenic |
| AAAAGAATACTGTGAAGCAA+AGG | 0.527118 | 1_1:-3989993 | Msa0002140:CDS |
| TATTCGTGTTGGTGGCAACT+TGG | 0.528550 | 1_1:-3992394 | None:intergenic |
| GAAGATTTCAGCACAACTTG+AGG | 0.530579 | 1_1:+3992236 | None:intergenic |
| AACAAGATGAGGAAAATTGT+CGG | 0.542068 | 1_1:+3991977 | None:intergenic |
| GGAGCCAAAGGGGCCAGTTG+GGG | 0.542781 | 1_1:-3989941 | Msa0002140:CDS |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1_1:-3989478 | Msa0002140:CDS |
| TGTTCCACTAATATGCCGGT+TGG | 0.550571 | 1_1:+3988872 | None:intergenic |
| TATAAAAGCAAGAAAATGAT+GGG | 0.550689 | 1_1:+3992339 | None:intergenic |
| AAAGAATACTGTGAAGCAAA+GGG | 0.552823 | 1_1:-3989992 | Msa0002140:CDS |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1_1:-3989607 | Msa0002140:CDS |
| TGGCCAATCAGTGTGAAGCC+GGG | 0.555485 | 1_1:-3990432 | Msa0002140:CDS |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1_1:-3990378 | Msa0002140:CDS |
| ACAGCAAAATGGATACATGA+TGG | 0.562176 | 1_1:+3989012 | None:intergenic |
| TTATGTGGAAATACAAAATG+GGG | 0.563544 | 1_1:-3989070 | Msa0002140:three_prime_UTR |
| GCGGTACCAAATGCTATCAC+TGG | 0.564066 | 1_1:+3992194 | None:intergenic |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1_1:+3990374 | None:intergenic |
| GAAAGGAGTGTGGACAGCAA+TGG | 0.582486 | 1_1:-3990361 | Msa0002140:CDS |
| ATCGTTGTTTGTTACAGCTG+CGG | 0.583633 | 1_1:+3992175 | None:intergenic |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1_1:+3990243 | None:intergenic |
| CTTAAGTTTCCCCATCCCAA+AGG | 0.597848 | 1_1:+3989434 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1_1:-3989887 | Msa0002140:CDS |
| CTATGCAAAGTATGTTTAGG+GGG | 0.610221 | 1_1:-3989133 | Msa0002140:three_prime_UTR |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1_1:-3992087 | Msa0002140:CDS |
| GGCTCCTAAAGGAGAGAAAG+CGG | 0.617316 | 1_1:+3989958 | None:intergenic |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1_1:+3991966 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1_1:-3989605 | Msa0002140:CDS |
| AGCAAGAAAATGATGGGACA+CGG | 0.630805 | 1_1:+3992345 | None:intergenic |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1_1:-3989606 | Msa0002140:CDS |
| ACCGGCATATTAGTGGAACA+AGG | 0.644737 | 1_1:-3988869 | Msa0002140:three_prime_UTR |
| CTCTCCTTTAGGAGCCAAAG+GGG | 0.646505 | 1_1:-3989951 | Msa0002140:CDS |
| CCGGCATATTAGTGGAACAA+GGG | 0.662226 | 1_1:-3988868 | Msa0002140:three_prime_UTR |
| GCTTCACACTGATTGGCCAG+TGG | 0.662823 | 1_1:+3990436 | None:intergenic |
| GGCTGTGAAGAGCTACAACA+AGG | 0.663022 | 1_1:-3989575 | Msa0002140:CDS |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1_1:-3990371 | Msa0002140:CDS |
| GATGATGGTATCACACTACT+CGG | 0.673538 | 1_1:+3992286 | None:intergenic |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1_1:-3989894 | Msa0002140:CDS |
| ACTATGCAAAGTATGTTTAG+GGG | 0.690200 | 1_1:-3989134 | Msa0002140:three_prime_UTR |
| GCAGCTGTAACAAACAACGA+TGG | 0.716105 | 1_1:-3992173 | Msa0002140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTGTTATAAATCAT+AGG | - | chr1_1:3990402-3990421 | Msa0002140:CDS | 10.0% |
