AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154240 MtrunA17_Chr1g0164721 96.552 348 12 0 2 349 130 477 0.0 699
Msa0154240 MtrunA17_Chr2g0319981 35.714 112 71 1 31 142 155 265 2.22e-14 73.2
Msa0154240 MtrunA17_Chr4g0041461 39.000 100 59 2 26 125 152 249 4.57e-14 72.4
Msa0154240 MtrunA17_Chr1g0164711 52.113 71 28 2 11 80 2 67 6.31e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154240 AT5G23240.1 48.045 358 164 6 2 347 112 459 5.76e-111 331
Msa0154240 AT2G42750.1 32.143 112 75 1 31 142 161 271 2.67e-12 67.4

Find 75 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGATGAATGGAATTTA+TGG 0.158588 1_4:+18682855 None:intergenic
CTGACATTCTTGATTCTCTT+TGG 0.194662 1_4:+18683058 None:intergenic
CAATTTCCAACTGGTTATAT+TGG 0.229177 1_4:-18683017 Msa0154240:CDS
TCTCTTAGCTTACTAAGATT+TGG 0.253936 1_4:+18682931 None:intergenic
ACTGGCAATCCCCGTCTAAT+TGG 0.257361 1_4:+18682691 None:intergenic
TTCGCGATAGAATCCGTTTA+TGG 0.262210 1_4:-18684218 Msa0154240:CDS
CCATTCATCCTGAGGAATAT+TGG 0.276497 1_4:-18682846 Msa0154240:CDS
TTGGTGCCAGTTGCACTATT+TGG 0.284345 1_4:+18682991 None:intergenic
GAGATCCAACCTTGCTGCTT+TGG 0.303926 1_4:-18683884 Msa0154240:CDS
CCAGTGGTTACTTCATTGTT+TGG 0.318448 1_4:-18682673 Msa0154240:CDS
CTCTTGGTTGCAATATATAT+TGG 0.333927 1_4:-18682557 Msa0154240:CDS
TTGGGGAGGTTCTCTAGCTT+TGG 0.348620 1_4:-18682593 Msa0154240:CDS
AACCCTTGCTCTTCCATAAA+CGG 0.370236 1_4:+18684205 None:intergenic
GATACATGTAATATAAAGTT+AGG 0.391057 1_4:-18682416 Msa0154240:three_prime_UTR
TTCATTCACCTGAGAATACT+TGG 0.395135 1_4:+18683726 None:intergenic
TCAGGATGAATGGAATTTAT+GGG 0.397759 1_4:+18682856 None:intergenic
GCAAATGTAGCCTTCTCAAT+TGG 0.398006 1_4:+18682772 None:intergenic
TGGAAATCGTTAACAGCTCT+TGG 0.411043 1_4:-18682573 Msa0154240:CDS
AGTTGAGTTGAAAGAGCATT+GGG 0.412413 1_4:-18682611 Msa0154240:CDS
GAAGACCATTGTATTCAGTT+TGG 0.420412 1_4:-18684331 Msa0154240:CDS
ACATTCTTGATTCTCTTTGG+AGG 0.428803 1_4:+18683061 None:intergenic
ACAGAATTCAAAGGCTTCAC+TGG 0.429274 1_4:-18684353 Msa0154240:CDS
GAAGGAAGAACAACAGTTGA+TGG 0.432900 1_4:+18682820 None:intergenic
TCGATTTCTATTTCCAATGT+TGG 0.441877 1_4:+18682486 None:intergenic
GGTTACTTCATTGTTTGGTA+TGG 0.442830 1_4:-18682668 Msa0154240:CDS
CCAATATTCCTCAGGATGAA+TGG 0.445444 1_4:+18682846 None:intergenic
TGGCAACCAAATAGTGCAAC+TGG 0.446692 1_4:-18682997 Msa0154240:CDS
TGAAAATAGTCCAATTAGAC+GGG 0.464684 1_4:-18682701 Msa0154240:CDS
CAATAAGATCAATTTCCAAC+TGG 0.475149 1_4:-18683026 Msa0154240:CDS
GCAGCTACATGGTATGTGAT+TGG 0.477504 1_4:-18682532 Msa0154240:CDS
TTGAATTGCCTCATCAATTG+TGG 0.477513 1_4:+18684157 None:intergenic
GAGAAGGCTACATTTGCTAA+AGG 0.480645 1_4:-18682766 Msa0154240:CDS
AAGGGTTGCTGTAGAATTTG+TGG 0.483426 1_4:-18682509 Msa0154240:CDS
TGAATTGCCTCATCAATTGT+GGG 0.486266 1_4:+18684158 None:intergenic
AGCTTACTAAGATTTGGATC+AGG 0.486859 1_4:+18682937 None:intergenic
ACTTACGAAATGCAGTTGAC+AGG 0.489446 1_4:+18684128 None:intergenic
TGTTTGGTATGGCTGCAGTT+AGG 0.496837 1_4:-18682657 Msa0154240:CDS
GAACTCCAAAGCAGCAAGGT+TGG 0.505248 1_4:+18683879 None:intergenic
CTCAAACATATTTGTAGATG+TGG 0.509300 1_4:-18683791 Msa0154240:CDS
CAGTTGAGTTGAAAGAGCAT+TGG 0.510120 1_4:-18682612 Msa0154240:CDS
ATGAAAATAGTCCAATTAGA+CGG 0.517165 1_4:-18682702 Msa0154240:CDS
