Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320160 | SNQ45214.1 | 98.013 | 151 | 3 | 0 | 59 | 209 | 8 | 158 | 4.20e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320160 | sp|P14710|DRR3_PEA | 87.013 | 154 | 20 | 0 | 56 | 209 | 5 | 158 | 6.47e-93 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015910 | Msa0320160 | 0.810741 | 9.915810e-51 | -8.615850e-47 |
| Msa0046680 | Msa0320160 | 0.825304 | 5.042743e-54 | -8.615850e-47 |
| Msa0129290 | Msa0320160 | 0.877389 | 6.535015e-69 | -8.615850e-47 |
| Msa0138870 | Msa0320160 | 0.819338 | 1.224083e-52 | -8.615850e-47 |
| Msa0200080 | Msa0320160 | 0.833415 | 5.404660e-56 | -8.615850e-47 |
| Msa0200090 | Msa0320160 | 0.918890 | 8.912014e-87 | -8.615850e-47 |
| Msa0242710 | Msa0320160 | 0.950573 | 1.245449e-108 | -8.615850e-47 |
| Msa0242720 | Msa0320160 | 0.855374 | 6.586333e-62 | -8.615850e-47 |
| Msa0280930 | Msa0320160 | 0.808867 | 2.508205e-50 | -8.615850e-47 |
| Msa0280940 | Msa0320160 | 0.805249 | 1.462275e-49 | -8.615850e-47 |
| Msa0280990 | Msa0320160 | 0.891573 | 3.510582e-74 | -8.615850e-47 |
| Msa0320130 | Msa0320160 | 0.817457 | 3.264672e-52 | -8.615850e-47 |
| Msa0320140 | Msa0320160 | 0.819959 | 8.829437e-53 | -8.615850e-47 |
| Msa0320160 | Msa0421080 | 0.831429 | 1.678265e-55 | -8.615850e-47 |
| Msa0320160 | Msa0466850 | 0.824207 | 9.147858e-54 | -8.615850e-47 |
| Msa0320160 | Msa0513670 | 0.826642 | 2.425703e-54 | -8.615850e-47 |
| Msa0320160 | Msa0537210 | 0.800207 | 1.606039e-48 | -8.615850e-47 |
| Msa0320160 | Msa0546880 | 0.812044 | 5.168102e-51 | -8.615850e-47 |
| Msa0320160 | Msa0561110 | 0.827460 | 1.545734e-54 | -8.615850e-47 |
| Msa0320160 | Msa0588730 | 0.828140 | 1.060553e-54 | -8.615850e-47 |
| Msa0320160 | Msa0588880 | 0.802323 | 5.924649e-49 | -8.615850e-47 |
| Msa0320160 | Msa0629030 | 0.870933 | 1.002864e-66 | -8.615850e-47 |
| Msa0320160 | Msa0629040 | 0.825608 | 4.271810e-54 | -8.615850e-47 |
| Msa0320160 | Msa0652590 | 0.817620 | 3.000417e-52 | -8.615850e-47 |
| Msa0320160 | Msa0652600 | 0.822045 | 2.922354e-53 | -8.615850e-47 |
| Msa0320160 | Msa0652610 | 0.830333 | 3.114874e-55 | -8.615850e-47 |
| Msa0320160 | Msa0666580 | 0.870475 | 1.419421e-66 | -8.615850e-47 |
| Msa0320160 | Msa0672090 | 0.809636 | 1.715928e-50 | -8.615850e-47 |
| Msa0320160 | Msa0716620 | 0.876355 | 1.491580e-68 | -8.615850e-47 |
| Msa0320160 | Msa0728230 | 0.820103 | 8.185591e-53 | -8.615850e-47 |
| Msa0320160 | Msa0728570 | 0.812382 | 4.361706e-51 | -8.615850e-47 |
| Msa0320160 | Msa0744560 | 0.802966 | 4.364516e-49 | -8.615850e-47 |
| Msa0320160 | Msa0750830 | 0.815062 | 1.120575e-51 | -8.615850e-47 |
| Msa0320160 | Msa0772350 | 0.886809 | 2.475136e-72 | -8.615850e-47 |
| Msa0320160 | Msa0782890 | 0.804039 | 2.615818e-49 | -8.615850e-47 |
| Msa0320160 | Msa0794200 | 0.815351 | 9.664808e-52 | -8.615850e-47 |
| Msa0320160 | Msa0826240 | 0.802087 | 6.625014e-49 | -8.615850e-47 |
| Msa0320160 | Msa0826360 | 0.833139 | 6.330524e-56 | -8.615850e-47 |
| Msa0320160 | Msa0826370 | 0.816683 | 4.873047e-52 | -8.615850e-47 |
| Msa0320160 | Msa0837550 | 0.838127 | 3.459396e-57 | -8.615850e-47 |
| Msa0320160 | Msa0865810 | 0.816704 | 4.820551e-52 | -8.615850e-47 |
