Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069930 | XP_013441999.1 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069930 | sp|P26690|6DCS_SOYBN | 61.270 | 315 | 118 | 4 | 2 | 315 | 3 | 314 | 1.00e-136 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069930 | A0A072TEP5 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002140 | Msa0069930 | 0.809500 | 1.835087e-50 | -8.615850e-47 |
| Msa0064550 | Msa0069930 | 0.813810 | 2.119465e-51 | -8.615850e-47 |
| Msa0069930 | Msa0109490 | 0.809115 | 2.219344e-50 | -8.615850e-47 |
| Msa0069930 | Msa0154240 | 0.845088 | 5.051602e-59 | -8.615850e-47 |
| Msa0069930 | Msa0154270 | 0.814558 | 1.449421e-51 | -8.615850e-47 |
| Msa0069930 | Msa0160520 | 0.828013 | 1.137969e-54 | -8.615850e-47 |
| Msa0069930 | Msa0216220 | 0.827858 | 1.240361e-54 | -8.615850e-47 |
| Msa0069930 | Msa0260190 | 0.806233 | 9.085893e-50 | -8.615850e-47 |
| Msa0069930 | Msa0295570 | 0.814596 | 1.421640e-51 | -8.615850e-47 |
| Msa0069930 | Msa0344680 | 0.811273 | 7.604568e-51 | -8.615850e-47 |
| Msa0069930 | Msa0392050 | 0.810748 | 9.879447e-51 | -8.615850e-47 |
| Msa0069930 | Msa0469950 | 0.812654 | 3.803145e-51 | -8.615850e-47 |
| Msa0069930 | Msa0549540 | 0.802238 | 6.169595e-49 | -8.615850e-47 |
| Msa0069930 | Msa0604880 | 0.811128 | 8.171769e-51 | -8.615850e-47 |
| Msa0069930 | Msa0627050 | 0.820415 | 6.944197e-53 | -8.615850e-47 |
| Msa0069930 | Msa0646190 | 0.835880 | 1.296770e-56 | -8.615850e-47 |
| Msa0069930 | Msa0675010 | 0.819615 | 1.058326e-52 | -8.615850e-47 |
| Msa0069930 | Msa0681210 | 0.811607 | 6.434784e-51 | -8.615850e-47 |
| Msa0069930 | Msa0968780 | 0.803400 | 3.548918e-49 | -8.615850e-47 |
| Msa0069930 | Msa0984000 | 0.845572 | 3.736238e-59 | -8.615850e-47 |
| Msa0069930 | Msa1082150 | 0.809794 | 1.586382e-50 | -8.615850e-47 |
| Msa0069930 | Msa1144730 | 0.809011 | 2.335710e-50 | -8.615850e-47 |
| Msa0069930 | Msa1182830 | 0.803165 | 3.971537e-49 | -8.615850e-47 |
| Msa0069930 | Msa1306200 | 0.825363 | 4.884386e-54 | -8.615850e-47 |
| Msa0069930 | Msa1358340 | 0.804028 | 2.629679e-49 | -8.615850e-47 |
| Msa0069930 | Msa1359890 | 0.829043 | 6.417686e-55 | -8.615850e-47 |
| Msa0069930 | Msa1394900 | 0.822597 | 2.175542e-53 | -8.615850e-47 |
| Msa0069930 | Msa1459540 | 0.802621 | 5.143921e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069930 | MtrunA17_Chr1g0173621 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 638 |
| Msa0069930 | MtrunA17_Chr3g0121001 | 62.058 | 311 | 115 | 3 | 6 | 315 | 7 | 315 | 3.75e-140 | 398 |
| Msa0069930 | MtrunA17_Chr5g0447941 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 4.66e-128 | 368 |
| Msa0069930 | MtrunA17_Chr5g0447951 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 6.05e-128 | 367 |
| Msa0069930 | MtrunA17_Chr5g0447961 | 62.295 | 305 | 112 | 3 | 1 | 305 | 1 | 302 | 6.05e-128 | 367 |
| Msa0069930 | MtrunA17_Chr6g0479981 | 51.713 | 321 | 143 | 3 | 1 | 313 | 1 | 317 | 3.96e-111 | 325 |
| Msa0069930 | MtrunA17_Chr6g0480011 | 49.846 | 325 | 149 | 4 | 1 | 315 | 1 | 321 | 5.54e-108 | 317 |
| Msa0069930 | MtrunA17_Chr6g0480021 | 49.845 | 323 | 133 | 3 | 1 | 315 | 1 | 302 | 2.46e-106 | 312 |
| Msa0069930 | MtrunA17_Chr4g0018921 | 42.484 | 306 | 161 | 6 | 20 | 315 | 14 | 314 | 2.89e-84 | 256 |
| Msa0069930 | MtrunA17_Chr8g0368921 | 40.000 | 310 | 169 | 6 | 18 | 315 | 14 | 318 | 1.36e-75 | 234 |
| Msa0069930 | MtrunA17_Chr7g0239701 | 42.960 | 277 | 141 | 5 | 50 | 315 | 47 | 317 | 5.67e-72 | 225 |
| Msa0069930 | MtrunA17_Chr8g0368931 | 38.170 | 317 | 181 | 4 | 8 | 315 | 4 | 314 | 1.94e-71 | 223 |
| Msa0069930 | MtrunA17_Chr4g0009531 | 41.368 | 307 | 163 | 7 | 18 | 315 | 14 | 312 | 1.19e-66 | 211 |
| Msa0069930 | MtrunA17_Chr4g0036261 | 55.801 | 181 | 72 | 1 | 144 | 316 | 4 | 184 | 1.51e-65 | 204 |
| Msa0069930 | MtrunA17_Chr4g0036301 | 54.971 | 171 | 69 | 1 | 153 | 315 | 1 | 171 | 4.22e-60 | 189 |
| Msa0069930 | MtrunA17_Chr7g0243551 | 39.711 | 277 | 158 | 4 | 19 | 295 | 22 | 289 | 6.12e-60 | 194 |
| Msa0069930 | MtrunA17_Chr4g0009581 | 41.445 | 263 | 140 | 4 | 41 | 303 | 35 | 283 | 1.69e-59 | 192 |
| Msa0069930 | MtrunA17_Chr4g0036321 | 52.326 | 172 | 74 | 1 | 153 | 316 | 1 | 172 | 2.28e-56 | 180 |
| Msa0069930 | MtrunA17_Chr4g0036051 | 36.913 | 298 | 172 | 6 | 20 | 307 | 11 | 302 | 1.23e-55 | 182 |
| Msa0069930 | MtrunA17_Chr4g0009621 | 39.834 | 241 | 123 | 4 | 84 | 315 | 1 | 228 | 4.33e-45 | 153 |
