AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035120 MtrunA17_Chr1g0197401 68.306 183 5 1 16 145 324 506 2.90e-73 227
Msa0035120 MtrunA17_Chr7g0272641 44.595 74 39 1 69 142 584 655 2.15e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035120 AT5G04420.2 41.808 177 48 3 18 141 339 513 1.07e-23 95.9
Msa0035120 AT5G04420.1 41.808 177 48 3 18 141 339 513 1.07e-23 95.9
Msa0035120 AT5G04420.3 41.808 177 48 3 18 141 339 513 1.07e-23 95.9
Msa0035120 AT3G05420.2 44.595 74 38 1 69 142 589 659 5.84e-14 68.2
Msa0035120 AT3G05420.1 44.595 74 38 1 69 142 588 658 5.95e-14 68.2
Msa0035120 AT5G27630.3 44.595 74 40 1 69 142 590 662 3.66e-13 65.9
Msa0035120 AT5G27630.1 44.595 74 40 1 69 142 570 642 3.71e-13 65.9
Msa0035120 AT5G27630.4 44.595 74 40 1 69 142 576 648 3.79e-13 65.9

Find 138 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTTACATATGATAAT+TGG 0.170068 1_1:-63162999 Msa0035120:five_prime_UTR
TTTCCTTGCTACAGAGCTTT+TGG 0.190135 1_1:-63157085 Msa0035120:three_prime_UTR
AATGCCACTTAAAGTGATTT+TGG 0.238001 1_1:-63157185 Msa0035120:three_prime_UTR
ATGTTTAAGACCAGGGTTTC+AGG 0.262450 1_1:+63159593 None:intergenic
TTTGGAGTTATTAAGACTTC+TGG 0.268335 1_1:-63162011 Msa0035120:five_prime_UTR
GAAACATATCTGTTTGCTTT+TGG 0.282847 1_1:-63158831 Msa0035120:CDS
AATATACATACTTAAATATA+TGG 0.288747 1_1:+63156908 None:intergenic
AGTTCTCTCTCTCCGGTAAC+AGG 0.299705 1_1:-63163745 Msa0035120:intron
TGGGTACCTATTACTGTAAC+TGG 0.320335 1_1:-63162979 Msa0035120:five_prime_UTR
TCACAGTTTGCAAGTCTAAT+AGG 0.321039 1_1:+63161292 None:intergenic
GACACTTCTGATACTTTAAC+AGG 0.331485 1_1:-63162251 Msa0035120:intron
CGTGCACCAGTTACAGTAAT+AGG 0.336930 1_1:+63162973 None:intergenic
CAAAACTGACCAAACAAGTT+TGG 0.344354 1_1:+63159568 None:intergenic
GGCAGAGTTCTGGTGGAGTT+TGG 0.359921 1_1:-63157248 Msa0035120:CDS
GACATTGAAACATGCCAGTT+TGG 0.363748 1_1:-63162029 Msa0035120:five_prime_UTR
TAAACATGTCCAAACTTGTT+TGG 0.371790 1_1:-63159577 Msa0035120:five_prime_UTR
TGCCACATCTGGTCACAATA+TGG 0.375410 1_1:-63162462 Msa0035120:intron
CGCAAAGTGTCCTTTGCCTT+GGG 0.375746 1_1:+63157905 None:intergenic
GAGTTTGGCGATTGTTTGGT+GGG 0.378516 1_1:-63157233 Msa0035120:CDS
GAAGTTGGATTTCATGCAAC+TGG 0.379660 1_1:-63157804 Msa0035120:CDS
TAAGACTTCTGGAAGTGTTC+CGG 0.385440 1_1:-63162000 Msa0035120:intron
CTAAAGCTAAAAGCTGATAC+TGG 0.386047 1_1:-63162521 Msa0035120:five_prime_UTR
GGGGAGAAACTACTTATTCT+TGG 0.386469 1_1:-63162287 Msa0035120:five_prime_UTR
TTATTCTTGGTGGCAGTTCA+AGG 0.395862 1_1:-63162274 Msa0035120:five_prime_UTR
GCTGATACTGGAAAAGATAA+TGG 0.398474 1_1:-63162509 Msa0035120:five_prime_UTR
CGGCTGCAGCAGCCGGTGAC+TGG 0.402128 1_1:+63157870 None:intergenic
TCGGCATTTATCGGATGTTC+AGG 0.402211 1_1:-63162648 Msa0035120:intron
GCTGCAGCGGCTGCAGCAGC+CGG 0.404210 1_1:+63157863 None:intergenic
ATGTTGAGCTCCAATCTTGA+TGG 0.404803 1_1:-63157030 Msa0035120:three_prime_UTR
TATTGTTTGCTGGTGAAGAT+AGG 0.410603 1_1:-63161584 Msa0035120:five_prime_UTR
ACTGCTCAGAGGCAGAGTTC+TGG 0.411453 1_1:-63157258 Msa0035120:CDS
TCGTAATGGTCGGCATTTAT+CGG 0.414181 1_1:-63162657 Msa0035120:five_prime_UTR
GAGAATCTGCCTGCCACATC+TGG 0.415971 1_1:-63162473 Msa0035120:five_prime_UTR
ACGCAAAGTGTCCTTTGCCT+TGG 0.417692 1_1:+63157904 None:intergenic
TCAAGAGTTATATTGTTTGC+TGG 0.420352 1_1:-63161594 Msa0035120:five_prime_UTR
ACGCCCACCTGCTCGCTATA+AGG 0.422960 1_1:-63162953 Msa0035120:intron
AGCCGGTGACTGGAAAATCT+TGG 0.427490 1_1:+63157880 None:intergenic
CGTACTGCAACAGGTATTCC+TGG 0.431125 1_1:-63163066 Msa0035120:five_prime_UTR
AAGGTGATCCGTACTGCAAC+AGG 0.436476 1_1:-63163075 Msa0035120:five_prime_UTR
TTGCAGCGTGCTCCATCTCC+TGG 0.437877 1_1:+63157280 None:intergenic
AAAGGAGAATCAGAGAGAAA+TGG 0.438995 1_1:-63163040 Msa0035120:five_prime_UTR
ATCACCTTGATTGTCACTTC+AGG 0.439632 1_1:+63163090 None:intergenic
GAGAAATGGAAGTCAACAAT+TGG 0.443435 1_1:-63163026 Msa0035120:five_prime_UTR
CAAGTTGTCCCTGGACTGAT+TGG 0.447114 1_1:+63157513 None:intergenic
GGTGGAGTTTGGCGATTGTT+TGG 0.453020 1_1:-63157237 Msa0035120:CDS
AGAACTTACATATGATAATT+GGG 0.453526 1_1:-63162998 Msa0035120:five_prime_UTR
AACTCCAAAATCACTTTAAG+TGG 0.454233 1_1:+63157181 None:intergenic
AATGCAGTCTGTGGAAGATC+AGG 0.457540 1_1:-63157337 Msa0035120:CDS
GCAGCTGCATGATCATATCT+AGG 0.458106 1_1:+63161384 None:intergenic
GATTGAATGAAACCTGTTAC+CGG 0.460589 1_1:+63163733 None:intergenic
AAGTCTTAATAACTCCAAAC+TGG 0.461734 1_1:+63162015 None:intergenic
GGACTGCAACTTTCAAAAGA+TGG 0.466258 1_1:-63157009 Msa0035120:three_prime_UTR
ATTGTCTAAATCTGAGAAGT+TGG 0.468518 1_1:-63157819 Msa0035120:CDS
GCCGGTGACTGGAAAATCTT+GGG 0.471683 1_1:+63157881 None:intergenic
TGTTTAAGACCAGGGTTTCA+GGG 0.480013 1_1:+63159594 None:intergenic
GTCTGCTCAGGACTGATTGA+TGG 0.482697 1_1:-63158855 Msa0035120:exon
AACAGGTTGCCCTGAAACCC+TGG 0.483820 1_1:-63159603 Msa0035120:intron
GATACCAGCATGTCCAGCCC+TGG 0.484536 1_1:+63160079 None:intergenic
AAGTTGCAGTCCATCAAGAT+TGG 0.485101 1_1:+63157020 None:intergenic
AACAGGTATTCCTGGACAAA+AGG 0.485327 1_1:-63163058 Msa0035120:five_prime_UTR
GGAAATTTCTGCAGATTAGG+TGG 0.485711 1_1:-63162310 Msa0035120:intron
CTCATTTGGTTCAGATGGAA+TGG 0.487551 1_1:-63160136 Msa0035120:intron
GTAATTACCTCGCTAGAAAG+TGG 0.490290 1_1:+63159524 None:intergenic
ATGACCATTTACAGATGACT+TGG 0.490751 1_1:+63157769 None:intergenic
AAGATCAGGTACAGGCTCTT+CGG 0.491991 1_1:-63157323 Msa0035120:CDS
TCTCCCAGGGCTGGACATGC+TGG 0.492069 1_1:-63160083 Msa0035120:five_prime_UTR
GAAATTTCTGCAGATTAGGT+GGG 0.494691 1_1:-63162309 Msa0035120:intron
GGAGTTTGGCGATTGTTTGG+TGG 0.494775 1_1:-63157234 Msa0035120:CDS
GATCATGCAGCTGCTATACA+TGG 0.499932 1_1:-63161375 Msa0035120:five_prime_UTR
AATCACCTTGAGATTGTGGT+TGG 0.503457 1_1:+63160111 None:intergenic
GGAGAGAGAGAACTCAGATC+TGG 0.504241 1_1:+63163754 None:intergenic
GTTTGGCGATTGTTTGGTGG+GGG 0.504587 1_1:-63157231 Msa0035120:CDS
TCAGGAACTCCAATCAGTCC+AGG 0.506726 1_1:-63157522 Msa0035120:intron
ACTAAATCACCTTGAGATTG+TGG 0.509422 1_1:+63160107 None:intergenic
TCTCTGCCACAAGTTGTCCC+TGG 0.512332 1_1:+63157504 None:intergenic
TATTCTTGGTGGCAGTTCAA+GGG 0.512969 1_1:-63162273 Msa0035120:five_prime_UTR
GCATGATCATATCTAGGAGC+TGG 0.514015 1_1:+63161390 None:intergenic
GTATCACTGTTGATGAAAGC+TGG 0.523869 1_1:-63160061 Msa0035120:five_prime_UTR
AGTTTGGCGATTGTTTGGTG+GGG 0.526991 1_1:-63157232 Msa0035120:CDS
TCGATCTTGAAAGTATGACT+TGG 0.528585 1_1:-63161530 Msa0035120:five_prime_UTR
GATGAAAGCTGGTTCATAGT+TGG 0.533217 1_1:-63160050 Msa0035120:five_prime_UTR
CAGGGTCTTAGTGTCTGCTC+AGG 0.535901 1_1:-63158867 Msa0035120:five_prime_UTR
AAATAAACCTTATAGCGAGC+AGG 0.536488 1_1:+63162946 None:intergenic
ATCACCTTGAGATTGTGGTT+GGG 0.539244 1_1:+63160112 None:intergenic
GAAACGGTGTCGTCGAAGAT+CGG 0.539806 1_1:+63163776 None:intergenic
