Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064140 | XP_013466953.1 | 93.774 | 257 | 16 | 0 | 1 | 257 | 1 | 257 | 6.87e-170 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064140 | sp|Q9FIX5|BH092_ARATH | 38.934 | 244 | 121 | 9 | 14 | 246 | 16 | 242 | 1.11e-38 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064140 | A0A072VG47 | 93.774 | 257 | 16 | 0 | 1 | 257 | 1 | 257 | 3.28e-170 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0064140 | 0.842259 | 2.883768e-58 | -8.615850e-47 |
| Msa0004480 | Msa0064140 | 0.814565 | 1.443874e-51 | -8.615850e-47 |
| Msa0005260 | Msa0064140 | 0.801218 | 9.987390e-49 | -8.615850e-47 |
| Msa0011050 | Msa0064140 | 0.823568 | 1.291287e-53 | -8.615850e-47 |
| Msa0015180 | Msa0064140 | 0.805387 | 1.368043e-49 | -8.615850e-47 |
| Msa0033850 | Msa0064140 | 0.801039 | 1.086404e-48 | -8.615850e-47 |
| Msa0048390 | Msa0064140 | 0.807078 | 6.024145e-50 | -8.615850e-47 |
| Msa0060070 | Msa0064140 | 0.825055 | 5.775083e-54 | -8.615850e-47 |
| Msa0061500 | Msa0064140 | 0.808234 | 3.423763e-50 | -8.615850e-47 |
| Msa0064140 | Msa0081620 | 0.807974 | 3.889580e-50 | -8.615850e-47 |
| Msa0064140 | Msa0092410 | 0.816095 | 6.598192e-52 | -8.615850e-47 |
| Msa0064140 | Msa0106530 | 0.802599 | 5.196194e-49 | -8.615850e-47 |
| Msa0064140 | Msa0117520 | 0.803512 | 3.364872e-49 | -8.615850e-47 |
| Msa0064140 | Msa0119440 | 0.802484 | 5.488213e-49 | -8.615850e-47 |
| Msa0064140 | Msa0136630 | 0.846145 | 2.609728e-59 | -8.615850e-47 |
| Msa0064140 | Msa0151220 | 0.838588 | 2.630053e-57 | -8.615850e-47 |
| Msa0064140 | Msa0152560 | 0.840038 | 1.106153e-57 | -8.615850e-47 |
| Msa0064140 | Msa0155210 | 0.894738 | 1.858479e-75 | -8.615850e-47 |
| Msa0064140 | Msa0162690 | 0.825058 | 5.763503e-54 | -8.615850e-47 |
| Msa0064140 | Msa0173960 | 0.803775 | 2.967179e-49 | -8.615850e-47 |
| Msa0064140 | Msa0187310 | 0.828822 | 7.261411e-55 | -8.615850e-47 |
| Msa0064140 | Msa0240270 | 0.814350 | 1.611177e-51 | -8.615850e-47 |
| Msa0064140 | Msa0259440 | 0.826356 | 2.837511e-54 | -8.615850e-47 |
| Msa0064140 | Msa0259580 | 0.825153 | 5.474317e-54 | -8.615850e-47 |
| Msa0064140 | Msa0264680 | 0.813380 | 2.636038e-51 | -8.615850e-47 |
| Msa0064140 | Msa0267790 | 0.803931 | 2.754263e-49 | -8.615850e-47 |
| Msa0064140 | Msa0269560 | 0.812938 | 3.295325e-51 | -8.615850e-47 |
| Msa0064140 | Msa0276430 | 0.804179 | 2.445986e-49 | -8.615850e-47 |
| Msa0064140 | Msa0277410 | 0.807010 | 6.229615e-50 | -8.615850e-47 |
| Msa0064140 | Msa0282720 | 0.810227 | 1.280306e-50 | -8.615850e-47 |
| Msa0064140 | Msa0302730 | 0.830338 | 3.106745e-55 | -8.615850e-47 |
| Msa0064140 | Msa0305620 | 0.827259 | 1.727099e-54 | -8.615850e-47 |
| Msa0064140 | Msa0364790 | 0.858843 | 6.235979e-63 | -8.615850e-47 |
| Msa0064140 | Msa0377840 | 0.828516 | 8.607609e-55 | -8.615850e-47 |
| Msa0064140 | Msa0380600 | 0.840657 | 7.622115e-58 | -8.615850e-47 |
