Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021740 | sp|P26690|6DCS_SOYBN | 62.540 | 315 | 114 | 4 | 2 | 315 | 3 | 314 | 6.13e-139 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002140 | Msa0021740 | 0.909230 | 7.163465e-82 | -8.615850e-47 |
| Msa0006700 | Msa0021740 | 0.818636 | 1.767929e-52 | -8.615850e-47 |
| Msa0020630 | Msa0021740 | 0.816177 | 6.325870e-52 | -8.615850e-47 |
| Msa0021740 | Msa0079770 | 0.801863 | 7.367575e-49 | -8.615850e-47 |
| Msa0021740 | Msa0109490 | 0.811815 | 5.796384e-51 | -8.615850e-47 |
| Msa0021740 | Msa0127440 | 0.804846 | 1.775254e-49 | -8.615850e-47 |
| Msa0021740 | Msa0154240 | 0.806690 | 7.278668e-50 | -8.615850e-47 |
| Msa0021740 | Msa0159750 | 0.810310 | 1.228124e-50 | -8.615850e-47 |
| Msa0021740 | Msa0160520 | 0.893635 | 5.230759e-75 | -8.615850e-47 |
| Msa0021740 | Msa0185640 | -0.807501 | 4.900461e-50 | -8.615850e-47 |
| Msa0021740 | Msa0278670 | 0.800565 | 1.357986e-48 | -8.615850e-47 |
| Msa0021740 | Msa0363460 | 0.817202 | 3.727332e-52 | -8.615850e-47 |
| Msa0021740 | Msa0377280 | 0.805901 | 1.067081e-49 | -8.615850e-47 |
| Msa0021740 | Msa0404690 | 0.801371 | 9.293773e-49 | -8.615850e-47 |
| Msa0021740 | Msa0455230 | 0.817941 | 2.538997e-52 | -8.615850e-47 |
| Msa0021740 | Msa0540070 | 0.807071 | 6.046751e-50 | -8.615850e-47 |
| Msa0021740 | Msa0600820 | 0.828401 | 9.174899e-55 | -8.615850e-47 |
| Msa0021740 | Msa0675010 | 0.802151 | 6.428944e-49 | -8.615850e-47 |
| Msa0021740 | Msa0691080 | 0.803517 | 3.356983e-49 | -8.615850e-47 |
| Msa0021740 | Msa0699520 | 0.813060 | 3.098314e-51 | -8.615850e-47 |
| Msa0021740 | Msa0752580 | 0.814095 | 1.833929e-51 | -8.615850e-47 |
| Msa0021740 | Msa0754500 | 0.810263 | 1.257279e-50 | -8.615850e-47 |
| Msa0021740 | Msa0760890 | 0.809162 | 2.168667e-50 | -8.615850e-47 |
| Msa0021740 | Msa0775580 | 0.818648 | 1.756360e-52 | -8.615850e-47 |
| Msa0021740 | Msa0828570 | 0.820397 | 7.008012e-53 | -8.615850e-47 |
| Msa0021740 | Msa0909710 | 0.800338 | 1.510586e-48 | -8.615850e-47 |
| Msa0021740 | Msa0964680 | 0.809096 | 2.239915e-50 | -8.615850e-47 |
| Msa0021740 | Msa0970050 | 0.810027 | 1.413822e-50 | -8.615850e-47 |
| Msa0021740 | Msa0984000 | 0.801182 | 1.015980e-48 | -8.615850e-47 |
| Msa0021740 | Msa1004210 | 0.806158 | 9.421868e-50 | -8.615850e-47 |
| Msa0021740 | Msa1036390 | 0.813075 | 3.074626e-51 | -8.615850e-47 |
| Msa0021740 | Msa1046610 | 0.804085 | 2.558696e-49 | -8.615850e-47 |
| Msa0021740 | Msa1054410 | 0.815343 | 9.705522e-52 | -8.615850e-47 |
| Msa0021740 | Msa1076680 | 0.817600 | 3.032446e-52 | -8.615850e-47 |
| Msa0021740 | Msa1095480 | 0.817157 | 3.813948e-52 | -8.615850e-47 |
| Msa0021740 | Msa1182830 | 0.820491 | 6.668913e-53 | -8.615850e-47 |
| Msa0021740 | Msa1186570 | 0.821218 | 4.537867e-53 | -8.615850e-47 |
| Msa0021740 | Msa1205010 | -0.803613 | 3.206988e-49 | -8.615850e-47 |
| Msa0021740 | Msa1225820 | 0.831221 | 1.887497e-55 | -8.615850e-47 |
| Msa0021740 | Msa1241820 | 0.805798 | 1.121764e-49 | -8.615850e-47 |
| Msa0021740 | Msa1256540 | -0.800564 | 1.358387e-48 | -8.615850e-47 |
| Msa0021740 | Msa1296960 | -0.803085 | 4.124841e-49 | -8.615850e-47 |
| Msa0021740 | Msa1317710 | 0.800027 | 1.747594e-48 | -8.615850e-47 |
| Msa0021740 | Msa1336480 | 0.810882 | 9.239359e-51 | -8.615850e-47 |
| Msa0021740 | Msa1447440 | 0.823342 | 1.458751e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021740 | MtrunA17_Chr1g0173621 | 98.101 | 316 | 6 | 0 | 1 | 316 | 1 | 316 | 0.0 | 639 |
| Msa0021740 | MtrunA17_Chr3g0121001 | 63.666 | 311 | 110 | 3 | 6 | 315 | 7 | 315 | 8.86e-143 | 405 |
| Msa0021740 | MtrunA17_Chr5g0447951 | 63.279 | 305 | 109 | 3 | 1 | 305 | 1 | 302 | 2.63e-129 | 371 |
| Msa0021740 | MtrunA17_Chr5g0447961 | 63.279 | 305 | 109 | 3 | 1 | 305 | 1 | 302 | 2.63e-129 | 371 |
| Msa0021740 | MtrunA17_Chr5g0447941 | 63.279 | 305 | 109 | 3 | 1 | 305 | 1 | 302 | 2.75e-129 | 371 |
| Msa0021740 | MtrunA17_Chr6g0479981 | 51.713 | 321 | 143 | 3 | 1 | 313 | 1 | 317 | 3.22e-111 | 325 |
| Msa0021740 | MtrunA17_Chr6g0480011 | 50.154 | 325 | 148 | 4 | 1 | 315 | 1 | 321 | 3.62e-108 | 317 |
| Msa0021740 | MtrunA17_Chr6g0480021 | 49.536 | 323 | 134 | 3 | 1 | 315 | 1 | 302 | 2.48e-105 | 310 |
| Msa0021740 | MtrunA17_Chr4g0018921 | 43.137 | 306 | 159 | 6 | 20 | 315 | 14 | 314 | 6.53e-85 | 258 |
| Msa0021740 | MtrunA17_Chr8g0368921 | 39.482 | 309 | 172 | 5 | 18 | 315 | 14 | 318 | 7.62e-75 | 232 |
| Msa0021740 | MtrunA17_Chr7g0239701 | 42.960 | 277 | 141 | 5 | 50 | 315 | 47 | 317 | 2.14e-71 | 223 |
| Msa0021740 | MtrunA17_Chr8g0368931 | 38.170 | 317 | 181 | 4 | 8 | 315 | 4 | 314 | 5.84e-71 | 222 |
