AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013780 MtrunA17_Chr1g0163311 95.455 528 24 0 1 528 1 528 0.0 1010
Msa0013780 MtrunA17_Chr4g0037661 56.806 551 198 8 1 528 1 534 0.0 591
Msa0013780 MtrunA17_Chr4g0023801 34.698 562 298 14 4 527 5 535 5.60e-96 301
Msa0013780 MtrunA17_Chr1g0199631 28.785 535 298 15 36 523 27 525 1.70e-52 187
Msa0013780 MtrunA17_Chr2g0303541 27.778 540 314 15 36 525 63 576 3.91e-52 187
Msa0013780 MtrunA17_Chr2g0279481 28.383 532 269 17 6 457 47 546 7.51e-51 184
Msa0013780 MtrunA17_Chr4g0050021 28.161 522 278 13 5 457 46 539 6.55e-50 182
Msa0013780 MtrunA17_Chr2g0320691 25.664 565 330 17 17 518 36 573 9.56e-50 181
Msa0013780 MtrunA17_Chr5g0401341 26.667 480 296 8 6 457 30 481 2.92e-47 174
Msa0013780 MtrunA17_Chr2g0285511 26.210 496 294 14 6 457 29 496 2.67e-46 171
Msa0013780 MtrunA17_Chr8g0374011 28.675 551 281 18 45 517 85 601 1.61e-45 169
Msa0013780 MtrunA17_Chr8g0382231 24.785 581 321 18 5 527 54 576 3.36e-43 162
Msa0013780 MtrunA17_Chr7g0245201 26.812 552 306 16 13 511 70 576 3.37e-42 160
Msa0013780 MtrunA17_Chr2g0280541 29.064 406 243 12 67 460 1 373 8.71e-41 152
Msa0013780 MtrunA17_Chr1g0181181 25.177 564 315 15 6 517 29 537 6.77e-40 152
Msa0013780 MtrunA17_Chr1g0195911 25.464 593 319 18 5 527 38 577 3.18e-39 151
Msa0013780 MtrunA17_Chr1g0191711 26.287 544 305 17 6 524 61 533 1.07e-37 145
Msa0013780 MtrunA17_Chr4g0010091 24.956 565 319 14 17 522 47 565 1.32e-37 146
Msa0013780 MtrunA17_Chr1g0150191 27.468 466 284 14 42 479 69 508 1.11e-36 144
Msa0013780 MtrunA17_Chr8g0367891 26.078 487 271 13 17 457 39 482 3.01e-36 142
Msa0013780 MtrunA17_Chr5g0401451 24.864 551 326 18 6 510 43 551 2.99e-35 139
Msa0013780 MtrunA17_Chr1g0207461 25.773 485 300 13 5 457 30 486 2.79e-34 137
Msa0013780 MtrunA17_Chr4g0053841 24.044 549 339 16 5 511 15 527 7.54e-33 132
Msa0013780 MtrunA17_Chr4g0003891 28.779 344 213 10 210 523 46 387 1.34e-32 129
Msa0013780 MtrunA17_Chr4g0076521 25.306 490 285 13 6 458 29 474 3.69e-32 130
Msa0013780 MtrunA17_Chr3g0108331 25.660 530 308 16 14 511 34 509 6.06e-32 129
Msa0013780 MtrunA17_Chr5g0432861 24.373 558 286 16 14 511 35 516 2.98e-31 127
Msa0013780 MtrunA17_Chr5g0412591 24.081 544 284 14 6 481 29 511 1.28e-30 125
Msa0013780 MtrunA17_Chr2g0332281 30.588 255 163 7 280 523 109 360 3.14e-29 119
Msa0013780 MtrunA17_Chr7g0268781 27.336 289 149 6 286 522 296 575 2.78e-26 113
Msa0013780 MtrunA17_Chr2g0290741 24.708 514 288 16 6 482 29 480 3.08e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013780 AT3G19850.1 42.908 557 258 13 1 520 1 534 2.94e-136 406
Msa0013780 AT1G50280.1 44.720 483 226 10 1 459 1 466 1.82e-121 367
Msa0013780 AT1G50280.2 46.065 432 201 8 43 459 19 433 8.20e-114 346
Msa0013780 AT3G22104.1 31.238 525 303 14 6 520 7 483 5.80e-71 235
Msa0013780 AT3G22104.4 30.531 452 265 12 72 520 3 408 6.41e-52 183
Msa0013780 AT3G22104.2 30.531 452 265 12 72 520 3 408 6.41e-52 183
Msa0013780 AT3G22104.3 30.531 452 265 12 72 520 3 408 6.41e-52 183
Msa0013780 AT3G08570.1 27.788 565 318 19 13 527 43 567 3.13e-51 185
Msa0013780 AT3G08660.1 28.029 553 312 16 9 527 39 539 3.79e-51 184
Msa0013780 AT1G30440.1 26.882 558 306 15 36 524 64 588 2.50e-49 181
Msa0013780 AT5G03250.1 26.678 566 332 16 6 523 29 559 7.67e-48 175