| Msa0064140 | Msa0386010 | 0.824951 | 6.108793e-54 | -8.615850e-47 |
| Msa0064140 | Msa0408340 | 0.811935 | 5.457669e-51 | -8.615850e-47 |
| Msa0064140 | Msa0412260 | 0.846338 | 2.312806e-59 | -8.615850e-47 |
| Msa0064140 | Msa0418400 | 0.808034 | 3.775289e-50 | -8.615850e-47 |
| Msa0064140 | Msa0426560 | 0.843183 | 1.639138e-58 | -8.615850e-47 |
| Msa0064140 | Msa0430240 | 0.835859 | 1.313075e-56 | -8.615850e-47 |
| Msa0064140 | Msa0456770 | 0.859472 | 4.041014e-63 | -8.615850e-47 |
| Msa0064140 | Msa0473140 | 0.826947 | 2.050569e-54 | -8.615850e-47 |
| Msa0064140 | Msa0517610 | 0.835775 | 1.378533e-56 | -8.615850e-47 |
| Msa0064140 | Msa0524330 | 0.829580 | 4.754793e-55 | -8.615850e-47 |
| Msa0064140 | Msa0524440 | 0.847805 | 9.167650e-60 | -8.615850e-47 |
| Msa0064140 | Msa0534870 | 0.821649 | 3.607980e-53 | -8.615850e-47 |
| Msa0064140 | Msa0542530 | 0.808674 | 2.757613e-50 | -8.615850e-47 |
| Msa0064140 | Msa0558390 | 0.807607 | 4.653809e-50 | -8.615850e-47 |
| Msa0064140 | Msa0572680 | 0.800511 | 1.392772e-48 | -8.615850e-47 |
| Msa0064140 | Msa0600590 | 0.801788 | 7.633806e-49 | -8.615850e-47 |
| Msa0064140 | Msa0614920 | 0.803236 | 3.839428e-49 | -8.615850e-47 |
| Msa0064140 | Msa0631320 | 0.815938 | 7.152230e-52 | -8.615850e-47 |
| Msa0064140 | Msa0696100 | 0.806618 | 7.535922e-50 | -8.615850e-47 |
| Msa0064140 | Msa0697590 | 0.801387 | 9.225100e-49 | -8.615850e-47 |
| Msa0064140 | Msa0708310 | 0.800478 | 1.414112e-48 | -8.615850e-47 |
| Msa0064140 | Msa0769720 | 0.822810 | 1.940504e-53 | -8.615850e-47 |
| Msa0064140 | Msa0772740 | 0.802439 | 5.607748e-49 | -8.615850e-47 |
| Msa0064140 | Msa0812950 | 0.806572 | 7.705897e-50 | -8.615850e-47 |
| Msa0064140 | Msa0823540 | 0.819347 | 1.218457e-52 | -8.615850e-47 |
| Msa0064140 | Msa0862620 | 0.813600 | 2.357542e-51 | -8.615850e-47 |
| Msa0064140 | Msa0863720 | 0.831231 | 1.876653e-55 | -8.615850e-47 |
| Msa0064140 | Msa0898320 | 0.821733 | 3.451545e-53 | -8.615850e-47 |
| Msa0064140 | Msa0921420 | 0.812774 | 3.579408e-51 | -8.615850e-47 |
| Msa0064140 | Msa0968050 | 0.837425 | 5.238863e-57 | -8.615850e-47 |
| Msa0064140 | Msa1043120 | 0.828377 | 9.299938e-55 | -8.615850e-47 |
| Msa0064140 | Msa1108720 | 0.807517 | 4.862950e-50 | -8.615850e-47 |
| Msa0064140 | Msa1152410 | 0.802961 | 4.376525e-49 | -8.615850e-47 |
| Msa0064140 | Msa1158390 | 0.804925 | 1.709763e-49 | -8.615850e-47 |
| Msa0064140 | Msa1183140 | 0.820264 | 7.518425e-53 | -8.615850e-47 |
| Msa0064140 | Msa1214170 | 0.854519 | 1.166365e-61 | -8.615850e-47 |
| Msa0064140 | Msa1225100 | 0.801940 | 7.102618e-49 | -8.615850e-47 |
| Msa0064140 | Msa1225580 | 0.825646 | 4.183591e-54 | -8.615850e-47 |
| Msa0064140 | Msa1246700 | 0.824034 | 1.004100e-53 | -8.615850e-47 |
| Msa0064140 | Msa1260060 | 0.813726 | 2.212377e-51 | -8.615850e-47 |
