Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155210 | XP_013466953.1 | 92.208 | 231 | 18 | 0 | 1 | 231 | 1 | 231 | 3.61e-148 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155210 | sp|Q9FIX5|BH092_ARATH | 36.486 | 222 | 128 | 6 | 14 | 231 | 16 | 228 | 8.84e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155210 | A0A072VG47 | 92.208 | 231 | 18 | 0 | 1 | 231 | 1 | 231 | 1.72e-148 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0155210 | 0.810067 | 1.385886e-50 | -8.615850e-47 |
| Msa0004480 | Msa0155210 | 0.805550 | 1.264625e-49 | -8.615850e-47 |
| Msa0011050 | Msa0155210 | 0.810709 | 1.007218e-50 | -8.615850e-47 |
| Msa0015180 | Msa0155210 | 0.812547 | 4.012519e-51 | -8.615850e-47 |
| Msa0048390 | Msa0155210 | 0.819433 | 1.164569e-52 | -8.615850e-47 |
| Msa0060070 | Msa0155210 | 0.834903 | 2.289529e-56 | -8.615850e-47 |
| Msa0061500 | Msa0155210 | 0.812646 | 3.817683e-51 | -8.615850e-47 |
| Msa0064140 | Msa0155210 | 0.894738 | 1.858479e-75 | -8.615850e-47 |
| Msa0119440 | Msa0155210 | 0.806240 | 9.054026e-50 | -8.615850e-47 |
| Msa0136630 | Msa0155210 | 0.826704 | 2.344704e-54 | -8.615850e-47 |
| Msa0151220 | Msa0155210 | 0.825332 | 4.966879e-54 | -8.615850e-47 |
| Msa0152560 | Msa0155210 | 0.838931 | 2.144308e-57 | -8.615850e-47 |
| Msa0155210 | Msa0162690 | 0.813942 | 1.982320e-51 | -8.615850e-47 |
| Msa0155210 | Msa0187310 | 0.810007 | 1.427783e-50 | -8.615850e-47 |
| Msa0155210 | Msa0201570 | 0.800397 | 1.469099e-48 | -8.615850e-47 |
| Msa0155210 | Msa0259440 | 0.803450 | 3.466230e-49 | -8.615850e-47 |
| Msa0155210 | Msa0259580 | 0.802984 | 4.327242e-49 | -8.615850e-47 |
| Msa0155210 | Msa0302730 | 0.804182 | 2.442324e-49 | -8.615850e-47 |
| Msa0155210 | Msa0305620 | 0.820907 | 5.351517e-53 | -8.615850e-47 |
| Msa0155210 | Msa0364790 | 0.836925 | 7.029700e-57 | -8.615850e-47 |
| Msa0155210 | Msa0377840 | 0.811892 | 5.577110e-51 | -8.615850e-47 |
| Msa0155210 | Msa0380600 | 0.827647 | 1.394164e-54 | -8.615850e-47 |
| Msa0155210 | Msa0412260 | 0.811387 | 7.182823e-51 | -8.615850e-47 |
| Msa0155210 | Msa0426560 | 0.822727 | 2.029248e-53 | -8.615850e-47 |
| Msa0155210 | Msa0430240 | 0.823344 | 1.457320e-53 | -8.615850e-47 |
| Msa0155210 | Msa0456770 | 0.828353 | 9.422695e-55 | -8.615850e-47 |
| Msa0155210 | Msa0473140 | 0.820247 | 7.588674e-53 | -8.615850e-47 |
| Msa0155210 | Msa0517610 | 0.814456 | 1.526823e-51 | -8.615850e-47 |
| Msa0155210 | Msa0524440 | 0.801990 | 6.936482e-49 | -8.615850e-47 |
| Msa0155210 | Msa0542530 | 0.823001 | 1.752152e-53 | -8.615850e-47 |
| Msa0155210 | Msa0558390 | 0.802253 | 6.125265e-49 | -8.615850e-47 |
| Msa0155210 | Msa0584600 | 0.806473 | 8.087077e-50 | -8.615850e-47 |
| Msa0155210 | Msa0772740 | 0.812303 | 4.537801e-51 | -8.615850e-47 |
| Msa0155210 | Msa0894710 | 0.803084 | 4.126755e-49 | -8.615850e-47 |
| Msa0155210 | Msa0921420 | 0.801550 | 8.540562e-49 | -8.615850e-47 |
| Msa0155210 | Msa0968050 | 0.820144 | 8.010098e-53 | -8.615850e-47 |
| Msa0155210 | Msa1108720 | 0.803533 | 3.331719e-49 | -8.615850e-47 |