| Msa0021740 | MtrunA17_Chr4g0009531 | 41.368 | 307 | 163 | 7 | 18 | 315 | 14 | 312 | 5.68e-66 | 209 |
| Msa0021740 | MtrunA17_Chr4g0036261 | 53.804 | 184 | 77 | 1 | 141 | 316 | 1 | 184 | 9.47e-65 | 202 |
| Msa0021740 | MtrunA17_Chr7g0243551 | 40.433 | 277 | 156 | 4 | 19 | 295 | 22 | 289 | 2.02e-60 | 195 |
| Msa0021740 | MtrunA17_Chr4g0036301 | 54.386 | 171 | 70 | 1 | 153 | 315 | 1 | 171 | 9.51e-60 | 189 |
| Msa0021740 | MtrunA17_Chr4g0009581 | 41.445 | 263 | 140 | 4 | 41 | 303 | 35 | 283 | 1.01e-58 | 191 |
| Msa0021740 | MtrunA17_Chr4g0036321 | 51.744 | 172 | 75 | 1 | 153 | 316 | 1 | 172 | 5.54e-56 | 179 |
| Msa0021740 | MtrunA17_Chr4g0036051 | 37.248 | 298 | 171 | 7 | 20 | 307 | 11 | 302 | 1.50e-55 | 182 |
| Msa0021740 | MtrunA17_Chr4g0009621 | 39.834 | 241 | 123 | 4 | 84 | 315 | 1 | 228 | 3.31e-44 | 150 |
| Msa0021740 | MtrunA17_Chr4g0036291 | 51.376 | 109 | 50 | 1 | 1 | 109 | 1 | 106 | 1.64e-32 | 116 |
| Msa0021740 | MtrunA17_Chr6g0479811 | 52.336 | 107 | 51 | 0 | 193 | 299 | 1 | 107 | 1.75e-32 | 116 |
| Msa0021740 | MtrunA17_Chr4g0036311 | 48.624 | 109 | 53 | 1 | 1 | 109 | 1 | 106 | 5.70e-31 | 112 |
| Msa0021740 | MtrunA17_Chr4g0036251 | 50.459 | 109 | 45 | 2 | 1 | 109 | 1 | 100 | 2.09e-29 | 108 |
| Msa0021740 | MtrunA17_Chr6g0479791 | 48.837 | 86 | 34 | 2 | 240 | 315 | 18 | 103 | 2.29e-19 | 81.6 |
| Msa0021740 | MtrunA17_Chr3g0095421 | 25.249 | 301 | 168 | 10 | 45 | 309 | 83 | 362 | 1.50e-15 | 76.6 |
| Msa0021740 | MtrunA17_Chr3g0127491 | 23.793 | 290 | 166 | 9 | 45 | 297 | 79 | 350 | 1.39e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021740 | AT1G59960.1 | 51.385 | 325 | 148 | 3 | 1 | 315 | 1 | 325 | 1.05e-122 | 355 |
| Msa0021740 | AT1G59950.1 | 55.082 | 305 | 128 | 2 | 20 | 315 | 15 | 319 | 7.63e-116 | 337 |
| Msa0021740 | AT5G62420.1 | 44.444 | 306 | 156 | 5 | 20 | 315 | 14 | 315 | 2.12e-84 | 257 |
| Msa0021740 | AT2G37770.2 | 43.310 | 284 | 149 | 3 | 41 | 315 | 34 | 314 | 1.17e-77 | 240 |
| Msa0021740 | AT2G37790.1 | 40.850 | 306 | 167 | 4 | 18 | 315 | 14 | 313 | 3.14e-77 | 239 |
| Msa0021740 | AT2G37760.2 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 3.13e-74 | 231 |
| Msa0021740 | AT2G37760.1 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 3.13e-74 | 231 |
| Msa0021740 | AT2G37760.4 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 3.40e-74 | 230 |
| Msa0021740 | AT2G37760.3 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 3.40e-74 | 230 |
| Msa0021740 | AT2G37760.5 | 42.199 | 282 | 153 | 3 | 18 | 299 | 14 | 285 | 3.47e-74 | 230 |
| Msa0021740 | AT3G53880.1 | 41.007 | 278 | 152 | 3 | 47 | 315 | 40 | 314 | 1.91e-72 | 226 |
| Msa0021740 | AT3G53880.2 | 42.063 | 252 | 143 | 2 | 47 | 298 | 40 | 288 | 1.06e-69 | 219 |
| Msa0021740 | AT5G01670.1 | 38.111 | 307 | 170 | 6 | 20 | 315 | 24 | 321 | 1.91e-69 | 219 |
| Msa0021740 | AT5G01670.2 | 35.030 | 334 | 170 | 7 | 20 | 315 | 24 | 348 | 1.78e-63 | 204 |
| Msa0021740 | AT2G37760.6 | 42.623 | 244 | 129 | 2 | 81 | 315 | 23 | 264 | 3.41e-61 | 196 |
| Msa0021740 | AT2G37760.7 | 42.623 | 244 | 129 | 2 | 81 | 315 | 23 | 264 | 3.41e-61 | 196 |
| Msa0021740 | AT2G21250.1 | 34.899 | 298 | 178 | 7 | 20 | 307 | 11 | 302 | 1.18e-59 | 193 |
| Msa0021740 | AT2G21260.1 | 35.764 | 288 | 169 | 6 | 20 | 297 | 11 | 292 | 2.44e-59 | 192 |
| Msa0021740 | AT2G37770.1 | 45.977 | 174 | 91 | 2 | 41 | 214 | 34 | 204 | 1.70e-48 | 164 |
| Msa0021740 | AT2G21250.2 | 35.371 | 229 | 132 | 6 | 20 | 238 | 11 | 233 | 2.90e-43 | 149 |
| Msa0021740 | AT2G21260.2 | 32.877 | 219 | 135 | 4 | 89 | 297 | 8 | 224 | 2.46e-40 | 141 |
| Msa0021740 | AT1G06690.1 | 27.922 | 308 | 165 | 10 | 38 | 309 | 87 | 373 | 4.63e-23 | 98.6 |
| Msa0021740 | AT5G53580.1 | 23.958 | 288 | 160 | 11 | 45 | 293 | 80 | 347 | 2.44e-12 | 67.4 |
Find 115 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCCTGAAATTAGAATATT+TGG | 0.170879 | 1_1:+39296306 | Msa0021740:CDS |
| GCTCTTCAACTTGGTCTAAT+TGG | 0.184953 | 1_1:+39295001 | Msa0021740:CDS |
| AACAATCTTTGAGAAAATTA+TGG | 0.207584 | 1_1:+39297485 | Msa0021740:three_prime_UTR |
| GTTTATGTGGAAATACAAAA+TGG | 0.215056 | 1_1:+39297706 | Msa0021740:three_prime_UTR |
| GGTCCAAATATTCTAATTTC+AGG | 0.242698 | 1_1:-39296309 | None:intergenic |
| CTACTATGCAAAGTATGTTT+AGG | 0.279304 | 1_1:+39297642 | Msa0021740:three_prime_UTR |
| TCAGTGTGAAGCCTGGAAAT+TGG | 0.295904 | 1_1:+39296353 | Msa0021740:CDS |
| TTGTGTTCATTCCTAACCTT+TGG | 0.306436 | 1_1:+39297328 | Msa0021740:CDS |
| GGAAACTTAAGCCCAATATT+AGG | 0.313169 | 1_1:+39297356 | Msa0021740:exon |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1_1:+39294944 | Msa0021740:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.323344 | 1_1:+39296436 | Msa0021740:CDS |