GTAGTAGTACTAGTTGAAGA+AGG 0.518499 1_4:+18682802 None:intergenic
GTTGATGAAATAAAATGTGT+TGG 0.520242 1_4:-18684275 Msa0154240:CDS
AGCAAGGGTTGTTTCTCAGT+GGG 0.533941 1_4:-18684192 Msa0154240:CDS
AAAAGCTACCAAGTATTCTC+AGG 0.534346 1_4:-18683734 Msa0154240:intron
GATGGAGTCCAATATTCCTC+AGG 0.534720 1_4:+18682838 None:intergenic
CTACATGGTATGTGATTGGA+AGG 0.538431 1_4:-18682528 Msa0154240:CDS
GTAGGTGCAAGTCATACAGC+AGG 0.546276 1_4:-18683823 Msa0154240:CDS
GTAGAATTTGTGGCCAACAT+TGG 0.550242 1_4:-18682499 Msa0154240:CDS
CAGGATGAATGGAATTTATG+GGG 0.557366 1_4:+18682857 None:intergenic
AATCCGTTTATGGAAGAGCA+AGG 0.576566 1_4:-18684208 Msa0154240:CDS
ATATATTGGTAGCAGCTACA+TGG 0.581246 1_4:-18682543 Msa0154240:CDS
ATCCGTTTATGGAAGAGCAA+GGG 0.583858 1_4:-18684207 Msa0154240:CDS
CCATTGTATTCAGTTTGGTG+TGG 0.590749 1_4:-18684326 Msa0154240:CDS
ACATATTTGTAGATGTGGAG+AGG 0.591397 1_4:-18683786 Msa0154240:CDS
CCACGTGGCAATGTAAGAGT+AGG 0.594070 1_4:-18683841 Msa0154240:CDS
GCAGTTAGGTTACATGAAGT+AGG 0.596129 1_4:-18682643 Msa0154240:CDS
CTTACGAAATGCAGTTGACA+GGG 0.598627 1_4:+18684129 None:intergenic
GCAAAGATCACAGAATTCAA+AGG 0.599426 1_4:-18684362 Msa0154240:CDS
TACTACTGCACCAATTGAGA+AGG 0.603819 1_4:-18682782 Msa0154240:CDS
CATAAATTCCATTCATCCTG+AGG 0.607786 1_4:-18682854 Msa0154240:CDS
CCAAACAATGAAGTAACCAC+TGG 0.612811 1_4:+18682673 None:intergenic
AATTAGACGGGGATTGCCAG+TGG 0.621632 1_4:-18682689 Msa0154240:CDS
TGGTTGCCAATATAACCAGT+TGG 0.622071 1_4:+18683011 None:intergenic
GAGCAAGGGTTGTTTCTCAG+TGG 0.633189 1_4:-18684193 Msa0154240:CDS
AGGATGAATGGAATTTATGG+GGG 0.638502 1_4:+18682858 None:intergenic
GAGTTGAAAGAGCATTGGGG+AGG 0.639356 1_4:-18682607 Msa0154240:CDS
TTCTGAACCCACAATTGATG+AGG 0.640325 1_4:-18684165 Msa0154240:CDS
TCAAGAACTCCAAAGCAGCA+AGG 0.655263 1_4:+18683875 None:intergenic
CCACACCAAACTGAATACAA+TGG 0.683154 1_4:+18684326 None:intergenic
GTTGAGTTGAAAGAGCATTG+GGG 0.697316 1_4:-18682610 Msa0154240:CDS
GAAAATAGTCCAATTAGACG+GGG 0.710030 1_4:-18682700 Msa0154240:CDS
TTGATGTCGAAGCAGCCACG+TGG 0.734249 1_4:-18683856 Msa0154240:CDS
CCTACTCTTACATTGCCACG+TGG 0.735405 1_4:+18683841 None:intergenic
TACATGGTATGTGATTGGAA+GGG 0.767981 1_4:-18682527 Msa0154240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATAAGAATTCAATTAA+AGG + chr1_4:18682496-18682515 None:intergenic 15.0%
!!! ATTGAATTCTTATTTGTTTT+TGG - chr1_4:18682499-18682518 Msa0154240:CDS 15.0%
!! AATTATTCAATGAATATACA+AGG + chr1_4:18682956-18682975 None:intergenic 15.0%
!! ACAAATAAGAATTCAATTAA+AGG + chr1_4:18682496-18682515 None:intergenic 15.0%
!!! ATTGAATTCTTATTTGTTTT+TGG - chr1_4:18682499-18682518 Msa0154240:CDS 15.0%
!! AATTATTCAATGAATATACA+AGG + chr1_4:18682956-18682975 None:intergenic 15.0%
!! TTGTAACTAAGAATTAAGAT+TGG - chr1_4:18682452-18682471 Msa0154240:three_prime_UTR 20.0%
!!! ATTCTTATTTGTTTTTGGTT+TGG - chr1_4:18682504-18682523 Msa0154240:CDS 20.0%
!!! ATTGATTTTAGTATGTTTGA+AGG - chr1_4:18683271-18683290 Msa0154240:intron 20.0%
!! TATGAAGACTTATCATATAA+GGG - chr1_4:18683548-18683567 Msa0154240:intron 20.0%
!! GATACATGTAATATAAAGTT+AGG - chr1_4:18684509-18684528 Msa0154240:intron 20.0%
!! TTGTAACTAAGAATTAAGAT+TGG - chr1_4:18682452-18682471 Msa0154240:three_prime_UTR 20.0%