GTCTGTGGAAGATCAGGTAC+AGG 0.541261 1_1:-63157331 Msa0035120:CDS
ATCAGTCCAGGGACAACTTG+TGG 0.541539 1_1:-63157510 Msa0035120:CDS
TGTGGGACAGTCTGCAACAC+TGG 0.541663 1_1:-63161622 Msa0035120:five_prime_UTR
CGATCTTGAAAGTATGACTT+GGG 0.542678 1_1:-63161529 Msa0035120:five_prime_UTR
AGATAATGGCAACAGTTCAC+AGG 0.549134 1_1:-63162495 Msa0035120:five_prime_UTR
AGATCTGAGTTCTCTCTCTC+CGG 0.550438 1_1:-63163752 Msa0035120:five_prime_UTR
TTGCTGGTGAAGATAGGAGA+AGG 0.550729 1_1:-63161578 Msa0035120:five_prime_UTR
GATTTAGTATCTCCCAGGGC+TGG 0.552233 1_1:-63160092 Msa0035120:five_prime_UTR
GCTCAGAGGCAGAGTTCTGG+TGG 0.555117 1_1:-63157255 Msa0035120:CDS
AAGGTGATTTAGTATCTCCC+AGG 0.560391 1_1:-63160097 Msa0035120:five_prime_UTR
TAAACCTTATAGCGAGCAGG+TGG 0.560664 1_1:+63162949 None:intergenic
TACCATATTGTGACCAGATG+TGG 0.565247 1_1:+63162460 None:intergenic
ATAGCCTGAAGTGACAATCA+AGG 0.566294 1_1:-63163094 Msa0035120:intron
AGAGAACTCAGATCTGGAAA+CGG 0.566938 1_1:+63163760 None:intergenic
CAGGAATACCTGTTGCAGTA+CGG 0.572254 1_1:+63163067 None:intergenic
GTTTGGACATGTTTAAGACC+AGG 0.574500 1_1:+63159585 None:intergenic
TCTTTAAGATGCTAGACTAG+AGG 0.577795 1_1:-63156837 Msa0035120:three_prime_UTR
TTTGGACATGTTTAAGACCA+GGG 0.578998 1_1:+63159586 None:intergenic
TACTTTCAAGATCGAGAACA+TGG 0.582402 1_1:+63161538 None:intergenic
GAGAAACTACTTATTCTTGG+TGG 0.583851 1_1:-63162284 Msa0035120:five_prime_UTR
CACCCAAAAGCTCTGTAGCA+AGG 0.585451 1_1:+63157082 None:intergenic
AAATTTCTGCAGATTAGGTG+GGG 0.587248 1_1:-63162308 Msa0035120:intron
GAGATCAAGATGCTTTAACC+TGG 0.590072 1_1:-63157483 Msa0035120:CDS
TGACCATTTACAGATGACTT+GGG 0.592947 1_1:+63157770 None:intergenic
ATACCAGCATGTCCAGCCCT+GGG 0.596393 1_1:+63160080 None:intergenic
GTGTTGCAGACTGTCCCACA+CGG 0.598021 1_1:+63161625 None:intergenic
AATTTCTGCAGATTAGGTGG+GGG 0.598354 1_1:-63162307 Msa0035120:intron
AGAAGAAACAGAAGCTGCAG+CGG 0.605486 1_1:+63157850 None:intergenic
AGCTGGTTCATAGTTGGTGG+TGG 0.606040 1_1:-63160044 Msa0035120:five_prime_UTR
CAGGAACTCCAATCAGTCCA+GGG 0.608949 1_1:-63157521 Msa0035120:CDS
AAAAGATCCACTTTCTAGCG+AGG 0.614138 1_1:-63159531 Msa0035120:intron
TCGGTGGAAGTCGTAATGGT+CGG 0.620312 1_1:-63162667 Msa0035120:five_prime_UTR
ATATTGTGACCAGATGTGGC+AGG 0.620813 1_1:+63162464 None:intergenic
GGACAGTCTGCAACACTGGT+TGG 0.620957 1_1:-63161618 Msa0035120:five_prime_UTR
AGCACGCTGCAACTGCTCAG+AGG 0.621810 1_1:-63157269 Msa0035120:CDS
ATTTCTGCAGATTAGGTGGG+GGG 0.621981 1_1:-63162306 Msa0035120:intron
TGATCATATCTAGGAGCTGG+AGG 0.627693 1_1:+63161393 None:intergenic
ATCAAGATGCTTTAACCTGG+AGG 0.628173 1_1:-63157480 Msa0035120:intron
TGGTCCCAACCACAATCTCA+AGG 0.633536 1_1:-63160116 Msa0035120:five_prime_UTR
CGGTGTCGTCGAAGATCGGA+CGG 0.639227 1_1:+63163780 None:intergenic
GAAAGCTGGTTCATAGTTGG+TGG 0.644690 1_1:-63160047 Msa0035120:five_prime_UTR
GTTGGAATCAATGCAGTCTG+TGG 0.657663 1_1:-63157346 Msa0035120:CDS
TTGACTTCAGAAGTTTGACG+TGG 0.660815 1_1:-63162550 Msa0035120:five_prime_UTR
CAATGGGAGGTATAGCAATG+AGG 0.666121 1_1:-63158802 Msa0035120:intron
AGGTGATTTAGTATCTCCCA+GGG 0.668848 1_1:-63160096 Msa0035120:five_prime_UTR
CAGCTGCTATACATGGAGAA+CGG 0.673496 1_1:-63161368 Msa0035120:five_prime_UTR
TGTTGCAGACTGTCCCACAC+GGG 0.680353 1_1:+63161626 None:intergenic
CGACTCAACTGAGATCTCGA+CGG 0.682878 1_1:-63163824 Msa0035120:five_prime_UTR
TTTCAAAAGATGGTTACACA+AGG 0.684315 1_1:-63156999 Msa0035120:three_prime_UTR
ACAAAGCAGAACAAAACTCG+CGG 0.688250 1_1:+63163895 None:intergenic
AAACCTTATAGCGAGCAGGT+GGG 0.714483 1_1:+63162950 None:intergenic
TGTCGTCGAAGATCGGACGG+TGG 0.719505 1_1:+63163783 None:intergenic
CTCAACTGAGATCTCGACGG+TGG 0.720559 1_1:-63163821 Msa0035120:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTATTGAATTATATTTTT+AGG - chr1_1:63158940-63158959 Msa0035120:intron 10.0%
!!! AAATAATTTTATTCAATAAC+AGG + chr1_1:63161276-63161295 None:intergenic 10.0%
!! AATATACATACTTAAATATA+TGG + chr1_1:63163802-63163821 None:intergenic 10.0%
!!! GATGAAAAATTATACATTTT+CGG - chr1_1:63158021-63158040 Msa0035120:intron 15.0%
!!! TTTTAAATACTACTTTCTTT+GGG - chr1_1:63158313-63158332 Msa0035120:intron 15.0%
!!! TTTTGATTTATTTTGAGATT+TGG - chr1_1:63158376-63158395 Msa0035120:intron 15.0%
!!! AAAAATTAAGAGTATGATAT+TGG + chr1_1:63158802-63158821 None:intergenic 15.0%
!!! ATTAAATCAAAGTACTAATA+AGG - chr1_1:63159472-63159491 Msa0035120:intron 15.0%
!!! AAACTATATTTTGCAATTTA+GGG + chr1_1:63160938-63160957 None:intergenic 15.0%
!!! TTATGTTTTTATTAATATGG+AGG - chr1_1:63161225-63161244 Msa0035120:intron 15.0%
!!! ATTCTTTTTATTATAGTAGA+TGG - chr1_1:63162008-63162027 Msa0035120:five_prime_UTR 15.0%
!! TTATTGAATTCAAGTAAATT+AGG - chr1_1:63162086-63162105 Msa0035120:intron 15.0%
!!! TTGTAATTCGTAATTTTAAT+AGG - chr1_1:63163741-63163760 Msa0035120:intron 15.0%
!! AAATTCGAAATGAATGAATT+GGG + chr1_1:63156999-63157018 None:intergenic 20.0%
!! AGTATAGTATGCATAAATTA+TGG + chr1_1:63157273-63157292 None:intergenic 20.0%
!! AAGAACTTACATATGATAAT+TGG - chr1_1:63157708-63157727 Msa0035120:intron 20.0%
!! AGAACTTACATATGATAATT+GGG - chr1_1:63157709-63157728 Msa0035120:intron 20.0%
!!! TCCTTTTCTTATTTTATTAG+AGG - chr1_1:63157797-63157816 Msa0035120:CDS 20.0%
!! TCCTCTAATAAAATAAGAAA+AGG + chr1_1:63157801-63157820 None:intergenic 20.0%
!!! TTTCTTATTTTATTAGAGGA+TGG - chr1_1:63157801-63157820 Msa0035120:CDS 20.0%
!! CAATTACAAAATTAAAACGA+AGG - chr1_1:63157831-63157850 Msa0035120:CDS 20.0%
!!! GTTTTAAATACTACTTTCTT+TGG - chr1_1:63158312-63158331 Msa0035120:intron 20.0%
!! AAAATAAATCAAAATCCAGA+TGG + chr1_1:63158370-63158389 None:intergenic 20.0%
!! ACTTCAAGCTATAAAATTAA+TGG + chr1_1:63158742-63158761 None:intergenic 20.0%
!!! AATAAGAAAAAGTACGATAA+AGG + chr1_1:63158927-63158946 None:intergenic 20.0%
!!! ACATTTTTTTAATGGATAGT+TGG + chr1_1:63158999-63159018 None:intergenic 20.0%
!! AACTATCCATTAAAAAAATG+TGG - chr1_1:63158998-63159017 Msa0035120:intron 20.0%
!! ACTATCCATTAAAAAAATGT+GGG - chr1_1:63158999-63159018 Msa0035120:intron 20.0%
!!! TGTTTTTAGTCTATTTTTCT+AGG - chr1_1:63159055-63159074 Msa0035120:intron 20.0%
!!! GAAAAAACTATTTTGTGTAT+GGG + chr1_1:63159572-63159591 None:intergenic 20.0%
!!! AGAAAAAACTATTTTGTGTA+TGG + chr1_1:63159573-63159592 None:intergenic 20.0%
!!! TCCTTTTAAACTTTCAAATT+AGG - chr1_1:63160429-63160448 Msa0035120:intron 20.0%
!! ACCTAATTTGAAAGTTTAAA+AGG + chr1_1:63160433-63160452 None:intergenic 20.0%
!!! AAAACAACTTTTAAGATCAA+CGG + chr1_1:63160501-63160520 None:intergenic 20.0%
!!! CAAACTATATTTTGCAATTT+AGG + chr1_1:63160939-63160958 None:intergenic 20.0%
!! TTATGGTTCATTTAGAAATA+AGG + chr1_1:63160965-63160984 None:intergenic 20.0%
!!! GATTATATGATTTTTGAAAC+AGG - chr1_1:63161087-63161106 Msa0035120:intron 20.0%
!! ATGAGGAATTGTTTAATAAA+AGG + chr1_1:63161496-63161515 None:intergenic 20.0%