| !!! | AACTAAAAATACAATTTTTT+TGG | - | chr1_1:3991917-3991936 | Msa0002140:intron | 10.0% |
| !! | TAATAATTCTAAGTACATAA+AGG | + | chr1_1:3989328-3989347 | None:intergenic | 15.0% |
| !!! | ATATATATAATGTTTTGTCT+TGG | - | chr1_1:3989351-3989370 | Msa0002140:intron | 15.0% |
| !! | GAAATTATAATTAGTTAAAG+TGG | - | chr1_1:3989628-3989647 | Msa0002140:intron | 15.0% |
| !! | TTACCATATAATATAATACT+GGG | - | chr1_1:3989967-3989986 | Msa0002140:CDS | 15.0% |
| !!! | TAAGAAAGAAAAGTATTATA+GGG | + | chr1_1:3990265-3990284 | None:intergenic | 15.0% |
| !!! | ATAAGAAAGAAAAGTATTAT+AGG | + | chr1_1:3990266-3990285 | None:intergenic | 15.0% |
| !! | TATAAAAGCAAGAAAATGAT+GGG | + | chr1_1:3988901-3988920 | None:intergenic | 20.0% |
| !! | ATATAAAAGCAAGAAAATGA+TGG | + | chr1_1:3988902-3988921 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGCATCATAAAGT+TGG | - | chr1_1:3989424-3989443 | Msa0002140:exon | 20.0% |
| !!! | GTATGATTTTTGAATTAGAA+TGG | + | chr1_1:3989465-3989484 | None:intergenic | 20.0% |
| !! | TTAAATTAAAATTGAGGAAC+AGG | - | chr1_1:3989606-3989625 | Msa0002140:CDS | 20.0% |
| !! | TCATAGAAATGGTTATAAAA+TGG | + | chr1_1:3989663-3989682 | None:intergenic | 20.0% |
| !!! | ATATCCAAAACTTTTAAGAT+AGG | - | chr1_1:3989798-3989817 | Msa0002140:intron | 20.0% |
| !! | CAATTTACAAATAATACTTG+TGG | - | chr1_1:3989928-3989947 | Msa0002140:CDS | 20.0% |
| !! | GTTACCATATAATATAATAC+TGG | - | chr1_1:3989966-3989985 | Msa0002140:CDS | 20.0% |
| !! | TACCATATAATATAATACTG+GGG | - | chr1_1:3989968-3989987 | Msa0002140:CDS | 20.0% |
| !!! | AAGAAAGAAAAGTATTATAG+GGG | + | chr1_1:3990264-3990283 | None:intergenic | 20.0% |
| !! | TAAGTTTAATAACTTGATAG+AGG | - | chr1_1:3990459-3990478 | Msa0002140:CDS | 20.0% |
| !! | AAGTTTAATAACTTGATAGA+GGG | - | chr1_1:3990460-3990479 | Msa0002140:CDS | 20.0% |
| !!! | GATATATAAAAGTTTGTTAG+AGG | + | chr1_1:3990601-3990620 | None:intergenic | 20.0% |
| !! | TAAATAGTATCAAAACAACA+TGG | - | chr1_1:3990709-3990728 | Msa0002140:intron | 20.0% |
| !!! | TTTATTCAAGTTTATTAGCT+AGG | - | chr1_1:3991545-3991564 | Msa0002140:intron | 20.0% |
| !!! | TTATTCAAGTTTATTAGCTA+GGG | - | chr1_1:3991546-3991565 | Msa0002140:intron | 20.0% |
| !! | ATGATTATTCAACTATTTGA+TGG | - | chr1_1:3991572-3991591 | Msa0002140:intron | 20.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | - | chr1_1:3991697-3991716 | Msa0002140:intron | 20.0% |
| !!! | AACAATCTTTGAGAAAATTA+TGG | - | chr1_1:3991944-3991963 | Msa0002140:intron | 20.0% |
| !! | TTTATGTGGAAATACAAAAT+GGG | - | chr1_1:3992166-3992185 | Msa0002140:CDS | 20.0% |
| !! | AAAAAAATCAAACAGCAAAA+TGG | + | chr1_1:3992239-3992258 | None:intergenic | 20.0% |
| !!! | ATTTTGCTGTTTGATTTTTT+TGG | - | chr1_1:3992238-3992257 | Msa0002140:CDS | 20.0% |
| !! | AAGGTAATAATTTTGCTTAC+TGG | + | chr1_1:3989309-3989328 | None:intergenic | 25.0% |
| ! | GTTTAACCTTATAACTTCAA+AGG | + | chr1_1:3989700-3989719 | None:intergenic | 25.0% |
| !! | GTATCCTATCTTAAAAGTTT+TGG | + | chr1_1:3989805-3989824 | None:intergenic | 25.0% |
| ! | TTCCCCAGTATTATATTATA+TGG | + | chr1_1:3989973-3989992 | None:intergenic | 25.0% |
| ! | AGTTTAATAACTTGATAGAG+GGG | - | chr1_1:3990461-3990480 | Msa0002140:CDS | 25.0% |