!!! ATTCTTATTTGTTTTTGGTT+TGG - chr1_4:18682504-18682523 Msa0154240:CDS 20.0%
!!! ATTGATTTTAGTATGTTTGA+AGG - chr1_4:18683271-18683290 Msa0154240:intron 20.0%
!! TATGAAGACTTATCATATAA+GGG - chr1_4:18683548-18683567 Msa0154240:intron 20.0%
!! GATACATGTAATATAAAGTT+AGG - chr1_4:18684509-18684528 Msa0154240:intron 20.0%
!! GTTGATGAAATAAAATGTGT+TGG - chr1_4:18682650-18682669 Msa0154240:CDS 25.0%
! TGTATAAACTATTCTGTACT+TGG - chr1_4:18682833-18682852 Msa0154240:CDS 25.0%
!!! GAATTTTTGGATTCACTTTT+TGG - chr1_4:18683219-18683238 Msa0154240:intron 25.0%
! AAAGTGAGTTTATAGTGAAA+TGG + chr1_4:18683449-18683468 None:intergenic 25.0%
!! TTAAGTTGTTTATCGAACAA+AGG + chr1_4:18683514-18683533 None:intergenic 25.0%
! GTATGAAGACTTATCATATA+AGG - chr1_4:18683547-18683566 Msa0154240:intron 25.0%
! TTCATATAAGCTATAAACTG+TGG - chr1_4:18683619-18683638 Msa0154240:intron 25.0%
! AATTTATCCTAAAGAGCTTA+TGG - chr1_4:18683646-18683665 Msa0154240:intron 25.0%
! ATTATTTCCATAAGCTCTTT+AGG + chr1_4:18683656-18683675 None:intergenic 25.0%
! TAATTCACAGTGAAATAATG+AGG + chr1_4:18683814-18683833 None:intergenic 25.0%
! ATGAAAATAGTCCAATTAGA+CGG - chr1_4:18684223-18684242 Msa0154240:CDS 25.0%
!! GTTGATGAAATAAAATGTGT+TGG - chr1_4:18682650-18682669 Msa0154240:CDS 25.0%
! TGTATAAACTATTCTGTACT+TGG - chr1_4:18682833-18682852 Msa0154240:CDS 25.0%
!!! GAATTTTTGGATTCACTTTT+TGG - chr1_4:18683219-18683238 Msa0154240:intron 25.0%
! AAAGTGAGTTTATAGTGAAA+TGG + chr1_4:18683449-18683468 None:intergenic 25.0%
!! TTAAGTTGTTTATCGAACAA+AGG + chr1_4:18683514-18683533 None:intergenic 25.0%
! GTATGAAGACTTATCATATA+AGG - chr1_4:18683547-18683566 Msa0154240:intron 25.0%
! TTCATATAAGCTATAAACTG+TGG - chr1_4:18683619-18683638 Msa0154240:intron 25.0%
! AATTTATCCTAAAGAGCTTA+TGG - chr1_4:18683646-18683665 Msa0154240:intron 25.0%
! ATTATTTCCATAAGCTCTTT+AGG + chr1_4:18683656-18683675 None:intergenic 25.0%
! TAATTCACAGTGAAATAATG+AGG + chr1_4:18683814-18683833 None:intergenic 25.0%
! ATGAAAATAGTCCAATTAGA+CGG - chr1_4:18684223-18684242 Msa0154240:CDS 25.0%
!! TCAGATGGATTGATTTAACA+AGG - chr1_4:18682391-18682410 Msa0154240:three_prime_UTR 30.0%
TGATTTAACAAGGAAGACAT+CGG - chr1_4:18682401-18682420 Msa0154240:three_prime_UTR 30.0%
GCTTATAGTATGACAAAATG+TGG - chr1_4:18682529-18682548 Msa0154240:CDS 30.0%
CTCAAACATATTTGTAGATG+TGG - chr1_4:18683134-18683153 Msa0154240:intron 30.0%
! TTCTCAGGTGAATGAATTTT+TGG - chr1_4:18683206-18683225 Msa0154240:intron 30.0%
TGAAGGCAAGAGATTAAAAT+TGG - chr1_4:18683288-18683307 Msa0154240:intron 30.0%
TCAAGTTAGAATCAACTCTA+CGG + chr1_4:18683319-18683338 None:intergenic 30.0%
AAAACACATTCGAACTTTGA+AGG + chr1_4:18683365-18683384 None:intergenic 30.0%
TATTGTTCAACTCACTTTCA+CGG - chr1_4:18683398-18683417 Msa0154240:intron 30.0%
TAACTCAATCACTTTCACAT+TGG - chr1_4:18683469-18683488 Msa0154240:intron 30.0%
AAACATTTGTGAGACTGTAT+GGG + chr1_4:18683728-18683747 None:intergenic 30.0%
TAAACATTTGTGAGACTGTA+TGG + chr1_4:18683729-18683748 None:intergenic 30.0%
!! ATTCGTGCTTTGAAGATTAA+GGG + chr1_4:18683790-18683809 None:intergenic 30.0%
!! AATTCGTGCTTTGAAGATTA+AGG + chr1_4:18683791-18683810 None:intergenic 30.0%
! ACAAAAGAAGATCTCTTTTC+AGG - chr1_4:18683834-18683853 Msa0154240:CDS 30.0%
CAATAAGATCAATTTCCAAC+TGG - chr1_4:18683899-18683918 Msa0154240:intron 30.0%