| Msa0155210 | Msa1214170 | 0.821863 | 3.220867e-53 | -8.615850e-47 |
| Msa0155210 | Msa1259860 | 0.808578 | 2.891662e-50 | -8.615850e-47 |
| Msa0155210 | Msa1260060 | 0.836425 | 9.428481e-57 | -8.615850e-47 |
| Msa0155210 | Msa1260680 | 0.821114 | 4.795369e-53 | -8.615850e-47 |
| Msa0155210 | Msa1280150 | 0.803745 | 3.009940e-49 | -8.615850e-47 |
| Msa0155210 | Msa1360020 | 0.819232 | 1.293833e-52 | -8.615850e-47 |
| Msa0155210 | Msa1367530 | 0.804991 | 1.656020e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155210 | MtrunA17_Chr1g0165831 | 92.208 | 231 | 18 | 0 | 1 | 231 | 1 | 231 | 3.32e-152 | 423 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155210 | AT5G43650.1 | 36.486 | 222 | 128 | 6 | 14 | 231 | 16 | 228 | 8.99e-35 | 125 |
| Msa0155210 | AT5G43650.2 | 35.407 | 209 | 122 | 6 | 14 | 218 | 16 | 215 | 2.47e-30 | 112 |
Find 37 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCACCTAGAAGACTTTC+AGG | 0.237157 | 1_4:-20420252 | None:intergenic |
| CTTGTTCATGTTATTTGAAT+TGG | 0.244140 | 1_4:-20420418 | None:intergenic |
| GACCAACCCAAGGTTAGTTT+TGG | 0.266186 | 1_4:+20420372 | Msa0155210:CDS |
| TGAACAAAAGCACTTAGATT+TGG | 0.329794 | 1_4:-20420342 | None:intergenic |
| CTCAAATTGTTGAAAGACTA+TGG | 0.337935 | 1_4:+20421021 | Msa0155210:CDS |
| ACAAGGATGCAAAGAGGAAT+TGG | 0.356536 | 1_4:+20420885 | Msa0155210:CDS |
| GAGAGCACTTGCACTGTGTT+TGG | 0.396041 | 1_4:+20421301 | Msa0155210:CDS |
| AGAGTCCCATGTCCTACATC+TGG | 0.437447 | 1_4:+20420976 | Msa0155210:CDS |
| TTGGTTTGGTGAAAGATTGC+AGG | 0.448525 | 1_4:+20421254 | Msa0155210:intron |
| TGTTCCCCAAAACTAACCTT+GGG | 0.455941 | 1_4:-20420378 | None:intergenic |
| CTTTGGTTTGTAGCTAAAAG+AGG | 0.465381 | 1_4:-20420288 | None:intergenic |
| GGGGAACAAAGTTCTCGAAA+AGG | 0.474729 | 1_4:+20420393 | Msa0155210:CDS |
| TGCAGGAACTGATGTGGAAA+AGG | 0.474929 | 1_4:+20421271 | Msa0155210:CDS |
| GGGAACAAAGTTCTCGAAAA+GGG | 0.478191 | 1_4:+20420394 | Msa0155210:CDS |
| TTGTTCCCCAAAACTAACCT+TGG | 0.481166 | 1_4:-20420379 | None:intergenic |
| GTGTTTGAACAAAACAACTT+TGG | 0.492561 | 1_4:-20420305 | None:intergenic |
| TGTAGTACAAACAGCAGCTA+AGG | 0.514214 | 1_4:+20420849 | Msa0155210:CDS |
| CTTAGATTTGGTGTAGGACA+AGG | 0.518149 | 1_4:-20420330 | None:intergenic |
| GTAGAATCAATTCCAGATGT+AGG | 0.538154 | 1_4:-20420988 | None:intergenic |
| ACTACTTTATTTCTCTCTAG+AGG | 0.542226 | 1_4:-20420471 | None:intergenic |
| TTACATGCAGTGCTACCTCA+TGG | 0.551125 | 1_4:+20420576 | Msa0155210:CDS |
| AAGGAAATTCAAAGGCTACA+AGG | 0.552769 | 1_4:+20420868 | Msa0155210:CDS |
| CCCCAAAACTAACCTTGGGT+TGG | 0.563725 | 1_4:-20420374 | None:intergenic |
| ATTCAAATAACATGAACAAG+AGG | 0.578747 | 1_4:+20420421 | Msa0155210:CDS |
| AGTCTTGGAGATAGAATCTG+AGG | 0.586101 | 1_4:+20421095 | Msa0155210:CDS |
| ACATGATTAGTGAAAGAATG+AGG | 0.598991 | 1_4:+20420523 | Msa0155210:CDS |
| TCAATTCCAGATGTAGGACA+TGG | 0.602329 | 1_4:-20420982 | None:intergenic |
| AAAGCACTTAGATTTGGTGT+AGG | 0.616910 | 1_4:-20420336 | None:intergenic |
| TCTAGAGAGAAATAAAGTAG+TGG | 0.617344 | 1_4:+20420473 | Msa0155210:CDS |
| CAGCAGCTAAGGAAATTCAA+AGG | 0.623684 | 1_4:+20420860 | Msa0155210:CDS |