| Msa0069930 | MtrunA17_Chr4g0036291 | 50.459 | 109 | 51 | 1 | 1 | 109 | 1 | 106 | 6.46e-32 | 115 |
| Msa0069930 | MtrunA17_Chr6g0479811 | 51.402 | 107 | 52 | 0 | 193 | 299 | 1 | 107 | 8.41e-32 | 115 |
| Msa0069930 | MtrunA17_Chr4g0036311 | 47.706 | 109 | 54 | 1 | 1 | 109 | 1 | 106 | 2.31e-30 | 111 |
| Msa0069930 | MtrunA17_Chr4g0036251 | 49.541 | 109 | 46 | 2 | 1 | 109 | 1 | 100 | 6.27e-29 | 107 |
| Msa0069930 | MtrunA17_Chr6g0479791 | 47.674 | 86 | 35 | 2 | 240 | 315 | 18 | 103 | 1.04e-18 | 80.1 |
| Msa0069930 | MtrunA17_Chr3g0095421 | 24.585 | 301 | 170 | 10 | 45 | 309 | 83 | 362 | 2.33e-15 | 75.9 |
| Msa0069930 | MtrunA17_Chr3g0127491 | 24.221 | 289 | 166 | 9 | 45 | 297 | 79 | 350 | 3.42e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069930 | AT1G59960.1 | 50.462 | 325 | 151 | 3 | 1 | 315 | 1 | 325 | 2.41e-121 | 352 |
| Msa0069930 | AT1G59950.1 | 54.426 | 305 | 130 | 2 | 20 | 315 | 15 | 319 | 3.75e-115 | 335 |
| Msa0069930 | AT5G62420.1 | 44.625 | 307 | 156 | 5 | 19 | 315 | 13 | 315 | 4.44e-85 | 259 |
| Msa0069930 | AT2G37790.1 | 41.176 | 306 | 166 | 4 | 18 | 315 | 14 | 313 | 1.98e-78 | 242 |
| Msa0069930 | AT2G37770.2 | 43.310 | 284 | 149 | 3 | 41 | 315 | 34 | 314 | 4.65e-78 | 241 |
| Msa0069930 | AT2G37760.2 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 7.10e-75 | 233 |
| Msa0069930 | AT2G37760.1 | 40.984 | 305 | 161 | 4 | 20 | 315 | 16 | 310 | 7.10e-75 | 233 |
| Msa0069930 | AT2G37760.5 | 42.199 | 282 | 153 | 3 | 18 | 299 | 14 | 285 | 1.11e-74 | 231 |
| Msa0069930 | AT2G37760.4 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 1.20e-74 | 231 |
| Msa0069930 | AT2G37760.3 | 42.049 | 283 | 154 | 3 | 18 | 300 | 14 | 286 | 1.20e-74 | 231 |
| Msa0069930 | AT3G53880.1 | 41.007 | 278 | 152 | 3 | 47 | 315 | 40 | 314 | 5.51e-73 | 228 |
| Msa0069930 | AT3G53880.2 | 42.063 | 252 | 143 | 2 | 47 | 298 | 40 | 288 | 3.09e-70 | 221 |
| Msa0069930 | AT5G01670.1 | 37.459 | 307 | 172 | 6 | 20 | 315 | 24 | 321 | 1.29e-68 | 217 |
| Msa0069930 | AT5G01670.2 | 34.431 | 334 | 172 | 7 | 20 | 315 | 24 | 348 | 1.13e-62 | 202 |
| Msa0069930 | AT2G37760.6 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 7.76e-62 | 197 |
| Msa0069930 | AT2G37760.7 | 40.769 | 260 | 142 | 3 | 65 | 315 | 8 | 264 | 7.76e-62 | 197 |
| Msa0069930 | AT2G21250.1 | 34.564 | 298 | 179 | 6 | 20 | 307 | 11 | 302 | 2.39e-59 | 192 |
| Msa0069930 | AT2G21260.1 | 35.417 | 288 | 170 | 7 | 20 | 297 | 11 | 292 | 1.79e-58 | 190 |
| Msa0069930 | AT2G37770.1 | 45.977 | 174 | 91 | 2 | 41 | 214 | 34 | 204 | 8.65e-49 | 164 |
| Msa0069930 | AT2G21250.2 | 35.371 | 229 | 132 | 6 | 20 | 238 | 11 | 233 | 5.39e-43 | 148 |
| Msa0069930 | AT2G21260.2 | 32.420 | 219 | 136 | 5 | 89 | 297 | 8 | 224 | 1.68e-39 | 139 |
| Msa0069930 | AT1G06690.1 | 28.247 | 308 | 164 | 11 | 38 | 309 | 87 | 373 | 1.28e-22 | 97.4 |
| Msa0069930 | AT5G53580.1 | 23.875 | 289 | 159 | 12 | 45 | 293 | 80 | 347 | 2.39e-12 | 67.4 |
Find 104 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCATGAAATTAGAATATT+TGG | 0.170879 | 1_2:-39167884 | Msa0069930:CDS |
| GCTCTTCAACTTGGTCTAAT+TGG | 0.184953 | 1_2:-39169524 | Msa0069930:CDS |
| GTTTATGTGGAAATACAAAA+TGG | 0.215056 | 1_2:-39166620 | Msa0069930:three_prime_UTR |
| TCCAACCGGCATATGTAATA+AGG | 0.222331 | 1_2:-39166420 | Msa0069930:three_prime_UTR |
| TTGTGTTCATTCCTAATCTT+TGG | 0.231133 | 1_2:-39166821 | Msa0069930:CDS |
| TCAGTGTGAAGCCGGGAAAT+TGG | 0.256916 | 1_2:-39167837 | Msa0069930:CDS |
| CTACTATGCAAAGTATGTTT+AGG | 0.279304 | 1_2:-39166684 | Msa0069930:three_prime_UTR |
| ATTGTTAGTGACCCAAAGTT+TGG | 0.316108 | 1_2:+39169475 | None:intergenic |
| TTTGACACTGCATCAATATA+TGG | 0.316665 | 1_2:-39169581 | Msa0069930:CDS |
| GGAAACTTAAGCCTAATATT+AGG | 0.321148 | 1_2:-39166793 | Msa0069930:exon |
| ATAACTGCTTTCTCTCCTTT+AGG | 0.323072 | 1_2:-39167325 | Msa0069930:CDS |
| ATGGAAGAATGCCAGAAATT+AGG | 0.335714 | 1_2:-39167754 | Msa0069930:CDS |
| GTCCAAATATTCTAATTTCA+TGG | 0.352675 | 1_2:+39167882 | None:intergenic |
| TACTATGCAAAGTATGTTTA+GGG | 0.354106 | 1_2:-39166683 | Msa0069930:three_prime_UTR |
| GTTTCCCCATCCCAAAGATT+AGG | 0.362212 | 1_2:+39166810 | None:intergenic |
| TGTGTTCATTCCTAATCTTT+GGG | 0.362959 | 1_2:-39166820 | Msa0069930:CDS |
| GCCGGTTGGAAACTTCAAAA+TGG | 0.365856 | 1_2:+39166433 | None:intergenic |
| CTTTATCACCTCCAAACTTT+GGG | 0.366153 | 1_2:-39169486 | Msa0069930:CDS |
| AGTGGACTGAACCTAATATT+AGG | 0.369572 | 1_2:+39166782 | None:intergenic |