| !!! | TTAGAGGTTTTTTCTTTACT+CGG | + | chr1_1:3990585-3990604 | None:intergenic | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+GGG | + | chr1_1:3990770-3990789 | None:intergenic | 25.0% |
| ! | GTTATTAATTCTTCAGCATA+CGG | + | chr1_1:3990844-3990863 | None:intergenic | 25.0% |
| ! | AATTACAAAGTGATACTACA+TGG | + | chr1_1:3991131-3991150 | None:intergenic | 25.0% |
| ! | ATTAATATCCGATTAGAATG+TGG | + | chr1_1:3991175-3991194 | None:intergenic | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | - | chr1_1:3991187-3991206 | Msa0002140:intron | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | + | chr1_1:3991396-3991415 | None:intergenic | 25.0% |
| ! | GGAGTTAATATAATTCTTTG+TGG | - | chr1_1:3991593-3991612 | Msa0002140:intron | 25.0% |
| !!! | ATAATTCTTTGTGGTGTTAT+AGG | - | chr1_1:3991602-3991621 | Msa0002140:intron | 25.0% |
| ! | TTGAGAAAATTATGGATTCA+AGG | - | chr1_1:3991952-3991971 | Msa0002140:CDS | 25.0% |
| ! | TACTATGCAAAGTATGTTTA+GGG | - | chr1_1:3992102-3992121 | Msa0002140:CDS | 25.0% |
| ! | GTTTATGTGGAAATACAAAA+TGG | - | chr1_1:3992165-3992184 | Msa0002140:CDS | 25.0% |
| ! | TTATGTGGAAATACAAAATG+GGG | - | chr1_1:3992167-3992186 | Msa0002140:CDS | 25.0% |
| !!! | TTGTAGTTCGATTTTTTGTT+TGG | + | chr1_1:3992198-3992217 | None:intergenic | 25.0% |
| GTAATTGAAGCTATCAAATC+AGG | - | chr1_1:3989106-3989125 | Msa0002140:three_prime_UTR | 30.0% | |
| TTTGACACTGCATCAATATA+TGG | - | chr1_1:3989139-3989158 | Msa0002140:three_prime_UTR | 30.0% | |
| AACAAGATGAGGAAAATTGT+CGG | + | chr1_1:3989263-3989282 | None:intergenic | 30.0% | |
| AACCTTATAACTTCAAAGGA+CGG | + | chr1_1:3989696-3989715 | None:intergenic | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr1_1:3990041-3990060 | None:intergenic | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr1_1:3990042-3990061 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr1_1:3990162-3990181 | Msa0002140:intron | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | - | chr1_1:3990190-3990209 | Msa0002140:intron | 30.0% | |
| TTGCAATTTATCTGCATTCA+GGG | - | chr1_1:3990191-3990210 | Msa0002140:intron | 30.0% | |
| TAAATCATAGGATCAAAGAG+AGG | - | chr1_1:3990414-3990433 | Msa0002140:CDS | 30.0% | |
| !! | TAGTTTGTTGATTCTCTAGT+AGG | + | chr1_1:3990540-3990559 | None:intergenic | 30.0% |
| !! | TGATCACTGGATTTTGAAAA+GGG | + | chr1_1:3990636-3990655 | None:intergenic | 30.0% |
| !! | ATGATCACTGGATTTTGAAA+AGG | + | chr1_1:3990637-3990656 | None:intergenic | 30.0% |
| GACCCTGAAATTAGAATATT+TGG | - | chr1_1:3990765-3990784 | Msa0002140:intron | 30.0% | |
| GGTCCAAATATTCTAATTTC+AGG | + | chr1_1:3990771-3990790 | None:intergenic | 30.0% | |
| ATAACCACATTTGATCTGAA+AGG | - | chr1_1:3990859-3990878 | Msa0002140:intron | 30.0% | |
| AAAAGAATACTGTGAAGCAA+AGG | - | chr1_1:3991244-3991263 | Msa0002140:intron | 30.0% | |
| AAAGAATACTGTGAAGCAAA+GGG | - | chr1_1:3991245-3991264 | Msa0002140:intron | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | + | chr1_1:3991447-3991466 | None:intergenic | 30.0% | |
| TGTTATAGGTATGTCTTAGA+TGG | - | chr1_1:3991616-3991635 | Msa0002140:intron | 30.0% | |