| GATGCAAAGAGGAATTGGAA+AGG | 0.633307 | 1_4:+20420890 | Msa0155210:CDS |
| CAATTCCAGATGTAGGACAT+GGG | 0.675336 | 1_4:-20420981 | None:intergenic |
| GTGGAATGTGAAAGAGAACG+TGG | 0.683740 | 1_4:+20420492 | Msa0155210:CDS |
| ATATATACTTTGGTTCCATG+AGG | 0.684445 | 1_4:-20420591 | None:intergenic |
| AAAGATTGCAGGAACTGATG+TGG | 0.688766 | 1_4:+20421265 | Msa0155210:intron |
| AAGGCTACAAGGATGCAAAG+AGG | 0.691456 | 1_4:+20420879 | Msa0155210:CDS |
| TCAATATAGAGACCAACCCA+AGG | 0.710841 | 1_4:+20420362 | Msa0155210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATATTTTTTAAAAT+AGG | - | chr1_4:20421133-20421152 | None:intergenic | 0.0% |
| !!! | AAATATATATTTTTTAAAAT+AGG | - | chr1_4:20421133-20421152 | None:intergenic | 0.0% |
| !! | TCATAAATATATGTTAAATA+TGG | - | chr1_4:20420724-20420743 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTTTCTTTTA+TGG | + | chr1_4:20420809-20420828 | Msa0155210:intron | 10.0% |
| !!! | TAATTTTTTAAAACTATACA+AGG | + | chr1_4:20421156-20421175 | Msa0155210:intron | 10.0% |
| !! | TCATAAATATATGTTAAATA+TGG | - | chr1_4:20420724-20420743 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTTTCTTTTA+TGG | + | chr1_4:20420809-20420828 | Msa0155210:intron | 10.0% |
| !!! | TAATTTTTTAAAACTATACA+AGG | + | chr1_4:20421156-20421175 | Msa0155210:intron | 10.0% |
| !!! | GAATGTTTTTATATATACTT+TGG | - | chr1_4:20420604-20420623 | None:intergenic | 15.0% |
| !!! | AAAAAAGTGCTTATTTTAAA+AGG | - | chr1_4:20420748-20420767 | None:intergenic | 15.0% |
| !!! | GAATGTTTTTATATATACTT+TGG | - | chr1_4:20420604-20420623 | None:intergenic | 15.0% |
| !!! | AAAAAAGTGCTTATTTTAAA+AGG | - | chr1_4:20420748-20420767 | None:intergenic | 15.0% |
| !! | TAATTGTGTTTGTAACATAA+AGG | - | chr1_4:20420678-20420697 | None:intergenic | 20.0% |
| !! | TTATGTTACAAACACAATTA+TGG | + | chr1_4:20420678-20420697 | Msa0155210:intron | 20.0% |
| !! | TAATTGTGTTTGTAACATAA+AGG | - | chr1_4:20420678-20420697 | None:intergenic | 20.0% |
| !! | TTATGTTACAAACACAATTA+TGG | + | chr1_4:20420678-20420697 | Msa0155210:intron | 20.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_4:20420421-20420440 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_4:20420421-20420440 | Msa0155210:CDS | 25.0% |
| !!! | TCATTTCAAGCTATTTCTAA+TGG | + | chr1_4:20420773-20420792 | Msa0155210:intron | 25.0% |
| ! | TGTTTATGCTAAAAATGTGT+TGG | + | chr1_4:20421235-20421254 | Msa0155210:intron | 25.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_4:20420421-20420440 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_4:20420421-20420440 | Msa0155210:CDS | 25.0% |
| !!! | TCATTTCAAGCTATTTCTAA+TGG | + | chr1_4:20420773-20420792 | Msa0155210:intron | 25.0% |
| ! | TGTTTATGCTAAAAATGTGT+TGG | + | chr1_4:20421235-20421254 | Msa0155210:intron | 25.0% |
| !!! | TTTTTTCCTGAAAGTCTTCT+AGG | + | chr1_4:20420246-20420265 | Msa0155210:CDS | 30.0% |
| !!! | TCTTCTAGGTGATGTTTTTT+GGG | + | chr1_4:20420260-20420279 | Msa0155210:CDS | 30.0% |