| ATTGTCAGTAACCCAAAGTT+TGG | 0.339991 | 1_1:-39295050 | None:intergenic |
| TACTATGCAAAGTATGTTTA+GGG | 0.354106 | 1_1:+39297643 | Msa0021740:three_prime_UTR |
| TAGTGGACTGAACCTAATAT+TGG | 0.355352 | 1_1:-39297368 | None:intergenic |
| ACTACCCCAACTGGCCCCTT+TGG | 0.355628 | 1_1:-39296841 | None:intergenic |
| CTTTATCACCTCCAAACTTT+GGG | 0.360927 | 1_1:+39295039 | Msa0021740:CDS |
| TTATGGATTCAAGGAATTCA+TGG | 0.360980 | 1_1:+39297502 | Msa0021740:three_prime_UTR |
| GCCGGTTGGAAACTTCAAAA+TGG | 0.365856 | 1_1:-39297925 | None:intergenic |
| ATAACCGCTTTCTCTCCTTT+AGG | 0.371890 | 1_1:+39296816 | Msa0021740:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1_1:-39296762 | None:intergenic |
| TAGTGGAACAAGGGAATGTT+TGG | 0.380154 | 1_1:+39297952 | Msa0021740:three_prime_UTR |
| TGTGTTCATTCCTAACCTTT+GGG | 0.382649 | 1_1:+39297329 | Msa0021740:CDS |
| AGGAGCCAAAGGGGCCAGTT+GGG | 0.383611 | 1_1:+39296836 | Msa0021740:CDS |
| GTAATTGAAGCTATCAAATC+AGG | 0.391570 | 1_1:+39294911 | Msa0021740:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1_1:+39295038 | Msa0021740:CDS |
| GTTTCCCCATCCCAAAGGTT+AGG | 0.400915 | 1_1:-39297339 | None:intergenic |
| TACGGCAATTCCCAATTTCC+AGG | 0.402725 | 1_1:-39296364 | None:intergenic |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1_1:+39296519 | Msa0021740:CDS |
| CACTGGCATGTTGCATTGGT+TGG | 0.406407 | 1_1:-39294831 | None:intergenic |
| TTGAGAAAATTATGGATTCA+AGG | 0.407390 | 1_1:+39297493 | Msa0021740:three_prime_UTR |
| TTTATGTGGAAATACAAAAT+GGG | 0.409330 | 1_1:+39297707 | Msa0021740:three_prime_UTR |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1_1:+39294962 | Msa0021740:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1_1:+39297238 | Msa0021740:CDS |
| CAGTGTGAAGCCTGGAAATT+GGG | 0.412320 | 1_1:+39296354 | Msa0021740:CDS |
| TTAGGCCTTACAAAATCTAT+AGG | 0.420838 | 1_1:+39296454 | Msa0021740:CDS |
| TAGCACCTTGAAGCCGGATT+GGG | 0.428576 | 1_1:-39297602 | None:intergenic |
| GTTTCCAACCGGCATATTAG+TGG | 0.430010 | 1_1:+39297935 | Msa0021740:three_prime_UTR |
| TTCATTCCTAACCTTTGGGA+TGG | 0.431912 | 1_1:+39297333 | Msa0021740:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1_1:-39296850 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1_1:+39297182 | Msa0021740:CDS |
| ATGTCACTCACTTGTTTATG+TGG | 0.449775 | 1_1:+39297693 | Msa0021740:three_prime_UTR |
| TTCTCTCCTTTAGGAGCCAA+AGG | 0.450688 | 1_1:+39296825 | Msa0021740:CDS |
| AGTGGACTGAACCTAATATT+GGG | 0.451967 | 1_1:-39297367 | None:intergenic |
| GTCCAAATATTCTAATTTCA+GGG | 0.456988 | 1_1:-39296308 | None:intergenic |
| TGGACCTTTATTTGATCCAC+TGG | 0.459426 | 1_1:+39296326 | Msa0021740:CDS |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1_1:+39296854 | Msa0021740:CDS |
| AATTTCCCAATCCGGCTTCA+AGG | 0.470403 | 1_1:+39297597 | Msa0021740:three_prime_UTR |
| CCCTTGTTCCACTAATATGC+CGG | 0.471076 | 1_1:-39297943 | None:intergenic |
| CATTCCTAACCTTTGGGATG+GGG | 0.471590 | 1_1:+39297335 | Msa0021740:CDS |
| ATAATGACAATTTCCCAATC+CGG | 0.472714 | 1_1:+39297589 | Msa0021740:three_prime_UTR |
| AACATGCCAGTGATAGCATT+TGG | 0.478930 | 1_1:+39294842 | Msa0021740:CDS |
| TCTCTCCTTTAGGAGCCAAA+GGG | 0.478990 | 1_1:+39296826 | Msa0021740:CDS |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1_1:+39297301 | Msa0021740:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1_1:-39295091 | None:intergenic |
| AGGTTAGGAATGAACACAAC+TGG | 0.482133 | 1_1:-39297324 | None:intergenic |
| AAAAGAATACTGTGAATCAA+AGG | 0.482547 | 1_1:+39296785 | Msa0021740:CDS |
| GGAGAGAATGAAGCAAAACT+TGG | 0.486339 | 1_1:+39297224 | Msa0021740:CDS |
| TAGGAGCCAAAGGGGCCAGT+TGG | 0.490078 | 1_1:+39296835 | Msa0021740:CDS |
| TCACGCTAAAGTGATGATAG+TGG | 0.498222 | 1_1:-39297385 | None:intergenic |
| TGTTATAGGTATGTCTTAGA+TGG | 0.498955 | 1_1:+39297157 | Msa0021740:intron |
| ATATAAAAGCAAGAAAATGA+TGG | 0.501416 | 1_1:-39294704 | None:intergenic |
| TCATTCCTAACCTTTGGGAT+GGG | 0.502283 | 1_1:+39297334 | Msa0021740:CDS |
| TTAGCACCTTGAAGCCGGAT+TGG | 0.503856 | 1_1:-39297603 | None:intergenic |
| AAGATTTCAGCACAACTTGA+GGG | 0.504815 | 1_1:-39294805 | None:intergenic |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1_1:+39296748 | Msa0021740:intron |
| ATCATCACTTTAGCGTGAAT+AGG | 0.509058 | 1_1:+39297390 | Msa0021740:three_prime_UTR |
| TGGCCGATCAGTGTGAAGCC+TGG | 0.510496 | 1_1:+39296346 | Msa0021740:CDS |
| CTATCACTGGCATGTTGCAT+TGG | 0.517036 | 1_1:-39294835 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1_1:-39296532 | None:intergenic |
| GTCAGTAACCCAAAGTTTGG+AGG | 0.520736 | 1_1:-39295047 | None:intergenic |
| CTGGCCCCTTTGGCTCCTAA+AGG | 0.523489 | 1_1:-39296831 | None:intergenic |