| CAGTGTGAAGCCGGGAAATT+GGG | 0.376439 | 1_2:-39167836 | Msa0069930:CDS |
| AGCTTCTTCTGATGCCAAAC+TGG | 0.376503 | 1_2:+39167379 | None:intergenic |
| GTAATTGAAGCGATCAAATC+AGG | 0.386781 | 1_2:-39169614 | Msa0069930:CDS |
| AGGAGCGAAAGGGGCCAGTT+GGG | 0.392715 | 1_2:-39167305 | Msa0069930:CDS |
| TCTTTATCACCTCCAAACTT+TGG | 0.397007 | 1_2:-39169487 | Msa0069930:CDS |
| ATTTGCTATCATTCCTCCTT+CGG | 0.405885 | 1_2:-39167671 | Msa0069930:CDS |
| TTTATGTGGAAATACAAAAT+GGG | 0.408739 | 1_2:-39166619 | Msa0069930:three_prime_UTR |
| TACGGCAATTCCCAATTTCC+CGG | 0.409708 | 1_2:+39167826 | None:intergenic |
| TATGGCTCAGAAGAGGCTTT+AGG | 0.410339 | 1_2:-39169563 | Msa0069930:CDS |
| AAAACTTGGAAATATTTGAT+TGG | 0.411973 | 1_2:-39166911 | Msa0069930:CDS |
| CACTGGCATGTTACATTGGT+TGG | 0.417583 | 1_2:+39169694 | None:intergenic |
| TTAGGCCTTGCAAAATCTAT+AGG | 0.418202 | 1_2:-39167736 | Msa0069930:CDS |
| ATATGTAATAAGGGAATGTT+TGG | 0.422137 | 1_2:-39166410 | Msa0069930:three_prime_UTR |
| TTCATTCCTAATCTTTGGGA+TGG | 0.425282 | 1_2:-39166816 | Msa0069930:CDS |
| GAGCACCTTGAAGCCGGATT+GGG | 0.426137 | 1_2:+39166724 | None:intergenic |
| TGGACCTTTATTTGATCCAC+TGG | 0.428214 | 1_2:-39167864 | Msa0069930:CDS |
| AACTTCATTACTACCCCAAC+TGG | 0.445320 | 1_2:+39167291 | None:intergenic |
| TTCTCTCCTTTAGGAGCGAA+AGG | 0.447152 | 1_2:-39167316 | Msa0069930:CDS |
| TTTCCCGGCTTCACACTGAT+TGG | 0.447551 | 1_2:+39167841 | None:intergenic |
| GTATGAGCAAGGGGTGACTA+TGG | 0.448857 | 1_2:-39166967 | Msa0069930:CDS |
| ATGTCACTCACTTGTTTATG+TGG | 0.449775 | 1_2:-39166633 | Msa0069930:three_prime_UTR |
| AATATCCCAATCCGGCTTCA+AGG | 0.452666 | 1_2:-39166729 | Msa0069930:three_prime_UTR |
| TGAGCACCTTGAAGCCGGAT+TGG | 0.458949 | 1_2:+39166723 | None:intergenic |
| CATTCCCTTATTACATATGC+CGG | 0.462536 | 1_2:+39166415 | None:intergenic |
| GTTATTAATTCTTCAGCATA+CGG | 0.462926 | 1_2:+39167808 | None:intergenic |
| CTGGCCAATCAGTGTGAAGC+CGG | 0.465201 | 1_2:-39167845 | Msa0069930:CDS |
| CCAACCGGCATATGTAATAA+GGG | 0.466507 | 1_2:-39166419 | Msa0069930:three_prime_UTR |
| CTTTAGAAATAACTTATACA+AGG | 0.467735 | 1_2:+39166347 | None:intergenic |
| TTGGGGTAGTAATGAAGTTA+TGG | 0.468928 | 1_2:-39167287 | Msa0069930:CDS |
| CCCTTATTACATATGCCGGT+TGG | 0.468980 | 1_2:+39166419 | None:intergenic |
| GCAGAGAATGAAGCAAAACT+TGG | 0.473968 | 1_2:-39166925 | Msa0069930:CDS |
| TATACAAGGTTATACATGAA+TGG | 0.475532 | 1_2:+39166361 | None:intergenic |
| AACAGATTCGTGTCAACAAT+GGG | 0.479432 | 1_2:-39166848 | Msa0069930:CDS |
| AACATGCCAGTGATAGCATT+TGG | 0.480266 | 1_2:-39169683 | Msa0069930:CDS |
| TGGAGTGATTTCTGAAGAGC+AGG | 0.480636 | 1_2:+39169434 | None:intergenic |
| AGATTAGGAATGAACACAAC+TGG | 0.481723 | 1_2:+39166825 | None:intergenic |
| TATTCGTGTTGGTGGCGACC+TGG | 0.485435 | 1_2:-39169885 | None:intergenic |
| CATTCCTAATCTTTGGGATG+GGG | 0.488604 | 1_2:-39166814 | Msa0069930:CDS |
| TCTCTCCTTTAGGAGCGAAA+GGG | 0.492538 | 1_2:-39167315 | Msa0069930:CDS |
| TCATTCCTAATCTTTGGGAT+GGG | 0.495349 | 1_2:-39166815 | Msa0069930:CDS |
| ATATAAAAGCAAGAAAATGA+TGG | 0.501416 | 1_2:+39169824 | None:intergenic |
| AAGATTTCAGCACAACTTGA+GGG | 0.504815 | 1_2:+39169720 | None:intergenic |
| TAGGAGCGAAAGGGGCCAGT+TGG | 0.506852 | 1_2:-39167306 | Msa0069930:CDS |
| TGTTAAAGGTATGTCTTAGA+TGG | 0.508011 | 1_2:-39166992 | Msa0069930:intron |
| AGATTTGAGCACCTTGAAGC+CGG | 0.508254 | 1_2:+39166718 | None:intergenic |
| AGGTGGAGATGAATCCAGTT+TGG | 0.508462 | 1_2:-39167393 | Msa0069930:CDS |
| TTGGCCAGTGGATCAAATAA+AGG | 0.518534 | 1_2:+39167860 | None:intergenic |
| CTTACTTGATTGACCGAAGG+AGG | 0.519682 | 1_2:+39167658 | None:intergenic |
| GCTAAAGTGATGGATGATAG+TGG | 0.521142 | 1_2:+39166764 | None:intergenic |
| CTGGCCCCTTTCGCTCCTAA+AGG | 0.523489 | 1_2:+39167310 | None:intergenic |
| CACAAACACAATAATATGCC+AGG | 0.526971 | 1_2:+39169867 | None:intergenic |
| AAAAGAATACTGTGAAGCAA+AGG | 0.527118 | 1_2:-39167356 | Msa0069930:CDS |
| GAAGATTTCAGCACAACTTG+AGG | 0.530579 | 1_2:+39169719 | None:intergenic |
| GTTAGTGACCCAAAGTTTGG+AGG | 0.534520 | 1_2:+39169478 | None:intergenic |
| GGAGCGAAAGGGGCCAGTTG+GGG | 0.542781 | 1_2:-39167304 | Msa0069930:CDS |
| AAACAGATTCGTGTCAACAA+TGG | 0.549643 | 1_2:-39166849 | Msa0069930:CDS |
| TATAAAAGCAAGAAAATGAT+GGG | 0.550689 | 1_2:+39169825 | None:intergenic |
| AAAGAATACTGTGAAGCAAA+GGG | 0.552823 | 1_2:-39167355 | Msa0069930:CDS |