| GTGTTTGAACAAAACAACTT+TGG | - | chr1_4:20420308-20420327 | None:intergenic | 30.0% | |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_4:20420345-20420364 | None:intergenic | 30.0% |
| ! | ACTACTTTATTTCTCTCTAG+AGG | - | chr1_4:20420474-20420493 | None:intergenic | 30.0% |
| TCTAGAGAGAAATAAAGTAG+TGG | + | chr1_4:20420473-20420492 | Msa0155210:CDS | 30.0% | |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_4:20420523-20420542 | Msa0155210:CDS | 30.0% | |
| ! | ATATATACTTTGGTTCCATG+AGG | - | chr1_4:20420594-20420613 | None:intergenic | 30.0% |
| CACATCGTATATAGAAATTG+CGG | + | chr1_4:20420623-20420642 | Msa0155210:intron | 30.0% | |
| !! | TTTCAAGCTATTTCTAATGG+TGG | + | chr1_4:20420776-20420795 | Msa0155210:intron | 30.0% |
| CTCAAATTGTTGAAAGACTA+TGG | + | chr1_4:20421021-20421040 | Msa0155210:CDS | 30.0% | |
| !! | ATGCTAAAAATGTGTTGGTT+TGG | + | chr1_4:20421240-20421259 | Msa0155210:intron | 30.0% |
| !!! | TTTTTTCCTGAAAGTCTTCT+AGG | + | chr1_4:20420246-20420265 | Msa0155210:CDS | 30.0% |
| !!! | TCTTCTAGGTGATGTTTTTT+GGG | + | chr1_4:20420260-20420279 | Msa0155210:CDS | 30.0% |
| GTGTTTGAACAAAACAACTT+TGG | - | chr1_4:20420308-20420327 | None:intergenic | 30.0% | |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_4:20420345-20420364 | None:intergenic | 30.0% |
| ! | ACTACTTTATTTCTCTCTAG+AGG | - | chr1_4:20420474-20420493 | None:intergenic | 30.0% |
| TCTAGAGAGAAATAAAGTAG+TGG | + | chr1_4:20420473-20420492 | Msa0155210:CDS | 30.0% | |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_4:20420523-20420542 | Msa0155210:CDS | 30.0% | |
| ! | ATATATACTTTGGTTCCATG+AGG | - | chr1_4:20420594-20420613 | None:intergenic | 30.0% |
| CACATCGTATATAGAAATTG+CGG | + | chr1_4:20420623-20420642 | Msa0155210:intron | 30.0% | |
| !! | TTTCAAGCTATTTCTAATGG+TGG | + | chr1_4:20420776-20420795 | Msa0155210:intron | 30.0% |
| CTCAAATTGTTGAAAGACTA+TGG | + | chr1_4:20421021-20421040 | Msa0155210:CDS | 30.0% | |
| !! | ATGCTAAAAATGTGTTGGTT+TGG | + | chr1_4:20421240-20421259 | Msa0155210:intron | 30.0% |
| !!! | GTCTTCTAGGTGATGTTTTT+TGG | + | chr1_4:20420259-20420278 | Msa0155210:CDS | 35.0% |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_4:20420291-20420310 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_4:20420339-20420358 | None:intergenic | 35.0% |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_4:20420439-20420458 | Msa0155210:CDS | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_4:20420868-20420887 | Msa0155210:CDS | 35.0% | |
| GTAGAATCAATTCCAGATGT+AGG | - | chr1_4:20420991-20421010 | None:intergenic | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_4:20421062-20421081 | Msa0155210:CDS | 35.0% |
| !!! | GTCTTCTAGGTGATGTTTTT+TGG | + | chr1_4:20420259-20420278 | Msa0155210:CDS | 35.0% |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_4:20420291-20420310 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_4:20420339-20420358 | None:intergenic | 35.0% |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_4:20420439-20420458 | Msa0155210:CDS | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_4:20420868-20420887 | Msa0155210:CDS | 35.0% | |