| Msa0064140 | Msa1260680 | 0.838642 | 2.547405e-57 | -8.615850e-47 |
| Msa0064140 | Msa1272010 | 0.802531 | 5.368945e-49 | -8.615850e-47 |
| Msa0064140 | Msa1279480 | 0.816033 | 6.813050e-52 | -8.615850e-47 |
| Msa0064140 | Msa1280150 | 0.814937 | 1.194538e-51 | -8.615850e-47 |
| Msa0064140 | Msa1280170 | 0.807673 | 4.506316e-50 | -8.615850e-47 |
| Msa0064140 | Msa1285200 | 0.811446 | 6.973373e-51 | -8.615850e-47 |
| Msa0064140 | Msa1309760 | 0.800234 | 1.586041e-48 | -8.615850e-47 |
| Msa0064140 | Msa1329870 | 0.802847 | 4.619756e-49 | -8.615850e-47 |
| Msa0064140 | Msa1355510 | 0.813247 | 2.819419e-51 | -8.615850e-47 |
| Msa0064140 | Msa1355890 | 0.801351 | 9.380045e-49 | -8.615850e-47 |
| Msa0064140 | Msa1360020 | 0.848275 | 6.799511e-60 | -8.615850e-47 |
| Msa0064140 | Msa1365270 | 0.807792 | 4.251510e-50 | -8.615850e-47 |
| Msa0064140 | Msa1365610 | 0.802621 | 5.144455e-49 | -8.615850e-47 |
| Msa0064140 | Msa1367530 | 0.837936 | 3.871623e-57 | -8.615850e-47 |
| Msa0064140 | Msa1376450 | 0.820503 | 6.627783e-53 | -8.615850e-47 |
| Msa0064140 | Msa1380220 | 0.807891 | 4.049220e-50 | -8.615850e-47 |
| Msa0064140 | Msa1408050 | 0.800510 | 1.393298e-48 | -8.615850e-47 |
| Msa0064140 | Msa1424580 | 0.813358 | 2.664712e-51 | -8.615850e-47 |
| Msa0064140 | Msa1424630 | 0.815311 | 9.867700e-52 | -8.615850e-47 |
| Msa0064140 | Msa1430550 | 0.831094 | 2.028077e-55 | -8.615850e-47 |
| Msa0064140 | Msa1457160 | 0.810188 | 1.304783e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064140 | MtrunA17_Chr1g0165831 | 93.774 | 257 | 16 | 0 | 1 | 257 | 1 | 257 | 6.32e-174 | 479 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0064140 | AT5G43650.1 | 38.934 | 244 | 121 | 9 | 14 | 246 | 16 | 242 | 1.13e-39 | 138 |
| Msa0064140 | AT5G43650.2 | 37.037 | 216 | 109 | 8 | 14 | 218 | 16 | 215 | 5.97e-31 | 114 |
Find 41 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTAGGTGATGTATTT+TGG | 0.078108 | 1_2:+25118570 | Msa0064140:CDS |
| ATATTCTATTATTTGCTTAT+TGG | 0.110049 | 1_2:-25119712 | None:intergenic |
| GGAGAACAAAGTTCTCTAAA+AGG | 0.214427 | 1_2:+25118704 | Msa0064140:CDS |
| CTTGTTCATGTTATTTGAAT+TGG | 0.244140 | 1_2:-25118729 | None:intergenic |
| ACATCACCTAGAAGAATTTC+AGG | 0.273267 | 1_2:-25118563 | None:intergenic |
| TGTTCTCCAAAACTAATCTT+TGG | 0.281467 | 1_2:-25118689 | None:intergenic |
| TTGAAATTGTTGAAAGACTA+TGG | 0.291892 | 1_2:+25119362 | Msa0064140:CDS |
| GACCAACCAAAGATTAGTTT+TGG | 0.306869 | 1_2:+25118683 | Msa0064140:CDS |
| ATAATAGAATATGAAGAGTT+TGG | 0.309360 | 1_2:+25119723 | Msa0064140:CDS |
| TGAACAAAAGCACTTAGATT+TGG | 0.329794 | 1_2:-25118653 | None:intergenic |
| ATTTGCTTATTGGAACCTTC+CGG | 0.340256 | 1_2:-25119702 | None:intergenic |
| ACAAGGATGCAAAGAGGAAT+TGG | 0.356536 | 1_2:+25119226 | Msa0064140:CDS |
| TTTGCTTATTGGAACCTTCC+GGG | 0.360847 | 1_2:-25119701 | None:intergenic |
| GCTACTTTATTTCTCTCTAA+AGG | 0.392734 | 1_2:-25118782 | None:intergenic |
