AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015910 MtrunA17_Chr1g0167691 88.364 275 11 3 1 274 1 255 9.34e-165 456
Msa0015910 MtrunA17_Chr1g0167661 79.636 275 34 3 1 274 1 254 1.61e-157 438
Msa0015910 MtrunA17_Chr1g0187761 62.724 279 78 6 1 274 1 258 1.79e-109 317
Msa0015910 MtrunA17_Chr7g0261281 48.421 285 129 6 1 274 1 278 2.40e-80 243
Msa0015910 MtrunA17_Chr7g0274581 73.276 116 31 0 1 116 1 116 3.88e-66 205
Msa0015910 MtrunA17_Chr1g0203411 56.111 180 63 2 1 164 1 180 9.86e-66 207
Msa0015910 MtrunA17_Chr4g0039971 74.359 117 30 0 1 117 2 118 4.23e-62 199
Msa0015910 MtrunA17_Chr2g0281071 74.576 118 29 1 1 117 1 118 6.36e-62 198
Msa0015910 MtrunA17_Chr2g0323411 74.359 117 30 0 1 117 1 117 1.10e-61 197
Msa0015910 MtrunA17_Chr4g0048511 73.729 118 30 1 1 117 1 118 3.66e-61 197
Msa0015910 MtrunA17_Chr7g0217741 73.276 116 31 0 1 116 1 116 7.42e-60 192
Msa0015910 MtrunA17_Chr3g0115821 70.339 118 35 0 1 118 1 118 1.11e-59 193
Msa0015910 MtrunA17_Chr4g0042671 74.138 116 30 0 1 116 1 116 1.26e-59 194
Msa0015910 MtrunA17_Chr2g0323351 47.059 221 112 3 1 216 1 221 1.75e-59 189
Msa0015910 MtrunA17_Chr6g0453471 72.414 116 32 0 1 116 1 116 5.99e-59 191
Msa0015910 MtrunA17_Chr4g0068061 69.828 116 35 0 1 116 1 116 2.47e-58 189
Msa0015910 MtrunA17_Chr7g0275911 67.797 118 38 0 1 118 1 118 3.75e-58 186
Msa0015910 MtrunA17_Chr8g0349261 69.748 119 34 2 1 117 1 119 6.36e-58 187
Msa0015910 MtrunA17_Chr8g0346561 67.241 116 38 0 1 116 1 116 6.55e-58 187
Msa0015910 MtrunA17_Chr4g0037141 68.644 118 37 0 1 118 1 118 1.48e-57 185
Msa0015910 MtrunA17_Chr4g0022931 68.376 117 36 1 1 116 1 117 5.67e-57 184
Msa0015910 MtrunA17_Chr4g0022891 45.217 230 105 5 1 219 1 220 6.92e-57 182
Msa0015910 MtrunA17_Chr4g0022901 62.143 140 50 3 1 137 1 140 1.03e-56 183
Msa0015910 MtrunA17_Chr5g0410961 69.231 117 36 0 1 117 1 117 1.10e-56 185
Msa0015910 MtrunA17_Chr3g0121241 51.250 160 78 0 5 164 35 194 1.30e-56 184
Msa0015910 MtrunA17_Chr4g0070641 49.153 177 79 2 1 177 1 166 1.98e-56 179
Msa0015910 MtrunA17_Chr4g0070611 48.691 191 84 4 1 188 1 180 3.53e-56 182
Msa0015910 MtrunA17_Chr5g0395281 68.376 117 37 0 1 117 1 117 5.45e-56 182
Msa0015910 MtrunA17_Chr2g0311221 70.642 109 32 0 3 111 5 113 1.08e-55 182
Msa0015910 MtrunA17_Chr4g0022911 58.042 143 57 2 1 142 1 141 3.20e-55 179
Msa0015910 MtrunA17_Chr3g0131121 55.128 156 58 1 1 156 1 144 6.21e-55 179
Msa0015910 MtrunA17_Chr1g0194951 66.379 116 39 0 1 116 1 116 1.78e-54 180
Msa0015910 MtrunA17_Chr3g0092401 65.000 120 42 0 1 120 2 121 2.29e-54 178
Msa0015910 MtrunA17_Chr7g0217221 43.443 244 122 5 1 228 1 244 4.62e-54 176
Msa0015910 MtrunA17_Chr1g0193371 53.073 179 73 4 1 168 1 179 2.30e-53 177
Msa0015910 MtrunA17_Chr4g0060721 63.793 116 42 0 1 116 2 117 4.27e-53 176
Msa0015910 MtrunA17_Chr8g0385321 65.517 116 40 0 1 116 1 116 4.84e-53 175
Msa0015910 MtrunA17_Chr3g0103281 65.517 116 40 0 1 116 1 116 9.78e-53 174
Msa0015910 MtrunA17_Chr7g0269831 71.552 116 33 0 1 116 1 116 1.06e-52 175
Msa0015910 MtrunA17_Chr6g0453211 66.667 111 37 0 1 111 1 111 1.15e-52 174
Msa0015910 MtrunA17_Chr3g0110351 66.379 116 39 0 1 116 1 116 2.38e-52 173
Msa0015910 MtrunA17_Chr7g0228891 64.655 116 41 0 1 116 1 116 4.44e-52 171
Msa0015910 MtrunA17_Chr1g0193801 47.895 190 74 3 1 165 1 190 6.29e-52 174
Msa0015910 MtrunA17_Chr7g0270891 53.846 156 68 1 1 152 1 156 7.11e-52 173
Msa0015910 MtrunA17_Chr5g0434571 66.379 116 39 0 1 116 37 152 7.82e-52 173
Msa0015910 MtrunA17_Chr4g0057031 63.248 117 43 0 1 117 1 117 1.76e-51 169
Msa0015910 MtrunA17_Chr4g0022881 62.281 114 43 0 1 114 1 114 1.96e-51 168
Msa0015910 MtrunA17_Chr7g0254411 55.280 161 70 2 1 160 1 160 2.09e-51 171
Msa0015910 MtrunA17_Chr5g0400821 44.131 213 97 5 1 206 1 198 2.52e-51 170
Msa0015910 MtrunA17_Chr1g0151941 61.017 118 45 1 1 117 1 118 3.17e-51 168
Msa0015910 MtrunA17_Chr1g0152011 52.288 153 72 1 1 152 1 153 4.15e-51 171
Msa0015910 MtrunA17_Chr7g0271241 47.317 205 93 6 1 199 1 196 1.12e-50 171
Msa0015910 MtrunA17_Chr5g0435101 57.759 116 49 0 2 117 1 116 7.12e-50 163
Msa0015910 MtrunA17_Chr4g0058631 63.248 117 43 0 1 117 1 117 1.46e-49 167
Msa0015910 MtrunA17_Chr4g0028311 61.017 118 45 1 1 117 1 118 2.26e-48 163
Msa0015910 MtrunA17_Chr4g0044421 61.538 117 44 1 2 117 1 117 4.07e-48 158
Msa0015910 MtrunA17_Chr3g0117091 62.393 117 44 0 1 117 1 117 7.31e-48 162
Msa0015910 MtrunA17_Chr2g0309911 46.032 189 90 4 6 192 5 183 7.56e-48 161
Msa0015910 MtrunA17_Chr4g0032401 48.876 178 80 3 12 181 17 191 1.00e-47 161
Msa0015910 MtrunA17_Chr5g0417821 66.355 107 36 0 11 117 6 112 1.26e-47 160
Msa0015910 MtrunA17_Chr7g0264641 57.851 121 50 1 1 120 1 121 1.60e-47 159
Msa0015910 MtrunA17_Chr3g0135311 41.711 187 105 2 1 186 1 184 2.35e-47 161
Msa0015910 MtrunA17_Chr1g0211161 60.870 115 45 0 3 117 4 118 3.78e-47 157
Msa0015910 MtrunA17_Chr6g0452271 57.265 117 50 0 1 117 1 117 7.20e-47 159
Msa0015910 MtrunA17_Chr2g0330041 58.974 117 48 0 1 117 1 117 2.10e-46 160
Msa0015910 MtrunA17_Chr2g0327351 62.162 111 41 1 1 110 1 111 2.29e-46 157
Msa0015910 MtrunA17_Chr4g0054391 54.110 146 65 2 1 144 1 146 3.92e-46 156
Msa0015910 MtrunA17_Chr8g0342541 57.265 117 50 0 1 117 1 117 5.54e-46 157
Msa0015910 MtrunA17_Chr8g0342521 57.265 117 50 0 1 117 1 117 1.62e-45 156
Msa0015910 MtrunA17_Chr8g0387421 56.034 116 51 0 1 116 1 116 1.22e-44 153
Msa0015910 MtrunA17_Chr4g0072751 61.261 111 42 1 1 110 1 111 3.42e-44 153
Msa0015910 MtrunA17_Chr1g0203441 64.423 104 37 0 13 116 14 117 3.94e-44 150
Msa0015910 MtrunA17_Chr2g0328771 63.551 107 39 0 12 118 20 126 4.32e-44 152
Msa0015910 MtrunA17_Chr6g0487491 53.488 129 51 2 1 120 1 129 1.09e-43 149
Msa0015910 MtrunA17_Chr1g0209661 60.185 108 43 0 8 115 23 130 1.20e-43 150
Msa0015910 MtrunA17_Chr8g0343831 58.621 116 44 1 1 116 1 112 1.43e-43 148
Msa0015910 MtrunA17_Chr6g0470971 58.929 112 46 0 4 115 6 117 1.46e-43 149
Msa0015910 MtrunA17_Chr7g0228231 58.036 112 47 0 12 123 14 125 1.57e-43 147
Msa0015910 MtrunA17_Chr5g0397231 53.906 128 59 0 1 128 1 128 5.35e-43 149
Msa0015910 MtrunA17_Chr3g0099131 48.299 147 70 1 12 152 41 187 7.13e-43 153
Msa0015910 MtrunA17_Chr5g0434911 53.571 112 52 0 7 118 16 127 7.75e-43 147
Msa0015910 MtrunA17_Chr8g0342481 54.098 122 55 1 1 121 1 122 8.99e-43 150
Msa0015910 MtrunA17_Chr4g0055981 58.879 107 44 0 9 115 52 158 1.28e-42 145
Msa0015910 MtrunA17_Chr3g0088461 63.889 108 39 0 9 116 19 126 1.30e-42 148
Msa0015910 MtrunA17_Chr3g0080861 60.577 104 41 0 12 115 37 140 1.85e-42 152
Msa0015910 MtrunA17_Chr8g0354661 60.577 104 41 0 12 115 37 140 2.13e-42 152
Msa0015910 MtrunA17_Chr6g0450101 50.370 135 63 2 1 133 1 133 2.70e-42 144
Msa0015910 MtrunA17_Chr5g0434931 54.128 109 50 0 10 118 33 141 3.50e-42 145
Msa0015910 MtrunA17_Chr7g0240821 44.048 168 88 3 16 183 5 166 4.44e-42 144
Msa0015910 MtrunA17_Chr2g0322521 61.682 107 41 0 9 115 26 132 7.01e-42 148
Msa0015910 MtrunA17_Chr7g0220341 45.732 164 80 3 11 170 24 182 8.71e-42 144
Msa0015910 MtrunA17_Chr2g0294811 68.478 92 29 0 1 92 1 92 1.11e-41 139
Msa0015910 MtrunA17_Chr4g0042611 68.182 88 28 0 1 88 1 88 2.04e-41 137
Msa0015910 MtrunA17_Chr5g0434831 56.481 108 47 0 10 117 5 112 2.94e-41 140
Msa0015910 MtrunA17_Chr1g0194291 59.048 105 43 0 11 115 20 124 7.94e-41 142