Msa0013780 AT3G08660.3 27.599 529 300 15 30 527 3 479 9.40e-48 174
Msa0013780 AT3G44820.1 24.357 583 350 15 6 522 26 583 1.42e-46 172
Msa0013780 AT5G66560.4 28.073 545 299 14 44 524 68 583 2.72e-46 171
Msa0013780 AT5G66560.3 28.073 545 299 14 44 524 78 593 2.75e-46 172
Msa0013780 AT5G66560.1 28.073 545 299 14 44 524 107 622 3.46e-46 172
Msa0013780 AT3G50840.1 27.971 547 332 12 6 528 19 527 1.16e-41 157
Msa0013780 AT5G13600.1 26.984 567 321 20 6 523 29 551 1.21e-40 155
Msa0013780 AT3G50840.2 27.916 523 316 11 30 528 6 491 3.18e-40 153
Msa0013780 AT3G50840.3 27.916 523 316 11 30 528 6 491 3.18e-40 153
Msa0013780 AT3G26490.1 26.839 503 291 14 6 457 29 505 3.45e-40 154
Msa0013780 AT3G26490.3 26.839 503 291 14 6 457 29 505 3.45e-40 154
Msa0013780 AT3G26490.4 26.839 503 291 14 6 457 29 505 3.45e-40 154
Msa0013780 AT5G48800.1 27.253 466 274 11 6 445 44 470 9.18e-40 153
Msa0013780 AT5G47800.3 28.257 499 262 18 6 459 29 476 1.41e-39 151
Msa0013780 AT5G47800.1 28.257 499 262 18 6 459 29 476 1.41e-39 151
Msa0013780 AT5G47800.4 28.257 499 262 18 6 459 29 476 1.41e-39 151
Msa0013780 AT5G47800.2 28.257 499 262 18 6 459 142 589 6.77e-39 151
Msa0013780 AT2G47860.1 25.517 580 322 20 6 522 40 572 1.60e-38 149
Msa0013780 AT2G47860.3 25.880 568 311 20 18 522 75 595 1.16e-37 147
Msa0013780 AT4G37590.1 26.448 518 314 11 5 496 29 505 1.18e-37 146
Msa0013780 AT4G31820.1 26.722 479 284 18 5 457 29 466 2.67e-36 142
Msa0013780 AT5G67440.2 27.854 438 259 12 42 457 35 437 5.30e-36 141
Msa0013780 AT5G67440.3 27.854 438 259 12 42 457 72 474 5.99e-36 141
Msa0013780 AT5G67440.1 27.854 438 259 12 42 457 72 474 5.99e-36 141
Msa0013780 AT4G31820.2 27.294 436 255 15 44 457 18 413 2.22e-35 139
Msa0013780 AT3G08660.2 28.271 428 228 13 9 408 39 415 3.20e-35 137
Msa0013780 AT5G03250.2 25.417 480 283 13 86 523 1 447 8.15e-35 137
Msa0013780 AT1G67900.5 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT1G67900.1 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT1G67900.3 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT1G67900.6 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT1G67900.2 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT1G67900.4 25.097 514 288 13 6 457 29 507 1.73e-34 138
Msa0013780 AT5G67385.1 26.844 488 284 15 6 460 28 475 1.77e-34 137
Msa0013780 AT2G23050.1 26.714 423 251 10 44 457 76 448 6.24e-34 134
Msa0013780 AT5G66560.2 29.825 399 220 11 44 408 107 479 7.06e-33 131
Msa0013780 AT5G67385.4 27.039 466 268 14 28 460 4 430 1.06e-32 132
Msa0013780 AT5G67385.5 27.039 466 268 14 28 460 4 430 1.06e-32 132
Msa0013780 AT5G67385.2 27.039 466 268 14 28 460 4 430 1.06e-32 132
Msa0013780 AT5G67385.3 27.039 466 268 14 28 460 4 430 1.06e-32 132
Msa0013780 AT2G14820.2 24.477 478 293 14 17 457 40 486 1.59e-32 132
Msa0013780 AT2G14820.1 24.477 478 293 14 17 457 40 486 1.59e-32 132
Msa0013780 AT2G30520.1 27.292 480 261 15 14 457 40 467 3.56e-31 127
Msa0013780 AT1G52770.1 29.740 269 171 6 272 523 111 378 1.98e-30 124
Msa0013780 AT3G49970.1 24.517 518 295 17 17 511 7 451 2.09e-30 124
Msa0013780 AT3G49970.2 24.517 518 295 17 17 511 7 451 2.09e-30 124
Msa0013780 AT2G30520.2 26.538 520 291 17 31 511 9 476 2.44e-30 125
Msa0013780 AT2G30520.3 26.538 520 291 17 31 511 9 476 2.44e-30 125