| AAACATACGAAAAACACGTA+AGG | - | chr1_1:3991998-3992017 | Msa0002140:CDS | 30.0% | |
| ATAAAGACAATTTCCCAATC+CGG | - | chr1_1:3992048-3992067 | Msa0002140:CDS | 30.0% | |
| CTACTATGCAAAGTATGTTT+AGG | - | chr1_1:3992101-3992120 | Msa0002140:CDS | 30.0% | |
| ACTATGCAAAGTATGTTTAG+GGG | - | chr1_1:3992103-3992122 | Msa0002140:CDS | 30.0% | |
| TATGTTTAGGGGGATAAATT+GGG | - | chr1_1:3992114-3992133 | Msa0002140:CDS | 30.0% | |
| !!! | TGTTTGATTTTTTTGGCTTC+TGG | - | chr1_1:3992245-3992264 | Msa0002140:CDS | 30.0% |
| ! | ACACATGATGATGATGATGA+TGG | + | chr1_1:3988969-3988988 | None:intergenic | 35.0% |
| AAGATTTCAGCACAACTTGA+GGG | + | chr1_1:3989003-3989022 | None:intergenic | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | - | chr1_1:3989150-3989169 | Msa0002140:three_prime_UTR | 35.0% | |
| ATAGAAGAAGCTCTTGAACT+TGG | - | chr1_1:3989187-3989206 | Msa0002140:three_prime_UTR | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | - | chr1_1:3989233-3989252 | Msa0002140:intron | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | - | chr1_1:3989234-3989253 | Msa0002140:intron | 35.0% | |
| GAGTTCAAAGCTCATAGAAA+TGG | + | chr1_1:3989674-3989693 | None:intergenic | 35.0% | |
| !! | ACAAAAGTATCTGGGTTCAT+AGG | + | chr1_1:3989746-3989765 | None:intergenic | 35.0% |
| ! | TATGAACCCAGATACTTTTG+TGG | - | chr1_1:3989745-3989764 | Msa0002140:intron | 35.0% |
| ! | ATGAACCCAGATACTTTTGT+GGG | - | chr1_1:3989746-3989765 | Msa0002140:intron | 35.0% |
| GGTACGAGTATGATATGATA+CGG | - | chr1_1:3989767-3989786 | Msa0002140:intron | 35.0% | |
| TAATCACTTTAGTCCCTGAA+TGG | - | chr1_1:3989994-3990013 | Msa0002140:CDS | 35.0% | |
| AATCACTTTAGTCCCTGAAT+GGG | - | chr1_1:3989995-3990014 | Msa0002140:CDS | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | - | chr1_1:3990098-3990117 | Msa0002140:intron | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr1_1:3990115-3990134 | Msa0002140:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr1_1:3990161-3990180 | Msa0002140:intron | 35.0% | |
| ATAAAAATCGTCCATGAGAG+AGG | + | chr1_1:3990358-3990377 | None:intergenic | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | - | chr1_1:3990895-3990914 | Msa0002140:intron | 35.0% | |
| ! | ATTTTGCAAGGCCTAATTTC+TGG | + | chr1_1:3990909-3990928 | None:intergenic | 35.0% |
| TTAGGCCTTGCAAAATCTAT+AGG | - | chr1_1:3990913-3990932 | Msa0002140:intron | 35.0% | |
| ! | TGACTCCTATAGATTTTGCA+AGG | + | chr1_1:3990921-3990940 | None:intergenic | 35.0% |
| !! | ATTTGCTATCATTCCTCCTT+CGG | - | chr1_1:3990978-3990997 | Msa0002140:intron | 35.0% |
| AGTGACATAGATGAGCTTAT+TGG | + | chr1_1:3991017-3991036 | None:intergenic | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | + | chr1_1:3991045-3991064 | None:intergenic | 35.0% | |
| !! | CTAGTCTTGTAGTTTAACGT+CGG | - | chr1_1:3991055-3991074 | Msa0002140:intron | 35.0% |
| !! | TAAAATAGTTTTACAGCGCG+CGG | - | chr1_1:3991080-3991099 | Msa0002140:intron | 35.0% |