| GTTATTAACTCTTCAGCATA+CGG | 0.525285 | 1_1:-39296382 | None:intergenic |
| GAAAGGAGTGTGGACATCAA+TGG | 0.528937 | 1_1:+39296417 | Msa0021740:CDS |
| GAAGATTTCAGCACAACTTG+AGG | 0.530579 | 1_1:-39294806 | None:intergenic |
| AAAGAATACTGTGAATCAAA+GGG | 0.530667 | 1_1:+39296786 | Msa0021740:CDS |
| TTTCCAGGCTTCACACTGAT+CGG | 0.538948 | 1_1:-39296349 | None:intergenic |
| GGAGCCAAAGGGGCCAGTTG+GGG | 0.542781 | 1_1:+39296837 | Msa0021740:CDS |
| TCGGCCAGTGGATCAAATAA+AGG | 0.543601 | 1_1:-39296330 | None:intergenic |
| GCGTGAATAGGACAAAACTT+AGG | 0.545282 | 1_1:+39297402 | Msa0021740:three_prime_UTR |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1_1:+39297300 | Msa0021740:CDS |
| TGTTCCACTAATATGCCGGT+TGG | 0.550571 | 1_1:-39297939 | None:intergenic |
| TATAAAAGCAAGAAAATGAT+GGG | 0.550689 | 1_1:-39294703 | None:intergenic |
| AACCATACGAAAAGCACGTA+AGG | 0.551352 | 1_1:+39297539 | Msa0021740:three_prime_UTR |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1_1:+39297171 | Msa0021740:CDS |
| ATAGAAGAAGCTCTTCAACT+TGG | 0.557954 | 1_1:+39294992 | Msa0021740:CDS |
| ATGATGGGACATGGAAGCAA+AGG | 0.558592 | 1_1:-39294688 | None:intergenic |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1_1:+39296400 | Msa0021740:CDS |
| ACAGCAAAATGGATACATGA+TGG | 0.562176 | 1_1:-39297766 | None:intergenic |
| TTATGTGGAAATACAAAATG+GGG | 0.563544 | 1_1:+39297708 | Msa0021740:three_prime_UTR |
| GCGGTACCAAATGCTATCAC+TGG | 0.564066 | 1_1:-39294848 | None:intergenic |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1_1:-39296404 | None:intergenic |
| ATCGTTGTTTGTTACAGCTG+CGG | 0.583633 | 1_1:-39294867 | None:intergenic |
| AGCAAGAAAATGATGGGACA+TGG | 0.583699 | 1_1:-39294697 | None:intergenic |
| TGATGGGACATGGAAGCAAA+GGG | 0.583985 | 1_1:-39294687 | None:intergenic |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1_1:-39296535 | None:intergenic |
| CTTACAAAATCTATAGGAGT+CGG | 0.597182 | 1_1:+39296460 | Msa0021740:CDS |
| CTTAAGTTTCCCCATCCCAA+AGG | 0.597848 | 1_1:-39297344 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1_1:+39296891 | Msa0021740:CDS |
| CTATGCAAAGTATGTTTAGG+GGG | 0.610221 | 1_1:+39297645 | Msa0021740:three_prime_UTR |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1_1:+39294955 | Msa0021740:CDS |
| GGCTCCTAAAGGAGAGAAAG+CGG | 0.617316 | 1_1:-39296820 | None:intergenic |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1_1:-39295076 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1_1:+39297173 | Msa0021740:CDS |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1_1:+39297172 | Msa0021740:CDS |
| ACCGGCATATTAGTGGAACA+AGG | 0.644737 | 1_1:+39297942 | Msa0021740:three_prime_UTR |
| CTCTCCTTTAGGAGCCAAAG+GGG | 0.646505 | 1_1:+39296827 | Msa0021740:CDS |
| GCTTCACACTGATCGGCCAG+TGG | 0.653185 | 1_1:-39296342 | None:intergenic |
| CCGGCATATTAGTGGAACAA+GGG | 0.662226 | 1_1:+39297943 | Msa0021740:three_prime_UTR |
| GGCTGTGAAGAGCTACAACA+AGG | 0.663022 | 1_1:+39297203 | Msa0021740:CDS |
| GGAAATTGTCATTATTAACG+CGG | 0.667274 | 1_1:-39297581 | None:intergenic |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1_1:+39296407 | Msa0021740:CDS |
| GATGATAGTATAACACTACT+CGG | 0.675408 | 1_1:-39294756 | None:intergenic |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1_1:+39296884 | Msa0021740:CDS |
| ACTATGCAAAGTATGTTTAG+GGG | 0.690200 | 1_1:+39297644 | Msa0021740:three_prime_UTR |
| GCAGCTGTAACAAACAACGA+TGG | 0.716105 | 1_1:+39294869 | Msa0021740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATAAATTTTTGTCT+TGG | + | chr1_1:39295152-39295171 | Msa0021740:intron | 10.0% |
| !!! | TAAAAATAGAATCATATTTT+TGG | - | chr1_1:39295377-39295396 | None:intergenic | 10.0% |
| !!! | AAGAAAAGTATTATATTATA+TGG | - | chr1_1:39295783-39295802 | None:intergenic | 10.0% |
| !! | TATAAATTGTTATAAATCAT+AGG | + | chr1_1:39295925-39295944 | Msa0021740:intron | 10.0% |
| !!! | AACTAAAAATACAATTTTTT+TGG | + | chr1_1:39297458-39297477 | Msa0021740:three_prime_UTR | 10.0% |
| !!! | TAATAATTCTAAGTTGATAA+AGG | - | chr1_1:39295133-39295152 | None:intergenic | 15.0% |
| !!! | AGAATTATTTGTATGATTTT+TGG | - | chr1_1:39295275-39295294 | None:intergenic | 15.0% |
| !! | CTTTAAATAATGATAATTTC+CGG | - | chr1_1:39295427-39295446 | None:intergenic | 15.0% |
| !! | GAAATTATCATTATTTAAAG+TGG | + | chr1_1:39295427-39295446 | Msa0021740:intron | 15.0% |
| !! | TTTAGAAAAAATAATACTTG+TGG | + | chr1_1:39295738-39295757 | Msa0021740:intron | 15.0% |
| !! | TGATACTATTAAGTTAATAT+TGG | - | chr1_1:39296238-39296257 | None:intergenic | 15.0% |
| !! | TATAAAAGCAAGAAAATGAT+GGG | - | chr1_1:39294706-39294725 | None:intergenic | 20.0% |