!! TTTGAAGATAAAAAATAGAC+AGG - chr1_1:63161640-63161659 Msa0035120:intron 20.0%
!! AAGTAGATAATCAATCAAAA+TGG - chr1_1:63161712-63161731 Msa0035120:intron 20.0%
!! AGTAGATAATCAATCAAAAT+GGG - chr1_1:63161713-63161732 Msa0035120:intron 20.0%
!! CATATAAATCAATATGCAAA+GGG + chr1_1:63161797-63161816 None:intergenic 20.0%
!! ACATATAAATCAATATGCAA+AGG + chr1_1:63161798-63161817 None:intergenic 20.0%
!!! TAAGTTTTCATTACTTATCA+GGG - chr1_1:63161822-63161841 Msa0035120:intron 20.0%
!! ATTTCCTTTACAAACTAAAT+TGG + chr1_1:63162130-63162149 None:intergenic 20.0%
!! ATTATATCATGCAAATTGAT+TGG - chr1_1:63162578-63162597 Msa0035120:intron 20.0%
!! TTATATCATGCAAATTGATT+GGG - chr1_1:63162579-63162598 Msa0035120:intron 20.0%
!!! TAATCTCTTTTCTTCTTTAA+TGG + chr1_1:63162995-63163014 None:intergenic 20.0%
!! TAAAGAAGAAAAGAGATTAT+TGG - chr1_1:63162996-63163015 Msa0035120:five_prime_UTR 20.0%
!! TCCTGAAAATACATATTTAA+CGG + chr1_1:63163171-63163190 None:intergenic 20.0%
!!! TTTTAATAGGTTACTTTTGT+CGG - chr1_1:63163754-63163773 Msa0035120:five_prime_UTR 20.0%
! GAAATTCGAAATGAATGAAT+TGG + chr1_1:63157000-63157019 None:intergenic 25.0%
! GATTGATAGGAATAAAATCA+CGG + chr1_1:63157070-63157089 None:intergenic 25.0%
!! AAGCAAAATGTATCTGAAAT+TGG + chr1_1:63157104-63157123 None:intergenic 25.0%
! ATAAGAAAAGGAGAAAGATA+GGG + chr1_1:63157789-63157808 None:intergenic 25.0%
! AATAAGAAAAGGAGAAAGAT+AGG + chr1_1:63157790-63157809 None:intergenic 25.0%
! AGAAATCAATTTGTCATTCT+TGG - chr1_1:63157912-63157931 Msa0035120:intron 25.0%
!! GAAAAATTATACATTTTCGG+TGG - chr1_1:63158024-63158043 Msa0035120:intron 25.0%
! TGAAAATTCACAATGTTCAT+TGG - chr1_1:63158633-63158652 Msa0035120:intron 25.0%
!! AATTTTTCTTACTGAAAACC+TGG - chr1_1:63158815-63158834 Msa0035120:CDS 25.0%
!!! TAAAGCATTAACACATTTTC+TGG + chr1_1:63159244-63159263 None:intergenic 25.0%
! CAAAAGGTTAAAATAAGTGT+AGG + chr1_1:63160264-63160283 None:intergenic 25.0%
!! AGATCTCTAAAGATAATAGT+TGG + chr1_1:63160290-63160309 None:intergenic 25.0%
! TTCAAATATCAGCATATGAA+AGG + chr1_1:63160313-63160332 None:intergenic 25.0%
! ATGTTTCATTGGAAACATAA+TGG - chr1_1:63160340-63160359 Msa0035120:intron 25.0%
!!! CATGAAAAATGCTTTAGTTT+TGG - chr1_1:63160475-63160494 Msa0035120:intron 25.0%
!! TTCTAAAAATGCACATAAAG+TGG + chr1_1:63160770-63160789 None:intergenic 25.0%
! ACCATAATAAACTTCTTACA+AGG - chr1_1:63160978-63160997 Msa0035120:intron 25.0%
! TCCTTGTAAGAAGTTTATTA+TGG + chr1_1:63160982-63161001 None:intergenic 25.0%
! TAATAAACTTCTTACAAGGA+AGG - chr1_1:63160982-63161001 Msa0035120:intron 25.0%
! AATAAACTTCTTACAAGGAA+GGG - chr1_1:63160983-63161002 Msa0035120:intron 25.0%
!!! CAATGAAACTATGTTTTTTG+TGG - chr1_1:63161058-63161077 Msa0035120:intron 25.0%
!! TTTTATTCAATAACAGGTCT+TGG + chr1_1:63161270-63161289 None:intergenic 25.0%
! ATATATATATCATTCCTGCA+AGG - chr1_1:63161312-63161331 Msa0035120:five_prime_UTR 25.0%
! TATATATATCATTCCTGCAA+GGG - chr1_1:63161313-63161332 Msa0035120:five_prime_UTR 25.0%
! ATAAATCCTTTAAATCTACC+TGG + chr1_1:63161532-63161551 None:intergenic 25.0%
! GTAGATAATCAATCAAAATG+GGG - chr1_1:63161714-63161733 Msa0035120:intron 25.0%
! TAGATAATCAATCAAAATGG+GGG - chr1_1:63161715-63161734 Msa0035120:intron 25.0%
!! GTAAGTTTTCATTACTTATC+AGG - chr1_1:63161821-63161840 Msa0035120:intron 25.0%
!! TAGTTTGTAAAGGAAATCAT+TGG - chr1_1:63162133-63162152 Msa0035120:intron 25.0%
!! CTATTTGTGTTTGTTAACAT+TGG - chr1_1:63162179-63162198 Msa0035120:intron 25.0%
! TGACTATTACAAAGAATAAC+CGG + chr1_1:63162261-63162280 None:intergenic 25.0%
! TTCTTTGTAATAGTCAATGT+TGG - chr1_1:63162265-63162284 Msa0035120:five_prime_UTR 25.0%
! TCTTTGTAATAGTCAATGTT+GGG - chr1_1:63162266-63162285 Msa0035120:five_prime_UTR 25.0%
! GCATCAATTATTATCCAAAT+AGG - chr1_1:63162531-63162550 Msa0035120:five_prime_UTR 25.0%
!! ACCGTTAAATATGTATTTTC+AGG - chr1_1:63163167-63163186 Msa0035120:intron 25.0%
!!! TTTTTGGAGTTCTGTAATTT+TGG + chr1_1:63163339-63163358 None:intergenic 25.0%
!!! TTTAATAGGTTACTTTTGTC+GGG - chr1_1:63163755-63163774 Msa0035120:five_prime_UTR 25.0%
TACAATGTGATATGAACCTT+AGG - chr1_1:63157032-63157051 Msa0035120:three_prime_UTR 30.0%
GGAAATCAAGATTGATTGAT+AGG + chr1_1:63157083-63157102 None:intergenic 30.0%
AACTTCTAGCAAGAAAATCA+GGG + chr1_1:63157212-63157231 None:intergenic 30.0%
AGTATGCATAAATTATGGCA+TGG + chr1_1:63157268-63157287 None:intergenic 30.0%
! TTCAGAATTTGTTTGTTGCA+TGG - chr1_1:63157301-63157320 Msa0035120:CDS 30.0%
AGAAAGAACACATACAATCA+TGG + chr1_1:63157507-63157526 None:intergenic 30.0%
GCATACATGTAATTCATGAT+TGG - chr1_1:63157853-63157872 Msa0035120:CDS 30.0%
ACATGTAATTCATGATTGGT+TGG - chr1_1:63157857-63157876 Msa0035120:CDS 30.0%
! CATGTAATTCATGATTGGTT+GGG - chr1_1:63157858-63157877 Msa0035120:CDS 30.0%
! AAAAAACCTTTCTTAGCCTT+GGG - chr1_1:63157944-63157963 Msa0035120:intron 30.0%
TACATGATTTAGTTGTTTGC+AGG - chr1_1:63158131-63158150 Msa0035120:intron 30.0%
TTTGGAAATTTCTGCAGATT+AGG - chr1_1:63158394-63158413 Msa0035120:intron 30.0%
AAGTCTTAATAACTCCAAAC+TGG + chr1_1:63158695-63158714 None:intergenic 30.0%
! TTTGGAGTTATTAAGACTTC+TGG - chr1_1:63158696-63158715 Msa0035120:intron 30.0%
AAATTAATGGTCACACTTAC+CGG + chr1_1:63158729-63158748 None:intergenic 30.0%
!!! GTGTGTTTTTTGTTTGGTTA+TGG - chr1_1:63158773-63158792 Msa0035120:intron 30.0%
GATAAAGGATGTAAACAGAA+CGG + chr1_1:63158912-63158931 None:intergenic 30.0%
!!! TGACTCCCACATTTTTTTAA+TGG + chr1_1:63159007-63159026 None:intergenic 30.0%
TCAAGAGTTATATTGTTTGC+TGG - chr1_1:63159113-63159132 Msa0035120:intron 30.0%
CCTATCAAAATTCAAGAAAG+TGG + chr1_1:63159288-63159307 None:intergenic 30.0%
!! CCACTTTCTTGAATTTTGAT+AGG - chr1_1:63159285-63159304 Msa0035120:intron 30.0%
!! ATAAGGTTGTTTCTTCTATC+TGG - chr1_1:63159489-63159508 Msa0035120:intron 30.0%
!! TAAGGTTGTTTCTTCTATCT+GGG - chr1_1:63159490-63159509 Msa0035120:intron 30.0%
! AAAACTATTTTGTGTATGGG+TGG + chr1_1:63159569-63159588 None:intergenic 30.0%
AAAAAACCACTTCTGTGTAT+GGG + chr1_1:63159604-63159623 None:intergenic 30.0%
TAAAAAACCACTTCTGTGTA+TGG + chr1_1:63159605-63159624 None:intergenic 30.0%
AAAAAGGACTGTAGAATTCA+AGG - chr1_1:63159666-63159685 Msa0035120:intron 30.0%
ATAACTATAGGAATCTGAGT+TGG - chr1_1:63159719-63159738 Msa0035120:intron 30.0%
TATTCTGTTTGAAGACTACA+TGG - chr1_1:63160017-63160036 Msa0035120:intron 30.0%
ACTAAATGACAAAAACTGAG+GGG + chr1_1:63160119-63160138 None:intergenic 30.0%
GACTAAATGACAAAAACTGA+GGG + chr1_1:63160120-63160139 None:intergenic 30.0%
AGACTAAATGACAAAAACTG+AGG + chr1_1:63160121-63160140 None:intergenic 30.0%
!! CAGTTTTTGTCATTTAGTCT+TGG - chr1_1:63160121-63160140 Msa0035120:five_prime_UTR 30.0%
TATATCATTTCGTCATCGAT+TGG - chr1_1:63160188-63160207 Msa0035120:intron 30.0%