Msa0013780 AT5G64330.1 32.243 214 109 3 280 457 390 603 3.24e-29 122
Msa0013780 AT5G64330.1 27.547 265 151 10 6 254 55 294 2.18e-17 86.3
Msa0013780 AT5G64330.3 31.674 221 115 3 273 457 324 544 3.53e-29 122
Msa0013780 AT5G64330.3 27.132 258 148 9 13 254 2 235 3.69e-17 85.1
Msa0013780 AT5G64330.2 31.674 221 115 3 273 457 383 603 5.33e-29 121
Msa0013780 AT5G64330.2 27.547 265 151 10 6 254 55 294 1.37e-17 86.7
Msa0013780 AT3G03510.1 25.899 417 243 8 51 460 5 362 8.64e-27 113
Msa0013780 AT1G03010.1 27.881 269 148 5 302 524 316 584 1.85e-26 114
Msa0013780 AT1G03010.2 27.881 269 148 5 302 524 289 557 2.12e-26 113
Msa0013780 AT1G03010.3 27.881 269 148 5 302 524 315 583 2.32e-26 113
Msa0013780 AT3G15570.1 29.843 191 129 2 272 457 116 306 9.22e-25 107
Msa0013780 AT2G47860.5 25.946 370 214 10 209 522 89 454 1.01e-24 108
Msa0013780 AT2G47860.2 25.946 370 214 10 209 522 89 454 1.01e-24 108
Msa0013780 AT5G10250.2 33.146 178 107 1 282 447 313 490 1.34e-22 102
Msa0013780 AT2G23050.2 27.953 254 169 4 207 457 90 332 1.35e-22 99.8
Msa0013780 AT5G10250.1 33.735 166 107 1 282 447 313 475 3.12e-21 97.8
Msa0013780 AT5G17580.2 23.992 471 297 13 9 457 24 455 2.92e-20 94.7
Msa0013780 AT5G17580.1 23.840 474 300 13 9 460 9 443 3.05e-20 94.7
Msa0013780 AT5G48130.1 22.174 460 301 14 17 460 52 470 1.05e-19 93.2

Find 77 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAATAGCAATGGTATTT+TGG 0.155933 1_1:-21259867 Msa0013780:CDS
TGGAGGTATTCTTTGGTTCT+TGG 0.206030 1_1:+21258049 None:intergenic
AGAAACTTCTCAATAATCTT+TGG 0.264089 1_1:+21259599 None:intergenic
CAATCCTTGGAGGTATTCTT+TGG 0.272848 1_1:+21258042 None:intergenic
AGAGAATGCAATGGAGAGTT+AGG 0.298590 1_1:-21257866 Msa0013780:CDS
AGAACTTGTCATTCTTATCT+TGG 0.308310 1_1:+21257922 None:intergenic
GCAAACATTCAACAACTTCT+AGG 0.327136 1_1:+21259111 None:intergenic
TCAAGAAGATCTATACATTA+TGG 0.342273 1_1:+21257790 None:intergenic
GAGAAGTTTCTTAAGGGTAT+TGG 0.345182 1_1:-21259587 Msa0013780:CDS
GATTATTGAGAAGTTTCTTA+AGG 0.351773 1_1:-21259594 Msa0013780:CDS
GAATACATACCTCGTGTATA+AGG 0.360979 1_1:+21260335 None:intergenic
TTCTCCGAAGAAAATTGTTC+CGG 0.362858 1_1:-21259708 Msa0013780:CDS
TCATCCAATGATTGCATTTG+AGG 0.369616 1_1:-21258138 Msa0013780:CDS
ATTATTGAGAAGTTTCTTAA+GGG 0.372722 1_1:-21259593 Msa0013780:CDS
TTCTTGATGGAATCTATGAT+TGG 0.373129 1_1:-21259949 Msa0013780:CDS
CAAGCACAAACATTTCTTGA+TGG 0.375555 1_1:-21259962 Msa0013780:CDS
GATTTCCCTGGAGGACCATA+TGG 0.375612 1_1:-21260118 Msa0013780:CDS
CTCTCCTCAAATGCAATCAT+TGG 0.377995 1_1:+21258134 None:intergenic
TTTGCAAGGGATTGCTTTGA+TGG 0.383370 1_1:-21259083 Msa0013780:CDS
ACCTCCAAGGATTGCAATGC+TGG 0.392173 1_1:-21258033 Msa0013780:CDS
AAGCAATCCCTTGCAAAATC+AGG 0.395103 1_1:+21259089 None:intergenic
GCAATGGAGAGTTAGGGAAT+TGG 0.398547 1_1:-21257859 Msa0013780:CDS
TAAAGATTGTAGAAATGAAA+TGG 0.401095 1_1:-21259357 Msa0013780:CDS
ACTTCATTATTGACCCTAGT+TGG 0.404424 1_1:+21259672 None:intergenic
ATGGAATCTATGATTGGAAA+TGG 0.424156 1_1:-21259943 Msa0013780:CDS
CTCAAACCACCATACTTTGT+TGG 0.428792 1_1:+21259640 None:intergenic
AAGAACATTGGAAGCATTGA+TGG 0.429738 1_1:+21260051 None:intergenic
TTGTGTATTATTAGCAAAGT+TGG 0.430801 1_1:-21259834 Msa0013780:CDS
CAACAAAGTATGGTGGTTTG+AGG 0.437805 1_1:-21259639 Msa0013780:CDS