| GTAGAATCAATTCCAGATGT+AGG | - | chr1_4:20420991-20421010 | None:intergenic | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_4:20421062-20421081 | Msa0155210:CDS | 35.0% |
| ACATCACCTAGAAGACTTTC+AGG | - | chr1_4:20420255-20420274 | None:intergenic | 40.0% | |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_4:20420333-20420352 | None:intergenic | 40.0% |
| TCAATATAGAGACCAACCCA+AGG | + | chr1_4:20420362-20420381 | Msa0155210:CDS | 40.0% | |
| !!! | ACCAACCCAAGGTTAGTTTT+GGG | + | chr1_4:20420373-20420392 | Msa0155210:CDS | 40.0% |
| TGTTCCCCAAAACTAACCTT+GGG | - | chr1_4:20420381-20420400 | None:intergenic | 40.0% | |
| TTGTTCCCCAAAACTAACCT+TGG | - | chr1_4:20420382-20420401 | None:intergenic | 40.0% | |
| GGGAACAAAGTTCTCGAAAA+GGG | + | chr1_4:20420394-20420413 | Msa0155210:CDS | 40.0% | |
| ACAAACACAATTATGGTCGC+AGG | + | chr1_4:20420685-20420704 | Msa0155210:intron | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_4:20420849-20420868 | Msa0155210:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_4:20420860-20420879 | Msa0155210:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_4:20420885-20420904 | Msa0155210:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_4:20420890-20420909 | Msa0155210:CDS | 40.0% | |
| CAATTCCAGATGTAGGACAT+GGG | - | chr1_4:20420984-20421003 | None:intergenic | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_4:20420985-20421004 | None:intergenic | 40.0% | |
| !!! | GCAGGAGTTGTTTTTAGTCT+TGG | + | chr1_4:20421080-20421099 | Msa0155210:CDS | 40.0% |
| AGTCTTGGAGATAGAATCTG+AGG | + | chr1_4:20421095-20421114 | Msa0155210:CDS | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_4:20421254-20421273 | Msa0155210:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_4:20421265-20421284 | Msa0155210:intron | 40.0% | |
| ACATCACCTAGAAGACTTTC+AGG | - | chr1_4:20420255-20420274 | None:intergenic | 40.0% | |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_4:20420333-20420352 | None:intergenic | 40.0% |
| TCAATATAGAGACCAACCCA+AGG | + | chr1_4:20420362-20420381 | Msa0155210:CDS | 40.0% | |
| !!! | ACCAACCCAAGGTTAGTTTT+GGG | + | chr1_4:20420373-20420392 | Msa0155210:CDS | 40.0% |
| TGTTCCCCAAAACTAACCTT+GGG | - | chr1_4:20420381-20420400 | None:intergenic | 40.0% | |
| TTGTTCCCCAAAACTAACCT+TGG | - | chr1_4:20420382-20420401 | None:intergenic | 40.0% | |
| GGGAACAAAGTTCTCGAAAA+GGG | + | chr1_4:20420394-20420413 | Msa0155210:CDS | 40.0% | |
| ACAAACACAATTATGGTCGC+AGG | + | chr1_4:20420685-20420704 | Msa0155210:intron | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_4:20420849-20420868 | Msa0155210:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_4:20420860-20420879 | Msa0155210:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_4:20420885-20420904 | Msa0155210:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_4:20420890-20420909 | Msa0155210:CDS | 40.0% | |
| CAATTCCAGATGTAGGACAT+GGG | - | chr1_4:20420984-20421003 | None:intergenic | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_4:20420985-20421004 | None:intergenic | 40.0% | |