! ATATCATTTCGTCATCGATT+GGG - chr1_1:63160189-63160208 Msa0035120:intron 30.0%
!! AGATAATAGTTGGTGTCAAA+AGG + chr1_1:63160280-63160299 None:intergenic 30.0%
TCATATGCTGATATTTGAAG+TGG - chr1_1:63160314-63160333 Msa0035120:intron 30.0%
CATTGGAAACATAATGGTTA+TGG - chr1_1:63160346-63160365 Msa0035120:intron 30.0%
TTGTATGTACTTTCATTCCA+TGG + chr1_1:63160400-63160419 None:intergenic 30.0%
TTGTTAGATCATCACATTGT+TGG + chr1_1:63160550-63160569 None:intergenic 30.0%
GATGATCTAACAATCTCATT+TGG - chr1_1:63160557-63160576 Msa0035120:intron 30.0%
CTCAATCCAAATATATCAGA+GGG - chr1_1:63160903-63160922 Msa0035120:intron 30.0%
ATAAACTTCTTACAAGGAAG+GGG - chr1_1:63160984-63161003 Msa0035120:intron 30.0%
ATATAGCTTGATGTATGCAT+AGG + chr1_1:63161034-63161053 None:intergenic 30.0%
! TAAACATGTCCAAACTTGTT+TGG - chr1_1:63161130-63161149 Msa0035120:intron 30.0%
ATATATATCATTCCTGCAAG+GGG - chr1_1:63161314-63161333 Msa0035120:five_prime_UTR 30.0%
AGATGTATCTTCTACAACTT+CGG + chr1_1:63161408-63161427 None:intergenic 30.0%
AAATCCAATCCAAAATGCAA+CGG + chr1_1:63161441-63161460 None:intergenic 30.0%
TTTAAATCTACCTGGAACTT+TGG + chr1_1:63161524-63161543 None:intergenic 30.0%
AAAGTTCCAGGTAGATTTAA+AGG - chr1_1:63161523-63161542 Msa0035120:five_prime_UTR 30.0%
! GAAACATATCTGTTTGCTTT+TGG - chr1_1:63161876-63161895 Msa0035120:intron 30.0%
!! TGAGATTTTGACAACACAAA+TGG + chr1_1:63161982-63162001 None:intergenic 30.0%
ATGGAGATTGATGAAATACT+TGG - chr1_1:63162053-63162072 Msa0035120:intron 30.0%
!! GAGTCCAATTTAGTTTGTAA+AGG - chr1_1:63162123-63162142 Msa0035120:intron 30.0%
!! ATTAGCTTTGAAACTTGACT+TGG - chr1_1:63162204-63162223 Msa0035120:intron 30.0%
!! TTTTTGCTTTTGTGGAAATC+AGG + chr1_1:63162306-63162325 None:intergenic 30.0%
AGATTAAGAGTGAAGATATC+TGG - chr1_1:63162390-63162409 Msa0035120:intron 30.0%
TTAGCACTGTGATTAAGATT+AGG - chr1_1:63162479-63162498 Msa0035120:five_prime_UTR 30.0%
ACTGTGATTAAGATTAGGAT+TGG - chr1_1:63162484-63162503 Msa0035120:five_prime_UTR 30.0%
TTAATGCTAATAAAACCCAG+TGG - chr1_1:63162509-63162528 Msa0035120:five_prime_UTR 30.0%
ATTGTCTAAATCTGAGAAGT+TGG - chr1_1:63162888-63162907 Msa0035120:intron 30.0%
! ACCTTCAAGCTTAGAATTTT+CGG + chr1_1:63163046-63163065 None:intergenic 30.0%
CCATAGTTAACTTCAAAGAT+GGG + chr1_1:63163267-63163286 None:intergenic 30.0%
TCCATAGTTAACTTCAAAGA+TGG + chr1_1:63163268-63163287 None:intergenic 30.0%
CTATGGATTTATAGTTGTGT+AGG - chr1_1:63163281-63163300 Msa0035120:intron 30.0%
TGTGTAGGATTTAAGTATAC+AGG - chr1_1:63163296-63163315 Msa0035120:intron 30.0%
TACAGAACTCCAAAAATTGT+TGG - chr1_1:63163343-63163362 Msa0035120:intron 30.0%
!!! GCATTGATTCCAACAATTTT+TGG + chr1_1:63163355-63163374 None:intergenic 30.0%
GTGAAAAATGAAGATTGTGA+GGG - chr1_1:63163498-63163517 Msa0035120:intron 30.0%
!! AATGCCACTTAAAGTGATTT+TGG - chr1_1:63163522-63163541 Msa0035120:intron 30.0%
AACTCCAAAATCACTTTAAG+TGG + chr1_1:63163529-63163548 None:intergenic 30.0%
!!! GTGATTTTGGAGTTTATTCT+TGG - chr1_1:63163535-63163554 Msa0035120:intron 30.0%
!!! ATTTTAGTTCGTGCAGAAAA+TGG - chr1_1:63163597-63163616 Msa0035120:intron 30.0%
TTTCAAAAGATGGTTACACA+AGG - chr1_1:63163708-63163727 Msa0035120:intron 30.0%
GATTGAATGAAACCTGTTAC+CGG + chr1_1:63156977-63156996 None:intergenic 35.0%
CAACTTCTAGCAAGAAAATC+AGG + chr1_1:63157213-63157232 None:intergenic 35.0%
!! CTAGAAGTTGCAACTTGTTT+TGG - chr1_1:63157223-63157242 Msa0035120:CDS 35.0%
AAAGGAGAATCAGAGAGAAA+TGG - chr1_1:63157667-63157686 Msa0035120:intron 35.0%
GAGAAATGGAAGTCAACAAT+TGG - chr1_1:63157681-63157700 Msa0035120:intron 35.0%
AAATAAACCTTATAGCGAGC+AGG + chr1_1:63157764-63157783 None:intergenic 35.0%
CAAAAAACCTTTCTTAGCCT+TGG - chr1_1:63157943-63157962 Msa0035120:intron 35.0%
TGGAATAAGAATATGACCCA+AGG + chr1_1:63157963-63157982 None:intergenic 35.0%
TTATCGGATGTTCAGGTATA+TGG - chr1_1:63158066-63158085 Msa0035120:intron 35.0%
CTAAAGCTAAAAGCTGATAC+TGG - chr1_1:63158186-63158205 Msa0035120:intron 35.0%
GCTGATACTGGAAAAGATAA+TGG - chr1_1:63158198-63158217 Msa0035120:intron 35.0%
GAAATTTCTGCAGATTAGGT+GGG - chr1_1:63158398-63158417 Msa0035120:intron 35.0%
AAATTTCTGCAGATTAGGTG+GGG - chr1_1:63158399-63158418 Msa0035120:intron 35.0%
GAGAAACTACTTATTCTTGG+TGG - chr1_1:63158423-63158442 Msa0035120:intron 35.0%
GACACTTCTGATACTTTAAC+AGG - chr1_1:63158456-63158475 Msa0035120:intron 35.0%
GTGTGTGTCATATTATAGCA+TGG - chr1_1:63158600-63158619 Msa0035120:intron 35.0%
TACTGAAAACCTGGTTTACA+AGG - chr1_1:63158824-63158843 Msa0035120:CDS 35.0%
CATGAATCAATAAACCCCAT+TGG + chr1_1:63158850-63158869 None:intergenic 35.0%
! TATTGTTTGCTGGTGAAGAT+AGG - chr1_1:63159123-63159142 Msa0035120:intron 35.0%
TACTTTCAAGATCGAGAACA+TGG + chr1_1:63159172-63159191 None:intergenic 35.0%
! TCGATCTTGAAAGTATGACT+TGG - chr1_1:63159177-63159196 Msa0035120:intron 35.0%
! CGATCTTGAAAGTATGACTT+GGG - chr1_1:63159178-63159197 Msa0035120:intron 35.0%
! GAACGGTACCTTATGATTTT+TGG - chr1_1:63159356-63159375 Msa0035120:intron 35.0%
AGCAACCACCAAAAATCATA+AGG + chr1_1:63159367-63159386 None:intergenic 35.0%
TCACAGTTTGCAAGTCTAAT+AGG + chr1_1:63159418-63159437 None:intergenic 35.0%
!! AAGGTTGTTTCTTCTATCTG+GGG - chr1_1:63159491-63159510 Msa0035120:intron 35.0%
TGAGTGTACACTTGGATAAT+GGG + chr1_1:63159642-63159661 None:intergenic 35.0%
! TTTTCTTCTGAGTGTACACT+TGG + chr1_1:63159650-63159669 None:intergenic 35.0%
AGTGTACACTCAGAAGAAAA+AGG - chr1_1:63159650-63159669 Msa0035120:intron 35.0%
TGCTGTGATAGCATAACTAT+AGG - chr1_1:63159707-63159726 Msa0035120:intron 35.0%
ACAGAATAGTACAGACTCTT+GGG + chr1_1:63160005-63160024 None:intergenic 35.0%
AACAGAATAGTACAGACTCT+TGG + chr1_1:63160006-63160025 None:intergenic 35.0%
CTAAATGACAAAAACTGAGG+GGG + chr1_1:63160118-63160137 None:intergenic 35.0%
TGAAGTGGAACATGTTTCAT+TGG - chr1_1:63160329-63160348 Msa0035120:intron 35.0%
! ACAATCTCATTTGGTTCAGA+TGG - chr1_1:63160566-63160585 Msa0035120:intron 35.0%
ACTAAATCACCTTGAGATTG+TGG + chr1_1:63160603-63160622 None:intergenic 35.0%
! TTGTGTTTAAAGTTTCACGC+AGG + chr1_1:63160828-63160847 None:intergenic 35.0%
CTGATATATTTGGATTGAGC+AGG + chr1_1:63160902-63160921 None:intergenic 35.0%
GCTCAATCCAAATATATCAG+AGG - chr1_1:63160902-63160921 Msa0035120:intron 35.0%
! TTTGGACATGTTTAAGACCA+GGG + chr1_1:63161124-63161143 None:intergenic 35.0%
CAAAACTGACCAAACAAGTT+TGG + chr1_1:63161142-63161161 None:intergenic 35.0%
TATATATCATTCCTGCAAGG+GGG - chr1_1:63161315-63161334 Msa0035120:five_prime_UTR 35.0%
TAATCAGAAGGTCTCAATGT+GGG + chr1_1:63161359-63161378 None:intergenic 35.0%
ACTTCGGTAATGACTAATGA+GGG + chr1_1:63161392-63161411 None:intergenic 35.0%
AACTTCGGTAATGACTAATG+AGG + chr1_1:63161393-63161412 None:intergenic 35.0%
!!! GATTAGTTTCCGTTGCATTT+TGG - chr1_1:63161429-63161448 Msa0035120:intron 35.0%