| TTGGTTTGGTGAAAGATTGC+AGG | 0.432664 | 1_2:+25119612 | Msa0064140:intron |
| AGAGTGCCATGTCCTACATC+TGG | 0.435649 | 1_2:+25119317 | Msa0064140:CDS |
| CTTTGGTTTGTAGCTAAAAG+AGG | 0.459864 | 1_2:-25118599 | None:intergenic |
| CTCCAAAACTAATCTTTGGT+TGG | 0.462960 | 1_2:-25118685 | None:intergenic |
| GAGAACAAAGTTCTCTAAAA+GGG | 0.468425 | 1_2:+25118705 | Msa0064140:CDS |
| TGCAGGAACTGATGTGGAAA+AGG | 0.474929 | 1_2:+25119629 | Msa0064140:CDS |
| GTGTTTGAACAAAACTACTT+TGG | 0.490097 | 1_2:-25118616 | None:intergenic |
| TGTAGTACAAACAGCAGCTA+AGG | 0.514214 | 1_2:+25119190 | Msa0064140:CDS |
| CTTAGATTTGGTGTAGGACA+AGG | 0.518149 | 1_2:-25118641 | None:intergenic |
| ATAGAATCAATTCCAGATGT+AGG | 0.519760 | 1_2:-25119329 | None:intergenic |
| CTTACATGCAGTGTTACCTC+AGG | 0.529153 | 1_2:+25118886 | Msa0064140:CDS |
| GAAGCTTCATTCTCATGTCC+CGG | 0.537099 | 1_2:+25119683 | Msa0064140:CDS |
| AAGGAAATTCAAAGGCTACA+AGG | 0.552769 | 1_2:+25119209 | Msa0064140:CDS |
| AGTCTTAGAGATAGAATCTG+AGG | 0.576518 | 1_2:+25119436 | Msa0064140:CDS |
| ATTCAAATAACATGAACAAG+AGG | 0.578747 | 1_2:+25118732 | Msa0064140:CDS |
| ACATGATTAGTGAAAGAATG+AGG | 0.598991 | 1_2:+25118834 | Msa0064140:CDS |
| CTTCATTCTCATGTCCCGGA+AGG | 0.607283 | 1_2:+25119687 | Msa0064140:CDS |
| GAGCACTTGATGAACTTGAG+TGG | 0.616373 | 1_2:+25119661 | Msa0064140:CDS |
| AAAGCACTTAGATTTGGTGT+AGG | 0.616910 | 1_2:-25118647 | None:intergenic |
| CAGCAGCTAAGGAAATTCAA+AGG | 0.623684 | 1_2:+25119201 | Msa0064140:CDS |
| GATGCAAAGAGGAATTGGAA+AGG | 0.633307 | 1_2:+25119231 | Msa0064140:CDS |
| ATATATACTTTGGTTCCCTG+AGG | 0.644979 | 1_2:-25118902 | None:intergenic |
| TTACATGCAGTGTTACCTCA+GGG | 0.667292 | 1_2:+25118887 | Msa0064140:CDS |
| TCAATTCCAGATGTAGGACA+TGG | 0.671513 | 1_2:-25119323 | None:intergenic |
| AAAGATTGCAGGAACTGATG+TGG | 0.688766 | 1_2:+25119623 | Msa0064140:intron |
| AAGGCTACAAGGATGCAAAG+AGG | 0.691456 | 1_2:+25119220 | Msa0064140:CDS |
| GCAGAATGTGAAAGAGAACG+TGG | 0.731605 | 1_2:+25118803 | Msa0064140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTATTTTATTTTTA+TGG | + | chr1_2:25119150-25119169 | Msa0064140:intron | 0.0% |
| !!! | AAATTTTTATTTTATTTTTA+TGG | + | chr1_2:25119150-25119169 | Msa0064140:intron | 0.0% |
| !!! | AAATGTTTCTATATATACTT+TGG | - | chr1_2:25118915-25118934 | None:intergenic | 15.0% |
| !!! | ATTGTTTTAAATTGCATTTT+CGG | + | chr1_2:25118940-25118959 | Msa0064140:intron | 15.0% |
| !! | ATAGTAATATATGTTAATCA+TGG | - | chr1_2:25119066-25119085 | None:intergenic | 15.0% |
| !!! | AAAAAAGGGATTATTTTAAA+AGG | - | chr1_2:25119100-25119119 | None:intergenic | 15.0% |
| !! | TTGAAATGAAAACTAAAAAA+GGG | - | chr1_2:25119114-25119133 | None:intergenic | 15.0% |
| !! | ATATTCTATTATTTGCTTAT+TGG | - | chr1_2:25119715-25119734 | None:intergenic | 15.0% |
| !!! | AAATGTTTCTATATATACTT+TGG | - | chr1_2:25118915-25118934 | None:intergenic | 15.0% |