TCAAACCACCATACTTTGTT+GGG 0.438745 1_1:+21259641 None:intergenic
TCAAATCCATATGGTCCTCC+AGG 0.443640 1_1:+21260112 None:intergenic
TTGGATGATCTACTAGTTTG+TGG 0.458276 1_1:-21259299 Msa0013780:CDS
GAGATCTCAAGGTTCTGATC+AGG 0.459434 1_1:+21259140 None:intergenic
TTTCATATCAATGATTTCCC+TGG 0.460553 1_1:-21260130 Msa0013780:CDS
TTGCAAGGGATTGCTTTGAT+GGG 0.461233 1_1:-21259082 Msa0013780:CDS
CTCTCCATTGCATTCTCTCA+AGG 0.477243 1_1:+21257871 None:intergenic
AATGAAATGGAGAAATTGAT+TGG 0.478241 1_1:-21259344 Msa0013780:CDS
TTTCTTCGGAGAAGAAACTT+TGG 0.478743 1_1:+21259718 None:intergenic
ATTAGTGAGTATACTAGTCT+TGG 0.480817 1_1:-21259479 Msa0013780:CDS
AGTGCCAGCATTGCAATCCT+TGG 0.491207 1_1:+21258029 None:intergenic
CTAGGAATTTAGAGATCTCA+AGG 0.493304 1_1:+21259129 None:intergenic
AAAGCTAACTCAAATCCATA+TGG 0.495631 1_1:+21260103 None:intergenic
AGATATTGAAGATGAAGAAG+AGG 0.499263 1_1:+21259781 None:intergenic
AACTTCTCAATAATCTTTGG+TGG 0.499996 1_1:+21259602 None:intergenic
GAGAATGCAATGGAGAGTTA+GGG 0.504538 1_1:-21257865 Msa0013780:CDS
GATAAAGAGCACAAGAATGA+AGG 0.505168 1_1:+21260026 None:intergenic
ACTTGTCATTCTTATCTTGG+TGG 0.509052 1_1:+21257925 None:intergenic
TGCAAGGGATTGCTTTGATG+GGG 0.523601 1_1:-21259081 Msa0013780:CDS
CTTGGAGAAACAGCTGCTCA+TGG 0.524694 1_1:-21259461 Msa0013780:CDS
GTTCAGATGACAAAGTTCAA+TGG 0.525733 1_1:-21257813 Msa0013780:CDS
ATATTTCCTCATCATTAATG+TGG 0.530774 1_1:+21260359 None:intergenic
AGTTGGATCTCAGTGCAATC+CGG 0.533486 1_1:+21259689 None:intergenic
AAGATCTTTACAAACTTCAA+AGG 0.538764 1_1:+21258073 None:intergenic
AATGTTTGAGAAAGCAACAT+TGG 0.542686 1_1:-21259318 Msa0013780:CDS
GCCAGCATTGCAATCCTTGG+AGG 0.544239 1_1:+21258032 None:intergenic
ACTAGTTTGTGGACATGACA+TGG 0.547450 1_1:-21259288 Msa0013780:CDS
AGAATGAAGGATAAGAACAT+TGG 0.549842 1_1:+21260039 None:intergenic
GATTGCACTGAGATCCAACT+AGG 0.550627 1_1:-21259686 Msa0013780:CDS
TATACATATGCAAATAGCAA+TGG 0.564064 1_1:-21259875 Msa0013780:CDS
GGAATTGGAGAAATTATGCA+AGG 0.572806 1_1:-21257844 Msa0013780:CDS
CACCTCAAGATAGATGTCAA+TGG 0.575131 1_1:+21259049 None:intergenic
GAAATGGAGAAATTGATTGG+TGG 0.586984 1_1:-21259341 Msa0013780:CDS
GCAAATCCACATTAATGATG+AGG 0.595863 1_1:-21260365 Msa0013780:CDS
CATATCAATGATTTCCCTGG+AGG 0.597484 1_1:-21260127 Msa0013780:CDS
AGCCATTGACATCTATCTTG+AGG 0.600004 1_1:-21259051 Msa0013780:intron
AAGTTGATATCAAAATATTG+TGG 0.624188 1_1:-21260190 Msa0013780:CDS
TAAACCTTGAGAGAATGCAA+TGG 0.625017 1_1:-21257875 Msa0013780:CDS
TGGTACAAAATGATTTGTGA+AGG 0.625971 1_1:+21257945 None:intergenic
CAAATCCATATGGTCCTCCA+GGG 0.630503 1_1:+21260113 None:intergenic
TCATCAATTGCATAGTCACA+TGG 0.634585 1_1:+21257981 None:intergenic
CTAGTTTGTGGACATGACAT+GGG 0.637079 1_1:-21259287 Msa0013780:CDS
AGAACCAAAGAATACCTCCA+AGG 0.671864 1_1:-21258046 Msa0013780:CDS
GGTACAAAATGATTTGTGAA+GGG 0.674523 1_1:+21257946 None:intergenic
ATTGCACTGAGATCCAACTA+GGG 0.684610 1_1:-21259685 Msa0013780:CDS
GCTCATGGAGTCATAAATGT+TGG 0.685224 1_1:-21259446 Msa0013780:CDS
TCAATTGCATAGTCACATGG+TGG 0.690737 1_1:+21257984 None:intergenic
GGAAATATTCCTTATACACG+AGG 0.713652 1_1:-21260344 Msa0013780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTATCATATTCAAAT+TGG - chr1_1:21259251-21259270 Msa0013780:CDS 15.0%
!!! AAATATTAGACTTTTTACAT+AGG - chr1_1:21259792-21259811 Msa0013780:CDS 15.0%