Msa0015910 MtrunA17_Chr1g0186061 52.033 123 57 1 13 135 21 141 8.61e-41 141
Msa0015910 MtrunA17_Chr1g0154031 58.654 104 43 0 12 115 76 179 8.75e-41 145
Msa0015910 MtrunA17_Chr1g0168661 53.982 113 52 0 6 118 15 127 1.99e-40 140
Msa0015910 MtrunA17_Chr7g0228991 53.704 108 50 0 10 117 27 134 7.91e-40 139
Msa0015910 MtrunA17_Chr1g0180391 57.143 105 45 0 12 116 19 123 1.81e-39 137
Msa0015910 MtrunA17_Chr8g0360111 56.863 102 44 0 11 112 24 125 1.88e-39 138
Msa0015910 MtrunA17_Chr5g0434841 52.727 110 52 0 8 117 16 125 3.01e-39 139
Msa0015910 MtrunA17_Chr1g0194301 43.373 166 87 3 12 170 33 198 7.45e-39 137
Msa0015910 MtrunA17_Chr2g0323321 63.043 92 33 1 1 92 1 91 1.09e-38 131
Msa0015910 MtrunA17_Chr4g0068921 57.282 103 44 0 12 114 24 126 1.39e-36 129
Msa0015910 MtrunA17_Chr7g0247131 75.342 73 18 0 44 116 10 82 1.93e-36 130
Msa0015910 MtrunA17_Chr2g0293911 57.282 103 44 0 12 114 24 126 4.60e-36 131
Msa0015910 MtrunA17_Chr1g0192411 52.885 104 49 0 12 115 12 115 5.18e-36 132
Msa0015910 MtrunA17_Chr2g0327821 45.455 143 68 1 12 154 6 138 9.40e-36 127
Msa0015910 MtrunA17_Chr5g0440781 53.398 103 47 1 13 114 13 115 1.06e-35 126
Msa0015910 MtrunA17_Chr5g0440761 53.398 103 47 1 13 114 13 115 4.60e-35 127
Msa0015910 MtrunA17_Chr5g0441141 53.398 103 47 1 13 114 13 115 6.25e-35 127
Msa0015910 MtrunA17_Chr5g0395221 63.636 88 32 0 1 88 1 88 1.00e-34 120
Msa0015910 MtrunA17_Chr4g0030881 50.909 110 47 1 13 115 8 117 1.83e-34 125
Msa0015910 MtrunA17_Chr5g0441131 50.485 103 50 1 13 114 10 112 1.26e-32 118
Msa0015910 MtrunA17_Chr8g0342531 56.180 89 39 0 1 89 1 89 3.78e-32 116
Msa0015910 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 5.34e-32 115
Msa0015910 MtrunA17_Chr4g0013361 43.077 130 72 2 8 136 6 134 5.38e-32 119
Msa0015910 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.33e-31 112
Msa0015910 MtrunA17_Chr8g0334881 46.018 113 58 2 8 117 6 118 4.07e-31 117
Msa0015910 MtrunA17_Chr3g0133601 51.961 102 48 1 14 115 37 137 1.39e-30 114
Msa0015910 MtrunA17_Chr8g0342461 55.556 90 39 1 1 89 1 90 2.81e-30 110
Msa0015910 MtrunA17_Chr8g0342471 55.556 90 39 1 1 89 1 90 1.05e-29 109
Msa0015910 MtrunA17_Chr6g0454921 50.980 102 49 1 14 115 15 115 9.54e-29 108
Msa0015910 MtrunA17_Chr4g0008551 43.939 132 67 3 14 140 38 167 1.36e-28 111
Msa0015910 MtrunA17_Chr5g0401731 50.000 102 50 1 14 115 15 115 5.41e-28 109
Msa0015910 MtrunA17_Chr4g0053431 49.057 106 45 2 14 115 5 105 8.63e-28 107
Msa0015910 MtrunA17_Chr5g0425591 53.659 82 37 1 13 93 10 91 3.26e-27 101
Msa0015910 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 4.67e-26 101
Msa0015910 MtrunA17_Chr3g0117511 38.411 151 73 3 3 151 170 302 8.25e-26 105
Msa0015910 MtrunA17_Chr5g0434901 62.121 66 25 0 48 113 9 74 8.41e-26 98.6
Msa0015910 MtrunA17_Chr5g0429661 36.842 209 103 9 12 214 120 305 9.63e-26 103
Msa0015910 MtrunA17_Chr7g0229131 51.111 90 39 1 45 129 5 94 2.37e-25 99.0
Msa0015910 MtrunA17_Chr7g0238631 42.069 145 79 3 12 152 111 254 2.96e-25 104
Msa0015910 MtrunA17_Chr7g0238631 33.000 100 65 2 14 112 61 159 8.83e-12 65.1
Msa0015910 MtrunA17_Chr3g0139671 39.416 137 66 2 12 132 83 218 3.28e-25 104
Msa0015910 MtrunA17_Chr3g0139671 37.000 100 61 2 14 112 33 131 8.50e-14 71.2
Msa0015910 MtrunA17_Chr6g0453751 49.462 93 38 2 10 93 18 110 4.96e-25 97.1
Msa0015910 MtrunA17_Chr1g0157731 43.810 105 58 1 12 116 89 192 8.28e-25 103
Msa0015910 MtrunA17_Chr1g0157731 35.000 100 63 2 14 112 39 137 7.73e-13 68.6
Msa0015910 MtrunA17_Chr6g0480581 46.535 101 53 1 14 114 4 103 4.09e-24 97.4
Msa0015910 MtrunA17_Chr4g0042501 37.500 136 78 3 14 148 105 234 8.96e-24 99.8
Msa0015910 MtrunA17_Chr4g0058991 36.424 151 75 4 3 151 197 328 1.08e-23 99.8
Msa0015910 MtrunA17_Chr5g0417621 39.098 133 74 3 14 145 134 260 3.60e-23 98.2
Msa0015910 MtrunA17_Chr7g0228531 32.000 225 126 8 14 235 220 420 9.04e-23 96.7
Msa0015910 MtrunA17_Chr6g0460661 43.299 97 54 1 14 110 16 111 1.37e-20 85.9
Msa0015910 MtrunA17_Chr3g0093811 52.055 73 35 0 44 116 14 86 1.47e-20 88.6
Msa0015910 MtrunA17_Chr3g0125801 43.119 109 59 2 8 115 10 116 2.41e-20 88.2
Msa0015910 MtrunA17_Chr5g0437321 43.434 99 55 1 14 112 19 116 3.51e-20 87.8
Msa0015910 MtrunA17_Chr7g0254261 44.118 102 56 1 14 115 89 189 3.65e-20 88.6
Msa0015910 MtrunA17_Chr1g0177901 36.735 147 88 3 24 170 4 145 4.01e-20 85.9
Msa0015910 MtrunA17_Chr7g0228401 42.991 107 57 3 25 131 290 392 4.93e-20 89.4
Msa0015910 MtrunA17_Chr6g0460671 42.157 102 58 1 14 115 99 199 2.99e-19 86.3
Msa0015910 MtrunA17_Chr7g0228481 30.702 228 125 9 14 235 220 420 4.21e-19 86.3
Msa0015910 MtrunA17_Chr5g0397841 45.361 97 52 1 12 108 108 203 5.23e-19 86.3
Msa0015910 MtrunA17_Chr5g0416341 38.298 141 70 4 17 141 29 168 3.96e-18 83.6
Msa0015910 MtrunA17_Chr7g0238651 36.111 108 67 1 17 122 10 117 4.93e-18 82.8
Msa0015910 MtrunA17_Chr7g0247141 66.667 48 15 1 1 47 1 48 7.81e-18 75.9
Msa0015910 MtrunA17_Chr1g0193901 48.315 89 44 2 10 96 9 97 5.26e-17 75.1
Msa0015910 MtrunA17_Chr1g0193891 48.315 89 44 2 10 96 9 97 5.26e-17 75.1
Msa0015910 MtrunA17_Chr1g0193871 48.315 89 44 2 10 96 9 97 5.26e-17 75.1
Msa0015910 MtrunA17_Chr1g0193881 48.315 89 44 2 10 96 9 97 5.26e-17 75.1
Msa0015910 MtrunA17_Chr8g0362231 35.036 137 79 3 17 153 25 151 5.68e-17 80.1
Msa0015910 MtrunA17_Chr7g0233061 34.483 145 75 6 14 152 180 310 7.92e-17 79.3
Msa0015910 MtrunA17_Chr5g0434871 57.778 45 19 0 74 118 2 46 1.22e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015910 AT3G23250.1 51.408 284 122 6 1 271 1 281 5.03e-85 256
Msa0015910 AT2G31180.1 48.746 279 108 8 1 274 1 249 2.27e-74 228
Msa0015910 AT1G06180.1 46.996 283 104 8 1 274 1 246 2.53e-71 219
Msa0015910 AT1G16490.1 62.338 154 55 2 3 155 5 156 1.87e-64 203
Msa0015910 AT4G21440.1 75.214 117 29 0 1 117 1 117 2.39e-64 205
Msa0015910 AT4G05100.1 75.424 118 28 1 1 117 1 118 1.78e-62 199
Msa0015910 AT3G61250.1 51.872 187 67 3 1 164 1 187 2.10e-62 199
Msa0015910 AT1G79180.1 57.059 170 65 3 3 170 5 168 2.86e-62 198
Msa0015910 AT4G28110.1 70.588 119 35 0 1 119 1 119 5.27e-61 194
Msa0015910 AT5G16770.4 71.795 117 33 0 1 117 1 117 7.18e-61 196
Msa0015910 AT5G16770.3 71.795 117 33 0 1 117 1 117 7.18e-61 196
Msa0015910 AT5G16770.1 71.795 117 33 0 1 117 1 117 1.42e-60 195
Msa0015910 AT5G16770.2 71.795 117 33 0 1 117 1 117 1.42e-60 195
Msa0015910 AT3G02940.2 70.085 117 35 0 1 117 1 117 7.71e-60 192
Msa0015910 AT3G02940.1 70.085 117 35 0 1 117 1 117 1.46e-59 192
Msa0015910 AT3G02940.3 70.085 117 35 0 1 117 1 117 1.46e-59 192
Msa0015910 AT1G35515.1 48.691 191 89 3 1 191 1 182 1.56e-59 188
Msa0015910 AT1G56160.1 71.930 114 32 0 3 116 5 118 1.77e-59 191
Msa0015910 AT3G01140.2 70.940 117 34 0 1 117 1 117 5.65e-59 191
Msa0015910 AT5G15310.1 70.940 117 34 0 1 117 1 117 2.13e-58 189
Msa0015910 AT5G15310.2 70.940 117 34 0 1 117 1 117 2.82e-58 189
Msa0015910 AT5G15310.4 70.940 117 34 0 1 117 1 117 3.80e-58 186
Msa0015910 AT2G16720.1 68.644 118 37 0 1 118 1 118 4.38e-58 187
Msa0015910 AT3G12820.1 48.148 216 105 4 3 211 5 220 4.41e-58 186
Msa0015910 AT3G01140.1 70.085 117 35 0 1 117 44 160 4.49e-58 190
Msa0015910 AT1G34670.1 70.940 117 34 0 1 117 1 117 9.90e-58 189
Msa0015910 AT3G13540.1 40.741 243 120 4 4 230 15 249 1.23e-57 185