| GCCGTACCAAATGCTATCAC+TGG | 0.552904 | 1_2:+39169677 | None:intergenic |
| CTTAGATGGTTGTATGAGCA+AGG | 0.553980 | 1_2:-39166978 | Msa0069930:CDS |
| TGGCCAATCAGTGTGAAGCC+GGG | 0.555485 | 1_2:-39167844 | Msa0069930:CDS |
| ATAGAAGAAGCTCTTCAACT+TGG | 0.557954 | 1_2:-39169533 | Msa0069930:CDS |
| ATAACCACATTTGATCTGAA+AGG | 0.559708 | 1_2:-39167790 | Msa0069930:CDS |
| ACAGCAAAATGGATACATGA+TGG | 0.562176 | 1_2:+39166559 | None:intergenic |
| CTATCACTGGCATGTTACAT+TGG | 0.572838 | 1_2:+39169690 | None:intergenic |
| CACTCCTTTCAGATCAAATG+TGG | 0.582449 | 1_2:+39167786 | None:intergenic |
| GAAAGGAGTGTGGACAGCAA+TGG | 0.582486 | 1_2:-39167773 | Msa0069930:CDS |
| AGCAAGAAAATGATGGGACA+TGG | 0.583699 | 1_2:+39169831 | None:intergenic |
| CTCTCCTTTAGGAGCGAAAG+GGG | 0.586415 | 1_2:-39167314 | Msa0069930:CDS |
| GCCAGTGATAGCATTTGGTA+CGG | 0.589659 | 1_2:-39169678 | Msa0069930:CDS |
| TGGCTTACTTGATTGACCGA+AGG | 0.592154 | 1_2:+39167655 | None:intergenic |
| AAGCAAATTGCAGAGGAACA+TGG | 0.600046 | 1_2:-39167250 | Msa0069930:CDS |
| TTATGTGGAAATACAAAATG+GGG | 0.602168 | 1_2:-39166618 | Msa0069930:three_prime_UTR |
| CTATGCAAAGTATGTTTAGG+GGG | 0.610221 | 1_2:-39166681 | Msa0069930:three_prime_UTR |
| CAAAATGGATACATGATGGA+AGG | 0.612873 | 1_2:+39166563 | None:intergenic |
| ATCAATATATGGCTCAGAAG+AGG | 0.615079 | 1_2:-39169570 | Msa0069930:CDS |
| AGAGCAGGAAGAACAAGATG+AGG | 0.626023 | 1_2:+39169449 | None:intergenic |
| TAGATGGTTGTATGAGCAAG+GGG | 0.628862 | 1_2:-39166976 | Msa0069930:CDS |
| AAGAAAATGATGGGACATGG+AGG | 0.634480 | 1_2:+39169834 | None:intergenic |
| TTAGATGGTTGTATGAGCAA+GGG | 0.638177 | 1_2:-39166977 | Msa0069930:CDS |
| GCTTCACACTGATTGGCCAG+TGG | 0.662823 | 1_2:+39167848 | None:intergenic |
| CATTTGATCTGAAAGGAGTG+TGG | 0.668530 | 1_2:-39167783 | Msa0069930:CDS |
| AATACTCAAGCAAATTGCAG+AGG | 0.683311 | 1_2:-39167257 | Msa0069930:CDS |
| ACTATGCAAAGTATGTTTAG+GGG | 0.690200 | 1_2:-39166682 | Msa0069930:three_prime_UTR |
| GCAGCTGTAACAAACAACGA+TGG | 0.714604 | 1_2:-39169656 | Msa0069930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTTGTATGATTTT+TGG | + | chr1_2:39166806-39166825 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAGAGAATTATA+AGG | - | chr1_2:39167229-39167248 | Msa0069930:intron | 10.0% |
| !!! | TTTTTTTTAGAGAATTATAA+GGG | - | chr1_2:39167230-39167249 | Msa0069930:intron | 10.0% |
| !!! | ATTTTTTATCAGATATTTAT+AGG | + | chr1_2:39167687-39167706 | None:intergenic | 10.0% |
| !!! | AAAAATGAAAACCATATTTT+TGG | + | chr1_2:39166875-39166894 | None:intergenic | 15.0% |
| !!! | AAAAACATAACTTTTAAGTA+TGG | - | chr1_2:39167538-39167557 | Msa0069930:intron | 15.0% |
| !! | ACATATACAAAAACAATTTA+AGG | + | chr1_2:39169795-39169814 | None:intergenic | 15.0% |
| !! | TATAAAAGCAAGAAAATGAT+GGG | + | chr1_2:39166279-39166298 | None:intergenic | 20.0% |
| !! | ATATAAAAGCAAGAAAATGA+TGG | + | chr1_2:39166280-39166299 | None:intergenic | 20.0% |
| !!! | TAATAGTTCTAAATTGAAAG+AGG | + | chr1_2:39166709-39166728 | None:intergenic | 20.0% |
| !! | AGAATTATCATTATTCAAAG+TGG | - | chr1_2:39166925-39166944 | Msa0069930:CDS | 20.0% |
| !!! | ACAACTATTATTTTTTGAAG+TGG | + | chr1_2:39167363-39167382 | None:intergenic | 20.0% |
| !!! | CTTAAAAGTTATGTTTTTTG+TGG | + | chr1_2:39167536-39167555 | None:intergenic | 20.0% |
| !! | AATTACAAAGTGATATTACA+TGG | + | chr1_2:39168579-39168598 | None:intergenic | 20.0% |
| !!! | TTTATTCAAGTTTATTAGCT+AGG | - | chr1_2:39169039-39169058 | Msa0069930:intron | 20.0% |
| !!! | TTATTCAAGTTTATTAGCTA+GGG | - | chr1_2:39169040-39169059 | Msa0069930:intron | 20.0% |
| !! | AAAACTTGGAAATATTTGAT+TGG | - | chr1_2:39169190-39169209 | Msa0069930:intron | 20.0% |
| !!! | TTTTAATTTTGCTAAAGTGA+TGG | + | chr1_2:39169350-39169369 | None:intergenic | 20.0% |
| !! | TTAAAAATAATATCCCAATC+CGG | - | chr1_2:39169364-39169383 | Msa0069930:intron | 20.0% |
| !! | TTTATGTGGAAATACAAAAT+GGG | - | chr1_2:39169482-39169501 | Msa0069930:CDS | 20.0% |
| !! | AAAAAAATCAAACAGCAAAA+TGG | + | chr1_2:39169556-39169575 | None:intergenic | 20.0% |
| !!! | ATTTTGCTGTTTGATTTTTT+TGG | - | chr1_2:39169555-39169574 | Msa0069930:CDS | 20.0% |
| !!! | CTTTAGAAATAACTTATACA+AGG | + | chr1_2:39169757-39169776 | None:intergenic | 20.0% |
| ! | TCAAATTTGCATCATAAAGT+TGG | - | chr1_2:39166755-39166774 | Msa0069930:three_prime_UTR | 25.0% |
| !!! | GTATGATTTTTGGATTAGAA+TGG | + | chr1_2:39166796-39166815 | None:intergenic | 25.0% |
