Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015180 | sp|Q9FIX5|BH092_ARATH | 37.391 | 230 | 130 | 7 | 14 | 239 | 16 | 235 | 6.10e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015180 | Msa0064140 | 0.805387 | 1.368043e-49 | -8.615850e-47 |
| Msa0015180 | Msa0071480 | 0.815894 | 7.316813e-52 | -8.615850e-47 |
| Msa0015180 | Msa0119440 | 0.823579 | 1.283807e-53 | -8.615850e-47 |
| Msa0015180 | Msa0136630 | 0.803851 | 2.861265e-49 | -8.615850e-47 |
| Msa0015180 | Msa0155210 | 0.812547 | 4.012519e-51 | -8.615850e-47 |
| Msa0015180 | Msa0187310 | 0.800507 | 1.395293e-48 | -8.615850e-47 |
| Msa0015180 | Msa0240270 | 0.817939 | 2.542175e-52 | -8.615850e-47 |
| Msa0015180 | Msa0259440 | 0.808027 | 3.789855e-50 | -8.615850e-47 |
| Msa0015180 | Msa0259580 | 0.807033 | 6.157559e-50 | -8.615850e-47 |
| Msa0015180 | Msa0277410 | 0.800292 | 1.543267e-48 | -8.615850e-47 |
| Msa0015180 | Msa0305620 | 0.823632 | 1.247905e-53 | -8.615850e-47 |
| Msa0015180 | Msa0364790 | 0.822590 | 2.183562e-53 | -8.615850e-47 |
| Msa0015180 | Msa0380600 | 0.806377 | 8.471771e-50 | -8.615850e-47 |
| Msa0015180 | Msa0430240 | 0.804899 | 1.730909e-49 | -8.615850e-47 |
| Msa0015180 | Msa0968050 | 0.814879 | 1.230462e-51 | -8.615850e-47 |
| Msa0015180 | Msa1214170 | 0.812337 | 4.460141e-51 | -8.615850e-47 |
| Msa0015180 | Msa1285200 | 0.834564 | 2.786560e-56 | -8.615850e-47 |
| Msa0015180 | Msa1360020 | 0.810290 | 1.240775e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015180 | MtrunA17_Chr1g0165831 | 91.860 | 258 | 20 | 1 | 1 | 258 | 1 | 257 | 3.57e-170 | 469 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015180 | AT5G43650.1 | 37.391 | 230 | 130 | 7 | 14 | 239 | 16 | 235 | 6.20e-37 | 131 |
| Msa0015180 | AT5G43650.2 | 35.885 | 209 | 121 | 6 | 14 | 218 | 16 | 215 | 8.60e-31 | 114 |
Find 42 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTCTATTATTTGCTTAT+TGG | 0.110049 | 1_1:-24567715 | None:intergenic |
| GGGGAACAAAGTTCTCTAAA+AGG | 0.261083 | 1_1:+24566729 | Msa0015180:CDS |
| GACCAACCCAAGGTTAGTTT+TGG | 0.266186 | 1_1:+24566708 | Msa0015180:CDS |
| ACATCACCTAGAAGAATTTC+AGG | 0.273267 | 1_1:-24566588 | None:intergenic |
| CTTGTTCATGTTATTTGAAT+TGG | 0.277473 | 1_1:-24566754 | None:intergenic |
| TTGAAATTGTTGAAAGACTA+TGG | 0.291892 | 1_1:+24567358 | Msa0015180:CDS |
| TGAACAAAAGCACTTAGATT+TGG | 0.329794 | 1_1:-24566678 | None:intergenic |
| TTTGCTTATTGGAACCTTCC+TGG | 0.333412 | 1_1:-24567704 | None:intergenic |
| ACAAGGATGCAAAGAGGAAT+TGG | 0.356536 | 1_1:+24567222 | Msa0015180:CDS |
| GCTACTTTATTTCTCTCTAA+AGG | 0.392734 | 1_1:-24566807 | None:intergenic |
| ATAATAGAATATGAAGGGTT+TGG | 0.401667 | 1_1:+24567726 | Msa0015180:CDS |
| TTGGTTTGGTGAAAGATTGC+AGG | 0.432664 | 1_1:+24567612 | Msa0015180:intron |
| AGAGTGCCATGTCCTACATC+TGG | 0.452452 | 1_1:+24567313 | Msa0015180:CDS |
| TGTTCCCCAAAACTAACCTT+GGG | 0.455941 | 1_1:-24566714 | None:intergenic |
| CTTTGGTTTGTAGCTAAAAG+AGG | 0.467408 | 1_1:-24566624 | None:intergenic |