Msa0015910 AT5G10280.1 69.231 117 36 0 1 117 1 117 2.04e-57 187
Msa0015910 AT4G38620.1 50.262 191 82 3 1 189 1 180 2.41e-57 185
Msa0015910 AT1G22640.1 63.780 127 45 1 1 127 1 126 7.79e-57 183
Msa0015910 AT5G65230.1 70.085 117 35 0 1 117 1 117 1.84e-56 184
Msa0015910 AT4G09460.1 66.102 118 40 0 1 118 1 118 2.23e-56 181
Msa0015910 AT5G49330.1 68.966 116 36 0 1 116 1 116 2.33e-56 184
Msa0015910 AT4G17785.2 66.949 118 38 1 1 117 1 118 5.50e-56 184
Msa0015910 AT4G17785.1 66.949 118 38 1 1 117 1 118 6.41e-56 184
Msa0015910 AT1G79180.2 47.783 203 65 4 3 170 5 201 1.89e-55 182
Msa0015910 AT4G22680.1 44.889 225 105 6 1 217 1 214 5.21e-55 179
Msa0015910 AT5G16600.1 45.631 206 100 4 1 199 1 201 8.70e-55 180
Msa0015910 AT2G47460.1 66.102 118 40 0 1 118 1 118 1.11e-54 181
Msa0015910 AT5G62470.2 56.944 144 62 0 1 144 1 144 1.25e-54 180
Msa0015910 AT5G60890.1 66.379 116 39 0 1 116 1 116 1.29e-54 179
Msa0015910 AT3G28910.1 63.934 122 44 0 1 122 1 122 2.32e-54 179
Msa0015910 AT5G61420.2 67.521 117 38 0 1 117 1 117 2.63e-54 180
Msa0015910 AT5G07690.1 66.949 118 39 0 1 118 1 118 3.83e-54 179
Msa0015910 AT4G12350.1 39.535 258 131 6 1 241 1 250 5.05e-54 177
Msa0015910 AT1G18570.1 66.949 118 38 1 1 117 1 118 5.64e-54 179
Msa0015910 AT4G34990.1 66.667 117 39 0 1 117 1 117 8.26e-54 176
Msa0015910 AT3G62610.1 66.379 116 39 0 1 116 1 116 1.31e-53 177
Msa0015910 AT5G62470.1 56.944 144 61 1 1 144 1 143 2.80e-53 177
Msa0015910 AT3G47600.1 63.636 121 44 0 1 121 1 121 3.44e-53 176
Msa0015910 AT1G74080.1 64.957 117 41 0 1 117 1 117 6.54e-53 175
Msa0015910 AT1G74650.1 65.812 117 40 0 1 117 1 117 8.08e-53 175
Msa0015910 AT1G08810.1 46.231 199 99 3 1 196 1 194 1.30e-52 173
Msa0015910 AT1G66230.1 53.205 156 68 2 1 152 1 155 1.49e-52 173
Msa0015910 AT1G57560.1 64.103 117 42 0 1 117 1 117 2.24e-52 173
Msa0015910 AT1G57560.2 64.103 117 42 0 1 117 1 117 3.85e-52 171
Msa0015910 AT5G54230.1 72.642 106 29 0 12 117 12 117 5.89e-52 172
Msa0015910 AT5G07700.1 65.254 118 41 0 1 118 1 118 6.06e-52 173
Msa0015910 AT5G07700.2 65.254 118 41 0 1 118 1 118 6.06e-52 173
Msa0015910 AT4G01680.3 65.517 116 40 0 1 116 1 116 1.96e-51 169
Msa0015910 AT5G56110.1 65.517 116 40 0 1 116 1 116 4.68e-51 170
Msa0015910 AT4G01680.1 65.517 116 40 0 1 116 1 116 5.87e-51 170
Msa0015910 AT5G26660.1 64.655 116 41 0 1 116 1 116 7.69e-51 171
Msa0015910 AT5G14340.1 44.660 206 105 5 1 201 13 214 1.18e-50 168
Msa0015910 AT1G09540.1 55.714 140 58 1 1 136 1 140 9.28e-50 168
Msa0015910 AT4G37780.1 59.322 118 47 1 1 117 1 118 2.80e-49 165
Msa0015910 AT5G62320.1 52.113 142 58 2 3 137 4 142 5.42e-49 162
Msa0015910 AT5G57620.1 62.712 118 43 1 1 117 1 118 7.21e-49 165
Msa0015910 AT3G13890.2 59.829 117 47 0 1 117 1 117 1.38e-48 165
Msa0015910 AT3G49690.1 62.185 119 44 1 1 118 1 119 2.49e-48 163
Msa0015910 AT5G65790.1 61.345 119 45 1 1 118 1 119 1.84e-47 162
Msa0015910 AT3G12720.1 60.177 113 45 0 6 118 16 128 1.85e-47 160
Msa0015910 AT4G01680.2 59.375 128 40 1 1 116 1 128 2.17e-47 161
Msa0015910 AT5G23000.1 48.485 165 80 3 1 160 1 165 7.79e-47 159
Msa0015910 AT1G18710.1 61.207 116 45 0 1 116 1 116 2.15e-46 156
Msa0015910 AT2G36890.1 49.080 163 82 1 1 162 1 163 3.57e-46 157
Msa0015910 AT1G74430.1 56.061 132 54 1 1 128 1 132 4.71e-46 155
Msa0015910 AT5G35550.1 62.832 113 42 0 12 124 14 126 5.55e-46 155
Msa0015910 AT2G36890.2 49.080 163 82 1 1 162 42 204 7.99e-46 157
Msa0015910 AT2G32460.1 61.111 108 42 0 8 115 14 121 9.98e-46 160
Msa0015910 AT3G13890.1 55.556 126 47 1 1 117 1 126 1.47e-45 157
Msa0015910 AT5G14750.1 60.577 104 41 0 13 116 17 120 2.23e-45 152
Msa0015910 AT2G32460.2 61.321 106 41 0 10 115 4 109 3.33e-45 159
Msa0015910 AT5G06100.1 60.952 105 41 0 11 115 31 135 7.05e-45 157
Msa0015910 AT5G52600.1 42.857 203 96 4 9 202 9 200 7.17e-45 150
Msa0015910 AT5G40330.1 59.615 104 42 0 13 116 13 116 8.19e-45 151
Msa0015910 AT3G28470.1 60.000 110 44 0 1 110 1 110 9.59e-45 154
Msa0015910 AT1G63910.1 57.759 116 49 0 1 116 1 116 9.93e-45 155
Msa0015910 AT5G06100.5 60.952 105 41 0 11 115 31 135 3.06e-44 157
Msa0015910 AT5G06100.2 60.952 105 41 0 11 115 31 135 3.06e-44 157
Msa0015910 AT5G06100.3 60.952 105 41 0 11 115 31 135 3.06e-44 157
Msa0015910 AT5G06100.4 60.952 105 41 0 11 115 31 135 3.06e-44 157
Msa0015910 AT5G40350.1 40.097 207 101 7 12 214 17 204 1.09e-43 148
Msa0015910 AT3G11440.2 57.522 113 44 1 7 115 32 144 3.76e-43 153
Msa0015910 AT3G23250.2 43.612 227 112 6 58 271 1 224 6.00e-43 146
Msa0015910 AT3G27920.1 55.455 110 49 0 8 117 10 119 6.47e-43 146
Msa0015910 AT5G55020.1 60.000 105 42 0 12 116 26 130 6.69e-43 153
Msa0015910 AT5G12870.1 59.130 115 47 0 2 116 8 122 6.88e-43 148
Msa0015910 AT3G01530.1 44.785 163 86 1 8 166 21 183 1.10e-42 145
Msa0015910 AT3G11440.3 57.522 113 44 1 7 115 32 144 1.32e-42 153
Msa0015910 AT3G11440.4 57.522 113 44 1 7 115 32 144 1.32e-42 153
Msa0015910 AT3G11440.1 57.522 113 44 1 7 115 32 144 1.32e-42 153
Msa0015910 AT4G13480.1 51.163 129 57 1 13 141 7 129 1.44e-42 146
Msa0015910 AT3G27810.1 46.154 156 77 2 12 160 20 175 2.34e-42 145
Msa0015910 AT4G25560.1 62.162 111 42 0 13 123 11 121 3.07e-42 146
Msa0015910 AT3G08500.1 61.111 108 42 0 9 116 27 134 9.34e-42 147
Msa0015910 AT1G68320.1 45.304 181 94 3 12 187 19 199 1.59e-41 144
Msa0015910 AT3G30210.1 53.226 124 51 1 11 134 26 142 3.26e-41 143
Msa0015910 AT3G24310.1 52.381 126 58 1 9 134 15 138 4.18e-41 143
Msa0015910 AT4G26930.1 57.282 103 44 0 12 114 19 121 5.84e-41 145
Msa0015910 AT5G52260.1 58.824 119 49 0 1 119 1 119 6.65e-41 142
Msa0015910 AT1G25340.1 58.036 112 45 1 13 122 19 130 7.84e-41 142
Msa0015910 AT2G26960.1 56.604 106 46 0 9 114 17 122 9.48e-41 146
Msa0015910 AT1G48000.1 48.000 150 72 3 12 155 32 181 1.51e-39 138
Msa0015910 AT2G47190.1 54.630 108 49 0 8 115 16 123 2.33e-39 138
Msa0015910 AT1G66370.1 55.660 106 47 0 10 115 6 111 5.10e-39 137
Msa0015910 AT1G66380.1 58.491 106 44 0 10 115 6 111 6.37e-38 130
Msa0015910 AT1G56650.1 36.207 232 127 5 10 230 6 227 8.33e-38 134
Msa0015910 AT1G66390.1 58.491 106 44 0 10 115 6 111 3.88e-37 132
Msa0015910 AT3G48920.1 54.717 106 48 0 9 114 15 120 4.42e-37 132
Msa0015910 AT3G46130.1 51.852 108 52 0 8 115 5 112 1.10e-36 131
Msa0015910 AT1G25340.2 55.357 112 43 2 13 122 19 125 2.21e-36 131
Msa0015910 AT5G59780.3 53.398 103 48 0 13 115 9 111 3.00e-36 129
Msa0015910 AT1G25340.3 55.357 112 43 2 13 122 19 125 3.43e-36 131
Msa0015910 AT3G53200.1 55.769 104 46 0 12 115 9 112 3.37e-35 127
Msa0015910 AT3G12820.2 44.186 172 89 4 47 211 1 172 3.68e-35 125
Msa0015910 AT3G06490.1 58.252 103 43 0 12 114 19 121 3.79e-35 129
Msa0015910 AT5G49620.1 55.140 107 48 0 8 114 22 128 1.02e-34 127
Msa0015910 AT5G35550.2 65.116 86 30 0 39 124 44 129 3.38e-33 122
Msa0015910 AT5G26660.2 72.222 72 20 0 45 116 14 85 9.38e-33 122
Msa0015910 AT5G14750.3 64.103 78 25 1 39 116 12 86 1.05e-32 118
Msa0015910 AT3G60460.1 45.299 117 62 2 7 122 6 121 1.06e-31 119
Msa0015910 AT5G49620.2 48.760 121 48 1 8 114 22 142 4.69e-31 118
Msa0015910 AT2G26950.1 49.000 100 51 0 9 108 13 112 5.72e-30 116
Msa0015910 AT5G40350.2 37.356 174 86 7 45 214 5 159 4.82e-29 108
Msa0015910 AT3G47600.2 63.636 77 28 0 45 121 39 115 1.24e-28 111
Msa0015910 AT3G27810.2 43.200 125 64 2 43 160 2 126 2.72e-28 107