| !!! | ATTGTTTTAAATTGCATTTT+CGG | + | chr1_2:25118940-25118959 | Msa0064140:intron | 15.0% |
| !! | ATAGTAATATATGTTAATCA+TGG | - | chr1_2:25119066-25119085 | None:intergenic | 15.0% |
| !!! | AAAAAAGGGATTATTTTAAA+AGG | - | chr1_2:25119100-25119119 | None:intergenic | 15.0% |
| !! | TTGAAATGAAAACTAAAAAA+GGG | - | chr1_2:25119114-25119133 | None:intergenic | 15.0% |
| !! | ATATTCTATTATTTGCTTAT+TGG | - | chr1_2:25119715-25119734 | None:intergenic | 15.0% |
| !!! | TCCTACAAAATTTTATATTG+CGG | + | chr1_2:25118965-25118984 | Msa0064140:intron | 20.0% |
| !! | CTTGAAATGAAAACTAAAAA+AGG | - | chr1_2:25119115-25119134 | None:intergenic | 20.0% |
| !!! | TGATTTTGTAAAACTATACA+AGG | + | chr1_2:25119496-25119515 | Msa0064140:intron | 20.0% |
| !!! | AATTAAGATTTCTAGTGTAT+TGG | + | chr1_2:25119526-25119545 | Msa0064140:intron | 20.0% |
| !! | ATAATAGAATATGAAGAGTT+TGG | + | chr1_2:25119723-25119742 | Msa0064140:CDS | 20.0% |
| !!! | TCCTACAAAATTTTATATTG+CGG | + | chr1_2:25118965-25118984 | Msa0064140:intron | 20.0% |
| !! | CTTGAAATGAAAACTAAAAA+AGG | - | chr1_2:25119115-25119134 | None:intergenic | 20.0% |
| !!! | TGATTTTGTAAAACTATACA+AGG | + | chr1_2:25119496-25119515 | Msa0064140:intron | 20.0% |
| !!! | AATTAAGATTTCTAGTGTAT+TGG | + | chr1_2:25119526-25119545 | Msa0064140:intron | 20.0% |
| !! | ATAATAGAATATGAAGAGTT+TGG | + | chr1_2:25119723-25119742 | Msa0064140:CDS | 20.0% |
| !!! | TTTTTTCCTGAAATTCTTCT+AGG | + | chr1_2:25118557-25118576 | Msa0064140:CDS | 25.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_2:25118732-25118751 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_2:25118732-25118751 | Msa0064140:CDS | 25.0% |
| ! | TAATTGTGGTCGTAATATAA+AGG | - | chr1_2:25119020-25119039 | None:intergenic | 25.0% |
| ! | TTATATTACGACCACAATTA+TGG | + | chr1_2:25119020-25119039 | Msa0064140:intron | 25.0% |
| ! | TTGAAATTGTTGAAAGACTA+TGG | + | chr1_2:25119362-25119381 | Msa0064140:CDS | 25.0% |
| ! | TGTTTATGCTAAATATCTGT+TGG | + | chr1_2:25119593-25119612 | Msa0064140:intron | 25.0% |
| !!! | TTTTTTCCTGAAATTCTTCT+AGG | + | chr1_2:25118557-25118576 | Msa0064140:CDS | 25.0% |
| !! | CTTGTTCATGTTATTTGAAT+TGG | - | chr1_2:25118732-25118751 | None:intergenic | 25.0% |
| ! | ATTCAAATAACATGAACAAG+AGG | + | chr1_2:25118732-25118751 | Msa0064140:CDS | 25.0% |
| ! | TAATTGTGGTCGTAATATAA+AGG | - | chr1_2:25119020-25119039 | None:intergenic | 25.0% |
| ! | TTATATTACGACCACAATTA+TGG | + | chr1_2:25119020-25119039 | Msa0064140:intron | 25.0% |
| ! | TTGAAATTGTTGAAAGACTA+TGG | + | chr1_2:25119362-25119381 | Msa0064140:CDS | 25.0% |
| ! | TGTTTATGCTAAATATCTGT+TGG | + | chr1_2:25119593-25119612 | Msa0064140:intron | 25.0% |
| ! | TTCTTCTAGGTGATGTATTT+TGG | + | chr1_2:25118570-25118589 | Msa0064140:CDS | 30.0% |
| ! | TCTTCTAGGTGATGTATTTT+GGG | + | chr1_2:25118571-25118590 | Msa0064140:CDS | 30.0% |