GAATCTCATTCCAATCATCT+TGG - chr1_1:63161462-63161481 Msa0035120:intron 35.0%
TATCTTCAAAGTTGCCCTTT+GGG + chr1_1:63161630-63161649 None:intergenic 35.0%
TTATCTTCAAAGTTGCCCTT+TGG + chr1_1:63161631-63161650 None:intergenic 35.0%
GCGATAATATGAAAGGAAGT+AGG - chr1_1:63161666-63161685 Msa0035120:intron 35.0%
!! ACATATCTGTTTGCTTTTGG+TGG - chr1_1:63161879-63161898 Msa0035120:intron 35.0%
AAATTGGACTCGTGTTATAG+TGG + chr1_1:63162114-63162133 None:intergenic 35.0%
!!! CTTGACTTGGATAATTTTGC+TGG - chr1_1:63162217-63162236 Msa0035120:intron 35.0%
!! ACACTAGGTTTTTGCTTTTG+TGG + chr1_1:63162314-63162333 None:intergenic 35.0%
AAAGCAAAAACCTAGTGTTG+TGG - chr1_1:63162316-63162335 Msa0035120:intron 35.0%
!! ATTTTGATCTCCACAACACT+AGG + chr1_1:63162329-63162348 None:intergenic 35.0%
GGATAATAATTGATGCCACT+GGG + chr1_1:63162527-63162546 None:intergenic 35.0%
TGGATAATAATTGATGCCAC+TGG + chr1_1:63162528-63162547 None:intergenic 35.0%
! TATCTCACTAGCTTCCTATT+TGG + chr1_1:63162548-63162567 None:intergenic 35.0%
AATAGGAAGCTAGTGAGATA+AGG - chr1_1:63162548-63162567 Msa0035120:five_prime_UTR 35.0%
ACTAGCAAGTTCAGAATTTG+TGG + chr1_1:63162671-63162690 None:intergenic 35.0%
! GTTTCTGTGATTGATGACTA+GGG - chr1_1:63162749-63162768 Msa0035120:intron 35.0%
ACTAGGGACTGTGTAAATTT+AGG - chr1_1:63162765-63162784 Msa0035120:intron 35.0%
AATCCCAAGTCATCTGTAAA+TGG - chr1_1:63162934-63162953 Msa0035120:intron 35.0%
TGACCATTTACAGATGACTT+GGG + chr1_1:63162940-63162959 None:intergenic 35.0%
ATGACCATTTACAGATGACT+TGG + chr1_1:63162941-63162960 None:intergenic 35.0%
AAATGTCAATGACAGAAGTC+AGG - chr1_1:63163019-63163038 Msa0035120:five_prime_UTR 35.0%
AATGTCAATGACAGAAGTCA+GGG - chr1_1:63163020-63163039 Msa0035120:five_prime_UTR 35.0%
TAATCATGCTGAATTGACCA+AGG - chr1_1:63163086-63163105 Msa0035120:five_prime_UTR 35.0%
TCAAGTCGTAATACATACCT+TGG + chr1_1:63163106-63163125 None:intergenic 35.0%
!! GAAAGTGAATTTTAACCTCC+AGG + chr1_1:63163245-63163264 None:intergenic 35.0%
!! CCCATCTTTGAAGTTAACTA+TGG - chr1_1:63163264-63163283 Msa0035120:intron 35.0%
TACAGGTAATGTTTGTTTCC+AGG - chr1_1:63163313-63163332 Msa0035120:intron 35.0%
GGTGAAAAATGAAGATTGTG+AGG - chr1_1:63163497-63163516 Msa0035120:intron 35.0%
!! TCTTTAAGATGCTAGACTAG+AGG - chr1_1:63163870-63163889 Msa0035120:five_prime_UTR 35.0%
ACAAAGCAGAACAAAACTCG+CGG + chr1_1:63156815-63156834 None:intergenic 40.0%
! AGAGAGAGAGAGACTTGTTT+CGG + chr1_1:63156840-63156859 None:intergenic 40.0%
AGAGAACTCAGATCTGGAAA+CGG + chr1_1:63156950-63156969 None:intergenic 40.0%
! ACGGCGAATTTGAAATCCTA+AGG + chr1_1:63157051-63157070 None:intergenic 40.0%
!!! CTGAAGCTTTTTCAGTTCTC+AGG - chr1_1:63157185-63157204 Msa0035120:three_prime_UTR 40.0%
!!! AGTTGCAACTTGTTTTGGTG+TGG - chr1_1:63157228-63157247 Msa0035120:CDS 40.0%
TATGGCATGGCATTATTCCA+CGG + chr1_1:63157255-63157274 None:intergenic 40.0%
ATAGCCTGAAGTGACAATCA+AGG - chr1_1:63157613-63157632 Msa0035120:intron 40.0%
! ATCACCTTGATTGTCACTTC+AGG + chr1_1:63157620-63157639 None:intergenic 40.0%
AACAGGTATTCCTGGACAAA+AGG - chr1_1:63157649-63157668 Msa0035120:intron 40.0%
TGGGTACCTATTACTGTAAC+TGG - chr1_1:63157728-63157747 Msa0035120:intron 40.0%
ATATGACCCAAGGCTAAGAA+AGG + chr1_1:63157953-63157972 None:intergenic 40.0%
CTGCAGTGAAAAACAACACA+TGG + chr1_1:63157983-63158002 None:intergenic 40.0%
! ATTTTCGGTGGAAGTCGTAA+TGG - chr1_1:63158036-63158055 Msa0035120:intron 40.0%
TCGTAATGGTCGGCATTTAT+CGG - chr1_1:63158050-63158069 Msa0035120:intron 40.0%
GGATGTTCAGGTATATGGTA+TGG - chr1_1:63158071-63158090 Msa0035120:intron 40.0%
TTGACTTCAGAAGTTTGACG+TGG - chr1_1:63158157-63158176 Msa0035120:intron 40.0%
! AGATAATGGCAACAGTTCAC+AGG - chr1_1:63158212-63158231 Msa0035120:intron 40.0%
TACCATATTGTGACCAGATG+TGG + chr1_1:63158250-63158269 None:intergenic 40.0%
CAGATGGTCACTAAAACTCA+AGG + chr1_1:63158354-63158373 None:intergenic 40.0%
!! CTTGAGTTTTAGTGACCATC+TGG - chr1_1:63158352-63158371 Msa0035120:intron 40.0%
GGAAATTTCTGCAGATTAGG+TGG - chr1_1:63158397-63158416 Msa0035120:intron 40.0%
AATTTCTGCAGATTAGGTGG+GGG - chr1_1:63158400-63158419 Msa0035120:intron 40.0%
GGGGAGAAACTACTTATTCT+TGG - chr1_1:63158420-63158439 Msa0035120:intron 40.0%
! TTATTCTTGGTGGCAGTTCA+AGG - chr1_1:63158433-63158452 Msa0035120:intron 40.0%
! TATTCTTGGTGGCAGTTCAA+GGG - chr1_1:63158434-63158453 Msa0035120:intron 40.0%
GACATTGAAACATGCCAGTT+TGG - chr1_1:63158678-63158697 Msa0035120:intron 40.0%
!! TAAGACTTCTGGAAGTGTTC+CGG - chr1_1:63158707-63158726 Msa0035120:intron 40.0%
ATAGCTTGAAGTTCCATCCT+TGG - chr1_1:63158750-63158769 Msa0035120:intron 40.0%
TAGCTTGAAGTTCCATCCTT+GGG - chr1_1:63158751-63158770 Msa0035120:intron 40.0%
ACAAAAAACACACCCAAGGA+TGG + chr1_1:63158766-63158785 None:intergenic 40.0%
CCAAACAAAAAACACACCCA+AGG + chr1_1:63158770-63158789 None:intergenic 40.0%
!!! CCTTGGGTGTGTTTTTTGTT+TGG - chr1_1:63158767-63158786 Msa0035120:intron 40.0%
CATGTAACTAACCCTTGTAG+CGG - chr1_1:63158866-63158885 Msa0035120:five_prime_UTR 40.0%
ATGTGGGAGTCATTTGATTG+TGG - chr1_1:63159015-63159034 Msa0035120:intron 40.0%
!! CGGTACCTTATGATTTTTGG+TGG - chr1_1:63159359-63159378 Msa0035120:intron 40.0%
TACGAAAATACTGCCGTGTA+CGG + chr1_1:63159544-63159563 None:intergenic 40.0%
CTGAGTGTACACTTGGATAA+TGG + chr1_1:63159643-63159662 None:intergenic 40.0%
! ACTATAGGAATCTGAGTTGG+TGG - chr1_1:63159722-63159741 Msa0035120:intron 40.0%
ATGCATTCTGTTATCACAGG+AGG + chr1_1:63159756-63159775 None:intergenic 40.0%
CGTATGCATTCTGTTATCAC+AGG + chr1_1:63159759-63159778 None:intergenic 40.0%
GTGATAACAGAATGCATACG+TGG - chr1_1:63159759-63159778 Msa0035120:intron 40.0%
AGAGAACAGCGAATTTACAG+AGG - chr1_1:63159924-63159943 Msa0035120:intron 40.0%
AGGATATGAAGAGACAAGTG+AGG - chr1_1:63159972-63159991 Msa0035120:intron 40.0%
AATAGTACAGACTCTTGGGT+CGG + chr1_1:63160001-63160020 None:intergenic 40.0%
TGTTTGAAGACTACATGGCT+TGG - chr1_1:63160022-63160041 Msa0035120:intron 40.0%
GCATCTTATGCCAAAAGAGA+CGG - chr1_1:63160050-63160069 Msa0035120:five_prime_UTR 40.0%
CATCTTATGCCAAAAGAGAC+GGG - chr1_1:63160051-63160070 Msa0035120:five_prime_UTR 40.0%
TGCTAGCTATTGAGTTAGAG+AGG - chr1_1:63160144-63160163 Msa0035120:intron 40.0%
! ATGGTCTTACTTCGTTTACC+TGG - chr1_1:63160365-63160384 Msa0035120:intron 40.0%
! CTCATTTGGTTCAGATGGAA+TGG - chr1_1:63160571-63160590 Msa0035120:intron 40.0%
ATCACCTTGAGATTGTGGTT+GGG + chr1_1:63160598-63160617 None:intergenic 40.0%
AATCACCTTGAGATTGTGGT+TGG + chr1_1:63160599-63160618 None:intergenic 40.0%
AAGGTGATTTAGTATCTCCC+AGG - chr1_1:63160610-63160629 Msa0035120:intron 40.0%
AGGTGATTTAGTATCTCCCA+GGG - chr1_1:63160611-63160630 Msa0035120:intron 40.0%
! GTATCACTGTTGATGAAAGC+TGG - chr1_1:63160646-63160665 Msa0035120:intron 40.0%
! GATGAAAGCTGGTTCATAGT+TGG - chr1_1:63160657-63160676 Msa0035120:intron 40.0%