CAATTTCCAACTGGTTATAT+TGG - chr1_4:18683908-18683927 Msa0154240:intron 30.0%
TCTCTTAGCTTACTAAGATT+TGG + chr1_4:18683997-18684016 None:intergenic 30.0%
!! ATTTATGGGGGTTTTATGTT+TGG + chr1_4:18684058-18684077 None:intergenic 30.0%
TCAGGATGAATGGAATTTAT+GGG + chr1_4:18684072-18684091 None:intergenic 30.0%
TGAAAATAGTCCAATTAGAC+GGG - chr1_4:18684224-18684243 Msa0154240:CDS 30.0%
CTCTTGGTTGCAATATATAT+TGG - chr1_4:18684368-18684387 Msa0154240:CDS 30.0%
TCGATTTCTATTTCCAATGT+TGG + chr1_4:18684442-18684461 None:intergenic 30.0%
!! TCAGATGGATTGATTTAACA+AGG - chr1_4:18682391-18682410 Msa0154240:three_prime_UTR 30.0%
TGATTTAACAAGGAAGACAT+CGG - chr1_4:18682401-18682420 Msa0154240:three_prime_UTR 30.0%
GCTTATAGTATGACAAAATG+TGG - chr1_4:18682529-18682548 Msa0154240:CDS 30.0%
CTCAAACATATTTGTAGATG+TGG - chr1_4:18683134-18683153 Msa0154240:intron 30.0%
! TTCTCAGGTGAATGAATTTT+TGG - chr1_4:18683206-18683225 Msa0154240:intron 30.0%
TGAAGGCAAGAGATTAAAAT+TGG - chr1_4:18683288-18683307 Msa0154240:intron 30.0%
TCAAGTTAGAATCAACTCTA+CGG + chr1_4:18683319-18683338 None:intergenic 30.0%
AAAACACATTCGAACTTTGA+AGG + chr1_4:18683365-18683384 None:intergenic 30.0%
TATTGTTCAACTCACTTTCA+CGG - chr1_4:18683398-18683417 Msa0154240:intron 30.0%
TAACTCAATCACTTTCACAT+TGG - chr1_4:18683469-18683488 Msa0154240:intron 30.0%
AAACATTTGTGAGACTGTAT+GGG + chr1_4:18683728-18683747 None:intergenic 30.0%
TAAACATTTGTGAGACTGTA+TGG + chr1_4:18683729-18683748 None:intergenic 30.0%
!! ATTCGTGCTTTGAAGATTAA+GGG + chr1_4:18683790-18683809 None:intergenic 30.0%
!! AATTCGTGCTTTGAAGATTA+AGG + chr1_4:18683791-18683810 None:intergenic 30.0%
! ACAAAAGAAGATCTCTTTTC+AGG - chr1_4:18683834-18683853 Msa0154240:CDS 30.0%
CAATAAGATCAATTTCCAAC+TGG - chr1_4:18683899-18683918 Msa0154240:intron 30.0%
CAATTTCCAACTGGTTATAT+TGG - chr1_4:18683908-18683927 Msa0154240:intron 30.0%
TCTCTTAGCTTACTAAGATT+TGG + chr1_4:18683997-18684016 None:intergenic 30.0%
!! ATTTATGGGGGTTTTATGTT+TGG + chr1_4:18684058-18684077 None:intergenic 30.0%
TCAGGATGAATGGAATTTAT+GGG + chr1_4:18684072-18684091 None:intergenic 30.0%
TGAAAATAGTCCAATTAGAC+GGG - chr1_4:18684224-18684243 Msa0154240:CDS 30.0%
CTCTTGGTTGCAATATATAT+TGG - chr1_4:18684368-18684387 Msa0154240:CDS 30.0%
TCGATTTCTATTTCCAATGT+TGG + chr1_4:18684442-18684461 None:intergenic 30.0%
GCAAAGATCACAGAATTCAA+AGG - chr1_4:18682563-18682582 Msa0154240:CDS 35.0%
GAAGACCATTGTATTCAGTT+TGG - chr1_4:18682594-18682613 Msa0154240:CDS 35.0%
! CAGCTAACAAAGCACATTTT+AGG + chr1_4:18682679-18682698 None:intergenic 35.0%
TGAATTGCCTCATCAATTGT+GGG + chr1_4:18682770-18682789 None:intergenic 35.0%
TTGAATTGCCTCATCAATTG+TGG + chr1_4:18682771-18682790 None:intergenic 35.0%
CTGAGAGTTGCAATCAAATA+CGG - chr1_4:18682886-18682905 Msa0154240:CDS 35.0%
ACATATTTGTAGATGTGGAG+AGG - chr1_4:18683139-18683158 Msa0154240:intron 35.0%
AAAAGCTACCAAGTATTCTC+AGG - chr1_4:18683191-18683210 Msa0154240:intron 35.0%
TTCATTCACCTGAGAATACT+TGG + chr1_4:18683202-18683221 None:intergenic 35.0%
CAAGTTAGAATCAACTCTAC+GGG + chr1_4:18683318-18683337 None:intergenic 35.0%
AAAGGCTAAGCATAAAAGAG+TGG + chr1_4:18683496-18683515 None:intergenic 35.0%
ACATTCTTGATTCTCTTTGG+AGG + chr1_4:18683867-18683886 None:intergenic 35.0%