| GTGTTTGAACAAAACTACTT+TGG | - | chr1_2:25118619-25118638 | None:intergenic | 30.0% | |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_2:25118656-25118675 | None:intergenic | 30.0% |
| TGTTCTCCAAAACTAATCTT+TGG | - | chr1_2:25118692-25118711 | None:intergenic | 30.0% | |
| ! | GAGAACAAAGTTCTCTAAAA+GGG | + | chr1_2:25118705-25118724 | Msa0064140:CDS | 30.0% |
| ! | GCTACTTTATTTCTCTCTAA+AGG | - | chr1_2:25118785-25118804 | None:intergenic | 30.0% |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_2:25118834-25118853 | Msa0064140:CDS | 30.0% | |
| ! | GCCGCAATATAAAATTTTGT+AGG | - | chr1_2:25118969-25118988 | None:intergenic | 30.0% |
| ATAGAATCAATTCCAGATGT+AGG | - | chr1_2:25119332-25119351 | None:intergenic | 30.0% | |
| ! | ATGCTAAATATCTGTTGGTT+TGG | + | chr1_2:25119598-25119617 | Msa0064140:intron | 30.0% |
| ! | TTCTTCTAGGTGATGTATTT+TGG | + | chr1_2:25118570-25118589 | Msa0064140:CDS | 30.0% |
| ! | TCTTCTAGGTGATGTATTTT+GGG | + | chr1_2:25118571-25118590 | Msa0064140:CDS | 30.0% |
| GTGTTTGAACAAAACTACTT+TGG | - | chr1_2:25118619-25118638 | None:intergenic | 30.0% | |
| !! | TGAACAAAAGCACTTAGATT+TGG | - | chr1_2:25118656-25118675 | None:intergenic | 30.0% |
| TGTTCTCCAAAACTAATCTT+TGG | - | chr1_2:25118692-25118711 | None:intergenic | 30.0% | |
| ! | GAGAACAAAGTTCTCTAAAA+GGG | + | chr1_2:25118705-25118724 | Msa0064140:CDS | 30.0% |
| ! | GCTACTTTATTTCTCTCTAA+AGG | - | chr1_2:25118785-25118804 | None:intergenic | 30.0% |
| ACATGATTAGTGAAAGAATG+AGG | + | chr1_2:25118834-25118853 | Msa0064140:CDS | 30.0% | |
| ! | GCCGCAATATAAAATTTTGT+AGG | - | chr1_2:25118969-25118988 | None:intergenic | 30.0% |
| ATAGAATCAATTCCAGATGT+AGG | - | chr1_2:25119332-25119351 | None:intergenic | 30.0% | |
| ! | ATGCTAAATATCTGTTGGTT+TGG | + | chr1_2:25119598-25119617 | Msa0064140:intron | 30.0% |
| ACATCACCTAGAAGAATTTC+AGG | - | chr1_2:25118566-25118585 | None:intergenic | 35.0% | |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_2:25118602-25118621 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_2:25118650-25118669 | None:intergenic | 35.0% |
| !!! | GACCAACCAAAGATTAGTTT+TGG | + | chr1_2:25118683-25118702 | Msa0064140:CDS | 35.0% |
| CTCCAAAACTAATCTTTGGT+TGG | - | chr1_2:25118688-25118707 | None:intergenic | 35.0% | |
| GGAGAACAAAGTTCTCTAAA+AGG | + | chr1_2:25118704-25118723 | Msa0064140:CDS | 35.0% | |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_2:25118750-25118769 | Msa0064140:CDS | 35.0% |
| ! | ATATATACTTTGGTTCCCTG+AGG | - | chr1_2:25118905-25118924 | None:intergenic | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_2:25119209-25119228 | Msa0064140:CDS | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_2:25119403-25119422 | Msa0064140:CDS | 35.0% |
| AGTCTTAGAGATAGAATCTG+AGG | + | chr1_2:25119436-25119455 | Msa0064140:CDS | 35.0% | |
| ATTTGCTTATTGGAACCTTC+CGG | - | chr1_2:25119705-25119724 | None:intergenic | 35.0% | |