| GGGAACAAAGTTCTCTAAAA+GGG | 0.477246 | 1_1:+24566730 | Msa0015180:CDS |
| TTGTTCCCCAAAACTAACCT+TGG | 0.481166 | 1_1:-24566715 | None:intergenic |
| AAGCAAATAATAGAATATGA+AGG | 0.490069 | 1_1:+24567720 | Msa0015180:CDS |
| AGGAACTGATGTGGATCAAA+AGG | 0.494409 | 1_1:+24567632 | Msa0015180:CDS |
| GTGTTTGAACAAAATTACTT+TGG | 0.509074 | 1_1:-24566641 | None:intergenic |
| TGTAGTACAAACAGCAGCTA+AGG | 0.514214 | 1_1:+24567186 | Msa0015180:CDS |
| CTTAGATTTGGTGTAGGACA+AGG | 0.518149 | 1_1:-24566666 | None:intergenic |
| ATAGAATCAATTCCAGATGT+AGG | 0.519760 | 1_1:-24567325 | None:intergenic |
| GAAGCTTCATTCTCATGTCC+AGG | 0.530162 | 1_1:+24567686 | Msa0015180:CDS |
| AGCAAATAATAGAATATGAA+GGG | 0.544258 | 1_1:+24567721 | Msa0015180:CDS |
| TTACATGCAGTGCTACCTCA+TGG | 0.551125 | 1_1:+24566912 | Msa0015180:CDS |
| AAGGAAATTCAAAGGCTACA+AGG | 0.552769 | 1_1:+24567205 | Msa0015180:CDS |
| CCCCAAAACTAACCTTGGGT+TGG | 0.563725 | 1_1:-24566710 | None:intergenic |
| ATTCAAATAACATGAACAAG+AGG | 0.577647 | 1_1:+24566757 | Msa0015180:CDS |
| AGTCTTGGAGATAGAATCTG+AGG | 0.586101 | 1_1:+24567432 | Msa0015180:CDS |
| ACATGATTAGTGAAAGAATG+AGG | 0.598991 | 1_1:+24566859 | Msa0015180:CDS |
| CTTCATTCTCATGTCCAGGA+AGG | 0.604044 | 1_1:+24567690 | Msa0015180:CDS |
| GAGCACTAGATGAACTTGAG+TGG | 0.610180 | 1_1:+24567664 | Msa0015180:CDS |
| AAAGCACTTAGATTTGGTGT+AGG | 0.616910 | 1_1:-24566672 | None:intergenic |
| CAGCAGCTAAGGAAATTCAA+AGG | 0.623684 | 1_1:+24567197 | Msa0015180:CDS |
| GATGCAAAGAGGAATTGGAA+AGG | 0.633307 | 1_1:+24567227 | Msa0015180:CDS |
| TCAATTCCAGATGTAGGACA+TGG | 0.671513 | 1_1:-24567319 | None:intergenic |
| AAAGATTGCAGGAACTGATG+TGG | 0.676135 | 1_1:+24567623 | Msa0015180:intron |
| ATATATACTTTGGTTCCATG+AGG | 0.684445 | 1_1:-24566927 | None:intergenic |
| AAGGCTACAAGGATGCAAAG+AGG | 0.691456 | 1_1:+24567216 | Msa0015180:CDS |
| TCAATATAGAGACCAACCCA+AGG | 0.710841 | 1_1:+24566698 | Msa0015180:CDS |
| GCAGAATGTGAAAGAGAACG+TGG | 0.731605 | 1_1:+24566828 | Msa0015180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAATATATGTTAAATA+TGG | - | chr1_1:24567060-24567079 | None:intergenic | 10.0% |
| !! | TCATAAATATATGTTAAATA+TGG | - | chr1_1:24567060-24567079 | None:intergenic | 10.0% |
| !!! | GAATGTTTTTATATATACTT+TGG | - | chr1_1:24566940-24566959 | None:intergenic | 15.0% |
| !!! | AAAAAAGTGCTTATTTTAAA+AGG | - | chr1_1:24567084-24567103 | None:intergenic | 15.0% |
| !!! | TTAATTTGTAAAACTATACA+AGG | + | chr1_1:24567496-24567515 | Msa0015180:intron | 15.0% |
| !!! | TGTTTATTCTAAAAATTTGT+TGG | + | chr1_1:24567593-24567612 | Msa0015180:intron | 15.0% |
| !! | ATATTCTATTATTTGCTTAT+TGG | - | chr1_1:24567718-24567737 | None:intergenic | 15.0% |
| !!! | GAATGTTTTTATATATACTT+TGG | - | chr1_1:24566940-24566959 | None:intergenic | 15.0% |
| !!! | AAAAAAGTGCTTATTTTAAA+AGG | - | chr1_1:24567084-24567103 | None:intergenic | 15.0% |
| !!! | TTAATTTGTAAAACTATACA+AGG | + | chr1_1:24567496-24567515 | Msa0015180:intron | 15.0% |