| !! | ATATAAAAGCAAGAAAATGA+TGG | - | chr1_1:39294707-39294726 | None:intergenic | 20.0% |
| !!! | TTTTCTTTACATCATAAAGT+TGG | + | chr1_1:39295224-39295243 | Msa0021740:intron | 20.0% |
| !! | TTAAATTAAAATTGAGGAAC+CGG | + | chr1_1:39295405-39295424 | Msa0021740:intron | 20.0% |
| !!! | TTATGATGTATTTGTTGATA+TGG | - | chr1_1:39295816-39295835 | None:intergenic | 20.0% |
| !!! | GATATATAAAAGTTTGTTAG+AGG | - | chr1_1:39296138-39296157 | None:intergenic | 20.0% |
| !! | TTAATAGTATCAAAACAACA+TGG | + | chr1_1:39296246-39296265 | Msa0021740:intron | 20.0% |
| !!! | TTTATTCAAGTTTATTAGCT+AGG | + | chr1_1:39297086-39297105 | Msa0021740:intron | 20.0% |
| !!! | TTATTCAAGTTTATTAGCTA+GGG | + | chr1_1:39297087-39297106 | Msa0021740:intron | 20.0% |
| !! | ATGATTATTCAACTATTTGA+TGG | + | chr1_1:39297113-39297132 | Msa0021740:intron | 20.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | + | chr1_1:39297238-39297257 | Msa0021740:CDS | 20.0% |
| !!! | AACAATCTTTGAGAAAATTA+TGG | + | chr1_1:39297485-39297504 | Msa0021740:three_prime_UTR | 20.0% |
| !! | TTTATGTGGAAATACAAAAT+GGG | + | chr1_1:39297707-39297726 | Msa0021740:three_prime_UTR | 20.0% |
| !! | AAAAAAATCAAACAGCAAAA+TGG | - | chr1_1:39297780-39297799 | None:intergenic | 20.0% |
| !!! | ATTTTGCTGTTTGATTTTTT+TGG | + | chr1_1:39297779-39297798 | Msa0021740:three_prime_UTR | 20.0% |
| !!! | GTATGATTTTTGGATTAGAA+TGG | - | chr1_1:39295265-39295284 | None:intergenic | 25.0% |
| ! | TCATAGAAACGGTTATAAAA+TGG | - | chr1_1:39295465-39295484 | None:intergenic | 25.0% |
| !!! | ATATCCTAAACTTTTGAGAT+AGG | + | chr1_1:39295606-39295625 | Msa0021740:intron | 25.0% |
| ! | TAAGTTTAAGAACTTGATAG+AGG | + | chr1_1:39295982-39296001 | Msa0021740:intron | 25.0% |
| ! | AAGTTTAAGAACTTGATAGA+GGG | + | chr1_1:39295983-39296002 | Msa0021740:intron | 25.0% |
| !!! | TTAGAGGTTTTTTCTTTACT+CGG | - | chr1_1:39296122-39296141 | None:intergenic | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+GGG | - | chr1_1:39296311-39296330 | None:intergenic | 25.0% |
| ! | AATTACAAAGTGATACTACA+TGG | - | chr1_1:39296672-39296691 | None:intergenic | 25.0% |
| ! | ATTAATATCCGATTAGAATG+TGG | - | chr1_1:39296716-39296735 | None:intergenic | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | + | chr1_1:39296728-39296747 | Msa0021740:intron | 25.0% |
| ! | AAAAGAATACTGTGAATCAA+AGG | + | chr1_1:39296785-39296804 | Msa0021740:CDS | 25.0% |
| ! | AAAGAATACTGTGAATCAAA+GGG | + | chr1_1:39296786-39296805 | Msa0021740:CDS | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | - | chr1_1:39296937-39296956 | None:intergenic | 25.0% |
| ! | GGAGTTAATATAATTCTTTG+TGG | + | chr1_1:39297134-39297153 | Msa0021740:intron | 25.0% |
| !!! | ATAATTCTTTGTGGTGTTAT+AGG | + | chr1_1:39297143-39297162 | Msa0021740:intron | 25.0% |
| ! | TTGAGAAAATTATGGATTCA+AGG | + | chr1_1:39297493-39297512 | Msa0021740:three_prime_UTR | 25.0% |
| ! | TACTATGCAAAGTATGTTTA+GGG | + | chr1_1:39297643-39297662 | Msa0021740:three_prime_UTR | 25.0% |
| ! | GTTTATGTGGAAATACAAAA+TGG | + | chr1_1:39297706-39297725 | Msa0021740:three_prime_UTR | 25.0% |
| ! | TTATGTGGAAATACAAAATG+GGG | + | chr1_1:39297708-39297727 | Msa0021740:three_prime_UTR | 25.0% |
| !!! | TTGTAGTTCGATTTTTTGTT+TGG | - | chr1_1:39297739-39297758 | None:intergenic | 25.0% |
| GATGATAGTATAACACTACT+CGG | - | chr1_1:39294759-39294778 | None:intergenic | 30.0% | |
| GTAATTGAAGCTATCAAATC+AGG | + | chr1_1:39294911-39294930 | Msa0021740:CDS | 30.0% | |
| TTTGACACTGCATCAATATA+TGG | + | chr1_1:39294944-39294963 | Msa0021740:CDS | 30.0% | |
| ! | AAGGTAAGAATTTTGCTTAC+TGG | - | chr1_1:39295114-39295133 | None:intergenic | 30.0% |
| GTTTGACCTTATAACTTCAA+AGG | - | chr1_1:39295502-39295521 | None:intergenic | 30.0% | |
| ACTAAGTATCAGAGTTTCAA+AGG | - | chr1_1:39295548-39295567 | None:intergenic | 30.0% | |
| GTATCCTATCTCAAAAGTTT+AGG | - | chr1_1:39295613-39295632 | None:intergenic | 30.0% | |
| TAAATCATAGGATCAAAGAG+AGG | + | chr1_1:39295937-39295956 | Msa0021740:intron | 30.0% | |
| AGTTTAAGAACTTGATAGAG+GGG | + | chr1_1:39295984-39296003 | Msa0021740:intron | 30.0% | |
| !! | TAGTTTGTTGATTCTCTAGT+AGG | - | chr1_1:39296077-39296096 | None:intergenic | 30.0% |
| TGATCACTGGAATTTGAAAA+GGG | - | chr1_1:39296173-39296192 | None:intergenic | 30.0% | |
| ATGATCACTGGAATTTGAAA+AGG | - | chr1_1:39296174-39296193 | None:intergenic | 30.0% | |
| CAATCATTGAAAATGATCAC+TGG | - | chr1_1:39296186-39296205 | None:intergenic | 30.0% | |
| GACCCTGAAATTAGAATATT+TGG | + | chr1_1:39296306-39296325 | Msa0021740:CDS | 30.0% | |
| GGTCCAAATATTCTAATTTC+AGG | - | chr1_1:39296312-39296331 | None:intergenic | 30.0% | |
| GTTATTAACTCTTCAGCATA+CGG | - | chr1_1:39296385-39296404 | None:intergenic | 30.0% | |