Msa0015910 AT4G37260.1 50.000 102 50 1 14 115 13 113 1.24e-27 108
Msa0015910 AT2G23290.1 50.000 102 50 1 14 115 13 113 2.93e-27 107
Msa0015910 AT3G46130.3 61.111 72 28 0 44 115 9 80 2.94e-27 105
Msa0015910 AT5G59780.2 61.972 71 27 0 45 115 20 90 4.94e-27 104
Msa0015910 AT3G46130.4 61.972 71 27 0 45 115 20 90 6.85e-27 105
Msa0015910 AT3G53200.2 63.380 71 26 0 45 115 9 79 1.47e-26 103
Msa0015910 AT3G09230.1 44.954 109 51 2 14 118 55 158 1.77e-26 107
Msa0015910 AT3G55730.1 47.788 113 50 2 14 122 56 163 1.94e-26 107
Msa0015910 AT3G50060.1 40.000 150 85 2 14 159 6 154 2.36e-26 105
Msa0015910 AT3G09370.2 42.208 154 67 5 12 148 133 281 3.49e-26 107
Msa0015910 AT3G09370.2 34.351 131 79 3 14 143 83 207 2.23e-14 73.2
Msa0015910 AT3G09370.3 42.208 154 67 5 12 148 141 289 3.71e-26 107
Msa0015910 AT3G09370.3 34.351 131 79 3 14 143 91 215 1.58e-14 73.6
Msa0015910 AT2G39880.1 50.000 106 44 2 14 115 50 150 4.26e-26 105
Msa0015910 AT3G09370.1 42.208 154 67 5 12 148 128 276 4.39e-26 107
Msa0015910 AT3G09370.1 34.351 131 79 3 14 143 78 202 2.59e-14 72.8
Msa0015910 AT5G67300.1 38.356 146 87 2 14 159 6 148 8.37e-26 103
Msa0015910 AT3G27785.1 47.525 101 52 1 8 108 183 282 6.33e-25 103
Msa0015910 AT4G18770.1 36.806 144 70 3 8 149 211 335 8.15e-25 102
Msa0015910 AT5G11510.3 46.789 109 49 2 12 116 79 182 8.30e-25 104
Msa0015910 AT5G11510.3 36.000 100 62 2 14 112 29 127 2.55e-14 73.2
Msa0015910 AT5G11510.1 46.789 109 49 2 12 116 79 182 8.30e-25 104
Msa0015910 AT5G11510.1 36.000 100 62 2 14 112 29 127 2.55e-14 73.2
Msa0015910 AT5G11510.4 46.789 109 49 2 12 116 79 182 8.30e-25 104
Msa0015910 AT5G11510.4 36.000 100 62 2 14 112 29 127 2.55e-14 73.2
Msa0015910 AT1G22640.3 62.857 70 25 1 58 127 1 69 8.47e-25 98.6
Msa0015910 AT1G66380.3 62.500 72 27 0 44 115 7 78 9.77e-25 95.5
Msa0015910 AT5G11510.2 46.789 109 49 2 12 116 79 182 1.07e-24 103
Msa0015910 AT5G11510.2 36.000 100 62 2 14 112 29 127 2.43e-14 73.2
Msa0015910 AT5G11510.5 46.789 109 49 2 12 116 79 182 1.36e-24 103
Msa0015910 AT5G11510.5 36.000 100 62 2 14 112 29 127 3.11e-14 72.8
Msa0015910 AT5G02320.1 44.828 116 60 2 12 124 125 239 1.95e-24 102
Msa0015910 AT5G02320.1 34.000 100 64 2 14 112 75 173 9.98e-13 68.2
Msa0015910 AT5G02320.2 44.828 116 60 2 12 124 125 239 1.95e-24 102
Msa0015910 AT5G02320.2 34.000 100 64 2 14 112 75 173 9.98e-13 68.2
Msa0015910 AT1G66380.2 54.217 83 38 0 10 92 6 88 2.34e-24 94.7
Msa0015910 AT5G02320.3 44.828 116 60 2 12 124 65 179 2.72e-24 102
Msa0015910 AT5G02320.3 34.000 100 64 2 14 112 15 113 1.24e-12 67.8
Msa0015910 AT1G17950.1 48.544 103 50 2 14 115 5 105 3.49e-24 98.2
Msa0015910 AT4G33450.1 41.593 113 60 2 3 115 13 119 6.16e-24 97.4
Msa0015910 AT5G40360.1 34.682 173 90 4 8 175 152 306 1.17e-23 99.0
Msa0015910 AT1G18960.1 44.828 116 57 4 1 116 1 109 4.23e-23 96.7
Msa0015910 AT5G58850.1 46.465 99 52 1 10 108 101 198 4.52e-23 98.2
Msa0015910 AT4G32730.5 42.857 105 59 1 12 116 85 188 4.74e-23 99.0
Msa0015910 AT4G32730.5 37.000 100 61 2 14 112 35 133 5.40e-14 72.4
Msa0015910 AT4G32730.4 42.857 105 59 1 12 116 85 188 4.74e-23 99.0
Msa0015910 AT4G32730.4 37.000 100 61 2 14 112 35 133 5.40e-14 72.4
Msa0015910 AT4G32730.3 42.857 105 59 1 12 116 85 188 4.74e-23 99.0
Msa0015910 AT4G32730.3 37.000 100 61 2 14 112 35 133 5.40e-14 72.4
Msa0015910 AT4G32730.2 42.857 105 59 1 12 116 85 188 4.74e-23 99.0
Msa0015910 AT4G32730.2 37.000 100 61 2 14 112 35 133 5.40e-14 72.4
Msa0015910 AT4G32730.1 42.857 105 59 1 12 116 85 188 5.18e-23 99.0
Msa0015910 AT4G32730.1 37.000 100 61 2 14 112 35 133 5.98e-14 72.0
Msa0015910 AT1G69560.2 33.766 154 94 3 9 161 118 264 1.45e-22 95.5
Msa0015910 AT1G69560.1 33.766 154 94 3 9 161 102 248 1.48e-22 95.5
Msa0015910 AT5G14750.4 61.017 59 23 0 58 116 1 59 2.35e-22 90.5
Msa0015910 AT5G14750.2 61.017 59 23 0 58 116 1 59 2.35e-22 90.5
Msa0015910 AT3G29020.1 40.777 103 60 1 14 116 65 166 2.50e-22 92.8
Msa0015910 AT3G29020.2 40.777 103 60 1 14 116 67 168 4.33e-22 93.6
Msa0015910 AT5G11050.1 32.227 211 106 6 10 201 101 293 4.44e-22 95.1
Msa0015910 AT1G71030.1 40.000 115 65 2 35 146 4 117 6.52e-22 90.9
Msa0015910 AT1G71030.2 42.424 99 54 1 51 146 5 103 6.99e-22 90.5
Msa0015910 AT1G73410.1 47.664 107 53 2 14 119 6 110 8.27e-22 91.7
Msa0015910 AT5G17800.1 42.157 102 58 1 14 115 93 193 1.34e-21 92.8
Msa0015910 AT1G26780.1 43.810 105 56 2 12 115 96 198 1.44e-21 91.7
Msa0015910 AT1G26780.2 43.810 105 56 2 12 115 96 198 1.93e-21 92.8
Msa0015910 AT1G73410.2 47.222 108 54 2 14 120 6 111 1.98e-21 89.7
Msa0015910 AT4G00540.2 40.741 108 60 2 12 116 101 207 2.61e-18 84.3
Msa0015910 AT4G00540.2 34.579 107 62 2 14 112 46 152 3.33e-13 69.3
Msa0015910 AT5G39700.1 40.777 103 60 1 8 110 50 151 3.99e-18 80.5
Msa0015910 AT4G00540.1 40.741 108 60 2 12 116 99 205 4.35e-18 84.0
Msa0015910 AT4G00540.1 34.579 107 62 2 14 112 44 150 5.30e-13 68.9
Msa0015910 AT2G37630.1 38.614 101 60 1 17 115 7 107 5.50e-18 83.2
Msa0015910 AT1G14350.2 40.171 117 68 2 17 132 28 143 1.02e-17 82.8
Msa0015910 AT1G14350.1 40.171 117 68 2 17 132 28 143 1.02e-17 82.8
Msa0015910 AT2G25230.1 40.179 112 63 3 8 118 20 128 1.86e-17 79.7
Msa0015910 AT2G02820.3 41.414 99 57 1 17 115 33 130 1.89e-16 78.6
Msa0015910 AT4G25560.2 66.038 53 18 0 71 123 3 55 2.60e-16 76.3
Msa0015910 AT2G02820.2 40.404 99 58 1 17 115 33 130 2.82e-16 78.6
Msa0015910 AT2G02820.1 40.404 99 58 1 17 115 33 130 3.20e-16 78.6
Msa0015910 AT5G40430.1 35.398 113 68 4 7 118 47 155 7.74e-14 70.1
Msa0015910 AT1G16490.2 50.000 80 35 3 77 155 12 87 1.39e-13 68.6
Msa0015910 AT5G59780.1 60.465 43 17 0 73 115 4 46 9.84e-13 65.5
Msa0015910 AT3G46130.2 60.465 43 17 0 73 115 4 46 1.45e-12 65.5
Msa0015910 AT3G18100.1 34.375 96 62 1 13 108 545 639 1.51e-11 65.1
Msa0015910 AT3G18100.3 34.375 96 62 1 13 108 497 591 1.79e-11 64.7
Msa0015910 AT3G18100.4 34.375 96 62 1 13 108 384 478 1.80e-11 64.7
Msa0015910 AT3G18100.2 34.375 96 62 1 13 108 332 426 2.18e-11 64.3
Msa0015910 AT5G61420.1 70.270 37 11 0 81 117 2 38 7.59e-11 61.6
Msa0015910 AT1G74650.3 65.000 40 14 0 78 117 2 41 8.49e-11 61.2
Msa0015910 AT1G14350.3 42.308 78 44 1 56 132 23 100 8.91e-11 62.0
Msa0015910 AT1G14350.4 42.308 78 44 1 56 132 23 100 8.91e-11 62.0

Find 53 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCATCATCAAAAGGGTTT+TGG 0.270158 1_1:+26092715 None:intergenic
ATTTCAAGGAAATGATTATT+AGG 0.271577 1_1:+26092981 None:intergenic
TGAAAAGAAGGGATTGAAAA+AGG 0.278369 1_1:-26096963 Msa0015910:CDS
TGAATTGGGTTGGTTATTAT+TGG 0.287497 1_1:+26093094 None:intergenic
ATTTCATTGTCTGTTCTTCC+AGG 0.290962 1_1:+26093161 None:intergenic
TGATGATGATTTGATGTAAA+AGG 0.296149 1_1:-26092490 Msa0015910:three_prime_UTR
TAATAATCATTTCCTTGAAA+TGG 0.306420 1_1:-26092979 Msa0015910:CDS
TTAAAATTGTATTGTTGATC+TGG 0.320458 1_1:+26092756 None:intergenic
AAATTTCCTCTCTTAATATC+AGG 0.325119 1_1:+26096652 None:intergenic
GAACAAATACCTGCATGTTT+TGG 0.334771 1_1:+26096863 None:intergenic
TTGAAATTGATGAAAGCTTT+TGG 0.341700 1_1:-26092851 Msa0015910:CDS
TTTAATTTGTTCGTTTCAAT+AGG 0.345261 1_1:-26092546 Msa0015910:three_prime_UTR
TTGTAACAGATTATATCATT+AGG 0.363648 1_1:-26092399 Msa0015910:intron
ATGATGTAGTTTCCATTTCA+AGG 0.368426 1_1:+26092967 None:intergenic