CTGACATTCTTGATTCTCTT+TGG + chr1_4:18683870-18683889 None:intergenic 35.0%
AGCTTACTAAGATTTGGATC+AGG + chr1_4:18683991-18684010 None:intergenic 35.0%
AGGATGAATGGAATTTATGG+GGG + chr1_4:18684070-18684089 None:intergenic 35.0%
CAGGATGAATGGAATTTATG+GGG + chr1_4:18684071-18684090 None:intergenic 35.0%
CTCAGGATGAATGGAATTTA+TGG + chr1_4:18684073-18684092 None:intergenic 35.0%
CATAAATTCCATTCATCCTG+AGG - chr1_4:18684071-18684090 Msa0154240:intron 35.0%
GTAGTAGTACTAGTTGAAGA+AGG + chr1_4:18684126-18684145 None:intergenic 35.0%
GAAAATAGTCCAATTAGACG+GGG - chr1_4:18684225-18684244 Msa0154240:CDS 35.0%
GGTTACTTCATTGTTTGGTA+TGG - chr1_4:18684257-18684276 Msa0154240:CDS 35.0%
!! AGTTGAGTTGAAAGAGCATT+GGG - chr1_4:18684314-18684333 Msa0154240:CDS 35.0%
! ATATATTGGTAGCAGCTACA+TGG - chr1_4:18684382-18684401 Msa0154240:intron 35.0%
TACATGGTATGTGATTGGAA+GGG - chr1_4:18684398-18684417 Msa0154240:intron 35.0%
GCAAAGATCACAGAATTCAA+AGG - chr1_4:18682563-18682582 Msa0154240:CDS 35.0%
GAAGACCATTGTATTCAGTT+TGG - chr1_4:18682594-18682613 Msa0154240:CDS 35.0%
! CAGCTAACAAAGCACATTTT+AGG + chr1_4:18682679-18682698 None:intergenic 35.0%
TGAATTGCCTCATCAATTGT+GGG + chr1_4:18682770-18682789 None:intergenic 35.0%
TTGAATTGCCTCATCAATTG+TGG + chr1_4:18682771-18682790 None:intergenic 35.0%
CTGAGAGTTGCAATCAAATA+CGG - chr1_4:18682886-18682905 Msa0154240:CDS 35.0%
ACATATTTGTAGATGTGGAG+AGG - chr1_4:18683139-18683158 Msa0154240:intron 35.0%
AAAAGCTACCAAGTATTCTC+AGG - chr1_4:18683191-18683210 Msa0154240:intron 35.0%
TTCATTCACCTGAGAATACT+TGG + chr1_4:18683202-18683221 None:intergenic 35.0%
CAAGTTAGAATCAACTCTAC+GGG + chr1_4:18683318-18683337 None:intergenic 35.0%
AAAGGCTAAGCATAAAAGAG+TGG + chr1_4:18683496-18683515 None:intergenic 35.0%
ACATTCTTGATTCTCTTTGG+AGG + chr1_4:18683867-18683886 None:intergenic 35.0%
CTGACATTCTTGATTCTCTT+TGG + chr1_4:18683870-18683889 None:intergenic 35.0%
AGCTTACTAAGATTTGGATC+AGG + chr1_4:18683991-18684010 None:intergenic 35.0%
AGGATGAATGGAATTTATGG+GGG + chr1_4:18684070-18684089 None:intergenic 35.0%
CAGGATGAATGGAATTTATG+GGG + chr1_4:18684071-18684090 None:intergenic 35.0%
CTCAGGATGAATGGAATTTA+TGG + chr1_4:18684073-18684092 None:intergenic 35.0%
CATAAATTCCATTCATCCTG+AGG - chr1_4:18684071-18684090 Msa0154240:intron 35.0%
GTAGTAGTACTAGTTGAAGA+AGG + chr1_4:18684126-18684145 None:intergenic 35.0%
GAAAATAGTCCAATTAGACG+GGG - chr1_4:18684225-18684244 Msa0154240:CDS 35.0%
GGTTACTTCATTGTTTGGTA+TGG - chr1_4:18684257-18684276 Msa0154240:CDS 35.0%
!! AGTTGAGTTGAAAGAGCATT+GGG - chr1_4:18684314-18684333 Msa0154240:CDS 35.0%
! ATATATTGGTAGCAGCTACA+TGG - chr1_4:18684382-18684401 Msa0154240:intron 35.0%
TACATGGTATGTGATTGGAA+GGG - chr1_4:18684398-18684417 Msa0154240:intron 35.0%
TGTAGAAGAGTCTAGTCAGA+TGG - chr1_4:18682376-18682395 Msa0154240:three_prime_UTR 40.0%
AGTATGACAAAATGTGGTGC+AGG - chr1_4:18682535-18682554 Msa0154240:CDS 40.0%
ACAGAATTCAAAGGCTTCAC+TGG - chr1_4:18682572-18682591 Msa0154240:CDS 40.0%
CCACACCAAACTGAATACAA+TGG + chr1_4:18682602-18682621 None:intergenic 40.0%
! CCATTGTATTCAGTTTGGTG+TGG - chr1_4:18682599-18682618 Msa0154240:CDS 40.0%
TTCGCGATAGAATCCGTTTA+TGG - chr1_4:18682707-18682726 Msa0154240:CDS 40.0%
AATCCGTTTATGGAAGAGCA+AGG - chr1_4:18682717-18682736 Msa0154240:CDS 40.0%