| !!! | TGTTTATTCTAAAAATTTGT+TGG | + | chr1_1:24567593-24567612 | Msa0015180:intron | 15.0% |
| !! | ATATTCTATTATTTGCTTAT+TGG | - | chr1_1:24567718-24567737 | None:intergenic | 15.0% |
| !! | TAATTGTGTTTGTAACATAA+AGG | - | chr1_1:24567014-24567033 | None:intergenic | 20.0% |
| !! | TTATGTTACAAACACAATTA+TGG | + | chr1_1:24567014-24567033 | Msa0015180:intron | 20.0% |
| !! | AATTAAGATTTCTTGTGTAT+TGG | + | chr1_1:24567526-24567545 | Msa0015180:intron | 20.0% |
| !!! | ATTCTAAAAATTTGTTGGTT+TGG | + | chr1_1:24567598-24567617 | Msa0015180:intron | 20.0% |
| !! | AAGCAAATAATAGAATATGA+AGG | + | chr1_1:24567720-24567739 | Msa0015180:CDS | 20.0% |
| !! | AGCAAATAATAGAATATGAA+GGG | + | chr1_1:24567721-24567740 | Msa0015180:CDS | 20.0% |
| !! | TAATTGTGTTTGTAACATAA+AGG | - | chr1_1:24567014-24567033 | None:intergenic | 20.0% |
| !! | TTATGTTACAAACACAATTA+TGG | + | chr1_1:24567014-24567033 | Msa0015180:intron | 20.0% |
| !! | AATTAAGATTTCTTGTGTAT+TGG | + | chr1_1:24567526-24567545 | Msa0015180:intron | 20.0% |
| !!! | ATTCTAAAAATTTGTTGGTT+TGG | + | chr1_1:24567598-24567617 | Msa0015180:intron | 20.0% |
| !! | AAGCAAATAATAGAATATGA+AGG | + | chr1_1:24567720-24567739 | Msa0015180:CDS | 20.0% |
| !! | AGCAAATAATAGAATATGAA+GGG | + | chr1_1:24567721-24567740 | Msa0015180:CDS | 20.0% |
| !!! | TTTTTTCCTGAAATTCTTCT+AGG | + | chr1_1:24566582-24566601 | Msa0015180:CDS | 25.0% |
| ! | GTGTTTGAACAAAATTACTT+TGG | - | chr1_1:24566644-24566663 | None:intergenic | 25.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_1:24566757-24566776 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_1:24566757-24566776 | Msa0015180:CDS | 25.0% |
| !!! | TCATTTCAAGCTATTTCTAA+TGG | + | chr1_1:24567109-24567128 | Msa0015180:intron | 25.0% |
| ! | TTGAAATTGTTGAAAGACTA+TGG | + | chr1_1:24567358-24567377 | Msa0015180:CDS | 25.0% |
| ! | ATAATAGAATATGAAGGGTT+TGG | + | chr1_1:24567726-24567745 | Msa0015180:CDS | 25.0% |
| !!! | TTTTTTCCTGAAATTCTTCT+AGG | + | chr1_1:24566582-24566601 | Msa0015180:CDS | 25.0% |
| ! | GTGTTTGAACAAAATTACTT+TGG | - | chr1_1:24566644-24566663 | None:intergenic | 25.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_1:24566757-24566776 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_1:24566757-24566776 | Msa0015180:CDS | 25.0% |
| !!! | TCATTTCAAGCTATTTCTAA+TGG | + | chr1_1:24567109-24567128 | Msa0015180:intron | 25.0% |
| ! | TTGAAATTGTTGAAAGACTA+TGG | + | chr1_1:24567358-24567377 | Msa0015180:CDS | 25.0% |
| ! | ATAATAGAATATGAAGGGTT+TGG | + | chr1_1:24567726-24567745 | Msa0015180:CDS | 25.0% |
| !!! | TTCTTCTAGGTGATGTTTTT+TGG | + | chr1_1:24566595-24566614 | Msa0015180:CDS | 30.0% |
| !!! | TCTTCTAGGTGATGTTTTTT+GGG | + | chr1_1:24566596-24566615 | Msa0015180:CDS | 30.0% |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_1:24566681-24566700 | None:intergenic | 30.0% |
| ! | GCTACTTTATTTCTCTCTAA+AGG | - | chr1_1:24566810-24566829 | None:intergenic | 30.0% |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_1:24566859-24566878 | Msa0015180:CDS | 30.0% | |