| !! | TTCTTTTGTCTCCAAAAATA+TGG | - | chr1_2:39166861-39166880 | Msa0069930:CDS | 25.0% |
| !!! | ACTATTTTACGATTGTTTCT+AGG | - | chr1_2:39166956-39166975 | Msa0069930:CDS | 25.0% |
| !!! | CTATTTTACGATTGTTTCTA+GGG | - | chr1_2:39166957-39166976 | Msa0069930:CDS | 25.0% |
| !!! | AATGCAAAGTTACCATTTTT+AGG | + | chr1_2:39167020-39167039 | None:intergenic | 25.0% |
| ! | TAAAAATGGTAACTTTGCAT+TGG | - | chr1_2:39167019-39167038 | Msa0069930:intron | 25.0% |
| ! | GAATTATAAGGGTAGTTATA+AGG | - | chr1_2:39167241-39167260 | Msa0069930:CDS | 25.0% |
| ! | AAATTGTGATCTTTGTATCT+GGG | + | chr1_2:39167293-39167312 | None:intergenic | 25.0% |
| ! | AGAAAATGTATAGTTACCAT+AGG | - | chr1_2:39167397-39167416 | Msa0069930:intron | 25.0% |
| ! | ATGAAGTGTATTATTTCCTA+TGG | + | chr1_2:39167416-39167435 | None:intergenic | 25.0% |
| !! | TTTTACCCGTAATCTTTTTT+AGG | - | chr1_2:39167610-39167629 | Msa0069930:intron | 25.0% |
| ! | ACGTATCCTAAAAAAGATTA+CGG | + | chr1_2:39167619-39167638 | None:intergenic | 25.0% |
| !!! | TCTTTTTTAGGATACGTATA+TGG | - | chr1_2:39167622-39167641 | Msa0069930:intron | 25.0% |
| ! | TAAGTATCATTGTGTATATG+TGG | - | chr1_2:39167656-39167675 | Msa0069930:intron | 25.0% |
| ! | AAAAATCATCCATGATATGA+AGG | + | chr1_2:39167866-39167885 | None:intergenic | 25.0% |
| ! | TGCAATCATTATTTGTTTGT+TGG | + | chr1_2:39168081-39168100 | None:intergenic | 25.0% |
| ! | TAAATAGCATCAAAACAACA+TGG | - | chr1_2:39168161-39168180 | Msa0069930:intron | 25.0% |
| ! | GACCATGAAATTAGAATATT+TGG | - | chr1_2:39168217-39168236 | Msa0069930:intron | 25.0% |
| ! | GTCCAAATATTCTAATTTCA+TGG | + | chr1_2:39168222-39168241 | None:intergenic | 25.0% |
| ! | GTTATTAATTCTTCAGCATA+CGG | + | chr1_2:39168296-39168315 | None:intergenic | 25.0% |
| ! | CAAAAATGCTGAATTCTAAT+TGG | - | chr1_2:39168617-39168636 | Msa0069930:intron | 25.0% |
| ! | ATATTAATGCCACCAAATAT+AGG | - | chr1_2:39168688-39168707 | Msa0069930:intron | 25.0% |
| ! | TAACTGATAGAAACTCAAAA+TGG | + | chr1_2:39168897-39168916 | None:intergenic | 25.0% |
| ! | ATAATCCTTTGTGATGTTAA+AGG | - | chr1_2:39169095-39169114 | Msa0069930:intron | 25.0% |
| ! | TACTATGCAAAGTATGTTTA+GGG | - | chr1_2:39169418-39169437 | Msa0069930:intron | 25.0% |
| ! | GTTTATGTGGAAATACAAAA+TGG | - | chr1_2:39169481-39169500 | Msa0069930:CDS | 25.0% |
| ! | TTATGTGGAAATACAAAATG+GGG | - | chr1_2:39169483-39169502 | Msa0069930:CDS | 25.0% |
| !!! | TTGTAGTTCGATTTTTTGTT+TGG | + | chr1_2:39169514-39169533 | None:intergenic | 25.0% |
| ! | ATATGTAATAAGGGAATGTT+TGG | - | chr1_2:39169691-39169710 | Msa0069930:CDS | 25.0% |
| ! | TATACAAGGTTATACATGAA+TGG | + | chr1_2:39169743-39169762 | None:intergenic | 25.0% |
| TTTGACACTGCATCAATATA+TGG | - | chr1_2:39166520-39166539 | Msa0069930:three_prime_UTR | 30.0% | |
| CATGTTAAGCAACCTAAAAA+TGG | - | chr1_2:39167005-39167024 | Msa0069930:intron | 30.0% | |
| GTTCAAAACTCATAGAAACA+AGG | + | chr1_2:39167153-39167172 | None:intergenic | 30.0% | |
| !! | ACTCCATCCTTTAAAGTTAT+AGG | - | chr1_2:39167171-39167190 | Msa0069930:intron | 30.0% |
| !! | CTCCATCCTTTAAAGTTATA+GGG | - | chr1_2:39167172-39167191 | Msa0069930:intron | 30.0% |
| ! | TACCCTATAACTTTAAAGGA+TGG | + | chr1_2:39167177-39167196 | None:intergenic | 30.0% |
| TTGGGTGACATTAGTTATAA+GGG | - | chr1_2:39167201-39167220 | Msa0069930:intron | 30.0% | |
| GAAATTGTGATCTTTGTATC+TGG | + | chr1_2:39167294-39167313 | None:intergenic | 30.0% | |
| ATACACTTCATTCTTCAGTT+TGG | - | chr1_2:39167425-39167444 | Msa0069930:intron | 30.0% | |
| CGTATCCTAAAAAAGATTAC+GGG | + | chr1_2:39167618-39167637 | None:intergenic | 30.0% | |
| TAAGATACTTCAATACTTCG+CGG | + | chr1_2:39167773-39167792 | None:intergenic | 30.0% | |
| ATAAATCACAGATCAAAGAG+AGG | - | chr1_2:39167927-39167946 | Msa0069930:intron | 30.0% | |
| TAAATCACAGATCAAAGAGA+GGG | - | chr1_2:39167928-39167947 | Msa0069930:intron | 30.0% | |
| TATGTTTAAGAGCTTGATAG+AGG | - | chr1_2:39167972-39167991 | Msa0069930:intron | 30.0% | |
| !! | TTATTTGTTTGTTGGTTCTC+TGG | + | chr1_2:39168073-39168092 | None:intergenic | 30.0% |
| ATAACCACATTTGATCTGAA+AGG | - | chr1_2:39168311-39168330 | Msa0069930:intron | 30.0% | |
| !! | CTAGTCTTGTAGTTTAATGT+CGG | - | chr1_2:39168507-39168526 | Msa0069930:intron | 30.0% |
| !! | TCGGTCTAAAATAGTTTTAC+AGG | - | chr1_2:39168526-39168545 | Msa0069930:intron | 30.0% |
| !! | CGGTCTAAAATAGTTTTACA+GGG | - | chr1_2:39168527-39168546 | Msa0069930:intron | 30.0% |
| !! | GGTCTAAAATAGTTTTACAG+GGG | - | chr1_2:39168528-39168547 | Msa0069930:intron | 30.0% |