| TTAATGCCACCAAATATAGG+TGG | - | chr1_1:3991190-3991209 | Msa0002140:intron | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | + | chr1_1:3991202-3991221 | None:intergenic | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | - | chr1_1:3991313-3991332 | Msa0002140:intron | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | - | chr1_1:3991343-3991362 | Msa0002140:intron | 35.0% | |
| ACATGGCAAAAATATTGCTC+AGG | - | chr1_1:3991367-3991386 | Msa0002140:intron | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | - | chr1_1:3991631-3991650 | Msa0002140:intron | 35.0% | |
| AAACAGATTCGTGTCAACAA+TGG | - | chr1_1:3991759-3991778 | Msa0002140:intron | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | - | chr1_1:3991760-3991779 | Msa0002140:intron | 35.0% | |
| TTGTGTTCATTCCTAACCTT+TGG | - | chr1_1:3991787-3991806 | Msa0002140:intron | 35.0% | |
| TGTGTTCATTCCTAACCTTT+GGG | - | chr1_1:3991788-3991807 | Msa0002140:intron | 35.0% | |
| GGAAACTTAAGCCCAATATT+AGG | - | chr1_1:3991815-3991834 | Msa0002140:intron | 35.0% | |
| !! | AGTGGACTGAACCTAATATT+GGG | + | chr1_1:3991829-3991848 | None:intergenic | 35.0% |
| !! | TAGTGGACTGAACCTAATAT+TGG | + | chr1_1:3991830-3991849 | None:intergenic | 35.0% |
| ATCATCACTTTAGCGTGAAT+AGG | - | chr1_1:3991849-3991868 | Msa0002140:intron | 35.0% | |
| ! | TTCTCTATGTGCTTTTCGTA+TGG | - | chr1_1:3991889-3991908 | Msa0002140:intron | 35.0% |
| TTATGGATTCAAGGAACTCA+TGG | - | chr1_1:3991961-3991980 | Msa0002140:CDS | 35.0% | |
| TATTCACGCGGAAAAAACTT+AGG | + | chr1_1:3992031-3992050 | None:intergenic | 35.0% | |
| GGAAATTGTCTTTATTCACG+CGG | + | chr1_1:3992043-3992062 | None:intergenic | 35.0% | |
| CTATGCAAAGTATGTTTAGG+GGG | - | chr1_1:3992104-3992123 | Msa0002140:CDS | 35.0% | |
| GTATGTTTAGGGGGATAAAT+TGG | - | chr1_1:3992113-3992132 | Msa0002140:CDS | 35.0% | |
| ATGTCACTCACTTGTTTATG+TGG | - | chr1_1:3992152-3992171 | Msa0002140:CDS | 35.0% | |
| ACAGCAAAATGGATACATGA+TGG | + | chr1_1:3992228-3992247 | None:intergenic | 35.0% | |
| !!! | ACCATTTTGAAGTTTCCAAC+CGG | - | chr1_1:3992350-3992369 | Msa0002140:five_prime_UTR | 35.0% |
| ! | AGCAAGAAAATGATGGGACA+CGG | + | chr1_1:3988895-3988914 | None:intergenic | 40.0% |
| ! | GATGATGGTATCACACTACT+CGG | + | chr1_1:3988954-3988973 | None:intergenic | 40.0% |
| GAAGATTTCAGCACAACTTG+AGG | + | chr1_1:3989004-3989023 | None:intergenic | 40.0% | |
| AACATGCCAGTGATAGCATT+TGG | - | chr1_1:3989037-3989056 | Msa0002140:three_prime_UTR | 40.0% | |
| ! | ATCGTTGTTTGTTACAGCTG+CGG | + | chr1_1:3989065-3989084 | None:intergenic | 40.0% |
| GCTCTTGAACTTGGTCTAAT+TGG | - | chr1_1:3989196-3989215 | Msa0002140:intron | 40.0% | |
| ATTGTCGGTAACCCAAAGTT+TGG | + | chr1_1:3989248-3989267 | None:intergenic | 40.0% | |
| !! | CTCCGTCCTTTGAAGTTATA+AGG | - | chr1_1:3989691-3989710 | Msa0002140:intron | 40.0% |
| !! | TCGTACCCACAAAAGTATCT+GGG | + | chr1_1:3989754-3989773 | None:intergenic | 40.0% |
| ATCACTTTAGTCCCTGAATG+GGG | - | chr1_1:3989996-3990015 | Msa0002140:CDS | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | - | chr1_1:3990097-3990116 | Msa0002140:intron | 40.0% | |
| ACTAACGGAAACTGCATTCA+GGG | - | chr1_1:3990130-3990149 | Msa0002140:intron | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr1_1:3990237-3990256 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr1_1:3990082-3990101 | None:intergenic | 40.0% |