!!! AAGTTGATATCAAAATATTG+TGG - chr1_1:21257995-21258014 Msa0013780:CDS 20.0%
!!! TTGAAATTTTGTTACAACAA+TGG - chr1_1:21258103-21258122 Msa0013780:CDS 20.0%
!! ATTATTGAGAAGTTTCTTAA+GGG - chr1_1:21258592-21258611 Msa0013780:intron 20.0%
!! TAAAGATTGTAGAAATGAAA+TGG - chr1_1:21258828-21258847 Msa0013780:intron 20.0%
!!! TTATTATGATGTTAGTTTTG+TGG - chr1_1:21258924-21258943 Msa0013780:intron 20.0%
!! AGAAAGATAATAATGCATAA+AGG + chr1_1:21259191-21259210 None:intergenic 20.0%
!!! GATAGAATTTTAACCATTTA+AGG - chr1_1:21259378-21259397 Msa0013780:CDS 20.0%
!! AAAAAGAAATCATCCTTAAA+TGG + chr1_1:21259394-21259413 None:intergenic 20.0%
!! TTAAATAGCATTGTTCTTTA+AGG - chr1_1:21259583-21259602 Msa0013780:CDS 20.0%
!!! TTTTTACATAGGACAAAATT+TGG - chr1_1:21259803-21259822 Msa0013780:CDS 20.0%
! ATATTTCCTCATCATTAATG+TGG + chr1_1:21257829-21257848 None:intergenic 25.0%
! TGAAGATGAATATATGTCTA+AGG - chr1_1:21257947-21257966 Msa0013780:CDS 25.0%
! TATACATATGCAAATAGCAA+TGG - chr1_1:21258310-21258329 Msa0013780:intron 25.0%
! TTGTGTATTATTAGCAAAGT+TGG - chr1_1:21258351-21258370 Msa0013780:intron 25.0%
! AGAAACTTCTCAATAATCTT+TGG + chr1_1:21258589-21258608 None:intergenic 25.0%
! GATTATTGAGAAGTTTCTTA+AGG - chr1_1:21258591-21258610 Msa0013780:intron 25.0%
! AATGAAATGGAGAAATTGAT+TGG - chr1_1:21258841-21258860 Msa0013780:intron 25.0%
! GAGAAAATGAAAAAAGTTAG+TGG - chr1_1:21258991-21259010 Msa0013780:intron 25.0%
!! CTTTTCAAACAAATTTGACA+TGG - chr1_1:21259495-21259514 Msa0013780:CDS 25.0%
!! AAGAACAATGCTATTTAACA+TGG + chr1_1:21259581-21259600 None:intergenic 25.0%
!! TCAAAATTAGACTTTTGCTT+TGG - chr1_1:21259769-21259788 Msa0013780:CDS 25.0%
! CACAACAAAAATAGAAGATA+AGG - chr1_1:21259877-21259896 Msa0013780:CDS 25.0%
! AAGATCTTTACAAACTTCAA+AGG + chr1_1:21260115-21260134 None:intergenic 25.0%
TTTCATATCAATGATTTCCC+TGG - chr1_1:21258055-21258074 Msa0013780:CDS 30.0%
AAAGCTAACTCAAATCCATA+TGG + chr1_1:21258085-21258104 None:intergenic 30.0%
AGAATGAAGGATAAGAACAT+TGG + chr1_1:21258149-21258168 None:intergenic 30.0%
TTCTTGATGGAATCTATGAT+TGG - chr1_1:21258236-21258255 Msa0013780:intron 30.0%
ATGGAATCTATGATTGGAAA+TGG - chr1_1:21258242-21258261 Msa0013780:intron 30.0%
! TGCAAATAGCAATGGTATTT+TGG - chr1_1:21258318-21258337 Msa0013780:intron 30.0%
AGATATTGAAGATGAAGAAG+AGG + chr1_1:21258407-21258426 None:intergenic 30.0%
!! TTCTTCGCGAAATTACTTTT+AGG + chr1_1:21258433-21258452 None:intergenic 30.0%
AACTTCTCAATAATCTTTGG+TGG + chr1_1:21258586-21258605 None:intergenic 30.0%
! TCACTAATACTTTTGCAATG+TGG + chr1_1:21258694-21258713 None:intergenic 30.0%
! ATTAGTGAGTATACTAGTCT+TGG - chr1_1:21258706-21258725 Msa0013780:intron 30.0%
! GACAAGAATTTTTCATGTAG+AGG - chr1_1:21258763-21258782 Msa0013780:intron 30.0%
! CTGAGGATTTTATCAAAGTT+TGG - chr1_1:21258799-21258818 Msa0013780:intron 30.0%
AATGTTTGAGAAAGCAACAT+TGG - chr1_1:21258867-21258886 Msa0013780:intron 30.0%
!!! ATGATGTTAGTTTTGTGGTA+AGG - chr1_1:21258929-21258948 Msa0013780:intron 30.0%
! TTGAAATCATTGGTTGAGTA+CGG + chr1_1:21259312-21259331 None:intergenic 30.0%
! TTCACATGCTATAAACCTTT+TGG - chr1_1:21259346-21259365 Msa0013780:CDS 30.0%
TCTATCATTCTCTATCCAAA+AGG + chr1_1:21259364-21259383 None:intergenic 30.0%
ATTGCATGAAAGATTGTGAT+TGG - chr1_1:21259440-21259459 Msa0013780:CDS 30.0%