| ATAACCACATTTGATCTGAA+AGG | + | chr1_1:39296400-39296419 | Msa0021740:CDS | 30.0% | |
| ! | ATTTTGTAAGGCCTAATTTC+TGG | - | chr1_1:39296450-39296469 | None:intergenic | 30.0% |
| TTAGGCCTTACAAAATCTAT+AGG | + | chr1_1:39296454-39296473 | Msa0021740:CDS | 30.0% | |
| CTTACAAAATCTATAGGAGT+CGG | + | chr1_1:39296460-39296479 | Msa0021740:CDS | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | - | chr1_1:39296988-39297007 | None:intergenic | 30.0% | |
| TGTTATAGGTATGTCTTAGA+TGG | + | chr1_1:39297157-39297176 | Msa0021740:intron | 30.0% | |
| TTATGGATTCAAGGAATTCA+TGG | + | chr1_1:39297502-39297521 | Msa0021740:three_prime_UTR | 30.0% | |
| TATTAACGCGGAAAAAACTT+AGG | - | chr1_1:39297572-39297591 | None:intergenic | 30.0% | |
| GGAAATTGTCATTATTAACG+CGG | - | chr1_1:39297584-39297603 | None:intergenic | 30.0% | |
| ATAATGACAATTTCCCAATC+CGG | + | chr1_1:39297589-39297608 | Msa0021740:three_prime_UTR | 30.0% | |
| CTACTATGCAAAGTATGTTT+AGG | + | chr1_1:39297642-39297661 | Msa0021740:three_prime_UTR | 30.0% | |
| ACTATGCAAAGTATGTTTAG+GGG | + | chr1_1:39297644-39297663 | Msa0021740:three_prime_UTR | 30.0% | |
| TATGTTTAGGGGGATAAATT+GGG | + | chr1_1:39297655-39297674 | Msa0021740:three_prime_UTR | 30.0% | |
| !!! | TGTTTGATTTTTTTGGCTTC+TGG | + | chr1_1:39297786-39297805 | Msa0021740:three_prime_UTR | 30.0% |
| AAGATTTCAGCACAACTTGA+GGG | - | chr1_1:39294808-39294827 | None:intergenic | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | + | chr1_1:39294955-39294974 | Msa0021740:CDS | 35.0% | |
| ATAGAAGAAGCTCTTCAACT+TGG | + | chr1_1:39294992-39295011 | Msa0021740:CDS | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | + | chr1_1:39295038-39295057 | Msa0021740:CDS | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | + | chr1_1:39295039-39295058 | Msa0021740:CDS | 35.0% | |
| ATTGTCAGTAACCCAAAGTT+TGG | - | chr1_1:39295053-39295072 | None:intergenic | 35.0% | |
| GAGTTCAAAGCTCATAGAAA+CGG | - | chr1_1:39295476-39295495 | None:intergenic | 35.0% | |
| GACCTTATAACTTCAAAGGA+CGG | - | chr1_1:39295498-39295517 | None:intergenic | 35.0% | |
| TGAAACTCTGATACTTAGTG+CGG | + | chr1_1:39295549-39295568 | Msa0021740:intron | 35.0% | |
| TAGTATCAAAACAACATGGC+CGG | + | chr1_1:39296250-39296269 | Msa0021740:intron | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | + | chr1_1:39296436-39296455 | Msa0021740:CDS | 35.0% | |
| ! | CGACTCCTATAGATTTTGTA+AGG | - | chr1_1:39296462-39296481 | None:intergenic | 35.0% |
| !! | ATTTGCTATCATTCCTCCTT+CGG | + | chr1_1:39296519-39296538 | Msa0021740:CDS | 35.0% |
| AGTGACATAGATGAGCTTAT+TGG | - | chr1_1:39296558-39296577 | None:intergenic | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | - | chr1_1:39296586-39296605 | None:intergenic | 35.0% | |
| !! | CTAGTCTTGTAGTTTAACGT+CGG | + | chr1_1:39296596-39296615 | Msa0021740:intron | 35.0% |
| !! | TAAAATAGTTTTACAGCGCG+CGG | + | chr1_1:39296621-39296640 | Msa0021740:intron | 35.0% |
| TTAATGCCACCAAATATAGG+TGG | + | chr1_1:39296731-39296750 | Msa0021740:intron | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | - | chr1_1:39296743-39296762 | None:intergenic | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | + | chr1_1:39296854-39296873 | Msa0021740:CDS | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | + | chr1_1:39296884-39296903 | Msa0021740:CDS | 35.0% | |
| ACATGGCAAAAATATTGCTC+AGG | + | chr1_1:39296908-39296927 | Msa0021740:CDS | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | + | chr1_1:39297172-39297191 | Msa0021740:CDS | 35.0% | |
| AAACAGATTCGTGTCAACAA+TGG | + | chr1_1:39297300-39297319 | Msa0021740:CDS | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | + | chr1_1:39297301-39297320 | Msa0021740:CDS | 35.0% | |
| TTGTGTTCATTCCTAACCTT+TGG | + | chr1_1:39297328-39297347 | Msa0021740:CDS | 35.0% | |
| TGTGTTCATTCCTAACCTTT+GGG | + | chr1_1:39297329-39297348 | Msa0021740:CDS | 35.0% | |
| GGAAACTTAAGCCCAATATT+AGG | + | chr1_1:39297356-39297375 | Msa0021740:exon | 35.0% | |
| !! | AGTGGACTGAACCTAATATT+GGG | - | chr1_1:39297370-39297389 | None:intergenic | 35.0% |
| !! | TAGTGGACTGAACCTAATAT+TGG | - | chr1_1:39297371-39297390 | None:intergenic | 35.0% |
| ATCATCACTTTAGCGTGAAT+AGG | + | chr1_1:39297390-39297409 | Msa0021740:three_prime_UTR | 35.0% | |
| ! | TTCTCTATGTGCTTTTCGTA+TGG | + | chr1_1:39297430-39297449 | Msa0021740:three_prime_UTR | 35.0% |
| CTATGCAAAGTATGTTTAGG+GGG | + | chr1_1:39297645-39297664 | Msa0021740:three_prime_UTR | 35.0% | |
| GTATGTTTAGGGGGATAAAT+TGG | + | chr1_1:39297654-39297673 | Msa0021740:three_prime_UTR | 35.0% | |
| ATGTCACTCACTTGTTTATG+TGG | + | chr1_1:39297693-39297712 | Msa0021740:three_prime_UTR | 35.0% | |