| !! | CTCGGTTAGAGTTTGTTAGT+AGG | + | chr1_1:3990567-3990586 | None:intergenic | 40.0% |
| CAATCGTTGAAGATGATCAC+TGG | + | chr1_1:3990649-3990668 | None:intergenic | 40.0% | |
| TCAAAACAACATGGAGCACA+AGG | - | chr1_1:3990718-3990737 | Msa0002140:intron | 40.0% | |
| TGAAATTGATGCCATACTGC+AGG | - | chr1_1:3990743-3990762 | Msa0002140:intron | 40.0% | |
| ! | TGGACCTTTATTTGATCCAC+TGG | - | chr1_1:3990785-3990804 | Msa0002140:intron | 40.0% |
| TTGGCCAGTGGATCAAATAA+AGG | + | chr1_1:3990792-3990811 | None:intergenic | 40.0% | |
| CACTCCTTTCAGATCAAATG+TGG | + | chr1_1:3990866-3990885 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | - | chr1_1:3990866-3990885 | Msa0002140:intron | 40.0% | |
| GCAACATGCCACATTCTAAT+CGG | - | chr1_1:3991164-3991183 | Msa0002140:intron | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | + | chr1_1:3991199-3991218 | None:intergenic | 40.0% | |
| ATAACCGCTTTCTCTCCTTT+AGG | - | chr1_1:3991275-3991294 | Msa0002140:intron | 40.0% | |
| AACTTCATTACTACCCCAAC+TGG | + | chr1_1:3991312-3991331 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | - | chr1_1:3991350-3991369 | Msa0002140:intron | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | - | chr1_1:3991630-3991649 | Msa0002140:intron | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | - | chr1_1:3991632-3991651 | Msa0002140:intron | 40.0% | |
| GGAGAGAATGAAGCAAAACT+TGG | - | chr1_1:3991683-3991702 | Msa0002140:intron | 40.0% | |
| AGGTTAGGAATGAACACAAC+TGG | + | chr1_1:3991786-3991805 | None:intergenic | 40.0% | |
| ! | TTCATTCCTAACCTTTGGGA+TGG | - | chr1_1:3991792-3991811 | Msa0002140:intron | 40.0% |
| !! | TCATTCCTAACCTTTGGGAT+GGG | - | chr1_1:3991793-3991812 | Msa0002140:intron | 40.0% |
| TCACGCTAAAGTGATGATAG+TGG | + | chr1_1:3991847-3991866 | None:intergenic | 40.0% | |
| GCGTGAATAGGACAAAACTT+AGG | - | chr1_1:3991861-3991880 | Msa0002140:intron | 40.0% | |
| !! | AGATTTTAGCACCTTGAAGC+CGG | + | chr1_1:3992070-3992089 | None:intergenic | 40.0% |
| TAGTGGAACAAGGGAATGTT+TGG | - | chr1_1:3992378-3992397 | Msa0002140:five_prime_UTR | 40.0% | |
| CTATCACTGGCATGTTGCAT+TGG | + | chr1_1:3989033-3989052 | None:intergenic | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | - | chr1_1:3989064-3989083 | Msa0002140:three_prime_UTR | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | - | chr1_1:3989157-3989176 | Msa0002140:three_prime_UTR | 45.0% | |
| AGAGCAGGAAGAACAAGATG+AGG | + | chr1_1:3989274-3989293 | None:intergenic | 45.0% | |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | + | chr1_1:3989289-3989308 | None:intergenic | 45.0% |
| !! | CTCGTACCCACAAAAGTATC+TGG | + | chr1_1:3989755-3989774 | None:intergenic | 45.0% |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr1_1:3990054-3990073 | Msa0002140:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr1_1:3990066-3990085 | Msa0002140:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr1_1:3990070-3990089 | None:intergenic | 45.0% | |