| ! | ATATATACTTTGGTTCCATG+AGG | - | chr1_1:24566930-24566949 | None:intergenic | 30.0% |
| CACATCGTATATAGAAATTG+CGG | + | chr1_1:24566959-24566978 | Msa0015180:intron | 30.0% | |
| !! | TTTCAAGCTATTTCTAATGG+TGG | + | chr1_1:24567112-24567131 | Msa0015180:intron | 30.0% |
| CTACAGAATTATTATCTGTC+TGG | - | chr1_1:24567171-24567190 | None:intergenic | 30.0% | |
| ATAGAATCAATTCCAGATGT+AGG | - | chr1_1:24567328-24567347 | None:intergenic | 30.0% | |
| !!! | TTCTTCTAGGTGATGTTTTT+TGG | + | chr1_1:24566595-24566614 | Msa0015180:CDS | 30.0% |
| !!! | TCTTCTAGGTGATGTTTTTT+GGG | + | chr1_1:24566596-24566615 | Msa0015180:CDS | 30.0% |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_1:24566681-24566700 | None:intergenic | 30.0% |
| ! | GCTACTTTATTTCTCTCTAA+AGG | - | chr1_1:24566810-24566829 | None:intergenic | 30.0% |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_1:24566859-24566878 | Msa0015180:CDS | 30.0% | |
| ! | ATATATACTTTGGTTCCATG+AGG | - | chr1_1:24566930-24566949 | None:intergenic | 30.0% |
| CACATCGTATATAGAAATTG+CGG | + | chr1_1:24566959-24566978 | Msa0015180:intron | 30.0% | |
| !! | TTTCAAGCTATTTCTAATGG+TGG | + | chr1_1:24567112-24567131 | Msa0015180:intron | 30.0% |
| CTACAGAATTATTATCTGTC+TGG | - | chr1_1:24567171-24567190 | None:intergenic | 30.0% | |
| ATAGAATCAATTCCAGATGT+AGG | - | chr1_1:24567328-24567347 | None:intergenic | 30.0% | |
| ACATCACCTAGAAGAATTTC+AGG | - | chr1_1:24566591-24566610 | None:intergenic | 35.0% | |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_1:24566627-24566646 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_1:24566675-24566694 | None:intergenic | 35.0% |
| ! | GGGAACAAAGTTCTCTAAAA+GGG | + | chr1_1:24566730-24566749 | Msa0015180:CDS | 35.0% |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_1:24566775-24566794 | Msa0015180:CDS | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_1:24567205-24567224 | Msa0015180:CDS | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_1:24567399-24567418 | Msa0015180:CDS | 35.0% |
| ACATCACCTAGAAGAATTTC+AGG | - | chr1_1:24566591-24566610 | None:intergenic | 35.0% | |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_1:24566627-24566646 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_1:24566675-24566694 | None:intergenic | 35.0% |
| ! | GGGAACAAAGTTCTCTAAAA+GGG | + | chr1_1:24566730-24566749 | Msa0015180:CDS | 35.0% |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_1:24566775-24566794 | Msa0015180:CDS | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_1:24567205-24567224 | Msa0015180:CDS | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_1:24567399-24567418 | Msa0015180:CDS | 35.0% |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_1:24566669-24566688 | None:intergenic | 40.0% |
| TCAATATAGAGACCAACCCA+AGG | + | chr1_1:24566698-24566717 | Msa0015180:CDS | 40.0% | |