| AAGTGATGAAGTATGAGAAA+TGG | + | chr1_2:39168667-39168686 | None:intergenic | 30.0% | |
| AAAAGAATACTGTGAAGCAA+AGG | - | chr1_2:39168745-39168764 | Msa0069930:intron | 30.0% | |
| AAAGAATACTGTGAAGCAAA+GGG | - | chr1_2:39168746-39168765 | Msa0069930:intron | 30.0% | |
| TTGTGCATGAAATACTCAAT+TGG | + | chr1_2:39168948-39168967 | None:intergenic | 30.0% | |
| ACATACCTTTAACATCACAA+AGG | + | chr1_2:39169103-39169122 | None:intergenic | 30.0% | |
| ! | TGTTAAAGGTATGTCTTAGA+TGG | - | chr1_2:39169109-39169128 | Msa0069930:intron | 30.0% |
| TTGTGTTCATTCCTAATCTT+TGG | - | chr1_2:39169280-39169299 | Msa0069930:intron | 30.0% | |
| TGTGTTCATTCCTAATCTTT+GGG | - | chr1_2:39169281-39169300 | Msa0069930:intron | 30.0% | |
| GGAAACTTAAGCCTAATATT+AGG | - | chr1_2:39169308-39169327 | Msa0069930:intron | 30.0% | |
| CTACTATGCAAAGTATGTTT+AGG | - | chr1_2:39169417-39169436 | Msa0069930:intron | 30.0% | |
| ACTATGCAAAGTATGTTTAG+GGG | - | chr1_2:39169419-39169438 | Msa0069930:intron | 30.0% | |
| TATGTTTAGGGGGATAAATT+GGG | - | chr1_2:39169430-39169449 | Msa0069930:intron | 30.0% | |
| !!! | TGTTTGATTTTTTTGGCTTC+TGG | - | chr1_2:39169562-39169581 | Msa0069930:CDS | 30.0% |
| CACAAACACAATAATATGCC+AGG | + | chr1_2:39166237-39166256 | None:intergenic | 35.0% | |
| AAGATTTCAGCACAACTTGA+GGG | + | chr1_2:39166384-39166403 | None:intergenic | 35.0% | |
| GTAATTGAAGCGATCAAATC+AGG | - | chr1_2:39166487-39166506 | Msa0069930:three_prime_UTR | 35.0% | |
| ATCAATATATGGCTCAGAAG+AGG | - | chr1_2:39166531-39166550 | Msa0069930:three_prime_UTR | 35.0% | |
| ATAGAAGAAGCTCTTCAACT+TGG | - | chr1_2:39166568-39166587 | Msa0069930:three_prime_UTR | 35.0% | |
| TCTTTATCACCTCCAAACTT+TGG | - | chr1_2:39166614-39166633 | Msa0069930:three_prime_UTR | 35.0% | |
| CTTTATCACCTCCAAACTTT+GGG | - | chr1_2:39166615-39166634 | Msa0069930:three_prime_UTR | 35.0% | |
| ATTGTTAGTGACCCAAAGTT+TGG | + | chr1_2:39166629-39166648 | None:intergenic | 35.0% | |
| GTTGCTTAACATGTGTCTTA+GGG | + | chr1_2:39166998-39167017 | None:intergenic | 35.0% | |
| GTGCTACCCTATAACTTTAA+AGG | + | chr1_2:39167181-39167200 | None:intergenic | 35.0% | |
| TAAAGTTATAGGGTAGCACT+TGG | - | chr1_2:39167182-39167201 | Msa0069930:intron | 35.0% | |
| AAAGTTATAGGGTAGCACTT+GGG | - | chr1_2:39167183-39167202 | Msa0069930:intron | 35.0% | |
| CTTGGGTGACATTAGTTATA+AGG | - | chr1_2:39167200-39167219 | Msa0069930:intron | 35.0% | |
| GCAAAATACACACGAAGTAT+CGG | + | chr1_2:39167737-39167756 | None:intergenic | 35.0% | |
| TAAGTAGCTACAAGTATCCA+CGG | - | chr1_2:39167793-39167812 | Msa0069930:CDS | 35.0% | |
| TATCATATACTGATACTCCG+TGG | + | chr1_2:39167813-39167832 | None:intergenic | 35.0% | |
| ! | CGGAGTATCAGTATATGATA+CGG | - | chr1_2:39167813-39167832 | Msa0069930:CDS | 35.0% |
| ! | AGTATCTAGCCTTCATATCA+TGG | - | chr1_2:39167854-39167873 | Msa0069930:CDS | 35.0% |
| TCAAAACAACATGGAGCATA+AGG | - | chr1_2:39168170-39168189 | Msa0069930:intron | 35.0% | |
| TGAAATTGATGCCATATTGC+AGG | - | chr1_2:39168195-39168214 | Msa0069930:intron | 35.0% | |
| AATTTCATGGTCCTGCAATA+TGG | + | chr1_2:39168209-39168228 | None:intergenic | 35.0% | |
| ATGGAAGAATGCCAGAAATT+AGG | - | chr1_2:39168347-39168366 | Msa0069930:intron | 35.0% | |
| ! | ATTTTGCAAGGCCTAATTTC+TGG | + | chr1_2:39168361-39168380 | None:intergenic | 35.0% |
| TTAGGCCTTGCAAAATCTAT+AGG | - | chr1_2:39168365-39168384 | Msa0069930:intron | 35.0% | |
| ! | TGACTCCTATAGATTTTGCA+AGG | + | chr1_2:39168373-39168392 | None:intergenic | 35.0% |
| !! | ATTTGCTATCATTCCTCCTT+CGG | - | chr1_2:39168430-39168449 | Msa0069930:intron | 35.0% |
| AGTGACATAGATGAGCTTAT+TGG | + | chr1_2:39168469-39168488 | None:intergenic | 35.0% | |
| ACAAGACTAGTGAAAGAGAA+AGG | + | chr1_2:39168497-39168516 | None:intergenic | 35.0% | |
| TTAATGCCACCAAATATAGG+TGG | - | chr1_2:39168691-39168710 | Msa0069930:intron | 35.0% | |
| GATTCATCTCCACCTATATT+TGG | + | chr1_2:39168703-39168722 | None:intergenic | 35.0% | |
| ATAACTGCTTTCTCTCCTTT+AGG | - | chr1_2:39168776-39168795 | Msa0069930:intron | 35.0% | |
| TTGGGGTAGTAATGAAGTTA+TGG | - | chr1_2:39168814-39168833 | Msa0069930:intron | 35.0% | |
| AATACTCAAGCAAATTGCAG+AGG | - | chr1_2:39168844-39168863 | Msa0069930:intron | 35.0% | |
| ACATGGCAAAAATATTGCTC+AGG | - | chr1_2:39168868-39168887 | Msa0069930:intron | 35.0% | |
| TTAGATGGTTGTATGAGCAA+GGG | - | chr1_2:39169124-39169143 | Msa0069930:intron | 35.0% | |