TTGCATGAAAGATTGTGATT+GGG - chr1_1:21259441-21259460 Msa0013780:CDS 30.0%
CAAAAATAAGTGCAAAAGGA+GGG + chr1_1:21259546-21259565 None:intergenic 30.0%
ACAAAAATAAGTGCAAAAGG+AGG + chr1_1:21259547-21259566 None:intergenic 30.0%
GTCACAAAAATAAGTGCAAA+AGG + chr1_1:21259550-21259569 None:intergenic 30.0%
ATAAAATTGTCATGCATGAG+TGG - chr1_1:21259715-21259734 Msa0013780:CDS 30.0%
ATAGTAATGATATTGACACC+TGG + chr1_1:21259941-21259960 None:intergenic 30.0%
AGTCAAAAGCTTATGACATT+TGG + chr1_1:21259976-21259995 None:intergenic 30.0%
! GAGTGACTTTAAGAGAATAT+TGG + chr1_1:21260000-21260019 None:intergenic 30.0%
! GGTACAAAATGATTTGTGAA+GGG + chr1_1:21260242-21260261 None:intergenic 30.0%
! TGGTACAAAATGATTTGTGA+AGG + chr1_1:21260243-21260262 None:intergenic 30.0%
AGAACTTGTCATTCTTATCT+TGG + chr1_1:21260266-21260285 None:intergenic 30.0%
GCAAATCCACATTAATGATG+AGG - chr1_1:21257820-21257839 Msa0013780:CDS 35.0%
GGAAATATTCCTTATACACG+AGG - chr1_1:21257841-21257860 Msa0013780:CDS 35.0%
GAATACATACCTCGTGTATA+AGG + chr1_1:21257853-21257872 None:intergenic 35.0%
TACACGAGGTATGTATTCTA+AGG - chr1_1:21257855-21257874 Msa0013780:CDS 35.0%
!! AAGAACATTGGAAGCATTGA+TGG + chr1_1:21258137-21258156 None:intergenic 35.0%
! GATAAAGAGCACAAGAATGA+AGG + chr1_1:21258162-21258181 None:intergenic 35.0%
CAAGCACAAACATTTCTTGA+TGG - chr1_1:21258223-21258242 Msa0013780:intron 35.0%
TTTCTTCGGAGAAGAAACTT+TGG + chr1_1:21258470-21258489 None:intergenic 35.0%
TTCTCCGAAGAAAATTGTTC+CGG - chr1_1:21258477-21258496 Msa0013780:intron 35.0%
! CAATCCGGAACAATTTTCTT+CGG + chr1_1:21258484-21258503 None:intergenic 35.0%
ACTTCATTATTGACCCTAGT+TGG + chr1_1:21258516-21258535 None:intergenic 35.0%
! CAAGTTTTCCCAACAAAGTA+TGG - chr1_1:21258536-21258555 Msa0013780:intron 35.0%
TCAAACCACCATACTTTGTT+GGG + chr1_1:21258547-21258566 None:intergenic 35.0%
! GAGAAGTTTCTTAAGGGTAT+TGG - chr1_1:21258598-21258617 Msa0013780:intron 35.0%
GAAATGGAGAAATTGATTGG+TGG - chr1_1:21258844-21258863 Msa0013780:intron 35.0%
! TTGGATGATCTACTAGTTTG+TGG - chr1_1:21258886-21258905 Msa0013780:intron 35.0%
CTAGGAATTTAGAGATCTCA+AGG + chr1_1:21259059-21259078 None:intergenic 35.0%
GCAAACATTCAACAACTTCT+AGG + chr1_1:21259077-21259096 None:intergenic 35.0%
! AATGTTTGCCTGATTTTGCA+AGG - chr1_1:21259088-21259107 Msa0013780:CDS 35.0%
! ATGTTTGCCTGATTTTGCAA+GGG - chr1_1:21259089-21259108 Msa0013780:CDS 35.0%
AAGTTATTGAGCTCTCAAAG+AGG + chr1_1:21259284-21259303 None:intergenic 35.0%
CATAAGAGGGTTGAAATCAT+TGG + chr1_1:21259322-21259341 None:intergenic 35.0%
GCATGTGAATGATCATAAGA+GGG + chr1_1:21259335-21259354 None:intergenic 35.0%
AGCATGTGAATGATCATAAG+AGG + chr1_1:21259336-21259355 None:intergenic 35.0%
TGCATGAAAGATTGTGATTG+GGG - chr1_1:21259442-21259461 Msa0013780:CDS 35.0%
ACATGGTACAATACCATGTA+TGG - chr1_1:21259512-21259531 Msa0013780:CDS 35.0%
TGGTTATAGCTATTTGACAG+TGG - chr1_1:21259735-21259754 Msa0013780:CDS 35.0%
TCATCCAATGATTGCATTTG+AGG - chr1_1:21260047-21260066 Msa0013780:CDS 35.0%
TCATCAATTGCATAGTCACA+TGG + chr1_1:21260207-21260226 None:intergenic 35.0%
ACTTGTCATTCTTATCTTGG+TGG + chr1_1:21260263-21260282 None:intergenic 35.0%
TAAACCTTGAGAGAATGCAA+TGG - chr1_1:21260310-21260329 Msa0013780:intron 35.0%
GGAATTGGAGAAATTATGCA+AGG - chr1_1:21260341-21260360 Msa0013780:intron 35.0%