TTCAGTTATAGTGCTGGAAT+TGG 0.372489 1_1:+26093025 None:intergenic
GAGGATTTCATCTTCCTCTA+AGG 0.392145 1_1:+26096931 None:intergenic
ATTGTCACAAATGAATCTTC+AGG 0.397071 1_1:+26092876 None:intergenic
TGCATGAGTCACTGGGGAAC+AGG 0.418688 1_1:-26096597 Msa0015910:intron
AAAGGGTCCTTGGACCTTAG+AGG 0.420566 1_1:-26096945 Msa0015910:CDS
CATCAAGATGCATGAGTCAC+TGG 0.430430 1_1:-26096605 Msa0015910:CDS
GAAACTGTCATAGAATTTGA+AGG 0.435165 1_1:+26092789 None:intergenic
TGATTATTAGGAGTATTAGA+AGG 0.437665 1_1:+26092993 None:intergenic
GGCTCCTTGTTGTGAAAAGA+AGG 0.442620 1_1:-26096975 Msa0015910:CDS
CATTGTCATTCATTAGTAAA+GGG 0.443938 1_1:-26092513 Msa0015910:three_prime_UTR
GTTGACGTGTTCATCAAATC+AGG 0.454653 1_1:-26092675 Msa0015910:CDS
ATGCCATCATCATCATCAAA+AGG 0.459761 1_1:+26092708 None:intergenic
ATAAACATGGACATAGCAAT+TGG 0.459805 1_1:-26096895 Msa0015910:CDS
GCCATAGCAGCAAAATTGCC+TGG 0.464914 1_1:-26093179 Msa0015910:CDS
ACATTGTCATTCATTAGTAA+AGG 0.478378 1_1:-26092514 Msa0015910:three_prime_UTR
ATGATGTAAGTCTAAAACTC+TGG 0.484409 1_1:+26092636 None:intergenic
GATGATGATTTGATGTAAAA+GGG 0.509006 1_1:-26092489 Msa0015910:three_prime_UTR
ATATGATTCAGTTATAGTGC+TGG 0.510879 1_1:+26093019 None:intergenic
GTTCGTTTCAATAGGCGAAA+GGG 0.515285 1_1:-26092538 Msa0015910:three_prime_UTR
TTTGCAGGTTTATTAAGATG+TGG 0.531442 1_1:-26096712 Msa0015910:intron
TGTTCGTTTCAATAGGCGAA+AGG 0.537267 1_1:-26092539 Msa0015910:three_prime_UTR
ATCAAGATGCATGAGTCACT+GGG 0.537633 1_1:-26096604 Msa0015910:CDS
TGCCATCATCATCATCAAAA+GGG 0.537845 1_1:+26092709 None:intergenic
TTTGAATACTTCACATAACT+CGG 0.544237 1_1:+26092339 None:intergenic
TTGTCACAAATGAATCTTCA+GGG 0.549007 1_1:+26092877 None:intergenic
TCATCTTCCTCTAAGGTCCA+AGG 0.559081 1_1:+26096938 None:intergenic
GAAAGAGTTGTCGATTGAGA+TGG 0.564322 1_1:-26096690 Msa0015910:CDS
TTAAAACCTGATATTAAGAG+AGG 0.565110 1_1:-26096658 Msa0015910:CDS
CGAGACAATTAAACAAAACA+AGG 0.574163 1_1:+26092303 None:intergenic
GCTCCTTGTTGTGAAAAGAA+GGG 0.589438 1_1:-26096974 Msa0015910:CDS
CATCTTGAAAATGAGACAAG+AGG 0.606998 1_1:+26097003 None:intergenic
CGTGCCCTACCAAAACATGC+AGG 0.611878 1_1:-26096872 Msa0015910:intron
TGTCATAGAATTTGAAGGCA+CGG 0.616610 1_1:+26092794 None:intergenic
ACATCATACATCAATAAACA+TGG 0.617616 1_1:-26096908 Msa0015910:CDS
ATCTTGAAAATGAGACAAGA+GGG 0.618926 1_1:+26097004 None:intergenic
GTTTATTGATGTATGATGTG+AGG 0.651160 1_1:+26096912 None:intergenic
AGTAACACACCATCAAAATG+TGG 0.666486 1_1:+26092611 None:intergenic
CATAGAATTTGAAGGCACGG+TGG 0.716986 1_1:+26092797 None:intergenic
TCAAGATGCATGAGTCACTG+GGG 0.758088 1_1:-26096603 Msa0015910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAATTAATTTATAA+AGG - chr1_1:26093123-26093142 Msa0015910:CDS 0.0%
!!! TAGATATAATATTATACTTT+TGG - chr1_1:26092593-26092612 Msa0015910:three_prime_UTR 10.0%
!!! AGATATAATATTATACTTTT+GGG - chr1_1:26092594-26092613 Msa0015910:three_prime_UTR 10.0%
!! CTTGATAAATATTACTTTAT+AGG - chr1_1:26092544-26092563 Msa0015910:three_prime_UTR 15.0%
!!! TTTGTTTTTAAAACTGAATT+TGG - chr1_1:26092929-26092948 Msa0015910:CDS 15.0%
!!! TTGTTTTTAAAACTGAATTT+GGG - chr1_1:26092930-26092949 Msa0015910:CDS 15.0%
!! GTGTAGTTTAATATATAAAA+TGG - chr1_1:26095810-26095829 Msa0015910:intron 15.0%
!! ATCAAAATTAAGATAATACT+AGG - chr1_1:26095902-26095921 Msa0015910:intron 15.0%
!! ACAATGAAATAAAAAATGTA+TGG - chr1_1:26096230-26096249 Msa0015910:intron 15.0%
!!! ATACAATTTTAATAATTCAG+TGG - chr1_1:26096633-26096652 Msa0015910:CDS 15.0%
!!! ATTATACTTTTGGGATAATT+TGG - chr1_1:26092603-26092622 Msa0015910:three_prime_UTR 20.0%
!!! AAATTTTTCAAATGAAGAAG+AGG - chr1_1:26092743-26092762 Msa0015910:CDS 20.0%
!! AGGTAATACATATATTCAAT+TGG - chr1_1:26092801-26092820 Msa0015910:CDS 20.0%
!! CTTATGTAGAATTGTAATTA+TGG + chr1_1:26094455-26094474 None:intergenic 20.0%
!! CATAATTACAATTCTACATA+AGG - chr1_1:26094453-26094472 Msa0015910:intron 20.0%
!! AACAAATCAATAACAGAAAA+CGG - chr1_1:26095366-26095385 Msa0015910:intron 20.0%
!!! TTGCAATAAACAACAAATTT+TGG + chr1_1:26096043-26096062 None:intergenic 20.0%
!! AATATTTAATTCTTGCTTTC+AGG - chr1_1:26096170-26096189 Msa0015910:intron 20.0%
!!! TTGTTTTGATACTCTTTTTT+TGG + chr1_1:26096314-26096333 None:intergenic 20.0%
!! ATTTCAAGGAAATGATTATT+AGG + chr1_1:26096400-26096419 None:intergenic 20.0%
!! TAATAATCATTTCCTTGAAA+TGG - chr1_1:26096399-26096418 Msa0015910:intron 20.0%
!! TTAAAATTGTATTGTTGATC+TGG + chr1_1:26096625-26096644 None:intergenic 20.0%
!!! TTTAATTTGTTCGTTTCAAT+AGG - chr1_1:26096832-26096851 Msa0015910:intron 20.0%
!! TTGTAACAGATTATATCATT+AGG - chr1_1:26096979-26096998 Msa0015910:CDS 20.0%
! ACATCATACATCAATAAACA+TGG - chr1_1:26092470-26092489 Msa0015910:three_prime_UTR 25.0%
!!! TATCTTTTGTGTGTTGATTT+AGG - chr1_1:26092633-26092652 Msa0015910:exon 25.0%
!!! TTAGGTTTTGTAAATTTTGC+AGG - chr1_1:26092651-26092670 Msa0015910:CDS 25.0%
! TTAAAACCTGATATTAAGAG+AGG - chr1_1:26092720-26092739 Msa0015910:CDS 25.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1_1:26092729-26092748 None:intergenic 25.0%
!! AAGACTACAAATTCTGAAAA+AGG + chr1_1:26092862-26092881 None:intergenic 25.0%
! TGTTTCTTATAACTGCATTT+CGG - chr1_1:26092999-26093018 Msa0015910:CDS 25.0%
! TTGTGAATTCTTTCTATTGA+TGG - chr1_1:26093203-26093222 Msa0015910:intron 25.0%
! TTACACCTATATATACTAGT+GGG - chr1_1:26093273-26093292 Msa0015910:intron 25.0%
!!! TTGGATATCATCATTGATTT+TGG + chr1_1:26093627-26093646 None:intergenic 25.0%
!! ATTTGGTTTAGCTTCATTAT+TGG + chr1_1:26094009-26094028 None:intergenic 25.0%
!!! TGAAGACTATTTTTTGGATT+TGG + chr1_1:26094026-26094045 None:intergenic 25.0%
!!! GACAATTGAAGACTATTTTT+TGG + chr1_1:26094032-26094051 None:intergenic 25.0%
! AATAGCCAGAAACAAATAAT+AGG - chr1_1:26094054-26094073 Msa0015910:intron 25.0%
!!! AAGTGCTTTTGATTCAAATT+TGG + chr1_1:26095120-26095139 None:intergenic 25.0%
! TCGATCGATAAAAAATGTAA+AGG - chr1_1:26095300-26095319 Msa0015910:intron 25.0%
! TGAAAGGAGAAAAAGAAAAT+TGG - chr1_1:26095481-26095500 Msa0015910:intron 25.0%
! TTGTGAATTCTTTCTATTGA+TGG - chr1_1:26093203-26093222 Msa0015910:intron 25.0%
! TTACACCTATATATACTAGT+GGG - chr1_1:26093273-26093292 Msa0015910:intron 25.0%
!!! CTTTTTTTGGTGTTTGAATT+GGG + chr1_1:26096301-26096320 None:intergenic 25.0%
!!! TCTTTTTTTGGTGTTTGAAT+TGG + chr1_1:26096302-26096321 None:intergenic 25.0%
!!! TGATTATTAGGAGTATTAGA+AGG + chr1_1:26096388-26096407 None:intergenic 25.0%
! TTCATCACAAGGAAAAAATT+TGG - chr1_1:26096459-26096478 Msa0015910:intron 25.0%
!! TTGAAATTGATGAAAGCTTT+TGG - chr1_1:26096527-26096546 Msa0015910:intron 25.0%
! ACATTGTCATTCATTAGTAA+AGG - chr1_1:26096864-26096883 Msa0015910:intron 25.0%
! CATTGTCATTCATTAGTAAA+GGG - chr1_1:26096865-26096884 Msa0015910:intron 25.0%
!! TGATGATGATTTGATGTAAA+AGG - chr1_1:26096888-26096907 Msa0015910:CDS 25.0%
! GATGATGATTTGATGTAAAA+GGG - chr1_1:26096889-26096908 Msa0015910:CDS 25.0%
! TTTGAATACTTCACATAACT+CGG + chr1_1:26097042-26097061 None:intergenic 25.0%
ATCTTGAAAATGAGACAAGA+GGG + chr1_1:26092377-26092396 None:intergenic 30.0%
!! TCTCATTTTCAAGATGGTTA+GGG - chr1_1:26092382-26092401 Msa0015910:three_prime_UTR 30.0%
TGAAAAGAAGGGATTGAAAA+AGG - chr1_1:26092415-26092434 Msa0015910:intron 30.0%
GAAAAGAAGGGATTGAAAAA+GGG - chr1_1:26092416-26092435 Msa0015910:intron 30.0%