CTATCTTGAAGCGCAATCTA+GGG - chr1_1:63160850-63160869 Msa0035120:intron 40.0%
AAAAATGACTCCCTCTGTGT+AGG - chr1_1:63160873-63160892 Msa0035120:intron 40.0%
ATGCAGCCCTCTGATATATT+TGG + chr1_1:63160912-63160931 None:intergenic 40.0%
! TGTTTAAGACCAGGGTTTCA+GGG + chr1_1:63161116-63161135 None:intergenic 40.0%
! ATGTTTAAGACCAGGGTTTC+AGG + chr1_1:63161117-63161136 None:intergenic 40.0%
! GTTTGGACATGTTTAAGACC+AGG + chr1_1:63161125-63161144 None:intergenic 40.0%
! AAAAGATCCACTTTCTAGCG+AGG - chr1_1:63161176-63161195 Msa0035120:intron 40.0%
GTAATTACCTCGCTAGAAAG+TGG + chr1_1:63161186-63161205 None:intergenic 40.0%
ATGTGGGTCGAAAAAGAAAG+TGG + chr1_1:63161343-63161362 None:intergenic 40.0%
CTAATCAGAAGGTCTCAATG+TGG + chr1_1:63161360-63161379 None:intergenic 40.0%
! GTTTCCGTTGCATTTTGGAT+TGG - chr1_1:63161434-63161453 Msa0035120:intron 40.0%
ATCTTCAAAGTTGCCCTTTG+GGG + chr1_1:63161629-63161648 None:intergenic 40.0%
CAGGCTAGCGATAATATGAA+AGG - chr1_1:63161659-63161678 Msa0035120:intron 40.0%
!! TTTGCTTTTGGTGGCTACAA+TGG - chr1_1:63161888-63161907 Msa0035120:intron 40.0%
!! TTGCTTTTGGTGGCTACAAT+GGG - chr1_1:63161889-63161908 Msa0035120:intron 40.0%
GGTATAGCAATGAGGTATGT+AGG - chr1_1:63161913-63161932 Msa0035120:intron 40.0%
GATAGCTACAACTACAAGAC+CGG - chr1_1:63162239-63162258 Msa0035120:intron 40.0%
TTGTGGAGATCAAAATGCTG+AGG - chr1_1:63162333-63162352 Msa0035120:intron 40.0%
CAATTGCAATACATGGTGTC+AGG + chr1_1:63162638-63162657 None:intergenic 40.0%
CTGACACCATGTATTGCAAT+TGG - chr1_1:63162636-63162655 Msa0035120:intron 40.0%
AGCATGCCAATTGCAATACA+TGG + chr1_1:63162645-63162664 None:intergenic 40.0%
!! TTTTGGTGCATTCCATGTAG+TGG - chr1_1:63162727-63162746 Msa0035120:intron 40.0%
CAATCACAGAAACCACTACA+TGG + chr1_1:63162742-63162761 None:intergenic 40.0%
! GGTTTCTGTGATTGATGACT+AGG - chr1_1:63162748-63162767 Msa0035120:intron 40.0%
!!! GGTTTTTGTTTTGAGACCCA+AGG - chr1_1:63162786-63162805 Msa0035120:intron 40.0%
GAAGTTGGATTTCATGCAAC+TGG - chr1_1:63162903-63162922 Msa0035120:intron 40.0%
GCCGAAAATTCTAAGCTTGA+AGG - chr1_1:63163042-63163061 Msa0035120:five_prime_UTR 40.0%
GAGATCAAGATGCTTTAACC+TGG - chr1_1:63163224-63163243 Msa0035120:intron 40.0%
ATCAAGATGCTTTAACCTGG+AGG - chr1_1:63163227-63163246 Msa0035120:intron 40.0%
!! AAAGAAGTCTGCTTTTGACC+AGG - chr1_1:63163409-63163428 Msa0035120:intron 40.0%
! TTTCCTTGCTACAGAGCTTT+TGG - chr1_1:63163622-63163641 Msa0035120:intron 40.0%
! TTCCTTGCTACAGAGCTTTT+GGG - chr1_1:63163623-63163642 Msa0035120:intron 40.0%
ATGTTGAGCTCCAATCTTGA+TGG - chr1_1:63163677-63163696 Msa0035120:intron 40.0%
AAGTTGCAGTCCATCAAGAT+TGG + chr1_1:63163690-63163709 None:intergenic 40.0%
GGACTGCAACTTTCAAAAGA+TGG - chr1_1:63163698-63163717 Msa0035120:intron 40.0%
! GAGAGAGAGAGACTTGTTTC+GGG + chr1_1:63156839-63156858 None:intergenic 45.0%
AGATCTGAGTTCTCTCTCTC+CGG - chr1_1:63156955-63156974 Msa0035120:three_prime_UTR 45.0%
CAGGAATACCTGTTGCAGTA+CGG + chr1_1:63157643-63157662 None:intergenic 45.0%
! CTCTGATTCTCCTTTTGTCC+AGG + chr1_1:63157662-63157681 None:intergenic 45.0%
CGTGCACCAGTTACAGTAAT+AGG + chr1_1:63157737-63157756 None:intergenic 45.0%
AAACCTTATAGCGAGCAGGT+GGG + chr1_1:63157760-63157779 None:intergenic 45.0%
TAAACCTTATAGCGAGCAGG+TGG + chr1_1:63157761-63157780 None:intergenic 45.0%
! TTTTTCACTGCAGCATGCAG+CGG - chr1_1:63157990-63158009 Msa0035120:intron 45.0%
TCGGCATTTATCGGATGTTC+AGG - chr1_1:63158059-63158078 Msa0035120:intron 45.0%
! GGTCAGATGCTGCTGAATTT+TGG - chr1_1:63158092-63158111 Msa0035120:intron 45.0%
ATATTGTGACCAGATGTGGC+AGG + chr1_1:63158246-63158265 None:intergenic 45.0%
TGCCACATCTGGTCACAATA+TGG - chr1_1:63158245-63158264 Msa0035120:intron 45.0%
ATTTCTGCAGATTAGGTGGG+GGG - chr1_1:63158401-63158420 Msa0035120:intron 45.0%
AACCTGGTTTACAAGGCCAA+TGG - chr1_1:63158831-63158850 Msa0035120:CDS 45.0%
ACCTGGTTTACAAGGCCAAT+GGG - chr1_1:63158832-63158851 Msa0035120:CDS 45.0%
! ATTTTTCTAGGTAGCCCGTG+TGG - chr1_1:63159067-63159086 Msa0035120:intron 45.0%
! TTTTTCTAGGTAGCCCGTGT+GGG - chr1_1:63159068-63159087 Msa0035120:intron 45.0%
TTGCTGGTGAAGATAGGAGA+AGG - chr1_1:63159129-63159148 Msa0035120:intron 45.0%
TGATCATATCTAGGAGCTGG+AGG + chr1_1:63159317-63159336 None:intergenic 45.0%
GCATGATCATATCTAGGAGC+TGG + chr1_1:63159320-63159339 None:intergenic 45.0%
GCAGCTGCATGATCATATCT+AGG + chr1_1:63159326-63159345 None:intergenic 45.0%
GATCATGCAGCTGCTATACA+TGG - chr1_1:63159332-63159351 Msa0035120:intron 45.0%
CAGCTGCTATACATGGAGAA+CGG - chr1_1:63159339-63159358 Msa0035120:intron 45.0%
TTCTGTATGTCACCCGTACA+CGG - chr1_1:63159528-63159547 Msa0035120:intron 45.0%
ACGAAAATACTGCCGTGTAC+GGG + chr1_1:63159543-63159562 None:intergenic 45.0%
! GTACACGGCAGTATTTTCGT+AGG - chr1_1:63159543-63159562 Msa0035120:five_prime_UTR 45.0%
ATGTCACCCATACACAGAAG+TGG - chr1_1:63159595-63159614 Msa0035120:five_prime_UTR 45.0%
!! GTGTACACTTGGATAATGGG+AGG + chr1_1:63159639-63159658 None:intergenic 45.0%
GAACAGCGAATTTACAGAGG+AGG - chr1_1:63159927-63159946 Msa0035120:intron 45.0%
AGCGAATTTACAGAGGAGGT+TGG - chr1_1:63159931-63159950 Msa0035120:intron 45.0%
GCGAATTTACAGAGGAGGTT+GGG - chr1_1:63159932-63159951 Msa0035120:intron 45.0%
ACAAAAACTGAGGGGGAGAA+AGG + chr1_1:63160111-63160130 None:intergenic 45.0%
TTACCTGGACACGTAATCCA+TGG - chr1_1:63160380-63160399 Msa0035120:intron 45.0%
! ATTCCATGGATTACGTGTCC+AGG + chr1_1:63160386-63160405 None:intergenic 45.0%
! GAAAGCTGGTTCATAGTTGG+TGG - chr1_1:63160660-63160679 Msa0035120:intron 45.0%
! GGTGGTGGCGATAACAAAAA+TGG - chr1_1:63160678-63160697 Msa0035120:intron 45.0%
AAGTTTCACGCAGGTTGCTA+AGG + chr1_1:63160819-63160838 None:intergenic 45.0%
CCTAGATTGCGCTTCAAGAT+AGG + chr1_1:63160852-63160871 None:intergenic 45.0%
CCTATCTTGAAGCGCAATCT+AGG - chr1_1:63160849-63160868 Msa0035120:intron 45.0%
GGCAAACAGAGCTAATCAGA+AGG + chr1_1:63161371-63161390 None:intergenic 45.0%
GGATCGAAGTCCAAGATGAT+TGG + chr1_1:63161475-63161494 None:intergenic 45.0%
AACAGAAATGACTGCCACCT+TGG - chr1_1:63161587-63161606 Msa0035120:five_prime_UTR 45.0%
! CAATGGGAGGTATAGCAATG+AGG - chr1_1:63161905-63161924 Msa0035120:intron 45.0%
!!! TGTTTTGAGACCCAAGGCAA+AGG - chr1_1:63162792-63162811 Msa0035120:intron 45.0%
! TCCCAAGATTTTCCAGTCAC+CGG - chr1_1:63162825-63162844 Msa0035120:intron 45.0%
AGAAGAAACAGAAGCTGCAG+CGG + chr1_1:63162860-63162879 None:intergenic 45.0%
!! GGAGTTCTGTAATTTTGGCC+TGG + chr1_1:63163334-63163353 None:intergenic 45.0%
GTTGGAATCAATGCAGTCTG+TGG - chr1_1:63163361-63163380 Msa0035120:intron 45.0%
AATGCAGTCTGTGGAAGATC+AGG - chr1_1:63163370-63163389 Msa0035120:intron 45.0%
AAGATCAGGTACAGGCTCTT+CGG - chr1_1:63163384-63163403 Msa0035120:intron 45.0%
GAGTTTGGCGATTGTTTGGT+GGG - chr1_1:63163474-63163493 Msa0035120:intron 45.0%