| GACTAACGGAAACTGCATTC+AGG | - | chr1_1:3990129-3990148 | Msa0002140:intron | 45.0% | |
| ! | GTCACTTTAGTCCCTGAATG+GGG | + | chr1_1:3990236-3990255 | None:intergenic | 45.0% |
| CATGAGAGAGGAGACTCAAT+CGG | + | chr1_1:3990346-3990365 | None:intergenic | 45.0% | |
| AATTTCAGGGTCCTGCAGTA+TGG | + | chr1_1:3990757-3990776 | None:intergenic | 45.0% | |
| TACGGCAATTCCCAATTTCC+CGG | + | chr1_1:3990826-3990845 | None:intergenic | 45.0% | |
| CTTACTTGATTGACCGAAGG+AGG | + | chr1_1:3990994-3991013 | None:intergenic | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | + | chr1_1:3990997-3991016 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | - | chr1_1:3991207-3991226 | Msa0002140:intron | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | + | chr1_1:3991224-3991243 | None:intergenic | 45.0% | |
| ! | TTCTCTCCTTTAGGAGCCAA+AGG | - | chr1_1:3991284-3991303 | Msa0002140:intron | 45.0% |
| ! | TCTCTCCTTTAGGAGCCAAA+GGG | - | chr1_1:3991285-3991304 | Msa0002140:intron | 45.0% |
| !! | CATTCCTAACCTTTGGGATG+GGG | - | chr1_1:3991794-3991813 | Msa0002140:intron | 45.0% |
| CTTAAGTTTCCCCATCCCAA+AGG | + | chr1_1:3991806-3991825 | None:intergenic | 45.0% | |
| AATTTCCCAATCCGGCTTCA+AGG | - | chr1_1:3992056-3992075 | Msa0002140:CDS | 45.0% | |
| GCCGGTTGGAAACTTCAAAA+TGG | + | chr1_1:3992354-3992373 | None:intergenic | 45.0% | |
| GTTTCCAACCGGCATATTAG+TGG | - | chr1_1:3992361-3992380 | Msa0002140:five_prime_UTR | 45.0% | |
| TGTTCCACTAATATGCCGGT+TGG | + | chr1_1:3992368-3992387 | None:intergenic | 45.0% | |
| ACCGGCATATTAGTGGAACA+AGG | - | chr1_1:3992368-3992387 | Msa0002140:five_prime_UTR | 45.0% | |
| CCCTTGTTCCACTAATATGC+CGG | + | chr1_1:3992372-3992391 | None:intergenic | 45.0% | |
| CCGGCATATTAGTGGAACAA+GGG | - | chr1_1:3992369-3992388 | Msa0002140:five_prime_UTR | 45.0% | |
| !!! | TAAAAATAAAATCATATTTT+TGG | + | chr1_1:3989578-3989597 | None:intergenic | 5.0% |
| !!! | TTTATTTTAAATTAAAATTG+AGG | - | chr1_1:3989600-3989619 | Msa0002140:CDS | 5.0% |
| ! | CACTGGCATGTTGCATTGGT+TGG | + | chr1_1:3989029-3989048 | None:intergenic | 50.0% |
| GCGGTACCAAATGCTATCAC+TGG | + | chr1_1:3989046-3989065 | None:intergenic | 50.0% | |
| GTCGGTAACCCAAAGTTTGG+AGG | + | chr1_1:3989245-3989264 | None:intergenic | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr1_1:3990222-3990241 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr1_1:3990221-3990240 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr1_1:3990065-3990084 | Msa0002140:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr1_1:3990071-3990090 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | - | chr1_1:3990221-3990240 | Msa0002140:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | - | chr1_1:3990222-3990241 | Msa0002140:intron | 50.0% | |
| CGATTGAGTCTCCTCTCTCA+TGG | - | chr1_1:3990344-3990363 | Msa0002140:CDS | 50.0% | |
| TTTCCCGGCTTCACACTGAT+TGG | + | chr1_1:3990811-3990830 | None:intergenic | 50.0% | |
| TCAGTGTGAAGCCGGGAAAT+TGG | - | chr1_1:3990812-3990831 | Msa0002140:intron | 50.0% | |
| CAGTGTGAAGCCGGGAAATT+GGG | - | chr1_1:3990813-3990832 | Msa0002140:intron | 50.0% | |