GTTTATTGATGTATGATGTG+AGG + chr1_1:26092469-26092488 None:intergenic 30.0%
ATAAACATGGACATAGCAAT+TGG - chr1_1:26092483-26092502 Msa0015910:three_prime_UTR 30.0%
TTTGCAGGTTTATTAAGATG+TGG - chr1_1:26092666-26092685 Msa0015910:CDS 30.0%
AAGTCTTAACCTCATATAGT+AGG - chr1_1:26092882-26092901 Msa0015910:CDS 30.0%
AGCAGACAATATTTAAGTAG+TGG - chr1_1:26093087-26093106 Msa0015910:CDS 30.0%
GCAGACAATATTTAAGTAGT+GGG - chr1_1:26093088-26093107 Msa0015910:CDS 30.0%
CAGACAATATTTAAGTAGTG+GGG - chr1_1:26093089-26093108 Msa0015910:CDS 30.0%
AGACAATATTTAAGTAGTGG+GGG - chr1_1:26093090-26093109 Msa0015910:CDS 30.0%
GTTACACCTATATATACTAG+TGG - chr1_1:26093272-26093291 Msa0015910:intron 30.0%
TTAGTCCCACTAGTATATAT+AGG + chr1_1:26093281-26093300 None:intergenic 30.0%
! TGTATTTTCTCACTTCAAGT+TGG + chr1_1:26093371-26093390 None:intergenic 30.0%
ACTTGAAGTGAGAAAATACA+AGG - chr1_1:26093371-26093390 Msa0015910:intron 30.0%
!!! TTTTTTAGCCGATGTATTTC+CGG + chr1_1:26093404-26093423 None:intergenic 30.0%
!! TCAATTGGCTTTGTTGATAT+TGG + chr1_1:26093532-26093551 None:intergenic 30.0%
AATATCAACAAAGCCAATTG+AGG - chr1_1:26093531-26093550 Msa0015910:intron 30.0%
!!! GCATTTGGTTTTTCTTATCT+CGG + chr1_1:26093746-26093765 None:intergenic 30.0%
GATAAGAAAAACCAAATGCA+AGG - chr1_1:26093747-26093766 Msa0015910:intron 30.0%
!! CAACATGGATTTGTTTTCTA+TGG + chr1_1:26093953-26093972 None:intergenic 30.0%
!!! ATTATTGGAAGCATTGGTTT+TGG + chr1_1:26093994-26094013 None:intergenic 30.0%
TTTGGCCTATTATTTGTTTC+TGG + chr1_1:26094062-26094081 None:intergenic 30.0%
!! TTGGATTGATTACTTTTCCA+TGG + chr1_1:26094137-26094156 None:intergenic 30.0%
ATGTAGAACGCATAAAAGAA+GGG - chr1_1:26094223-26094242 Msa0015910:intron 30.0%
! AGAGATTTTATCGAAGTGTA+TGG + chr1_1:26094348-26094367 None:intergenic 30.0%
!! TTTTTAGCCATCTATCATTG+TGG + chr1_1:26094389-26094408 None:intergenic 30.0%
GCAATTTCAACATATCTTGT+TGG + chr1_1:26094426-26094445 None:intergenic 30.0%
! TCTATGTTGGTTATTGCTTA+TGG + chr1_1:26094503-26094522 None:intergenic 30.0%
! TTTGGAACTTTGATCTATGT+TGG + chr1_1:26094516-26094535 None:intergenic 30.0%
AACATAGATCAAAGTTCCAA+AGG - chr1_1:26094515-26094534 Msa0015910:intron 30.0%
TACTTTCTTATACACACCTT+TGG + chr1_1:26094534-26094553 None:intergenic 30.0%
ATACATTTGTGAAACTTGGT+TGG + chr1_1:26094575-26094594 None:intergenic 30.0%
TGTATCTCCAAACCAATAAT+TGG - chr1_1:26094590-26094609 Msa0015910:intron 30.0%
! AGTAATTTCGGTTCAGATTT+TGG + chr1_1:26094934-26094953 None:intergenic 30.0%
! TGTCTTTTTCCCAAATCTTA+GGG + chr1_1:26095260-26095279 None:intergenic 30.0%
AATCGAATGAAATTGAGATG+CGG - chr1_1:26095323-26095342 Msa0015910:intron 30.0%
AAAGAAAATTGGAACGAGAA+AGG - chr1_1:26095492-26095511 Msa0015910:intron 30.0%
! ATTTTCTCAAGAAAATGCAG+CGG - chr1_1:26095540-26095559 Msa0015910:intron 30.0%
TGATACCATGTTATGAAACA+TGG - chr1_1:26095597-26095616 Msa0015910:intron 30.0%
GTTACACCTATATATACTAG+TGG - chr1_1:26093272-26093291 Msa0015910:intron 30.0%
TTAGTCCCACTAGTATATAT+AGG + chr1_1:26093281-26093300 None:intergenic 30.0%
!!! CAAATTTTGGTTGCATTGAT+TGG + chr1_1:26096030-26096049 None:intergenic 30.0%
ATTTAATTCTTGCTTTCAGG+TGG - chr1_1:26096173-26096192 Msa0015910:intron 30.0%
!! TGAATTGGGTTGGTTATTAT+TGG + chr1_1:26096287-26096306 None:intergenic 30.0%
ATATGATTCAGTTATAGTGC+TGG + chr1_1:26096362-26096381 None:intergenic 30.0%
ATGATGTAGTTTCCATTTCA+AGG + chr1_1:26096414-26096433 None:intergenic 30.0%
! TCTAGTGATTTTTCATCACA+AGG - chr1_1:26096448-26096467 Msa0015910:intron 30.0%
TTGTCACAAATGAATCTTCA+GGG + chr1_1:26096504-26096523 None:intergenic 30.0%
ATTGTCACAAATGAATCTTC+AGG + chr1_1:26096505-26096524 None:intergenic 30.0%
GAAACTGTCATAGAATTTGA+AGG + chr1_1:26096592-26096611 None:intergenic 30.0%
! ATGATGTAAGTCTAAAACTC+TGG + chr1_1:26096745-26096764 None:intergenic 30.0%
ATATACTGTGCAAAAACATC+AGG - chr1_1:26096936-26096955 Msa0015910:CDS 30.0%
CATCTTGAAAATGAGACAAG+AGG + chr1_1:26092378-26092397 None:intergenic 35.0%
!! CTCTTGTCTCATTTTCAAGA+TGG - chr1_1:26092376-26092395 Msa0015910:three_prime_UTR 35.0%
!! GTCTCATTTTCAAGATGGTT+AGG - chr1_1:26092381-26092400 Msa0015910:three_prime_UTR 35.0%
! AATCCCTTCTTTTCACAACA+AGG + chr1_1:26092410-26092429 None:intergenic 35.0%
!!! AATACCTGCATGTTTTGGTA+GGG + chr1_1:26092513-26092532 None:intergenic 35.0%
!!! AAATACCTGCATGTTTTGGT+AGG + chr1_1:26092514-26092533 None:intergenic 35.0%
! GAACAAATACCTGCATGTTT+TGG + chr1_1:26092518-26092537 None:intergenic 35.0%
! GACAATATTTAAGTAGTGGG+GGG - chr1_1:26093091-26093110 Msa0015910:CDS 35.0%
AAGCTGTGTGTTATGAAACA+TGG - chr1_1:26093154-26093173 Msa0015910:CDS 35.0%
GAAAATACAAGGAAAGATGC+CGG - chr1_1:26093382-26093401 Msa0015910:intron 35.0%
! TGGTTGATTCTTCCTTCAAT+TGG + chr1_1:26093480-26093499 None:intergenic 35.0%
!! TTGTTGATATTGGCTTCTAC+CGG + chr1_1:26093522-26093541 None:intergenic 35.0%
! GATATCCAAAAAGAAGTGCA+AGG - chr1_1:26093638-26093657 Msa0015910:intron 35.0%
AGAGGTTATATACAAGACCA+AGG - chr1_1:26093684-26093703 Msa0015910:intron 35.0%
!!! CACTTTTATCTTTGGAACCT+TGG + chr1_1:26093704-26093723 None:intergenic 35.0%
CAAGGTTCCAAAGATAAAAG+TGG - chr1_1:26093702-26093721 Msa0015910:intron 35.0%
TGAACAAACTTCACACCAAA+AGG - chr1_1:26093806-26093825 Msa0015910:intron 35.0%
!! CACTTTTATCTTTGGAAGCT+TGG + chr1_1:26093849-26093868 None:intergenic 35.0%
!!! GCCATTGGTTTTTTTTGTCT+CGG + chr1_1:26093890-26093909 None:intergenic 35.0%
ATGGTTTGAATGCATCAACA+TGG + chr1_1:26093968-26093987 None:intergenic 35.0%
TGTTGATGCATTCAAACCAT+AGG - chr1_1:26093968-26093987 Msa0015910:intron 35.0%
! AGCTTCATTATTGGAAGCAT+TGG + chr1_1:26094000-26094019 None:intergenic 35.0%
TTGGATTGTTGGAAGATTCT+TGG + chr1_1:26094156-26094175 None:intergenic 35.0%
!!! TTATGATTCTGGCTCAGTTT+TGG + chr1_1:26094175-26094194 None:intergenic 35.0%
! CTTCTTTTATGCGTTCTACA+TGG + chr1_1:26094224-26094243 None:intergenic 35.0%
CATGTAGAACGCATAAAAGA+AGG - chr1_1:26094222-26094241 Msa0015910:intron 35.0%
AAGAAAGCCACATAGACTTA+AGG - chr1_1:26094281-26094300 Msa0015910:intron 35.0%
TTATACGCCTTAAGTCTATG+TGG + chr1_1:26094291-26094310 None:intergenic 35.0%
ACATAGACTTAAGGCGTATA+AGG - chr1_1:26094290-26094309 Msa0015910:intron 35.0%
CATAGACTTAAGGCGTATAA+GGG - chr1_1:26094291-26094310 Msa0015910:intron 35.0%
GTGTATGGTGTAAGATTGAA+TGG + chr1_1:26094333-26094352 None:intergenic 35.0%
!! ATCTCTTGAAAAAGTGCCTT+AGG - chr1_1:26094362-26094381 Msa0015910:intron 35.0%
GAACTTAGATGCTGAATACA+TGG + chr1_1:26094479-26094498 None:intergenic 35.0%
GGAGATACATTTGTGAAACT+TGG + chr1_1:26094579-26094598 None:intergenic 35.0%
! TGGATTGCCAATTATTGGTT+TGG + chr1_1:26094600-26094619 None:intergenic 35.0%
! ACTTGTGGATTGCCAATTAT+TGG + chr1_1:26094605-26094624 None:intergenic 35.0%
! GAGGTATCTTCTTATACTTG+TGG + chr1_1:26094620-26094639 None:intergenic 35.0%
TCAGCATATACACAACCAAA+GGG - chr1_1:26094647-26094666 Msa0015910:intron 35.0%
!! AGTGCATTGGTTTCTCAATT+TGG + chr1_1:26094685-26094704 None:intergenic 35.0%
TTGAGAAACCAATGCACTAA+AGG - chr1_1:26094687-26094706 Msa0015910:intron 35.0%
TCAGAAGTTATTTGTTCAGC+TGG + chr1_1:26094754-26094773 None:intergenic 35.0%
AACCAATAAGTCTTCCATTG+AGG - chr1_1:26094779-26094798 Msa0015910:intron 35.0%
! TGTTTGTTGAAAGTCCTCAA+TGG + chr1_1:26094796-26094815 None:intergenic 35.0%
!! GCTTTTAGGAGGAGTAATTT+CGG + chr1_1:26094946-26094965 None:intergenic 35.0%