! AGTTTGGCGATTGTTTGGTG+GGG - chr1_1:63163475-63163494 Msa0035120:intron 45.0%
!!! CTATAAATTAATTTTTATAA+TGG - chr1_1:63158486-63158505 Msa0035120:intron 5.0%
!!! ATTTTATGTTTTTATTAATA+TGG - chr1_1:63161222-63161241 Msa0035120:intron 5.0%
!!! AATTTTTTTTTTTTTTACAA+TGG - chr1_1:63162034-63162053 Msa0035120:five_prime_UTR 5.0%
!!! ACTTTTTTTAATTAAAATTT+TGG - chr1_1:63162710-63162729 Msa0035120:intron 5.0%
CGACTCAACTGAGATCTCGA+CGG - chr1_1:63156883-63156902 Msa0035120:three_prime_UTR 50.0%
!! GAAACGGTGTCGTCGAAGAT+CGG + chr1_1:63156934-63156953 None:intergenic 50.0%
GGAGAGAGAGAACTCAGATC+TGG + chr1_1:63156956-63156975 None:intergenic 50.0%
AGTTCTCTCTCTCCGGTAAC+AGG - chr1_1:63156962-63156981 Msa0035120:three_prime_UTR 50.0%
!!! ACTTGTTTTGGTGTGGACCG+TGG - chr1_1:63157235-63157254 Msa0035120:CDS 50.0%
AAGGTGATCCGTACTGCAAC+AGG - chr1_1:63157632-63157651 Msa0035120:intron 50.0%
CGTACTGCAACAGGTATTCC+TGG - chr1_1:63157641-63157660 Msa0035120:intron 50.0%
TCGGTGGAAGTCGTAATGGT+CGG - chr1_1:63158040-63158059 Msa0035120:intron 50.0%
CCTGGTTTACAAGGCCAATG+GGG - chr1_1:63158833-63158852 Msa0035120:CDS 50.0%
GTAACTAACCCTTGTAGCGG+CGG - chr1_1:63158869-63158888 Msa0035120:intron 50.0%
TAACTAACCCTTGTAGCGGC+GGG - chr1_1:63158870-63158889 Msa0035120:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1_1:63159788-63159807 Msa0035120:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr1_1:63159789-63159808 Msa0035120:intron 50.0%
!! GAGGTTGGGCTAGCAATGAT+GGG - chr1_1:63159946-63159965 Msa0035120:intron 50.0%
!! AGGTTGGGCTAGCAATGATG+GGG - chr1_1:63159947-63159966 Msa0035120:intron 50.0%
! CTGAACACACCCGTCTCTTT+TGG + chr1_1:63160063-63160082 None:intergenic 50.0%
! TCGTCATCGATTGGGCAGTT+TGG - chr1_1:63160197-63160216 Msa0035120:intron 50.0%
TGGTCCCAACCACAATCTCA+AGG - chr1_1:63160591-63160610 Msa0035120:intron 50.0%
GATTTAGTATCTCCCAGGGC+TGG - chr1_1:63160615-63160634 Msa0035120:intron 50.0%
!! AGCTGGTTCATAGTTGGTGG+TGG - chr1_1:63160663-63160682 Msa0035120:intron 50.0%
CTGGAACTTTGGTCGACATG+AGG + chr1_1:63161513-63161532 None:intergenic 50.0%
CTCATGTCGACCAAAGTTCC+AGG - chr1_1:63161511-63161530 Msa0035120:intron 50.0%
AAATGACTGCCACCTTGGAG+AGG - chr1_1:63161592-63161611 Msa0035120:five_prime_UTR 50.0%
GTTGTTATGCCTCTCCAAGG+TGG + chr1_1:63161604-63161623 None:intergenic 50.0%
GCTGTTGTTATGCCTCTCCA+AGG + chr1_1:63161607-63161626 None:intergenic 50.0%
AGGCATAACAACAGCCCCAA+AGG - chr1_1:63161612-63161631 Msa0035120:five_prime_UTR 50.0%
GGCATAACAACAGCCCCAAA+GGG - chr1_1:63161613-63161632 Msa0035120:five_prime_UTR 50.0%
GTCTGCTCAGGACTGATTGA+TGG - chr1_1:63161852-63161871 Msa0035120:intron 50.0%
!! CTTTTGGTGGCTACAATGGG+AGG - chr1_1:63161892-63161911 Msa0035120:intron 50.0%
! CGCAAAGTGTCCTTTGCCTT+GGG + chr1_1:63162805-63162824 None:intergenic 50.0%
! ACGCAAAGTGTCCTTTGCCT+TGG + chr1_1:63162806-63162825 None:intergenic 50.0%
GCCGGTGACTGGAAAATCTT+GGG + chr1_1:63162829-63162848 None:intergenic 50.0%
AGCCGGTGACTGGAAAATCT+TGG + chr1_1:63162830-63162849 None:intergenic 50.0%
TCAGGAACTCCAATCAGTCC+AGG - chr1_1:63163185-63163204 Msa0035120:intron 50.0%
CAGGAACTCCAATCAGTCCA+GGG - chr1_1:63163186-63163205 Msa0035120:intron 50.0%
CAAGTTGTCCCTGGACTGAT+TGG + chr1_1:63163197-63163216 None:intergenic 50.0%
ATCAGTCCAGGGACAACTTG+TGG - chr1_1:63163197-63163216 Msa0035120:intron 50.0%
GTCTGTGGAAGATCAGGTAC+AGG - chr1_1:63163376-63163395 Msa0035120:intron 50.0%
!! GTCTGCTTTTGACCAGGAGA+TGG - chr1_1:63163415-63163434 Msa0035120:intron 50.0%
GGTGGAGTTTGGCGATTGTT+TGG - chr1_1:63163470-63163489 Msa0035120:intron 50.0%
GGAGTTTGGCGATTGTTTGG+TGG - chr1_1:63163473-63163492 Msa0035120:intron 50.0%
! GTTTGGCGATTGTTTGGTGG+GGG - chr1_1:63163476-63163495 Msa0035120:intron 50.0%
CACCCAAAAGCTCTGTAGCA+AGG + chr1_1:63163628-63163647 None:intergenic 50.0%
! CTTGCTACAGAGCTTTTGGG+TGG - chr1_1:63163626-63163645 Msa0035120:intron 50.0%
CTCAACTGAGATCTCGACGG+TGG - chr1_1:63156886-63156905 Msa0035120:three_prime_UTR 55.0%
GAGAATCTGCCTGCCACATC+TGG - chr1_1:63158234-63158253 Msa0035120:intron 55.0%
!! CCCCATTGGCCTTGTAAACC+AGG + chr1_1:63158836-63158855 None:intergenic 55.0%
AACTAACCCTTGTAGCGGCG+GGG - chr1_1:63158871-63158890 Msa0035120:intron 55.0%
TGTTGCAGACTGTCCCACAC+GGG + chr1_1:63159084-63159103 None:intergenic 55.0%
GTGTTGCAGACTGTCCCACA+CGG + chr1_1:63159085-63159104 None:intergenic 55.0%
TGTGGGACAGTCTGCAACAC+TGG - chr1_1:63159085-63159104 Msa0035120:intron 55.0%
GGACAGTCTGCAACACTGGT+TGG - chr1_1:63159089-63159108 Msa0035120:intron 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG - chr1_1:63159820-63159839 Msa0035120:intron 55.0%
GAGAGAGAGAGAGAGGGAGA+GGG - chr1_1:63159821-63159840 Msa0035120:intron 55.0%
!! GGAGGTTGGGCTAGCAATGA+TGG - chr1_1:63159945-63159964 Msa0035120:intron 55.0%
!! GGTTGGGCTAGCAATGATGG+GGG - chr1_1:63159948-63159967 Msa0035120:intron 55.0%
ATACCAGCATGTCCAGCCCT+GGG + chr1_1:63160630-63160649 None:intergenic 55.0%
CGAGAGTCAACAGTGCTGCA+TGG - chr1_1:63160740-63160759 Msa0035120:intron 55.0%
GAGCAGGATGCCTACACAGA+GGG + chr1_1:63160886-63160905 None:intergenic 55.0%
TGAGCAGGATGCCTACACAG+AGG + chr1_1:63160887-63160906 None:intergenic 55.0%
AACAGGTTGCCCTGAAACCC+TGG - chr1_1:63161104-63161123 Msa0035120:intron 55.0%
AGAAAGTGGTTCCCCCTTGC+AGG + chr1_1:63161329-63161348 None:intergenic 55.0%
CAGGGTCTTAGTGTCTGCTC+AGG - chr1_1:63161840-63161859 Msa0035120:intron 55.0%
TCTCTGCCACAAGTTGTCCC+TGG + chr1_1:63163206-63163225 None:intergenic 55.0%
ACTGCTCAGAGGCAGAGTTC+TGG - chr1_1:63163449-63163468 Msa0035120:intron 55.0%
! GGCAGAGTTCTGGTGGAGTT+TGG - chr1_1:63163459-63163478 Msa0035120:intron 55.0%
TGTCGTCGAAGATCGGACGG+TGG + chr1_1:63156927-63156946 None:intergenic 60.0%
!! CGGTGTCGTCGAAGATCGGA+CGG + chr1_1:63156930-63156949 None:intergenic 60.0%
ACGCCCACCTGCTCGCTATA+AGG - chr1_1:63157754-63157773 Msa0035120:intron 60.0%
AGAGAGAGAGAGGGAGAGGG+AGG - chr1_1:63159824-63159843 Msa0035120:intron 60.0%
GAGAGAGAGAGGGAGAGGGA+GGG - chr1_1:63159825-63159844 Msa0035120:intron 60.0%
AGAGAGAGAGGGAGAGGGAG+GGG - chr1_1:63159826-63159845 Msa0035120:intron 60.0%
! GGGCTAGCAATGATGGGGGA+AGG - chr1_1:63159952-63159971 Msa0035120:intron 60.0%
GATACCAGCATGTCCAGCCC+TGG + chr1_1:63160631-63160650 None:intergenic 60.0%
TTGCAGCGTGCTCCATCTCC+TGG + chr1_1:63163430-63163449 None:intergenic 60.0%
AGCACGCTGCAACTGCTCAG+AGG - chr1_1:63163438-63163457 Msa0035120:intron 60.0%
! GCTCAGAGGCAGAGTTCTGG+TGG - chr1_1:63163452-63163471 Msa0035120:intron 60.0%
AACCCTTGTAGCGGCGGGGA+AGG - chr1_1:63158875-63158894 Msa0035120:intron 65.0%
ACCCTTGTAGCGGCGGGGAA+GGG - chr1_1:63158876-63158895 Msa0035120:intron 65.0%
ACCCTTCCCCGCCGCTACAA+GGG + chr1_1:63158880-63158899 None:intergenic 65.0%