GTTCAGATGACAAAGTTCAA+TGG - chr1_1:21260372-21260391 Msa0013780:CDS 35.0%
CATATCAATGATTTCCCTGG+AGG - chr1_1:21258058-21258077 Msa0013780:CDS 40.0%
ATTGCACTGAGATCCAACTA+GGG - chr1_1:21258500-21258519 Msa0013780:intron 40.0%
! GTTTTCCCAACAAAGTATGG+TGG - chr1_1:21258539-21258558 Msa0013780:intron 40.0%
CTCAAACCACCATACTTTGT+TGG + chr1_1:21258548-21258567 None:intergenic 40.0%
CAACAAAGTATGGTGGTTTG+AGG - chr1_1:21258546-21258565 Msa0013780:intron 40.0%
GCTCATGGAGTCATAAATGT+TGG - chr1_1:21258739-21258758 Msa0013780:intron 40.0%
! ACTAGTTTGTGGACATGACA+TGG - chr1_1:21258897-21258916 Msa0013780:intron 40.0%
! CTAGTTTGTGGACATGACAT+GGG - chr1_1:21258898-21258917 Msa0013780:intron 40.0%
AAGCAATCCCTTGCAAAATC+AGG + chr1_1:21259099-21259118 None:intergenic 40.0%
TTTGCAAGGGATTGCTTTGA+TGG - chr1_1:21259102-21259121 Msa0013780:CDS 40.0%
TTGCAAGGGATTGCTTTGAT+GGG - chr1_1:21259103-21259122 Msa0013780:CDS 40.0%
AGCCATTGACATCTATCTTG+AGG - chr1_1:21259134-21259153 Msa0013780:CDS 40.0%
CACCTCAAGATAGATGTCAA+TGG + chr1_1:21259139-21259158 None:intergenic 40.0%
! GATTGTGATTGGGGAAGTAT+AGG - chr1_1:21259451-21259470 Msa0013780:CDS 40.0%
!! CTTTAAGGTTCCATCATGCT+TGG - chr1_1:21259598-21259617 Msa0013780:CDS 40.0%
AATGCCATAACCAAGCATGA+TGG + chr1_1:21259611-21259630 None:intergenic 40.0%
TGCTTGGTTATGGCATTATG+TGG - chr1_1:21259614-21259633 Msa0013780:CDS 40.0%
GCTTCATTACCAACTAGACA+GGG + chr1_1:21259910-21259929 None:intergenic 40.0%
AGCTTCATTACCAACTAGAC+AGG + chr1_1:21259911-21259930 None:intergenic 40.0%
GTAATGAAGCTTTACTTGCC+AGG - chr1_1:21259920-21259939 Msa0013780:CDS 40.0%
GGATGAGACTGCAAATTCAT+TGG + chr1_1:21260033-21260052 None:intergenic 40.0%
CTCTCCTCAAATGCAATCAT+TGG + chr1_1:21260054-21260073 None:intergenic 40.0%
!! TGGAGGTATTCTTTGGTTCT+TGG + chr1_1:21260139-21260158 None:intergenic 40.0%
AGAACCAAAGAATACCTCCA+AGG - chr1_1:21260139-21260158 Msa0013780:CDS 40.0%
!! CAATCCTTGGAGGTATTCTT+TGG + chr1_1:21260146-21260165 None:intergenic 40.0%
TCAATTGCATAGTCACATGG+TGG + chr1_1:21260204-21260223 None:intergenic 40.0%
AGAGAATGCAATGGAGAGTT+AGG - chr1_1:21260319-21260338 Msa0013780:intron 40.0%
GAGAATGCAATGGAGAGTTA+GGG - chr1_1:21260320-21260339 Msa0013780:intron 40.0%
CAAATCCATATGGTCCTCCA+GGG + chr1_1:21258075-21258094 None:intergenic 45.0%
TCAAATCCATATGGTCCTCC+AGG + chr1_1:21258076-21258095 None:intergenic 45.0%
AGTTGGATCTCAGTGCAATC+CGG + chr1_1:21258499-21258518 None:intergenic 45.0%
GATTGCACTGAGATCCAACT+AGG - chr1_1:21258499-21258518 Msa0013780:intron 45.0%
!!! GAGGTCTTTTTTGTGTGCTG+AGG - chr1_1:21258782-21258801 Msa0013780:intron 45.0%
! GAGATCTCAAGGTTCTGATC+AGG + chr1_1:21259048-21259067 None:intergenic 45.0%
TGCAAGGGATTGCTTTGATG+GGG - chr1_1:21259104-21259123 Msa0013780:CDS 45.0%
GAGGGATGTAACACCATACA+TGG + chr1_1:21259528-21259547 None:intergenic 45.0%
GGTTCCATCATGCTTGGTTA+TGG - chr1_1:21259604-21259623 Msa0013780:CDS 45.0%
GGTAAATTGCCCTGTCTAGT+TGG - chr1_1:21259898-21259917 Msa0013780:CDS 45.0%
CTCTCCATTGCATTCTCTCA+AGG + chr1_1:21260317-21260336 None:intergenic 45.0%
GCAATGGAGAGTTAGGGAAT+TGG - chr1_1:21260326-21260345 Msa0013780:intron 45.0%
GATTTCCCTGGAGGACCATA+TGG - chr1_1:21258067-21258086 Msa0013780:CDS 50.0%
CTTGGAGAAACAGCTGCTCA+TGG - chr1_1:21258724-21258743 Msa0013780:intron 50.0%