| !!! | GCAGGAGTTGTTTTTAGTCT+TGG | + | chr1_4:20421080-20421099 | Msa0155210:CDS | 40.0% |
| AGTCTTGGAGATAGAATCTG+AGG | + | chr1_4:20421095-20421114 | Msa0155210:CDS | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_4:20421254-20421273 | Msa0155210:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_4:20421265-20421284 | Msa0155210:intron | 40.0% | |
| !!! | GACCAACCCAAGGTTAGTTT+TGG | + | chr1_4:20420372-20420391 | Msa0155210:CDS | 45.0% |
| !!! | CCAACCCAAGGTTAGTTTTG+GGG | + | chr1_4:20420374-20420393 | Msa0155210:CDS | 45.0% |
| GGGGAACAAAGTTCTCGAAA+AGG | + | chr1_4:20420393-20420412 | Msa0155210:CDS | 45.0% | |
| GTGGAATGTGAAAGAGAACG+TGG | + | chr1_4:20420492-20420511 | Msa0155210:CDS | 45.0% | |
| TTACATGCAGTGCTACCTCA+TGG | + | chr1_4:20420576-20420595 | Msa0155210:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_4:20420879-20420898 | Msa0155210:CDS | 45.0% | |
| TGCAGGAACTGATGTGGAAA+AGG | + | chr1_4:20421271-20421290 | Msa0155210:CDS | 45.0% | |
| !!! | GACCAACCCAAGGTTAGTTT+TGG | + | chr1_4:20420372-20420391 | Msa0155210:CDS | 45.0% |
| !!! | CCAACCCAAGGTTAGTTTTG+GGG | + | chr1_4:20420374-20420393 | Msa0155210:CDS | 45.0% |
| GGGGAACAAAGTTCTCGAAA+AGG | + | chr1_4:20420393-20420412 | Msa0155210:CDS | 45.0% | |
| GTGGAATGTGAAAGAGAACG+TGG | + | chr1_4:20420492-20420511 | Msa0155210:CDS | 45.0% | |
| TTACATGCAGTGCTACCTCA+TGG | + | chr1_4:20420576-20420595 | Msa0155210:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_4:20420879-20420898 | Msa0155210:CDS | 45.0% | |
| TGCAGGAACTGATGTGGAAA+AGG | + | chr1_4:20421271-20421290 | Msa0155210:CDS | 45.0% | |
| CCCCAAAACTAACCTTGGGT+TGG | - | chr1_4:20420377-20420396 | None:intergenic | 50.0% | |
| AGAGTCCCATGTCCTACATC+TGG | + | chr1_4:20420976-20420995 | Msa0155210:CDS | 50.0% | |
| !! | GAGAGCACTTGCACTGTGTT+TGG | + | chr1_4:20421301-20421320 | Msa0155210:CDS | 50.0% |
| CCCCAAAACTAACCTTGGGT+TGG | - | chr1_4:20420377-20420396 | None:intergenic | 50.0% | |
| AGAGTCCCATGTCCTACATC+TGG | + | chr1_4:20420976-20420995 | Msa0155210:CDS | 50.0% | |
| !! | GAGAGCACTTGCACTGTGTT+TGG | + | chr1_4:20421301-20421320 | Msa0155210:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 20420237 | 20421337 | 20420237 | ID=Msa0155210;Name=Msa0155210 |
| chr1_4 | mRNA | 20420237 | 20421337 | 20420237 | ID=Msa0155210-mRNA-1;Parent=Msa0155210;Name=Msa0155210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|239 |
| chr1_4 | exon | 20420237 | 20420605 | 20420237 | ID=Msa0155210-mRNA-1:exon:7426;Parent=Msa0155210-mRNA-1 |
| chr1_4 | exon | 20420835 | 20421116 | 20420835 | ID=Msa0155210-mRNA-1:exon:7427;Parent=Msa0155210-mRNA-1 |
| chr1_4 | exon | 20421269 | 20421337 | 20421269 | ID=Msa0155210-mRNA-1:exon:7428;Parent=Msa0155210-mRNA-1 |
| chr1_4 | CDS | 20420237 | 20420605 | 20420237 | ID=Msa0155210-mRNA-1:cds;Parent=Msa0155210-mRNA-1 |
| chr1_4 | CDS | 20420835 | 20421116 | 20420835 | ID=Msa0155210-mRNA-1:cds;Parent=Msa0155210-mRNA-1 |
| chr1_4 | CDS | 20421269 | 20421337 | 20421269 | ID=Msa0155210-mRNA-1:cds;Parent=Msa0155210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