ATCCGTTTATGGAAGAGCAA+GGG - chr1_4:18682718-18682737 Msa0154240:CDS 40.0%
AACCCTTGCTCTTCCATAAA+CGG + chr1_4:18682723-18682742 None:intergenic 40.0%
TTCTGAACCCACAATTGATG+AGG - chr1_4:18682760-18682779 Msa0154240:CDS 40.0%
CTTACGAAATGCAGTTGACA+GGG + chr1_4:18682799-18682818 None:intergenic 40.0%
ACTTACGAAATGCAGTTGAC+AGG + chr1_4:18682800-18682819 None:intergenic 40.0%
!! TTGAAGATTAAGGGCTGGTT+TGG + chr1_4:18683781-18683800 None:intergenic 40.0%
TGGTTGCCAATATAACCAGT+TGG + chr1_4:18683917-18683936 None:intergenic 40.0%
! CGCAACTTTTGTCATGCTTT+TGG + chr1_4:18683956-18683975 None:intergenic 40.0%
CCAATATTCCTCAGGATGAA+TGG + chr1_4:18684082-18684101 None:intergenic 40.0%
CCATTCATCCTGAGGAATAT+TGG - chr1_4:18684079-18684098 Msa0154240:intron 40.0%
GAAGGAAGAACAACAGTTGA+TGG + chr1_4:18684108-18684127 None:intergenic 40.0%
TACTACTGCACCAATTGAGA+AGG - chr1_4:18684143-18684162 Msa0154240:CDS 40.0%
GCAAATGTAGCCTTCTCAAT+TGG + chr1_4:18684156-18684175 None:intergenic 40.0%
! GAGAAGGCTACATTTGCTAA+AGG - chr1_4:18684159-18684178 Msa0154240:CDS 40.0%
CCAAACAATGAAGTAACCAC+TGG + chr1_4:18684255-18684274 None:intergenic 40.0%
CCAGTGGTTACTTCATTGTT+TGG - chr1_4:18684252-18684271 Msa0154240:CDS 40.0%
GCAGTTAGGTTACATGAAGT+AGG - chr1_4:18684282-18684301 Msa0154240:CDS 40.0%
!! CAGTTGAGTTGAAAGAGCAT+TGG - chr1_4:18684313-18684332 Msa0154240:CDS 40.0%
!! GTTGAGTTGAAAGAGCATTG+GGG - chr1_4:18684315-18684334 Msa0154240:CDS 40.0%
TGGAAATCGTTAACAGCTCT+TGG - chr1_4:18684352-18684371 Msa0154240:CDS 40.0%
CTACATGGTATGTGATTGGA+AGG - chr1_4:18684397-18684416 Msa0154240:intron 40.0%
AAGGGTTGCTGTAGAATTTG+TGG - chr1_4:18684416-18684435 Msa0154240:intron 40.0%
GTAGAATTTGTGGCCAACAT+TGG - chr1_4:18684426-18684445 Msa0154240:intron 40.0%
TGTAGAAGAGTCTAGTCAGA+TGG - chr1_4:18682376-18682395 Msa0154240:three_prime_UTR 40.0%
AGTATGACAAAATGTGGTGC+AGG - chr1_4:18682535-18682554 Msa0154240:CDS 40.0%
ACAGAATTCAAAGGCTTCAC+TGG - chr1_4:18682572-18682591 Msa0154240:CDS 40.0%
CCACACCAAACTGAATACAA+TGG + chr1_4:18682602-18682621 None:intergenic 40.0%
! CCATTGTATTCAGTTTGGTG+TGG - chr1_4:18682599-18682618 Msa0154240:CDS 40.0%
TTCGCGATAGAATCCGTTTA+TGG - chr1_4:18682707-18682726 Msa0154240:CDS 40.0%
AATCCGTTTATGGAAGAGCA+AGG - chr1_4:18682717-18682736 Msa0154240:CDS 40.0%
ATCCGTTTATGGAAGAGCAA+GGG - chr1_4:18682718-18682737 Msa0154240:CDS 40.0%
AACCCTTGCTCTTCCATAAA+CGG + chr1_4:18682723-18682742 None:intergenic 40.0%
TTCTGAACCCACAATTGATG+AGG - chr1_4:18682760-18682779 Msa0154240:CDS 40.0%
CTTACGAAATGCAGTTGACA+GGG + chr1_4:18682799-18682818 None:intergenic 40.0%
ACTTACGAAATGCAGTTGAC+AGG + chr1_4:18682800-18682819 None:intergenic 40.0%
!! TTGAAGATTAAGGGCTGGTT+TGG + chr1_4:18683781-18683800 None:intergenic 40.0%
TGGTTGCCAATATAACCAGT+TGG + chr1_4:18683917-18683936 None:intergenic 40.0%
! CGCAACTTTTGTCATGCTTT+TGG + chr1_4:18683956-18683975 None:intergenic 40.0%
CCAATATTCCTCAGGATGAA+TGG + chr1_4:18684082-18684101 None:intergenic 40.0%
CCATTCATCCTGAGGAATAT+TGG - chr1_4:18684079-18684098 Msa0154240:intron 40.0%
GAAGGAAGAACAACAGTTGA+TGG + chr1_4:18684108-18684127 None:intergenic 40.0%
TACTACTGCACCAATTGAGA+AGG - chr1_4:18684143-18684162 Msa0154240:CDS 40.0%