| AAACAGATTCGTGTCAACAA+TGG | - | chr1_2:39169252-39169271 | Msa0069930:intron | 35.0% | |
| AACAGATTCGTGTCAACAAT+GGG | - | chr1_2:39169253-39169272 | Msa0069930:intron | 35.0% | |
| AGATTAGGAATGAACACAAC+TGG | + | chr1_2:39169279-39169298 | None:intergenic | 35.0% | |
| ! | TTCATTCCTAATCTTTGGGA+TGG | - | chr1_2:39169285-39169304 | Msa0069930:intron | 35.0% |
| !! | TCATTCCTAATCTTTGGGAT+GGG | - | chr1_2:39169286-39169305 | Msa0069930:intron | 35.0% |
| !! | AGTGGACTGAACCTAATATT+AGG | + | chr1_2:39169322-39169341 | None:intergenic | 35.0% |
| CTATGCAAAGTATGTTTAGG+GGG | - | chr1_2:39169420-39169439 | Msa0069930:intron | 35.0% | |
| GTATGTTTAGGGGGATAAAT+TGG | - | chr1_2:39169429-39169448 | Msa0069930:intron | 35.0% | |
| ATGTCACTCACTTGTTTATG+TGG | - | chr1_2:39169468-39169487 | Msa0069930:CDS | 35.0% | |
| ! | CAAAATGGATACATGATGGA+AGG | + | chr1_2:39169541-39169560 | None:intergenic | 35.0% |
| ACAGCAAAATGGATACATGA+TGG | + | chr1_2:39169545-39169564 | None:intergenic | 35.0% | |
| !!! | ACCATTTTGAAGTTTCCAAC+CGG | - | chr1_2:39169667-39169686 | Msa0069930:CDS | 35.0% |
| CATTCCCTTATTACATATGC+CGG | + | chr1_2:39169689-39169708 | None:intergenic | 35.0% | |
| ! | AAGAAAATGATGGGACATGG+AGG | + | chr1_2:39166270-39166289 | None:intergenic | 40.0% |
| ! | AGCAAGAAAATGATGGGACA+TGG | + | chr1_2:39166273-39166292 | None:intergenic | 40.0% |
| GAAGATTTCAGCACAACTTG+AGG | + | chr1_2:39166385-39166404 | None:intergenic | 40.0% | |
| CTATCACTGGCATGTTACAT+TGG | + | chr1_2:39166414-39166433 | None:intergenic | 40.0% | |
| AACATGCCAGTGATAGCATT+TGG | - | chr1_2:39166418-39166437 | Msa0069930:three_prime_UTR | 40.0% | |
| GCTCTTCAACTTGGTCTAAT+TGG | - | chr1_2:39166577-39166596 | Msa0069930:three_prime_UTR | 40.0% | |
| ! | GAGGTAAGACTTTTGCTTAC+TGG | + | chr1_2:39166690-39166709 | None:intergenic | 40.0% |
| GGTTGCTTAACATGTGTCTT+AGG | + | chr1_2:39166999-39167018 | None:intergenic | 40.0% | |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | + | chr1_2:39167127-39167146 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr1_2:39167128-39167147 | None:intergenic | 40.0% |
| AAGGCTAGATACTCCAAACT+TGG | + | chr1_2:39167847-39167866 | None:intergenic | 40.0% | |
| !! | TTGTTTGTTGGTTCTCTGGT+AGG | + | chr1_2:39168069-39168088 | None:intergenic | 40.0% |
| ! | TGGACCTTTATTTGATCCAC+TGG | - | chr1_2:39168237-39168256 | Msa0069930:intron | 40.0% |
| TTGGCCAGTGGATCAAATAA+AGG | + | chr1_2:39168244-39168263 | None:intergenic | 40.0% | |
| CACTCCTTTCAGATCAAATG+TGG | + | chr1_2:39168318-39168337 | None:intergenic | 40.0% | |
| CATTTGATCTGAAAGGAGTG+TGG | - | chr1_2:39168318-39168337 | Msa0069930:intron | 40.0% | |
| GCTGAATTCTAATTGGACGT+CGG | - | chr1_2:39168624-39168643 | Msa0069930:intron | 40.0% | |
| TCATCTCCACCTATATTTGG+TGG | + | chr1_2:39168700-39168719 | None:intergenic | 40.0% | |
| AACTTCATTACTACCCCAAC+TGG | + | chr1_2:39168813-39168832 | None:intergenic | 40.0% | |
| AAGCAAATTGCAGAGGAACA+TGG | - | chr1_2:39168851-39168870 | Msa0069930:intron | 40.0% | |
| CTTAGATGGTTGTATGAGCA+AGG | - | chr1_2:39169123-39169142 | Msa0069930:intron | 40.0% | |
| TAGATGGTTGTATGAGCAAG+GGG | - | chr1_2:39169125-39169144 | Msa0069930:intron | 40.0% | |
| GCAGAGAATGAAGCAAAACT+TGG | - | chr1_2:39169176-39169195 | Msa0069930:intron | 40.0% | |
| !! | CATTCCTAATCTTTGGGATG+GGG | - | chr1_2:39169287-39169306 | Msa0069930:intron | 40.0% |
| !! | GCTAAAGTGATGGATGATAG+TGG | + | chr1_2:39169340-39169359 | None:intergenic | 40.0% |
| TCCAACCGGCATATGTAATA+AGG | - | chr1_2:39169681-39169700 | Msa0069930:CDS | 40.0% | |
| CCAACCGGCATATGTAATAA+GGG | - | chr1_2:39169682-39169701 | Msa0069930:CDS | 40.0% | |
| CACTGGCATGTTACATTGGT+TGG | + | chr1_2:39166410-39166429 | None:intergenic | 45.0% | |
| GCCAGTGATAGCATTTGGTA+CGG | - | chr1_2:39166423-39166442 | Msa0069930:three_prime_UTR | 45.0% | |
| GCAGCTGTAACAAACAACGA+TGG | - | chr1_2:39166445-39166464 | Msa0069930:three_prime_UTR | 45.0% | |
| TATGGCTCAGAAGAGGCTTT+AGG | - | chr1_2:39166538-39166557 | Msa0069930:three_prime_UTR | 45.0% | |
| GTTAGTGACCCAAAGTTTGG+AGG | + | chr1_2:39166626-39166645 | None:intergenic | 45.0% | |
| AGAGCAGGAAGAACAAGATG+AGG | + | chr1_2:39166655-39166674 | None:intergenic | 45.0% | |
| ! | TGGAGTGATTTCTGAAGAGC+AGG | + | chr1_2:39166670-39166689 | None:intergenic | 45.0% |
| TTCCTTAACATGTGCCCTTG+AGG | - | chr1_2:39167110-39167129 | Msa0069930:intron | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | - | chr1_2:39167111-39167130 | Msa0069930:intron | 45.0% | |