| ACAGCAAAATGGATACATGA+TGG | - | chr1_1:39297769-39297788 | None:intergenic | 35.0% | |
| !!! | ACCATTTTGAAGTTTCCAAC+CGG | + | chr1_1:39297924-39297943 | Msa0021740:three_prime_UTR | 35.0% |
| ! | AGCAAGAAAATGATGGGACA+TGG | - | chr1_1:39294700-39294719 | None:intergenic | 40.0% |
| GAAGATTTCAGCACAACTTG+AGG | - | chr1_1:39294809-39294828 | None:intergenic | 40.0% | |
| AACATGCCAGTGATAGCATT+TGG | + | chr1_1:39294842-39294861 | Msa0021740:CDS | 40.0% | |
| ! | ATCGTTGTTTGTTACAGCTG+CGG | - | chr1_1:39294870-39294889 | None:intergenic | 40.0% |
| GCTCTTCAACTTGGTCTAAT+TGG | + | chr1_1:39295001-39295020 | Msa0021740:CDS | 40.0% | |
| !! | CTCCGTCCTTTGAAGTTATA+AGG | + | chr1_1:39295493-39295512 | Msa0021740:intron | 40.0% |
| GAAACTCTGATACTTAGTGC+GGG | + | chr1_1:39295550-39295569 | Msa0021740:intron | 40.0% | |
| CATGAGAGAAGAGACTCAAT+CGG | - | chr1_1:39295869-39295888 | None:intergenic | 40.0% | |
| !! | CTCGGTTAGAGTTTGTTAGT+AGG | - | chr1_1:39296104-39296123 | None:intergenic | 40.0% |
| ! | TGGACCTTTATTTGATCCAC+TGG | + | chr1_1:39296326-39296345 | Msa0021740:CDS | 40.0% |
| CACTCCTTTCAGATCAAATG+TGG | - | chr1_1:39296407-39296426 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | + | chr1_1:39296407-39296426 | Msa0021740:CDS | 40.0% | |
| GCAACATGCCACATTCTAAT+CGG | + | chr1_1:39296705-39296724 | Msa0021740:intron | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | - | chr1_1:39296740-39296759 | None:intergenic | 40.0% | |
| ATAACCGCTTTCTCTCCTTT+AGG | + | chr1_1:39296816-39296835 | Msa0021740:CDS | 40.0% | |
| AACTTCATTACTACCCCAAC+TGG | - | chr1_1:39296853-39296872 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | + | chr1_1:39296891-39296910 | Msa0021740:CDS | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | + | chr1_1:39297171-39297190 | Msa0021740:CDS | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | + | chr1_1:39297173-39297192 | Msa0021740:CDS | 40.0% | |
| GGAGAGAATGAAGCAAAACT+TGG | + | chr1_1:39297224-39297243 | Msa0021740:CDS | 40.0% | |
| AGGTTAGGAATGAACACAAC+TGG | - | chr1_1:39297327-39297346 | None:intergenic | 40.0% | |
| ! | TTCATTCCTAACCTTTGGGA+TGG | + | chr1_1:39297333-39297352 | Msa0021740:CDS | 40.0% |
| !! | TCATTCCTAACCTTTGGGAT+GGG | + | chr1_1:39297334-39297353 | Msa0021740:CDS | 40.0% |
| TCACGCTAAAGTGATGATAG+TGG | - | chr1_1:39297388-39297407 | None:intergenic | 40.0% | |
| GCGTGAATAGGACAAAACTT+AGG | + | chr1_1:39297402-39297421 | Msa0021740:three_prime_UTR | 40.0% | |
| ! | AACCATACGAAAAGCACGTA+AGG | + | chr1_1:39297539-39297558 | Msa0021740:three_prime_UTR | 40.0% |
| ! | TTCCTTACGTGCTTTTCGTA+TGG | - | chr1_1:39297544-39297563 | None:intergenic | 40.0% |
| !! | AGATTTTAGCACCTTGAAGC+CGG | - | chr1_1:39297611-39297630 | None:intergenic | 40.0% |
| TAGTGGAACAAGGGAATGTT+TGG | + | chr1_1:39297952-39297971 | Msa0021740:three_prime_UTR | 40.0% | |
| TGATGGGACATGGAAGCAAA+GGG | - | chr1_1:39294690-39294709 | None:intergenic | 45.0% | |
| ! | ATGATGGGACATGGAAGCAA+AGG | - | chr1_1:39294691-39294710 | None:intergenic | 45.0% |
| CTATCACTGGCATGTTGCAT+TGG | - | chr1_1:39294838-39294857 | None:intergenic | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | + | chr1_1:39294869-39294888 | Msa0021740:CDS | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | + | chr1_1:39294962-39294981 | Msa0021740:CDS | 45.0% | |
| GTCAGTAACCCAAAGTTTGG+AGG | - | chr1_1:39295050-39295069 | None:intergenic | 45.0% | |
| AGAGCAGGAAGAACAAGATG+AGG | - | chr1_1:39295079-39295098 | None:intergenic | 45.0% | |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | - | chr1_1:39295094-39295113 | None:intergenic | 45.0% |
| CGATTGAGTCTCTTCTCTCA+TGG | + | chr1_1:39295867-39295886 | Msa0021740:intron | 45.0% | |
| CAATTTCAGACCTTGTGCTC+CGG | - | chr1_1:39296272-39296291 | None:intergenic | 45.0% | |
| TGAAATTGATGCCATGCTGC+AGG | + | chr1_1:39296284-39296303 | Msa0021740:intron | 45.0% | |
| TCGGCCAGTGGATCAAATAA+AGG | - | chr1_1:39296333-39296352 | None:intergenic | 45.0% | |
| TTTCCAGGCTTCACACTGAT+CGG | - | chr1_1:39296352-39296371 | None:intergenic | 45.0% | |
| TCAGTGTGAAGCCTGGAAAT+TGG | + | chr1_1:39296353-39296372 | Msa0021740:CDS | 45.0% | |
| CAGTGTGAAGCCTGGAAATT+GGG | + | chr1_1:39296354-39296373 | Msa0021740:CDS | 45.0% | |
| TACGGCAATTCCCAATTTCC+AGG | - | chr1_1:39296367-39296386 | None:intergenic | 45.0% | |
| ! | GAAAGGAGTGTGGACATCAA+TGG | + | chr1_1:39296417-39296436 | Msa0021740:CDS | 45.0% |
| CTTACTTGATTGACCGAAGG+AGG | - | chr1_1:39296535-39296554 | None:intergenic | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | - | chr1_1:39296538-39296557 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | + | chr1_1:39296748-39296767 | Msa0021740:intron | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | - | chr1_1:39296765-39296784 | None:intergenic | 45.0% | |