AACCCTTCCCCGCCGCTACA+AGG + chr1_1:63158881-63158900 None:intergenic 65.0%
TTGTAGCGGCGGGGAAGGGT+TGG - chr1_1:63158880-63158899 Msa0035120:intron 65.0%
GAGAGAGAGGGAGAGGGAGG+GGG - chr1_1:63159827-63159846 Msa0035120:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr1_1:63159868-63159887 Msa0035120:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr1_1:63159869-63159888 Msa0035120:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr1_1:63159868-63159887 Msa0035120:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr1_1:63159869-63159888 Msa0035120:intron 65.0%
GAGAGGGAGAGGGAGAGGGA+GGG - chr1_1:63159867-63159886 Msa0035120:intron 65.0%
TCTCCCAGGGCTGGACATGC+TGG - chr1_1:63160624-63160643 Msa0035120:intron 65.0%
AGAGAGGGAGAGGGAGGGGG+AGG - chr1_1:63159830-63159849 Msa0035120:intron 70.0%
GAGAGGGAGAGGGAGGGGGA+GGG - chr1_1:63159831-63159850 Msa0035120:intron 70.0%
AGAGGGAGAGGGAGGGGGAG+GGG - chr1_1:63159832-63159851 Msa0035120:intron 70.0%
AGGGGGAGAGGGAGAGGGAG+AGG - chr1_1:63159862-63159881 Msa0035120:intron 70.0%
GGGGGAGAGGGAGAGGGAGA+GGG - chr1_1:63159863-63159882 Msa0035120:intron 70.0%
GGAGAGGGAGAGGGAGAGGG+AGG - chr1_1:63159866-63159885 Msa0035120:intron 70.0%
AGGGAGAGGGAGAGGGAGGG+AGG - chr1_1:63159882-63159901 Msa0035120:intron 70.0%
GGGAGAGGGAGAGGGAGGGA+GGG - chr1_1:63159883-63159902 Msa0035120:intron 70.0%
AGAGGGAGAGGGAGGGAGGG+AGG - chr1_1:63159886-63159905 Msa0035120:intron 70.0%
GAGGGAGAGGGAGGGAGGGA+GGG - chr1_1:63159887-63159906 Msa0035120:intron 70.0%
GAGAGGGAGGGAGGGAGGGA+GGG - chr1_1:63159891-63159910 Msa0035120:intron 70.0%
GAGGGAGAGGGAGGGGGAGG+GGG - chr1_1:63159833-63159852 Msa0035120:intron 75.0%
GAGAGGGAGGGGGAGGGGGA+GGG - chr1_1:63159837-63159856 Msa0035120:intron 75.0%
AGAGGGAGGGGGAGGGGGAG+GGG - chr1_1:63159838-63159857 Msa0035120:intron 75.0%
AGGGGGAGGGGGAGAGGGAG+AGG - chr1_1:63159856-63159875 Msa0035120:intron 75.0%
GGGGGAGGGGGAGAGGGAGA+GGG - chr1_1:63159857-63159876 Msa0035120:intron 75.0%
GGAGAGGGAGGGAGGGAGGG+AGG - chr1_1:63159890-63159909 Msa0035120:intron 75.0%
AGGGAGGGAGGGAGGGAGGG+AGG - chr1_1:63159894-63159913 Msa0035120:intron 75.0%
GGGAGGGAGGGAGGGAGGGA+GGG - chr1_1:63159895-63159914 Msa0035120:intron 75.0%
CGGCTGCAGCAGCCGGTGAC+TGG + chr1_1:63162840-63162859 None:intergenic 75.0%
GCTGCAGCGGCTGCAGCAGC+CGG + chr1_1:63162847-63162866 None:intergenic 75.0%
! GGAGAGGGAGGGGGAGGGGG+AGG - chr1_1:63159836-63159855 Msa0035120:intron 80.0%
! GAGGGAGGGGGAGGGGGAGG+GGG - chr1_1:63159839-63159858 Msa0035120:intron 80.0%
! GAGGGGGAGGGGGAGGGGGA+GGG - chr1_1:63159843-63159862 Msa0035120:intron 80.0%
! AGGGGGAGGGGGAGGGGGAG+GGG - chr1_1:63159844-63159863 Msa0035120:intron 80.0%
! AGGGGGAGGGGGAGGGGGAG+AGG - chr1_1:63159844-63159863 Msa0035120:intron 80.0%
! GGGGGAGGGGGAGGGGGAGA+GGG - chr1_1:63159851-63159870 Msa0035120:intron 80.0%
! GGAGGGGGAGGGGGAGGGGG+AGG - chr1_1:63159842-63159861 Msa0035120:intron 85.0%
! GGGGGAGGGGGAGGGGGAGG+GGG - chr1_1:63159845-63159864 Msa0035120:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63156811 63163918 63156811 ID=Msa0035120;Name=Msa0035120
chr1_1 mRNA 63156811 63163918 63156811 ID=Msa0035120-mRNA-1;Parent=Msa0035120;Name=Msa0035120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=1152|0.84|0.92|1|0.92|0.92|14|410|145
chr1_1 exon 63156811 63157394 63156811 ID=Msa0035120-mRNA-1:exon:20084;Parent=Msa0035120-mRNA-1
chr1_1 exon 63157481 63157540 63157481 ID=Msa0035120-mRNA-1:exon:20083;Parent=Msa0035120-mRNA-1
chr1_1 exon 63157781 63157928 63157781 ID=Msa0035120-mRNA-1:exon:20082;Parent=Msa0035120-mRNA-1
chr1_1 exon 63158803 63158886 63158803 ID=Msa0035120-mRNA-1:exon:20081;Parent=Msa0035120-mRNA-1
chr1_1 exon 63159532 63159620 63159532 ID=Msa0035120-mRNA-1:exon:20080;Parent=Msa0035120-mRNA-1
chr1_1 exon 63160030 63160144 63160030 ID=Msa0035120-mRNA-1:exon:20079;Parent=Msa0035120-mRNA-1
chr1_1 exon 63161296 63161422 63161296 ID=Msa0035120-mRNA-1:exon:20078;Parent=Msa0035120-mRNA-1
chr1_1 exon 63161513 63161652 63161513 ID=Msa0035120-mRNA-1:exon:20077;Parent=Msa0035120-mRNA-1
chr1_1 exon 63162001 63162062 63162001 ID=Msa0035120-mRNA-1:exon:20076;Parent=Msa0035120-mRNA-1
chr1_1 exon 63162252 63162318 63162252 ID=Msa0035120-mRNA-1:exon:20075;Parent=Msa0035120-mRNA-1
chr1_1 exon 63162463 63162576 63162463 ID=Msa0035120-mRNA-1:exon:20074;Parent=Msa0035120-mRNA-1
chr1_1 exon 63162649 63162726 63162649 ID=Msa0035120-mRNA-1:exon:20073;Parent=Msa0035120-mRNA-1
chr1_1 exon 63162954 63163112 63162954 ID=Msa0035120-mRNA-1:exon:20072;Parent=Msa0035120-mRNA-1
chr1_1 exon 63163746 63163918 63163746 ID=Msa0035120-mRNA-1:exon:20071;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63163746 63163918 63163746 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63162954 63163112 63162954 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63162649 63162726 63162649 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63162463 63162576 63162463 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63162252 63162318 63162252 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63162001 63162062 63162001 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63161513 63161652 63161513 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63161296 63161422 63161296 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63160030 63160144 63160030 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63159532 63159620 63159532 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 five_prime_UTR 63158859 63158886 63158859 ID=Msa0035120-mRNA-1:five_prime_utr;Parent=Msa0035120-mRNA-1
chr1_1 CDS 63158803 63158858 63158803 ID=Msa0035120-mRNA-1:cds;Parent=Msa0035120-mRNA-1
chr1_1 CDS 63157781 63157928 63157781 ID=Msa0035120-mRNA-1:cds;Parent=Msa0035120-mRNA-1
chr1_1 CDS 63157481 63157540 63157481 ID=Msa0035120-mRNA-1:cds;Parent=Msa0035120-mRNA-1
chr1_1 CDS 63157221 63157394 63157221 ID=Msa0035120-mRNA-1:cds;Parent=Msa0035120-mRNA-1
chr1_1 three_prime_UTR 63156811 63157220 63156811 ID=Msa0035120-mRNA-1:three_prime_utr;Parent=Msa0035120-mRNA-1
Gene Sequence

>Msa0035120

ATGGTGAAACATATCTGTTTGCTTTTGGTGGCTACAATGGGAGGTATAGCAATGAGACCCAAGGCAAAGGACACTTTGCGTCCCAAGATTTTCCAGTCACCGGCTGCTGCAGCCGCTGCAGCTTCTGTTTCTTCTGCGTATGCATTGTCTAAATCTGAGAAGTTGGATTTCATGCAACTGGATGATATAAATCCCAAGTCATCTGAACTCCAATCAGTCCAGGGACAACTTGTGGCAGAGAGATCAAGATGCTTTAACCTGGAGGCCAAAATTACAGAACTCCAAAAATTGTTGGAATCAATGCAGTCTGTGGAAGATCAGGTACAGGCTCTTCGGCAAAAGAAGTCTGCTTTTGACCAGGAGATGGAGCACGCTGCAACTGCTCAGAGGCAGAGTTCTGGTGGAGTTTGGCGATTGTTTGGTGGGGGTGAAAAATGA

Protein sequence

>Msa0035120

MVKHICLLLVATMGGIAMRPKAKDTLRPKIFQSPAAAAAAASVSSAYALSKSEKLDFMQLDDINPKSSELQSVQGQLVAERSRCFNLEAKITELQKLLESMQSVEDQVQALRQKKSAFDQEMEHAATAQRQSSGGVWRLFGGGEK*