| TACGGATACGTCTCCAAGTT+TGG | - | chr1_2:39167831-39167850 | Msa0069930:CDS | 45.0% | |
| TACGGCAATTCCCAATTTCC+CGG | + | chr1_2:39168278-39168297 | None:intergenic | 45.0% | |
| CTTACTTGATTGACCGAAGG+AGG | + | chr1_2:39168446-39168465 | None:intergenic | 45.0% | |
| TGGCTTACTTGATTGACCGA+AGG | + | chr1_2:39168449-39168468 | None:intergenic | 45.0% | |
| AGGTGGAGATGAATCCAGTT+TGG | - | chr1_2:39168708-39168727 | Msa0069930:intron | 45.0% | |
| AGCTTCTTCTGATGCCAAAC+TGG | + | chr1_2:39168725-39168744 | None:intergenic | 45.0% | |
| ! | TTCTCTCCTTTAGGAGCGAA+AGG | - | chr1_2:39168785-39168804 | Msa0069930:intron | 45.0% |
| ! | TCTCTCCTTTAGGAGCGAAA+GGG | - | chr1_2:39168786-39168805 | Msa0069930:intron | 45.0% |
| GTTTCCCCATCCCAAAGATT+AGG | + | chr1_2:39169294-39169313 | None:intergenic | 45.0% | |
| AATATCCCAATCCGGCTTCA+AGG | - | chr1_2:39169372-39169391 | Msa0069930:intron | 45.0% | |
| AGATTTGAGCACCTTGAAGC+CGG | + | chr1_2:39169386-39169405 | None:intergenic | 45.0% | |
| GCCGGTTGGAAACTTCAAAA+TGG | + | chr1_2:39169671-39169690 | None:intergenic | 45.0% | |
| CCCTTATTACATATGCCGGT+TGG | + | chr1_2:39169685-39169704 | None:intergenic | 45.0% | |
| !!! | TTTATTTTAAATTAAAATTG+AGG | - | chr1_2:39166898-39166917 | Msa0069930:CDS | 5.0% |
| GCCGTACCAAATGCTATCAC+TGG | + | chr1_2:39166427-39166446 | None:intergenic | 50.0% | |
| GAGAGGGAGATGCATCTCAT+AGG | - | chr1_2:39167944-39167963 | Msa0069930:intron | 50.0% | |
| TTTCCCGGCTTCACACTGAT+TGG | + | chr1_2:39168263-39168282 | None:intergenic | 50.0% | |
| TCAGTGTGAAGCCGGGAAAT+TGG | - | chr1_2:39168264-39168283 | Msa0069930:intron | 50.0% | |
| CAGTGTGAAGCCGGGAAATT+GGG | - | chr1_2:39168265-39168284 | Msa0069930:intron | 50.0% | |
| ! | GAAAGGAGTGTGGACAGCAA+TGG | - | chr1_2:39168328-39168347 | Msa0069930:intron | 50.0% |
| ! | CTCTCCTTTAGGAGCGAAAG+GGG | - | chr1_2:39168787-39168806 | Msa0069930:intron | 50.0% |
| GTATGAGCAAGGGGTGACTA+TGG | - | chr1_2:39169134-39169153 | Msa0069930:intron | 50.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | + | chr1_2:39167115-39167134 | None:intergenic | 55.0% |
| ! | GCTTCACACTGATTGGCCAG+TGG | + | chr1_2:39168256-39168275 | None:intergenic | 55.0% |
| CTGGCCAATCAGTGTGAAGC+CGG | - | chr1_2:39168256-39168275 | Msa0069930:intron | 55.0% | |
| TGGCCAATCAGTGTGAAGCC+GGG | - | chr1_2:39168257-39168276 | Msa0069930:intron | 55.0% | |
| GAGCACCTTGAAGCCGGATT+GGG | + | chr1_2:39169380-39169399 | None:intergenic | 55.0% | |
| TGAGCACCTTGAAGCCGGAT+TGG | + | chr1_2:39169381-39169400 | None:intergenic | 55.0% | |
| CTGGCCCCTTTCGCTCCTAA+AGG | + | chr1_2:39168794-39168813 | None:intergenic | 60.0% | |
| TAGGAGCGAAAGGGGCCAGT+TGG | - | chr1_2:39168795-39168814 | Msa0069930:intron | 60.0% | |
| AGGAGCGAAAGGGGCCAGTT+GGG | - | chr1_2:39168796-39168815 | Msa0069930:intron | 60.0% | |
| GGAGCGAAAGGGGCCAGTTG+GGG | - | chr1_2:39168797-39168816 | Msa0069930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 39166229 | 39169894 | 39166229 | ID=Msa0069930;Name=Msa0069930 |
| chr1_2 | mRNA | 39166229 | 39169894 | 39166229 | ID=Msa0069930-mRNA-1;Parent=Msa0069930;Name=Msa0069930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=135|1|1|1|1|1|4|577|316 |
| chr1_2 | exon | 39166229 | 39167006 | 39166229 | ID=Msa0069930-mRNA-1:exon:12176;Parent=Msa0069930-mRNA-1 |
| chr1_2 | exon | 39167234 | 39167413 | 39167234 | ID=Msa0069930-mRNA-1:exon:12175;Parent=Msa0069930-mRNA-1 |
| chr1_2 | exon | 39167663 | 39167906 | 39167663 | ID=Msa0069930-mRNA-1:exon:12174;Parent=Msa0069930-mRNA-1 |
| chr1_2 | exon | 39169434 | 39169894 | 39169434 | ID=Msa0069930-mRNA-1:exon:12173;Parent=Msa0069930-mRNA-1 |
| chr1_2 | five_prime_UTR | 39169760 | 39169894 | 39169760 | ID=Msa0069930-mRNA-1:five_prime_utr;Parent=Msa0069930-mRNA-1 |
| chr1_2 | CDS | 39169434 | 39169759 | 39169434 | ID=Msa0069930-mRNA-1:cds;Parent=Msa0069930-mRNA-1 |
| chr1_2 | CDS | 39167663 | 39167906 | 39167663 | ID=Msa0069930-mRNA-1:cds;Parent=Msa0069930-mRNA-1 |
| chr1_2 | CDS | 39167234 | 39167413 | 39167234 | ID=Msa0069930-mRNA-1:cds;Parent=Msa0069930-mRNA-1 |
| chr1_2 | CDS | 39166806 | 39167006 | 39166806 | ID=Msa0069930-mRNA-1:cds;Parent=Msa0069930-mRNA-1 |
| chr1_2 | three_prime_UTR | 39166229 | 39166805 | 39166229 | ID=Msa0069930-mRNA-1:three_prime_utr;Parent=Msa0069930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