GCAAATGTAGCCTTCTCAAT+TGG + chr1_4:18684156-18684175 None:intergenic 40.0%
! GAGAAGGCTACATTTGCTAA+AGG - chr1_4:18684159-18684178 Msa0154240:CDS 40.0%
CCAAACAATGAAGTAACCAC+TGG + chr1_4:18684255-18684274 None:intergenic 40.0%
CCAGTGGTTACTTCATTGTT+TGG - chr1_4:18684252-18684271 Msa0154240:CDS 40.0%
GCAGTTAGGTTACATGAAGT+AGG - chr1_4:18684282-18684301 Msa0154240:CDS 40.0%
!! CAGTTGAGTTGAAAGAGCAT+TGG - chr1_4:18684313-18684332 Msa0154240:CDS 40.0%
!! GTTGAGTTGAAAGAGCATTG+GGG - chr1_4:18684315-18684334 Msa0154240:CDS 40.0%
TGGAAATCGTTAACAGCTCT+TGG - chr1_4:18684352-18684371 Msa0154240:CDS 40.0%
CTACATGGTATGTGATTGGA+AGG - chr1_4:18684397-18684416 Msa0154240:intron 40.0%
AAGGGTTGCTGTAGAATTTG+TGG - chr1_4:18684416-18684435 Msa0154240:intron 40.0%
GTAGAATTTGTGGCCAACAT+TGG - chr1_4:18684426-18684445 Msa0154240:intron 40.0%
!! AGCAAGGGTTGTTTCTCAGT+GGG - chr1_4:18682733-18682752 Msa0154240:CDS 45.0%
TGTCTATGCGACAGCAATTG+AGG + chr1_4:18682912-18682931 None:intergenic 45.0%
TCAAGAACTCCAAAGCAGCA+AGG + chr1_4:18683053-18683072 None:intergenic 45.0%
!! GTGCTTTGAAGATTAAGGGC+TGG + chr1_4:18683786-18683805 None:intergenic 45.0%
TGGCAACCAAATAGTGCAAC+TGG - chr1_4:18683928-18683947 Msa0154240:intron 45.0%
!! TTGGTGCCAGTTGCACTATT+TGG + chr1_4:18683937-18683956 None:intergenic 45.0%
GATGGAGTCCAATATTCCTC+AGG + chr1_4:18684090-18684109 None:intergenic 45.0%
TGTTTGGTATGGCTGCAGTT+AGG - chr1_4:18684268-18684287 Msa0154240:CDS 45.0%
GCAGCTACATGGTATGTGAT+TGG - chr1_4:18684393-18684412 Msa0154240:intron 45.0%
!! AGCAAGGGTTGTTTCTCAGT+GGG - chr1_4:18682733-18682752 Msa0154240:CDS 45.0%
TGTCTATGCGACAGCAATTG+AGG + chr1_4:18682912-18682931 None:intergenic 45.0%
TCAAGAACTCCAAAGCAGCA+AGG + chr1_4:18683053-18683072 None:intergenic 45.0%
!! GTGCTTTGAAGATTAAGGGC+TGG + chr1_4:18683786-18683805 None:intergenic 45.0%
TGGCAACCAAATAGTGCAAC+TGG - chr1_4:18683928-18683947 Msa0154240:intron 45.0%
!! TTGGTGCCAGTTGCACTATT+TGG + chr1_4:18683937-18683956 None:intergenic 45.0%
GATGGAGTCCAATATTCCTC+AGG + chr1_4:18684090-18684109 None:intergenic 45.0%
TGTTTGGTATGGCTGCAGTT+AGG - chr1_4:18684268-18684287 Msa0154240:CDS 45.0%
GCAGCTACATGGTATGTGAT+TGG - chr1_4:18684393-18684412 Msa0154240:intron 45.0%
!! GAGCAAGGGTTGTTTCTCAG+TGG - chr1_4:18682732-18682751 Msa0154240:CDS 50.0%
! GAGATCCAACCTTGCTGCTT+TGG - chr1_4:18683041-18683060 Msa0154240:CDS 50.0%
GAACTCCAAAGCAGCAAGGT+TGG + chr1_4:18683049-18683068 None:intergenic 50.0%
CCTACTCTTACATTGCCACG+TGG + chr1_4:18683087-18683106 None:intergenic 50.0%
CCACGTGGCAATGTAAGAGT+AGG - chr1_4:18683084-18683103 Msa0154240:intron 50.0%
GTAGGTGCAAGTCATACAGC+AGG - chr1_4:18683102-18683121 Msa0154240:intron 50.0%
ACTGGCAATCCCCGTCTAAT+TGG + chr1_4:18684237-18684256 None:intergenic 50.0%
AATTAGACGGGGATTGCCAG+TGG - chr1_4:18684236-18684255 Msa0154240:CDS 50.0%
!! GAGTTGAAAGAGCATTGGGG+AGG - chr1_4:18684318-18684337 Msa0154240:CDS 50.0%
! TTGGGGAGGTTCTCTAGCTT+TGG - chr1_4:18684332-18684351 Msa0154240:CDS 50.0%
!! GAGCAAGGGTTGTTTCTCAG+TGG - chr1_4:18682732-18682751 Msa0154240:CDS 50.0%
! GAGATCCAACCTTGCTGCTT+TGG - chr1_4:18683041-18683060 Msa0154240:CDS 50.0%
GAACTCCAAAGCAGCAAGGT+TGG + chr1_4:18683049-18683068 None:intergenic 50.0%
CCTACTCTTACATTGCCACG+TGG + chr1_4:18683087-18683106 None:intergenic 50.0%