| !!! | ACCAACCCAAGGTTAGTTTT+GGG | + | chr1_1:24566709-24566728 | Msa0015180:CDS | 40.0% |
| TGTTCCCCAAAACTAACCTT+GGG | - | chr1_1:24566717-24566736 | None:intergenic | 40.0% | |
| TTGTTCCCCAAAACTAACCT+TGG | - | chr1_1:24566718-24566737 | None:intergenic | 40.0% | |
| GGGGAACAAAGTTCTCTAAA+AGG | + | chr1_1:24566729-24566748 | Msa0015180:CDS | 40.0% | |
| ACAAACACAATTATGGTCGC+AGG | + | chr1_1:24567021-24567040 | Msa0015180:intron | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_1:24567186-24567205 | Msa0015180:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_1:24567197-24567216 | Msa0015180:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_1:24567222-24567241 | Msa0015180:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_1:24567227-24567246 | Msa0015180:CDS | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_1:24567322-24567341 | None:intergenic | 40.0% | |
| !!! | GCAGGAGTTGTTTTTAGTCT+TGG | + | chr1_1:24567417-24567436 | Msa0015180:CDS | 40.0% |
| AGTCTTGGAGATAGAATCTG+AGG | + | chr1_1:24567432-24567451 | Msa0015180:CDS | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_1:24567612-24567631 | Msa0015180:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_1:24567623-24567642 | Msa0015180:intron | 40.0% | |
| AGGAACTGATGTGGATCAAA+AGG | + | chr1_1:24567632-24567651 | Msa0015180:CDS | 40.0% | |
| TTTGCTTATTGGAACCTTCC+TGG | - | chr1_1:24567707-24567726 | None:intergenic | 40.0% | |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_1:24566669-24566688 | None:intergenic | 40.0% |
| TCAATATAGAGACCAACCCA+AGG | + | chr1_1:24566698-24566717 | Msa0015180:CDS | 40.0% | |
| !!! | ACCAACCCAAGGTTAGTTTT+GGG | + | chr1_1:24566709-24566728 | Msa0015180:CDS | 40.0% |
| TGTTCCCCAAAACTAACCTT+GGG | - | chr1_1:24566717-24566736 | None:intergenic | 40.0% | |
| TTGTTCCCCAAAACTAACCT+TGG | - | chr1_1:24566718-24566737 | None:intergenic | 40.0% | |
| GGGGAACAAAGTTCTCTAAA+AGG | + | chr1_1:24566729-24566748 | Msa0015180:CDS | 40.0% | |
| ACAAACACAATTATGGTCGC+AGG | + | chr1_1:24567021-24567040 | Msa0015180:intron | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_1:24567186-24567205 | Msa0015180:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_1:24567197-24567216 | Msa0015180:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_1:24567222-24567241 | Msa0015180:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_1:24567227-24567246 | Msa0015180:CDS | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_1:24567322-24567341 | None:intergenic | 40.0% | |
| !!! | GCAGGAGTTGTTTTTAGTCT+TGG | + | chr1_1:24567417-24567436 | Msa0015180:CDS | 40.0% |
| AGTCTTGGAGATAGAATCTG+AGG | + | chr1_1:24567432-24567451 | Msa0015180:CDS | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_1:24567612-24567631 | Msa0015180:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_1:24567623-24567642 | Msa0015180:intron | 40.0% | |
| AGGAACTGATGTGGATCAAA+AGG | + | chr1_1:24567632-24567651 | Msa0015180:CDS | 40.0% | |