| ! | GAAAGGAGTGTGGACAGCAA+TGG | - | chr1_1:3990876-3990895 | Msa0002140:intron | 50.0% |
| CGGCAGCAATTGAGTAGTCA+CGG | - | chr1_1:3991100-3991119 | Msa0002140:intron | 50.0% | |
| GGCTCCTAAAGGAGAGAAAG+CGG | + | chr1_1:3991282-3991301 | None:intergenic | 50.0% | |
| ! | CTCTCCTTTAGGAGCCAAAG+GGG | - | chr1_1:3991286-3991305 | Msa0002140:intron | 50.0% |
| GTATGAGCAAGGGGTGACTA+TGG | - | chr1_1:3991641-3991660 | Msa0002140:intron | 50.0% | |
| GGCTGTGAAGAGCTACAACA+AGG | - | chr1_1:3991662-3991681 | Msa0002140:intron | 50.0% | |
| GTTTCCCCATCCCAAAGGTT+AGG | + | chr1_1:3991801-3991820 | None:intergenic | 50.0% | |
| TAGCACCTTGAAGCCGGATT+GGG | + | chr1_1:3992064-3992083 | None:intergenic | 50.0% | |
| TTAGCACCTTGAAGCCGGAT+TGG | + | chr1_1:3992065-3992084 | None:intergenic | 50.0% | |
| ! | GCTTCACACTGATTGGCCAG+TGG | + | chr1_1:3990804-3990823 | None:intergenic | 55.0% |
| CTGGCCAATCAGTGTGAAGC+CGG | - | chr1_1:3990804-3990823 | Msa0002140:intron | 55.0% | |
| TGGCCAATCAGTGTGAAGCC+GGG | - | chr1_1:3990805-3990824 | Msa0002140:intron | 55.0% | |
| ! | CTGGCCCCTTTGGCTCCTAA+AGG | + | chr1_1:3991293-3991312 | None:intergenic | 60.0% |
| TAGGAGCCAAAGGGGCCAGT+TGG | - | chr1_1:3991294-3991313 | Msa0002140:intron | 60.0% | |
| AGGAGCCAAAGGGGCCAGTT+GGG | - | chr1_1:3991295-3991314 | Msa0002140:intron | 60.0% | |
| ACTACCCCAACTGGCCCCTT+TGG | + | chr1_1:3991303-3991322 | None:intergenic | 60.0% | |
| GGAGCCAAAGGGGCCAGTTG+GGG | - | chr1_1:3991296-3991315 | Msa0002140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3988856 | 3992403 | 3988856 | ID=Msa0002140;Name=Msa0002140 |
| chr1_1 | mRNA | 3988856 | 3992403 | 3988856 | ID=Msa0002140-mRNA-1;Parent=Msa0002140;Name=Msa0002140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=127|1|1|1|0.75|0.6|5|395|316 |
| chr1_1 | exon | 3988856 | 3989212 | 3988856 | ID=Msa0002140-mRNA-1:exon:1248;Parent=Msa0002140-mRNA-1 |
| chr1_1 | exon | 3989397 | 3989635 | 3989397 | ID=Msa0002140-mRNA-1:exon:1247;Parent=Msa0002140-mRNA-1 |
| chr1_1 | exon | 3989871 | 3990050 | 3989871 | ID=Msa0002140-mRNA-1:exon:1246;Parent=Msa0002140-mRNA-1 |
| chr1_1 | exon | 3990251 | 3990494 | 3990251 | ID=Msa0002140-mRNA-1:exon:1245;Parent=Msa0002140-mRNA-1 |
| chr1_1 | exon | 3991951 | 3992403 | 3991951 | ID=Msa0002140-mRNA-1:exon:1244;Parent=Msa0002140-mRNA-1 |
| chr1_1 | five_prime_UTR | 3992277 | 3992403 | 3992277 | ID=Msa0002140-mRNA-1:five_prime_utr;Parent=Msa0002140-mRNA-1 |
| chr1_1 | CDS | 3991951 | 3992276 | 3991951 | ID=Msa0002140-mRNA-1:cds;Parent=Msa0002140-mRNA-1 |
| chr1_1 | CDS | 3990251 | 3990494 | 3990251 | ID=Msa0002140-mRNA-1:cds;Parent=Msa0002140-mRNA-1 |
| chr1_1 | CDS | 3989871 | 3990050 | 3989871 | ID=Msa0002140-mRNA-1:cds;Parent=Msa0002140-mRNA-1 |
| chr1_1 | CDS | 3989435 | 3989635 | 3989435 | ID=Msa0002140-mRNA-1:cds;Parent=Msa0002140-mRNA-1 |
| chr1_1 | three_prime_UTR | 3989397 | 3989434 | 3989397 | ID=Msa0002140-mRNA-1:three_prime_utr;Parent=Msa0002140-mRNA-1 |
| chr1_1 | three_prime_UTR | 3988856 | 3989212 | 3988856 | ID=Msa0002140-mRNA-1:three_prime_utr;Parent=Msa0002140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