!! TTTTGTGAAGTGCTTTTAGG+AGG + chr1_1:26094957-26094976 None:intergenic 35.0%
!! CTGTTTTGTGAAGTGCTTTT+AGG + chr1_1:26094960-26094979 None:intergenic 35.0%
ATGTCCAAATCTATTTCCAC+TGG - chr1_1:26094994-26095013 Msa0015910:intron 35.0%
TCGAATTGCGAATTGAACAA+AGG - chr1_1:26095192-26095211 Msa0015910:intron 35.0%
AATCGCAAACCCTAAGATTT+GGG - chr1_1:26095248-26095267 Msa0015910:intron 35.0%
! GTGTCTTTTTCCCAAATCTT+AGG + chr1_1:26095261-26095280 None:intergenic 35.0%
TCAAGAACAACAGAAAACGA+AGG - chr1_1:26095454-26095473 Msa0015910:intron 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1_1:26096220-26096239 None:intergenic 35.0%
!!! TTTTGGTGTTTGAATTGGGT+TGG + chr1_1:26096297-26096316 None:intergenic 35.0%
! TTCAGTTATAGTGCTGGAAT+TGG + chr1_1:26096356-26096375 None:intergenic 35.0%
TGTCATAGAATTTGAAGGCA+CGG + chr1_1:26096587-26096606 None:intergenic 35.0%
! CATCATCATCAAAAGGGTTT+TGG + chr1_1:26096666-26096685 None:intergenic 35.0%
!!! AACCCTTTTGATGATGATGA+TGG - chr1_1:26096667-26096686 Msa0015910:CDS 35.0%
TGCCATCATCATCATCAAAA+GGG + chr1_1:26096672-26096691 None:intergenic 35.0%
ATGCCATCATCATCATCAAA+AGG + chr1_1:26096673-26096692 None:intergenic 35.0%
!!! TTTTGATGATGATGATGGCA+TGG - chr1_1:26096672-26096691 Msa0015910:CDS 35.0%
!!! ATGATGATGGCATGGATTTT+TGG - chr1_1:26096680-26096699 Msa0015910:CDS 35.0%
!!! TGATGATGGCATGGATTTTT+GGG - chr1_1:26096681-26096700 Msa0015910:CDS 35.0%
! ACATCATGACCACATTTTGA+TGG - chr1_1:26096758-26096777 Msa0015910:intron 35.0%
AGTAACACACCATCAAAATG+TGG + chr1_1:26096770-26096789 None:intergenic 35.0%
! GCTCCTTGTTGTGAAAAGAA+GGG - chr1_1:26092404-26092423 Msa0015910:intron 40.0%
GAGGATTTCATCTTCCTCTA+AGG + chr1_1:26092450-26092469 None:intergenic 40.0%
! GAAAGAGTTGTCGATTGAGA+TGG - chr1_1:26092688-26092707 Msa0015910:CDS 40.0%
ATCAAGATGCATGAGTCACT+GGG - chr1_1:26092774-26092793 Msa0015910:CDS 40.0%
AGCTAGCATCCTACTATATG+AGG + chr1_1:26092894-26092913 None:intergenic 40.0%
AACATGGCATCCATTGATGA+AGG - chr1_1:26093170-26093189 Msa0015910:CDS 40.0%
! GCTTTTCTCTCCTTCATCAA+TGG + chr1_1:26093183-26093202 None:intergenic 40.0%
ACTAGTGGGACTAATACTAG+TGG - chr1_1:26093287-26093306 Msa0015910:intron 40.0%
TTGAACACCTTCCAACTTGA+GGG + chr1_1:26093341-26093360 None:intergenic 40.0%
TTTGAACACCTTCCAACTTG+AGG + chr1_1:26093342-26093361 None:intergenic 40.0%
GAAAGATGCCGGAAATACAT+CGG - chr1_1:26093393-26093412 Msa0015910:intron 40.0%
! ATTGGTTCAACCTTGAGTTG+TGG + chr1_1:26093462-26093481 None:intergenic 40.0%
CTCAAGGTTGAACCAATTGA+AGG - chr1_1:26093465-26093484 Msa0015910:intron 40.0%
GAGTTCTTGAGAACTCTTGA+TGG + chr1_1:26093569-26093588 None:intergenic 40.0%
AGCACAAGACAAGAAGAACA+AGG - chr1_1:26093597-26093616 Msa0015910:intron 40.0%
! CTCTTCCTTGCACTTCTTTT+TGG + chr1_1:26093646-26093665 None:intergenic 40.0%
CCTCTTTCCATTGTAGACTA+TGG + chr1_1:26093669-26093688 None:intergenic 40.0%
CCATAGTCTACAATGGAAAG+AGG - chr1_1:26093666-26093685 Msa0015910:intron 40.0%
!!! AAGGGCACCACTTTTATCTT+TGG + chr1_1:26093712-26093731 None:intergenic 40.0%
! TGGTTTTTCTTATCTCGGCT+CGG + chr1_1:26093741-26093760 None:intergenic 40.0%
!! TTGTTGCTTCATGGTCCTTT+TGG + chr1_1:26093824-26093843 None:intergenic 40.0%
!!! AGCTTGGTTTTGTTGCTTCA+TGG + chr1_1:26093833-26093852 None:intergenic 40.0%
!!! GAGGGCATCACTTTTATCTT+TGG + chr1_1:26093857-26093876 None:intergenic 40.0%
!!! TGGTTTTTTTTGTCTCGGCT+TGG + chr1_1:26093885-26093904 None:intergenic 40.0%
GCCGAGACAAAAAAAACCAA+TGG - chr1_1:26093886-26093905 Msa0015910:intron 40.0%
!! CATCTCTATTGGTTTGCCAT+TGG + chr1_1:26093905-26093924 None:intergenic 40.0%
ACATGGCTATGCATCTCTAT+TGG + chr1_1:26093916-26093935 None:intergenic 40.0%
TGGTTTGAAGACACATCACA+TGG + chr1_1:26093933-26093952 None:intergenic 40.0%
! CTTTCTGCAGCTTTGTGATT+TGG + chr1_1:26094080-26094099 None:intergenic 40.0%
TTTCCATGGTTTCTTTGTCC+TGG + chr1_1:26094123-26094142 None:intergenic 40.0%
AATCATAAACCTCACCACCA+AGG - chr1_1:26094187-26094206 Msa0015910:intron 40.0%
! ACATGGCATTTTCATGTCCT+TGG + chr1_1:26094207-26094226 None:intergenic 40.0%
GGCAGATTGTCTTTAACACT+TGG + chr1_1:26094251-26094270 None:intergenic 40.0%
! GTGGCTTTCTTCATCAGTTT+TGG + chr1_1:26094272-26094291 None:intergenic 40.0%
CATCTATCATTGTGGACCTA+AGG + chr1_1:26094381-26094400 None:intergenic 40.0%
CTTAGGTCCACAATGATAGA+TGG - chr1_1:26094379-26094398 Msa0015910:intron 40.0%
! ACTTGGTTGGTGTATAGCAT+GGG + chr1_1:26094562-26094581 None:intergenic 40.0%
! AACTTGGTTGGTGTATAGCA+TGG + chr1_1:26094563-26094582 None:intergenic 40.0%
!! TGTATATGCTGACTTACGAG+AGG + chr1_1:26094639-26094658 None:intergenic 40.0%
GTCAGCATATACACAACCAA+AGG - chr1_1:26094646-26094665 Msa0015910:intron 40.0%
GTCCTCAATGGAAGACTTAT+TGG + chr1_1:26094784-26094803 None:intergenic 40.0%
AGGACTTTCAACAAACACCT+TGG - chr1_1:26094799-26094818 Msa0015910:intron 40.0%
TACCTTGCATATTGCTTCCA+AGG + chr1_1:26094819-26094838 None:intergenic 40.0%
GTGAAATCCATCACAACAAC+TGG - chr1_1:26094857-26094876 Msa0015910:intron 40.0%
GATTGATCCAGTTGTTGTGA+TGG + chr1_1:26094867-26094886 None:intergenic 40.0%
!!! AGATTTTGGAATCGCGTTTC+TGG + chr1_1:26094920-26094939 None:intergenic 40.0%
GATTTGGACATTTCTCAACC+TGG + chr1_1:26094985-26095004 None:intergenic 40.0%
TCCAAATCTATTTCCACTGG+TGG - chr1_1:26094997-26095016 Msa0015910:intron 40.0%
TCCACCAGTGGAAATAGATT+TGG + chr1_1:26095001-26095020 None:intergenic 40.0%
AACAAAGGATCGTGAGAGAA+AGG - chr1_1:26095207-26095226 Msa0015910:intron 40.0%
GAATCGCAAACCCTAAGATT+TGG - chr1_1:26095247-26095266 Msa0015910:intron 40.0%
! CAGAAAACGGATTCGATTAC+AGG - chr1_1:26095379-26095398 Msa0015910:intron 40.0%
CGGATTCGATTACAGGATAA+AGG - chr1_1:26095386-26095405 Msa0015910:intron 40.0%
! AGAAAACGAAGGAGTGTGAA+AGG - chr1_1:26095465-26095484 Msa0015910:intron 40.0%
AATCTTGGTATCCACCTTGA+AGG + chr1_1:26095573-26095592 None:intergenic 40.0%
ACATGGTATCAGAGCAATCT+TGG + chr1_1:26095588-26095607 None:intergenic 40.0%
GGATGCCATGTTTCATAACA+TGG + chr1_1:26093162-26093181 None:intergenic 40.0%
AACATGGCATCCATTGATGA+AGG - chr1_1:26093170-26093189 Msa0015910:CDS 40.0%
! GCTTTTCTCTCCTTCATCAA+TGG + chr1_1:26093183-26093202 None:intergenic 40.0%
ACTAGTGGGACTAATACTAG+TGG - chr1_1:26093287-26093306 Msa0015910:intron 40.0%
GCATAGTGCTATGTATGTCA+AGG + chr1_1:26096000-26096019 None:intergenic 40.0%
GTTGACGTGTTCATCAAATC+AGG - chr1_1:26096703-26096722 Msa0015910:CDS 40.0%
TGTTCGTTTCAATAGGCGAA+AGG - chr1_1:26096839-26096858 Msa0015910:intron 40.0%
GTTCGTTTCAATAGGCGAAA+GGG - chr1_1:26096840-26096859 Msa0015910:intron 40.0%
! GGCTCCTTGTTGTGAAAAGA+AGG - chr1_1:26092403-26092422 Msa0015910:intron 45.0%
AGGGATTGAAAAAGGGTCCT+TGG - chr1_1:26092423-26092442 Msa0015910:intron 45.0%
!! TCATCTTCCTCTAAGGTCCA+AGG + chr1_1:26092443-26092462 None:intergenic 45.0%
CATCAAGATGCATGAGTCAC+TGG - chr1_1:26092773-26092792 Msa0015910:CDS 45.0%
TCAAGATGCATGAGTCACTG+GGG - chr1_1:26092775-26092794 Msa0015910:CDS 45.0%
TGAGAGAGTTGACCCACTTA+TGG - chr1_1:26093245-26093264 Msa0015910:intron 45.0%
GAGAGAGTTGACCCACTTAT+GGG - chr1_1:26093246-26093265 Msa0015910:intron 45.0%
AGAGAGTTGACCCACTTATG+GGG - chr1_1:26093247-26093266 Msa0015910:intron 45.0%
TCTAATAGTCCCCCTCAAGT+TGG - chr1_1:26093327-26093346 Msa0015910:intron 45.0%