| TTTGCTTATTGGAACCTTCC+TGG | - | chr1_1:24567707-24567726 | None:intergenic | 40.0% | |
| !!! | GACCAACCCAAGGTTAGTTT+TGG | + | chr1_1:24566708-24566727 | Msa0015180:CDS | 45.0% |
| !!! | CCAACCCAAGGTTAGTTTTG+GGG | + | chr1_1:24566710-24566729 | Msa0015180:CDS | 45.0% |
| GCAGAATGTGAAAGAGAACG+TGG | + | chr1_1:24566828-24566847 | Msa0015180:CDS | 45.0% | |
| TTACATGCAGTGCTACCTCA+TGG | + | chr1_1:24566912-24566931 | Msa0015180:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_1:24567216-24567235 | Msa0015180:CDS | 45.0% | |
| GAGCACTAGATGAACTTGAG+TGG | + | chr1_1:24567664-24567683 | Msa0015180:CDS | 45.0% | |
| GAAGCTTCATTCTCATGTCC+AGG | + | chr1_1:24567686-24567705 | Msa0015180:CDS | 45.0% | |
| CTTCATTCTCATGTCCAGGA+AGG | + | chr1_1:24567690-24567709 | Msa0015180:CDS | 45.0% | |
| !!! | GACCAACCCAAGGTTAGTTT+TGG | + | chr1_1:24566708-24566727 | Msa0015180:CDS | 45.0% |
| !!! | CCAACCCAAGGTTAGTTTTG+GGG | + | chr1_1:24566710-24566729 | Msa0015180:CDS | 45.0% |
| GCAGAATGTGAAAGAGAACG+TGG | + | chr1_1:24566828-24566847 | Msa0015180:CDS | 45.0% | |
| TTACATGCAGTGCTACCTCA+TGG | + | chr1_1:24566912-24566931 | Msa0015180:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_1:24567216-24567235 | Msa0015180:CDS | 45.0% | |
| GAGCACTAGATGAACTTGAG+TGG | + | chr1_1:24567664-24567683 | Msa0015180:CDS | 45.0% | |
| GAAGCTTCATTCTCATGTCC+AGG | + | chr1_1:24567686-24567705 | Msa0015180:CDS | 45.0% | |
| CTTCATTCTCATGTCCAGGA+AGG | + | chr1_1:24567690-24567709 | Msa0015180:CDS | 45.0% | |
| !!! | CAAATATATTTTTTAAAAAA+AGG | - | chr1_1:24567470-24567489 | None:intergenic | 5.0% |
| !!! | CAAATATATTTTTTAAAAAA+AGG | - | chr1_1:24567470-24567489 | None:intergenic | 5.0% |
| CCCCAAAACTAACCTTGGGT+TGG | - | chr1_1:24566713-24566732 | None:intergenic | 50.0% | |
| ! | AGAGTGCCATGTCCTACATC+TGG | + | chr1_1:24567313-24567332 | Msa0015180:CDS | 50.0% |
| CCCCAAAACTAACCTTGGGT+TGG | - | chr1_1:24566713-24566732 | None:intergenic | 50.0% | |
| ! | AGAGTGCCATGTCCTACATC+TGG | + | chr1_1:24567313-24567332 | Msa0015180:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 24566573 | 24567752 | 24566573 | ID=Msa0015180;Name=Msa0015180 |
| chr1_1 | mRNA | 24566573 | 24567752 | 24566573 | ID=Msa0015180-mRNA-1;Parent=Msa0015180;Name=Msa0015180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|258 |
| chr1_1 | exon | 24566573 | 24566941 | 24566573 | ID=Msa0015180-mRNA-1:exon:8406;Parent=Msa0015180-mRNA-1 |
| chr1_1 | exon | 24567172 | 24567453 | 24567172 | ID=Msa0015180-mRNA-1:exon:8407;Parent=Msa0015180-mRNA-1 |
| chr1_1 | exon | 24567627 | 24567752 | 24567627 | ID=Msa0015180-mRNA-1:exon:8408;Parent=Msa0015180-mRNA-1 |
| chr1_1 | CDS | 24566573 | 24566941 | 24566573 | ID=Msa0015180-mRNA-1:cds;Parent=Msa0015180-mRNA-1 |
| chr1_1 | CDS | 24567172 | 24567453 | 24567172 | ID=Msa0015180-mRNA-1:cds;Parent=Msa0015180-mRNA-1 |
| chr1_1 | CDS | 24567627 | 24567752 | 24567627 | ID=Msa0015180-mRNA-1:cds;Parent=Msa0015180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