CCACGTGGCAATGTAAGAGT+AGG - chr1_4:18683084-18683103 Msa0154240:intron 50.0%
GTAGGTGCAAGTCATACAGC+AGG - chr1_4:18683102-18683121 Msa0154240:intron 50.0%
ACTGGCAATCCCCGTCTAAT+TGG + chr1_4:18684237-18684256 None:intergenic 50.0%
AATTAGACGGGGATTGCCAG+TGG - chr1_4:18684236-18684255 Msa0154240:CDS 50.0%
!! GAGTTGAAAGAGCATTGGGG+AGG - chr1_4:18684318-18684337 Msa0154240:CDS 50.0%
! TTGGGGAGGTTCTCTAGCTT+TGG - chr1_4:18684332-18684351 Msa0154240:CDS 50.0%
TTGATGTCGAAGCAGCCACG+TGG - chr1_4:18683069-18683088 Msa0154240:CDS 55.0%
TTGATGTCGAAGCAGCCACG+TGG - chr1_4:18683069-18683088 Msa0154240:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 18682351 18684596 18682351 ID=Msa0154240;Name=Msa0154240
chr1_4 mRNA 18682351 18684596 18682351 ID=Msa0154240-mRNA-1;Parent=Msa0154240;Name=Msa0154240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.33|0.25|0.75|1|1|4|132|349
chr1_4 exon 18682351 18683091 18682351 ID=Msa0154240-mRNA-1:exon:6859;Parent=Msa0154240-mRNA-1
chr1_4 exon 18683735 18683915 18683735 ID=Msa0154240-mRNA-1:exon:6858;Parent=Msa0154240-mRNA-1
chr1_4 exon 18684134 18684390 18684134 ID=Msa0154240-mRNA-1:exon:6857;Parent=Msa0154240-mRNA-1
chr1_4 exon 18684594 18684596 18684594 ID=Msa0154240-mRNA-1:exon:6856;Parent=Msa0154240-mRNA-1
chr1_4 CDS 18684594 18684596 18684594 ID=Msa0154240-mRNA-1:cds;Parent=Msa0154240-mRNA-1
chr1_4 CDS 18684134 18684390 18684134 ID=Msa0154240-mRNA-1:cds;Parent=Msa0154240-mRNA-1
chr1_4 CDS 18683735 18683915 18683735 ID=Msa0154240-mRNA-1:cds;Parent=Msa0154240-mRNA-1
chr1_4 CDS 18682483 18683091 18682483 ID=Msa0154240-mRNA-1:cds;Parent=Msa0154240-mRNA-1
chr1_4 three_prime_UTR 18682351 18682482 18682351 ID=Msa0154240-mRNA-1:three_prime_utr;Parent=Msa0154240-mRNA-1
Gene Sequence

>Msa0154240

ATGGAGCATGCAAAGATCACAGAATTCAAAGGCTTCACTGGAAGACCATTGTATTCAGTTTGGTGTGGTTCACAAAGTGAACAGAGAGCTATATTTGTTGATGAAATAAAATGTGTTGGATGCCTAAAATGTGCTTTGTTAGCTGAAAAGACTTTCGCGATAGAATCCGTTTATGGAAGAGCAAGGGTTGTTTCTCAGTGGGCTGATTCTGAACCCACAATTGATGAGGCAATTCAAGCTTGCCCTGTCAACTGCATTTCAGTTGTTGAGAGATCCAACCTTGCTGCTTTGGAGTTCTTGATGTCGAAGCAGCCACGTGGCAATGTAAGAGTAGGTGCAAGTCATACAGCAGGTGCTCGTGTCTCAAACATATTTGTAGATGTGGAGAGGTTTCAGACTAGATTTCAAGAGACAATGCAAAAAGCTACCAAGTATTCTCAGGAAACAGACCTCCAAAGAGAATCAAGAATGTCAGCAATTCAAGCAATAAGATCAATTTCCAACTGGTTATATTGGCAACCAAATAGTGCAACTGGCACCAAAAGCATGACAAAAGTTGCGCAAAAATTACTACCTGATCCAAATCTTAGTAAGCTAAGAGATGCAGCTGCAAAGAGAAAATTAAAAGATACACAAAAAACCAAACATAAAACCCCCATAAATTCCATTCATCCTGAGGAATATTGGACTCCATCAACTGTTGTTCTTCCTTCTTCAACTAGTACTACTACTACTGCACCAATTGAGAAGGCTACATTTGCTAAAGGAAAGAAACAAAGAATAAGAAGTGATATTGAAACATATGAGAATGAAAATAGTCCAATTAGACGGGGATTGCCAGTGGTTACTTCATTGTTTGGTATGGCTGCAGTTAGGTTACATGAAGTAGGATCATCAACAGTTGAGTTGAAAGAGCATTGGGGAGGTTCTCTAGCTTTGGAAATCGTTAACAGCTCTTGGTTGCAATATATATTGGTAGCAGCTACATGGTATGTGATTGGAAGGGTTGCTGTAGAATTTGTGGCCAACATTGGAAATAGAAATCGATAG

Protein sequence

>Msa0154240

MEHAKITEFKGFTGRPLYSVWCGSQSEQRAIFVDEIKCVGCLKCALLAEKTFAIESVYGRARVVSQWADSEPTIDEAIQACPVNCISVVERSNLAALEFLMSKQPRGNVRVGASHTAGARVSNIFVDVERFQTRFQETMQKATKYSQETDLQRESRMSAIQAIRSISNWLYWQPNSATGTKSMTKVAQKLLPDPNLSKLRDAAAKRKLKDTQKTKHKTPINSIHPEEYWTPSTVVLPSSTSTTTTAPIEKATFAKGKKQRIRSDIETYENENSPIRRGLPVVTSLFGMAAVRLHEVGSSTVELKEHWGGSLALEIVNSSWLQYILVAATWYVIGRVAVEFVANIGNRNR*