TGAACACCTTCCAACTTGAG+GGG + chr1_1:26093340-26093359 None:intergenic 45.0%
GAGTTGTGGTTGCTTCTTGT+TGG + chr1_1:26093448-26093467 None:intergenic 45.0%
CAAGAAGCAACCACAACTCA+AGG - chr1_1:26093449-26093468 Msa0015910:intron 45.0%
!! TGATATTGGCTTCTACCGGA+TGG + chr1_1:26093518-26093537 None:intergenic 45.0%
! GTTAAGCGTTGTGCCTCAAT+TGG + chr1_1:26093547-26093566 None:intergenic 45.0%
GGAAGAGCCATAGTCTACAA+TGG - chr1_1:26093659-26093678 Msa0015910:intron 45.0%
CTATGGCTCTTCCTTGCATT+TGG + chr1_1:26093761-26093780 None:intergenic 45.0%
GGAAGAGCCATAGTCAACAA+TGG - chr1_1:26093768-26093787 Msa0015910:intron 45.0%
GAGCCATAGTCAACAATGGA+AGG - chr1_1:26093772-26093791 Msa0015910:intron 45.0%
! CCTCCTTCCATTGTTGACTA+TGG + chr1_1:26093778-26093797 None:intergenic 45.0%
CCATAGTCAACAATGGAAGG+AGG - chr1_1:26093775-26093794 Msa0015910:intron 45.0%
!!! TTTTTGTCTCGGCTTGGCAT+AGG + chr1_1:26093879-26093898 None:intergenic 45.0%
!!! GAAGCATTGGTTTTGGCCTA+TGG + chr1_1:26093987-26094006 None:intergenic 45.0%
CTTTGTCCTGGATCGTTGTT+TGG + chr1_1:26094111-26094130 None:intergenic 45.0%
GATCCAGGACAAAGAAACCA+TGG - chr1_1:26094117-26094136 Msa0015910:intron 45.0%
!!! CTGGCTCAGTTTTGGATTGT+TGG + chr1_1:26094167-26094186 None:intergenic 45.0%
GGTGGTGAGGTTTATGATTC+TGG + chr1_1:26094186-26094205 None:intergenic 45.0%
!!! TTTTCATGTCCTTGGTGGTG+AGG + chr1_1:26094199-26094218 None:intergenic 45.0%
! TGGCATTTTCATGTCCTTGG+TGG + chr1_1:26094204-26094223 None:intergenic 45.0%
GCATATACACAACCAAAGGG+AGG - chr1_1:26094650-26094669 Msa0015910:intron 45.0%
TGGTACATTGATCCTCCCTT+TGG + chr1_1:26094665-26094684 None:intergenic 45.0%
GTCAGCTTCCTTTAGTGCAT+TGG + chr1_1:26094698-26094717 None:intergenic 45.0%
CACCTTGGAAGCAATATGCA+AGG - chr1_1:26094814-26094833 Msa0015910:intron 45.0%
GGTACGAATGAAGCTGATCA+AGG - chr1_1:26094835-26094854 Msa0015910:intron 45.0%
GCACTTCACAAAACAGAACC+AGG - chr1_1:26094964-26094983 Msa0015910:intron 45.0%
TCCACTGGTGTAACAGCTTA+TGG - chr1_1:26095051-26095070 Msa0015910:intron 45.0%
TCCATAAGCTGTTACACCAG+TGG + chr1_1:26095055-26095074 None:intergenic 45.0%
GCAGCGGAAAATATCCTTCA+AGG - chr1_1:26095556-26095575 Msa0015910:intron 45.0%
GCGGAAAATATCCTTCAAGG+TGG - chr1_1:26095559-26095578 Msa0015910:intron 45.0%
TGAGAGAGTTGACCCACTTA+TGG - chr1_1:26093245-26093264 Msa0015910:intron 45.0%
GAGAGAGTTGACCCACTTAT+GGG - chr1_1:26093246-26093265 Msa0015910:intron 45.0%
AGAGAGTTGACCCACTTATG+GGG - chr1_1:26093247-26093266 Msa0015910:intron 45.0%
! TCCAGGCAATTTTGCTGCTA+TGG + chr1_1:26096203-26096222 None:intergenic 45.0%
! CATAGAATTTGAAGGCACGG+TGG + chr1_1:26096584-26096603 None:intergenic 45.0%
!!! AATTATACAATTATTTTTTT+AGG - chr1_1:26095953-26095972 Msa0015910:intron 5.0%
AAAGGGTCCTTGGACCTTAG+AGG - chr1_1:26092433-26092452 Msa0015910:intron 50.0%
GGTGTAACCTCCCCATAAGT+GGG + chr1_1:26093260-26093279 None:intergenic 50.0%
AGGTGTAACCTCCCCATAAG+TGG + chr1_1:26093261-26093280 None:intergenic 50.0%
!! ATAGTCCCCCTCAAGTTGGA+AGG - chr1_1:26093331-26093350 Msa0015910:intron 50.0%
GAACACCTTCCAACTTGAGG+GGG + chr1_1:26093339-26093358 None:intergenic 50.0%
! GATGGTGGTTAAGCGTTGCT+TGG + chr1_1:26093500-26093519 None:intergenic 50.0%
AGCAACGCTTAACCACCATC+CGG - chr1_1:26093500-26093519 Msa0015910:intron 50.0%
!! TATTGGCTTCTACCGGATGG+TGG + chr1_1:26093515-26093534 None:intergenic 50.0%
!! TTCTTATCTCGGCTCGGCAT+TGG + chr1_1:26093735-26093754 None:intergenic 50.0%
ACCACTCCAAACAACGATCC+AGG - chr1_1:26094102-26094121 Msa0015910:intron 50.0%
TCCTGGATCGTTGTTTGGAG+TGG + chr1_1:26094106-26094125 None:intergenic 50.0%
GGATCATCATCTTCCACCAG+TGG + chr1_1:26095013-26095032 None:intergenic 50.0%
GGTGGAAGATGATGATCCAC+TGG - chr1_1:26095015-26095034 Msa0015910:intron 50.0%
GGAAGATGATGATCCACTGG+TGG - chr1_1:26095018-26095037 Msa0015910:intron 50.0%
GGATCATCATCTTCCACCAG+TGG + chr1_1:26095013-26095032 None:intergenic 50.0%
GGTGGAAGATGATGATCCAC+TGG - chr1_1:26095015-26095034 Msa0015910:intron 50.0%
GGTGTAACCTCCCCATAAGT+GGG + chr1_1:26093260-26093279 None:intergenic 50.0%
AGGTGTAACCTCCCCATAAG+TGG + chr1_1:26093261-26093280 None:intergenic 50.0%
GCCATAGCAGCAAAATTGCC+TGG - chr1_1:26096199-26096218 Msa0015910:intron 50.0%
CGTGCCCTACCAAAACATGC+AGG - chr1_1:26092506-26092525 Msa0015910:three_prime_UTR 55.0%
TGCATGAGTCACTGGGGAAC+AGG - chr1_1:26092781-26092800 Msa0015910:CDS 55.0%
GAGTTGACCCACTTATGGGG+AGG - chr1_1:26093250-26093269 Msa0015910:intron 55.0%
!! ATCTCGGCTCGGCATTGGAA+GGG + chr1_1:26093730-26093749 None:intergenic 55.0%
!! TATCTCGGCTCGGCATTGGA+AGG + chr1_1:26093731-26093750 None:intergenic 55.0%
!! TGTCTCGGCTTGGCATAGGA+GGG + chr1_1:26093875-26093894 None:intergenic 55.0%
!! TTGTCTCGGCTTGGCATAGG+AGG + chr1_1:26093876-26093895 None:intergenic 55.0%
GAGTTGACCCACTTATGGGG+AGG - chr1_1:26093250-26093269 Msa0015910:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 26092307 26097093 26092307 ID=Msa0015910;Name=Msa0015910
chr1_1 mRNA 26092307 26097093 26092307 ID=Msa0015910-mRNA-1;Parent=Msa0015910;Name=Msa0015910-mRNA-1;_AED=0.22;_eAED=0.22;_QI=88|1|1|1|0.66|0.5|4|310|274
chr1_1 exon 26092307 26092412 26092307 ID=Msa0015910-mRNA-1:exon:8910;Parent=Msa0015910-mRNA-1
chr1_1 exon 26092443 26093208 26092443 ID=Msa0015910-mRNA-1:exon:8909;Parent=Msa0015910-mRNA-1
chr1_1 exon 26096598 26096727 26096598 ID=Msa0015910-mRNA-1:exon:8908;Parent=Msa0015910-mRNA-1
chr1_1 exon 26096873 26097093 26096873 ID=Msa0015910-mRNA-1:exon:8907;Parent=Msa0015910-mRNA-1
chr1_1 five_prime_UTR 26097006 26097093 26097006 ID=Msa0015910-mRNA-1:five_prime_utr;Parent=Msa0015910-mRNA-1
chr1_1 CDS 26096873 26097005 26096873 ID=Msa0015910-mRNA-1:cds;Parent=Msa0015910-mRNA-1
chr1_1 CDS 26096598 26096727 26096598 ID=Msa0015910-mRNA-1:cds;Parent=Msa0015910-mRNA-1
chr1_1 CDS 26092647 26093208 26092647 ID=Msa0015910-mRNA-1:cds;Parent=Msa0015910-mRNA-1
chr1_1 three_prime_UTR 26092443 26092646 26092443 ID=Msa0015910-mRNA-1:three_prime_utr;Parent=Msa0015910-mRNA-1
chr1_1 three_prime_UTR 26092307 26092412 26092307 ID=Msa0015910-mRNA-1:three_prime_utr;Parent=Msa0015910-mRNA-1
Gene Sequence

>Msa0015910

ATGGTTAGGGCTCCTTGTTGTGAAAAGAAGGGATTGAAAAAGGGTCCTTGGACCTTAGAGGAAGATGAAATCCTCACATCATACATCAATAAACATGGACATAGCAATTGGCGTGCCCTACCAAAACATGCAGGTTTATTAAGATGTGGAAAGAGTTGTCGATTGAGATGGATTAACTATTTAAAACCTGATATTAAGAGAGGAAATTTTTCAAATGAAGAAGAGGAAACTATCATCAAGATGCATGAGTCACTGGGGAACAGGTGGTCAGCCATAGCAGCAAAATTGCCTGGAAGAACAGACAATGAAATAAAAAATGTATGGCACACTCACTTGAAGAAAAGACTATTGAATACCAATAATAACCAACCCAATTCAAACACCAAAAAAAGAGTATCAAAACAAAAAATCAAAAGATCTCATTCCAATTCCAGCACTATAACTGAATCATATGAACCTTCTAATACTCCTAATAATCATTTCCTTGAAATGGAAACTACATCATCAAATTGCACATTTTCTAGTGATTTTTCATCACAAGGAAAAAATTTGGACAATAGCATCATTTGTGACCCTGAAGATTCATTTGTGACAATGCTTGAAATTGATGAAAGCTTTTGGTCAGAGACAGTAATTGATGATGAAATTAGTTCCACCGTGCCTTCAAATTCTATGACAGTTTCAAATGATTTACCAGATCAACAATACAATTTTAATAATTCAGTGGAAAATTTCCAAAACCCTTTTGATGATGATGATGGCATGGATTTTTGGGTTGACGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTTTAG
Protein sequence

>Msa0015910

MVRAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFSNEEEETIIKMHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQPNSNTKKRVSKQKIKRSHSNSSTITESYEPSNTPNNHFLEMETTSSNCTFSSDFSSQGKNLDNSIICDPEDSFVTMLEIDESFWSETVIDDEISSTVPSNSMTVSNDLPDQQYNFNNSVENFQNPFDDDDGMDFWVDVFIKSGESTELPEF*