ACCTCCAAGGATTGCAATGC+TGG - chr1_1:21260152-21260171 Msa0013780:CDS 50.0%
AGTGCCAGCATTGCAATCCT+TGG + chr1_1:21260159-21260178 None:intergenic 50.0%
GCCAGCATTGCAATCCTTGG+AGG + chr1_1:21260156-21260175 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 21257800 21260407 21257800 ID=Msa0013780;Name=Msa0013780
chr1_1 mRNA 21257800 21260407 21257800 ID=Msa0013780-mRNA-1;Parent=Msa0013780;Name=Msa0013780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|528
chr1_1 exon 21260345 21260407 21260345 ID=Msa0013780-mRNA-1:exon:7586;Parent=Msa0013780-mRNA-1
chr1_1 exon 21259052 21260212 21259052 ID=Msa0013780-mRNA-1:exon:7585;Parent=Msa0013780-mRNA-1
chr1_1 exon 21257800 21258162 21257800 ID=Msa0013780-mRNA-1:exon:7584;Parent=Msa0013780-mRNA-1
chr1_1 CDS 21260345 21260407 21260345 ID=Msa0013780-mRNA-1:cds;Parent=Msa0013780-mRNA-1
chr1_1 CDS 21259052 21260212 21259052 ID=Msa0013780-mRNA-1:cds;Parent=Msa0013780-mRNA-1
chr1_1 CDS 21257800 21258162 21257800 ID=Msa0013780-mRNA-1:cds;Parent=Msa0013780-mRNA-1
Gene Sequence

>Msa0013780

ATGTCAAAATTCTGTGACATGCAAATCCACATTAATGATGAGGAAATATTCCTTATACACGAGAAGTTGATATCAAAATATTGTGGAAAATTGAAGAAAATGTTAAATGAAGAAAAGAGAATATTTCATATCAATGATTTCCCTGGAGGACCATATGGATTTGAGTTAGCTTTGAAATTTTGTTACAACAATGGCAAAATCACCATCAATGCTTCCAATGTTCTTATCCTTCATTCTTGTGCTCTTTATCTTGAAATGAGTGAAGAAGTTTCTAGCAACAATCTCTTGCAACAAGCACAAACATTTCTTGATGGAATCTATGATTGGAAATGGAATGAAATAATAGTAAGTCTTAAGTGTTGTGAATGTGAGAAATTTTATACATATGCAAATAGCAATGGTATTTTGGAGAAGATTATTTGTGTATTATTAGCAAAGTTGGTTCAAAATTCTGATTTCAATTTCATCACTTCCTCTTCTTCATCTTCAATATCTTCTCCTAAAAGTAATTTCGCGAAGAAACTCTCTTTTTCGACCAAAGTTTCTTCTCCGAAGAAAATTGTTCCGGATTGCACTGAGATCCAACTAGGGTCAATAATGAAGTCAAGTTTTCCCAACAAAGTATGGTGGTTTGAGGATTTGTCTACTTTACCACCAAAGATTATTGAGAAGTTTCTTAAGGGTATTGGAGCTTATAAAAGTGATAATAAAAATTTAATTGTCACAAGATTTCTACTTTATTATATGAAAAAAATTACTCCACATTGCAAAAGTATTAGTGAGTATACTAGTCTTGGAGAAACAGCTGCTCATGGAGTCATAAATGTTGGTGACAAGAATTTTTCATGTAGAGGTCTTTTTTGTGTGCTGAGGATTTTATCAAAGTTTGGAATAAGTAAAGATTGTAGAAATGAAATGGAGAAATTGATTGGTGGAATGTTTGAGAAAGCAACATTGGATGATCTACTAGTTTGTGGACATGACATGGGACTTTATTATGATGTTAGTTTTGTGGTAAGGTTGATTAAAGTATTTGTTAGTATCAATGAAAATGATGTAGAGAAAATGAAAAAAGTTAGTGGATTAATTGACAAGTATTTGATAGAGATATCTCCTGATCAGAACCTTGAGATCTCTAAATTCCTAGAAGTTGTTGAATGTTTGCCTGATTTTGCAAGGGATTGCTTTGATGGGGTCTATAGAGCCATTGACATCTATCTTGAGTCTCATCCAATGATTGCATTTGAGGAGAGTTCAAGATTGTGTAGATGTCTTAATTACAATAAACTGACCTTTGAAGTTTGTAAAGATCTTGCCAAGAACCAAAGAATACCTCCAAGGATTGCAATGCTGGCACTAATGTCTCAACAAAAAAATGTTCCACCATGTGACTATGCAATTGATGAAAGTGAAATGAGCCCTTCACAAATCATTTTGTACCACCAAGATAAGAATGACAAGTTCTTTGAAGATAAAGAAGATATGAGAATAAACCTTGAGAGAATGCAATGGAGAGTTAGGGAATTGGAGAAATTATGCAAGGAAATGAAAGTTCAGATGACAAAGTTCAATGGCCATAATGTATAG
Protein sequence

>Msa0013780

MSKFCDMQIHINDEEIFLIHEKLISKYCGKLKKMLNEEKRIFHINDFPGGPYGFELALKFCYNNGKITINASNVLILHSCALYLEMSEEVSSNNLLQQAQTFLDGIYDWKWNEIIVSLKCCECEKFYTYANSNGILEKIICVLLAKLVQNSDFNFITSSSSSSISSPKSNFAKKLSFSTKVSSPKKIVPDCTEIQLGSIMKSSFPNKVWWFEDLSTLPPKIIEKFLKGIGAYKSDNKNLIVTRFLLYYMKKITPHCKSISEYTSLGETAAHGVINVGDKNFSCRGLFCVLRILSKFGISKDCRNEMEKLIGGMFEKATLDDLLVCGHDMGLYYDVSFVVRLIKVFVSINENDVEKMKKVSGLIDKYLIEISPDQNLEISKFLEVVECLPDFARDCFDGVYRAIDIYLESHPMIAFEESSRLCRCLNYNKLTFEVCKDLAKNQRIPPRIAMLALMSQQKNVPPCDYAIDESEMSPSQIILYHQDKNDKFFEDKEDMRINLERMQWRVRELEKLCKEMKVQMTKFNGHNV*