| ! | TTCTCTCCTTTAGGAGCCAA+AGG | + | chr1_1:39296825-39296844 | Msa0021740:CDS | 45.0% |
| ! | TCTCTCCTTTAGGAGCCAAA+GGG | + | chr1_1:39296826-39296845 | Msa0021740:CDS | 45.0% |
| !! | CATTCCTAACCTTTGGGATG+GGG | + | chr1_1:39297335-39297354 | Msa0021740:CDS | 45.0% |
| CTTAAGTTTCCCCATCCCAA+AGG | - | chr1_1:39297347-39297366 | None:intergenic | 45.0% | |
| AATTTCCCAATCCGGCTTCA+AGG | + | chr1_1:39297597-39297616 | Msa0021740:three_prime_UTR | 45.0% | |
| GCCGGTTGGAAACTTCAAAA+TGG | - | chr1_1:39297928-39297947 | None:intergenic | 45.0% | |
| GTTTCCAACCGGCATATTAG+TGG | + | chr1_1:39297935-39297954 | Msa0021740:three_prime_UTR | 45.0% | |
| TGTTCCACTAATATGCCGGT+TGG | - | chr1_1:39297942-39297961 | None:intergenic | 45.0% | |
| ACCGGCATATTAGTGGAACA+AGG | + | chr1_1:39297942-39297961 | Msa0021740:three_prime_UTR | 45.0% | |
| CCCTTGTTCCACTAATATGC+CGG | - | chr1_1:39297946-39297965 | None:intergenic | 45.0% | |
| CCGGCATATTAGTGGAACAA+GGG | + | chr1_1:39297943-39297962 | Msa0021740:three_prime_UTR | 45.0% | |
| !!! | TTTATTTTAAATTAAAATTG+AGG | + | chr1_1:39295399-39295418 | Msa0021740:intron | 5.0% |
| ! | CACTGGCATGTTGCATTGGT+TGG | - | chr1_1:39294834-39294853 | None:intergenic | 50.0% |
| GCGGTACCAAATGCTATCAC+TGG | - | chr1_1:39294851-39294870 | None:intergenic | 50.0% | |
| AATTTCAGGGTCCTGCAGCA+TGG | - | chr1_1:39296298-39296317 | None:intergenic | 50.0% | |
| CGGCAGCAATTGAGTAGTCA+CGG | + | chr1_1:39296641-39296660 | Msa0021740:intron | 50.0% | |
| GGCTCCTAAAGGAGAGAAAG+CGG | - | chr1_1:39296823-39296842 | None:intergenic | 50.0% | |
| ! | CTCTCCTTTAGGAGCCAAAG+GGG | + | chr1_1:39296827-39296846 | Msa0021740:CDS | 50.0% |
| GTATGAGCAAGGGGTGACTA+TGG | + | chr1_1:39297182-39297201 | Msa0021740:CDS | 50.0% | |
| GGCTGTGAAGAGCTACAACA+AGG | + | chr1_1:39297203-39297222 | Msa0021740:CDS | 50.0% | |
| GTTTCCCCATCCCAAAGGTT+AGG | - | chr1_1:39297342-39297361 | None:intergenic | 50.0% | |
| TAGCACCTTGAAGCCGGATT+GGG | - | chr1_1:39297605-39297624 | None:intergenic | 50.0% | |
| TTAGCACCTTGAAGCCGGAT+TGG | - | chr1_1:39297606-39297625 | None:intergenic | 50.0% | |
| AACAACATGGCCGGAGCACA+AGG | + | chr1_1:39296259-39296278 | Msa0021740:intron | 55.0% | |
| GCTTCACACTGATCGGCCAG+TGG | - | chr1_1:39296345-39296364 | None:intergenic | 60.0% | |
| TGGCCGATCAGTGTGAAGCC+TGG | + | chr1_1:39296346-39296365 | Msa0021740:CDS | 60.0% | |
| ! | CTGGCCCCTTTGGCTCCTAA+AGG | - | chr1_1:39296834-39296853 | None:intergenic | 60.0% |
| TAGGAGCCAAAGGGGCCAGT+TGG | + | chr1_1:39296835-39296854 | Msa0021740:CDS | 60.0% | |
| AGGAGCCAAAGGGGCCAGTT+GGG | + | chr1_1:39296836-39296855 | Msa0021740:CDS | 60.0% | |
| ACTACCCCAACTGGCCCCTT+TGG | - | chr1_1:39296844-39296863 | None:intergenic | 60.0% | |
| GGAGCCAAAGGGGCCAGTTG+GGG | + | chr1_1:39296837-39296856 | Msa0021740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 39294676 | 39297998 | 39294676 | ID=Msa0021740;Name=Msa0021740 |
| chr1_1 | mRNA | 39294676 | 39297998 | 39294676 | ID=Msa0021740-mRNA-1;Parent=Msa0021740;Name=Msa0021740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=112|1|1|1|0.75|0.6|5|599|316 |
| chr1_1 | exon | 39294676 | 39295113 | 39294676 | ID=Msa0021740-mRNA-1:exon:12051;Parent=Msa0021740-mRNA-1 |
| chr1_1 | exon | 39296306 | 39296549 | 39296306 | ID=Msa0021740-mRNA-1:exon:12052;Parent=Msa0021740-mRNA-1 |
| chr1_1 | exon | 39296750 | 39296929 | 39296750 | ID=Msa0021740-mRNA-1:exon:12053;Parent=Msa0021740-mRNA-1 |
| chr1_1 | exon | 39297165 | 39297871 | 39297165 | ID=Msa0021740-mRNA-1:exon:12054;Parent=Msa0021740-mRNA-1 |
| chr1_1 | exon | 39297906 | 39297998 | 39297906 | ID=Msa0021740-mRNA-1:exon:12055;Parent=Msa0021740-mRNA-1 |
| chr1_1 | five_prime_UTR | 39294676 | 39294787 | 39294676 | ID=Msa0021740-mRNA-1:five_prime_utr;Parent=Msa0021740-mRNA-1 |
| chr1_1 | CDS | 39294788 | 39295113 | 39294788 | ID=Msa0021740-mRNA-1:cds;Parent=Msa0021740-mRNA-1 |
| chr1_1 | CDS | 39296306 | 39296549 | 39296306 | ID=Msa0021740-mRNA-1:cds;Parent=Msa0021740-mRNA-1 |
| chr1_1 | CDS | 39296750 | 39296929 | 39296750 | ID=Msa0021740-mRNA-1:cds;Parent=Msa0021740-mRNA-1 |
| chr1_1 | CDS | 39297165 | 39297365 | 39297165 | ID=Msa0021740-mRNA-1:cds;Parent=Msa0021740-mRNA-1 |
| chr1_1 | three_prime_UTR | 39297366 | 39297871 | 39297366 | ID=Msa0021740-mRNA-1:three_prime_utr;Parent=Msa0021740-mRNA-1 |
| chr1_1 | three_prime_UTR | 39297906 | 39297998 | 39297906 | ID=Msa0021740-mRNA-1:three_prime_utr;Parent=Msa0021740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