| ACATCACCTAGAAGAATTTC+AGG | - | chr1_2:25118566-25118585 | None:intergenic | 35.0% | |
| !! | CTTTGGTTTGTAGCTAAAAG+AGG | - | chr1_2:25118602-25118621 | None:intergenic | 35.0% |
| !! | AAAGCACTTAGATTTGGTGT+AGG | - | chr1_2:25118650-25118669 | None:intergenic | 35.0% |
| !!! | GACCAACCAAAGATTAGTTT+TGG | + | chr1_2:25118683-25118702 | Msa0064140:CDS | 35.0% |
| CTCCAAAACTAATCTTTGGT+TGG | - | chr1_2:25118688-25118707 | None:intergenic | 35.0% | |
| GGAGAACAAAGTTCTCTAAA+AGG | + | chr1_2:25118704-25118723 | Msa0064140:CDS | 35.0% | |
| ! | AGAGGATGATTGCATTTTTG+AGG | + | chr1_2:25118750-25118769 | Msa0064140:CDS | 35.0% |
| ! | ATATATACTTTGGTTCCCTG+AGG | - | chr1_2:25118905-25118924 | None:intergenic | 35.0% |
| AAGGAAATTCAAAGGCTACA+AGG | + | chr1_2:25119209-25119228 | Msa0064140:CDS | 35.0% | |
| ! | CAAGTCAAATTTTTCTCAGC+AGG | + | chr1_2:25119403-25119422 | Msa0064140:CDS | 35.0% |
| AGTCTTAGAGATAGAATCTG+AGG | + | chr1_2:25119436-25119455 | Msa0064140:CDS | 35.0% | |
| ATTTGCTTATTGGAACCTTC+CGG | - | chr1_2:25119705-25119724 | None:intergenic | 35.0% | |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_2:25118644-25118663 | None:intergenic | 40.0% |
| TTACATGCAGTGTTACCTCA+GGG | + | chr1_2:25118887-25118906 | Msa0064140:CDS | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_2:25119190-25119209 | Msa0064140:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_2:25119201-25119220 | Msa0064140:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_2:25119226-25119245 | Msa0064140:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_2:25119231-25119250 | Msa0064140:CDS | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_2:25119326-25119345 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_2:25119612-25119631 | Msa0064140:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_2:25119623-25119642 | Msa0064140:intron | 40.0% | |
| TTTGCTTATTGGAACCTTCC+GGG | - | chr1_2:25119704-25119723 | None:intergenic | 40.0% | |
| !! | CTTAGATTTGGTGTAGGACA+AGG | - | chr1_2:25118644-25118663 | None:intergenic | 40.0% |
| TTACATGCAGTGTTACCTCA+GGG | + | chr1_2:25118887-25118906 | Msa0064140:CDS | 40.0% | |
| TGTAGTACAAACAGCAGCTA+AGG | + | chr1_2:25119190-25119209 | Msa0064140:CDS | 40.0% | |
| CAGCAGCTAAGGAAATTCAA+AGG | + | chr1_2:25119201-25119220 | Msa0064140:CDS | 40.0% | |
| ACAAGGATGCAAAGAGGAAT+TGG | + | chr1_2:25119226-25119245 | Msa0064140:CDS | 40.0% | |
| GATGCAAAGAGGAATTGGAA+AGG | + | chr1_2:25119231-25119250 | Msa0064140:CDS | 40.0% | |
| TCAATTCCAGATGTAGGACA+TGG | - | chr1_2:25119326-25119345 | None:intergenic | 40.0% | |
| !! | TTGGTTTGGTGAAAGATTGC+AGG | + | chr1_2:25119612-25119631 | Msa0064140:intron | 40.0% |
| AAAGATTGCAGGAACTGATG+TGG | + | chr1_2:25119623-25119642 | Msa0064140:intron | 40.0% | |
| TTTGCTTATTGGAACCTTCC+GGG | - | chr1_2:25119704-25119723 | None:intergenic | 40.0% | |
| GCAGAATGTGAAAGAGAACG+TGG | + | chr1_2:25118803-25118822 | Msa0064140:CDS | 45.0% | |
| CTTACATGCAGTGTTACCTC+AGG | + | chr1_2:25118886-25118905 | Msa0064140:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_2:25119220-25119239 | Msa0064140:CDS | 45.0% | |
| TGCAGGAACTGATGTGGAAA+AGG | + | chr1_2:25119629-25119648 | Msa0064140:CDS | 45.0% | |
| GAGCACTTGATGAACTTGAG+TGG | + | chr1_2:25119661-25119680 | Msa0064140:CDS | 45.0% | |
| GAAGCTTCATTCTCATGTCC+CGG | + | chr1_2:25119683-25119702 | Msa0064140:CDS | 45.0% | |
| GCAGAATGTGAAAGAGAACG+TGG | + | chr1_2:25118803-25118822 | Msa0064140:CDS | 45.0% | |
| CTTACATGCAGTGTTACCTC+AGG | + | chr1_2:25118886-25118905 | Msa0064140:CDS | 45.0% | |
| AAGGCTACAAGGATGCAAAG+AGG | + | chr1_2:25119220-25119239 | Msa0064140:CDS | 45.0% | |
| TGCAGGAACTGATGTGGAAA+AGG | + | chr1_2:25119629-25119648 | Msa0064140:CDS | 45.0% | |
| GAGCACTTGATGAACTTGAG+TGG | + | chr1_2:25119661-25119680 | Msa0064140:CDS | 45.0% | |
| GAAGCTTCATTCTCATGTCC+CGG | + | chr1_2:25119683-25119702 | Msa0064140:CDS | 45.0% | |
| !!! | AAATATAATTTTTCAATAAA+GGG | - | chr1_2:25119473-25119492 | None:intergenic | 5.0% |
| !!! | AAAATATAATTTTTCAATAA+AGG | - | chr1_2:25119474-25119493 | None:intergenic | 5.0% |
| !!! | AAATATAATTTTTCAATAAA+GGG | - | chr1_2:25119473-25119492 | None:intergenic | 5.0% |
| !!! | AAAATATAATTTTTCAATAA+AGG | - | chr1_2:25119474-25119493 | None:intergenic | 5.0% |
| GCAGTCTGCGACCATAATTG+TGG | - | chr1_2:25119034-25119053 | None:intergenic | 50.0% | |
| ! | AGAGTGCCATGTCCTACATC+TGG | + | chr1_2:25119317-25119336 | Msa0064140:CDS | 50.0% |
| CTTCATTCTCATGTCCCGGA+AGG | + | chr1_2:25119687-25119706 | Msa0064140:CDS | 50.0% | |
| GCAGTCTGCGACCATAATTG+TGG | - | chr1_2:25119034-25119053 | None:intergenic | 50.0% | |
| ! | AGAGTGCCATGTCCTACATC+TGG | + | chr1_2:25119317-25119336 | Msa0064140:CDS | 50.0% |
| CTTCATTCTCATGTCCCGGA+AGG | + | chr1_2:25119687-25119706 | Msa0064140:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 25118548 | 25119749 | 25118548 | ID=Msa0064140;Name=Msa0064140 |
| chr1_2 | mRNA | 25118548 | 25119749 | 25118548 | ID=Msa0064140-mRNA-1;Parent=Msa0064140;Name=Msa0064140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|257 |
| chr1_2 | exon | 25118548 | 25118916 | 25118548 | ID=Msa0064140-mRNA-1:exon:8962;Parent=Msa0064140-mRNA-1 |
| chr1_2 | exon | 25119176 | 25119457 | 25119176 | ID=Msa0064140-mRNA-1:exon:8963;Parent=Msa0064140-mRNA-1 |
| chr1_2 | exon | 25119627 | 25119749 | 25119627 | ID=Msa0064140-mRNA-1:exon:8964;Parent=Msa0064140-mRNA-1 |
| chr1_2 | CDS | 25118548 | 25118916 | 25118548 | ID=Msa0064140-mRNA-1:cds;Parent=Msa0064140-mRNA-1 |
| chr1_2 | CDS | 25119176 | 25119457 | 25119176 | ID=Msa0064140-mRNA-1:cds;Parent=Msa0064140-mRNA-1 |
| chr1_2 | CDS | 25119627 | 25119749 | 25119627 | ID=Msa0064140-mRNA-1:cds;Parent=Msa0064140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