| Msa0320160 | Msa0865830 | 0.823883 | 1.089582e-53 | -8.615850e-47 |
| Msa0320160 | Msa0910560 | 0.805073 | 1.591402e-49 | -8.615850e-47 |
| Msa0320160 | Msa0945320 | 0.834682 | 2.603100e-56 | -8.615850e-47 |
| Msa0320160 | Msa0945330 | 0.805278 | 1.442321e-49 | -8.615850e-47 |
| Msa0320160 | Msa0976400 | 0.807455 | 5.013932e-50 | -8.615850e-47 |
| Msa0320160 | Msa0985380 | 0.832727 | 8.013698e-56 | -8.615850e-47 |
| Msa0320160 | Msa1023430 | 0.842839 | 2.023739e-58 | -8.615850e-47 |
| Msa0320160 | Msa1027340 | 0.844556 | 7.028261e-59 | -8.615850e-47 |
| Msa0320160 | Msa1027400 | 0.838573 | 2.653614e-57 | -8.615850e-47 |
| Msa0320160 | Msa1061840 | 0.817266 | 3.604272e-52 | -8.615850e-47 |
| Msa0320160 | Msa1071350 | 0.833020 | 6.778071e-56 | -8.615850e-47 |
| Msa0320160 | Msa1107510 | 0.833102 | 6.467787e-56 | -8.615850e-47 |
| Msa0320160 | Msa1110900 | 0.836777 | 7.669431e-57 | -8.615850e-47 |
| Msa0320160 | Msa1151070 | 0.843588 | 1.277614e-58 | -8.615850e-47 |
| Msa0320160 | Msa1154570 | 0.848578 | 5.605627e-60 | -8.615850e-47 |
| Msa0320160 | Msa1157200 | 0.807246 | 5.551659e-50 | -8.615850e-47 |
| Msa0320160 | Msa1218190 | 0.826728 | 2.312885e-54 | -8.615850e-47 |
| Msa0320160 | Msa1375640 | 0.804737 | 1.871007e-49 | -8.615850e-47 |
| Msa0320160 | Msa1398120 | 0.820432 | 6.880961e-53 | -8.615850e-47 |
| Msa0320160 | Msa1459930 | 0.837051 | 6.530219e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320160 | MtrunA17_Chr2g0295064 | 96.689 | 151 | 5 | 0 | 59 | 209 | 75 | 225 | 2.21e-101 | 292 |
| Msa0320160 | MtrunA17_Chr2g0295051 | 88.667 | 150 | 17 | 0 | 59 | 208 | 8 | 157 | 4.35e-93 | 269 |
| Msa0320160 | MtrunA17_Chr2g0295041 | 87.417 | 151 | 19 | 0 | 59 | 209 | 8 | 158 | 7.86e-92 | 266 |
| Msa0320160 | MtrunA17_Chr2g0295021 | 84.667 | 150 | 23 | 0 | 59 | 208 | 8 | 157 | 4.80e-88 | 256 |
| Msa0320160 | MtrunA17_Chr2g0295001 | 84.667 | 150 | 23 | 0 | 59 | 208 | 8 | 157 | 4.80e-88 | 256 |
| Msa0320160 | MtrunA17_Chr4g0067951 | 76.000 | 150 | 36 | 0 | 60 | 209 | 9 | 158 | 1.23e-78 | 232 |
| Msa0320160 | MtrunA17_Chr6g0462311 | 74.667 | 150 | 38 | 0 | 60 | 209 | 9 | 158 | 4.23e-77 | 228 |
| Msa0320160 | MtrunA17_Chr2g0295141 | 66.000 | 150 | 51 | 0 | 59 | 208 | 8 | 157 | 8.87e-65 | 197 |
| Msa0320160 | MtrunA17_Chr6g0462291 | 72.932 | 133 | 36 | 0 | 59 | 191 | 8 | 140 | 4.35e-64 | 196 |
| Msa0320160 | MtrunA17_Chr2g0295091 | 64.000 | 150 | 54 | 0 | 59 | 208 | 8 | 157 | 3.09e-62 | 191 |
| Msa0320160 | MtrunA17_Chr2g0295124 | 62.914 | 151 | 56 | 0 | 58 | 208 | 7 | 157 | 3.10e-61 | 188 |
| Msa0320160 | MtrunA17_Chr2g0295104 | 63.333 | 150 | 55 | 0 | 59 | 208 | 8 | 157 | 3.85e-61 | 188 |
| Msa0320160 | MtrunA17_Chr2g0295081 | 59.459 | 148 | 60 | 0 | 61 | 208 | 10 | 157 | 2.09e-59 | 183 |
| Msa0320160 | MtrunA17_Chr2g0295211 | 38.926 | 149 | 90 | 1 | 59 | 206 | 8 | 156 | 9.40e-35 | 120 |
| Msa0320160 | MtrunA17_Chr4g0067921 | 44.805 | 154 | 78 | 5 | 60 | 209 | 9 | 159 | 1.40e-32 | 115 |
| Msa0320160 | MtrunA17_Chr4g0067841 | 39.189 | 148 | 89 | 1 | 60 | 206 | 9 | 156 | 2.99e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATCCAGTGTGCTTAATT+TGG | 0.180482 | 2_4:+20451262 | Msa0320160:three_prime_UTR |
| AACAATTTCAACACTCTTGA+TGG | 0.245294 | 2_4:-20450654 | None:intergenic |
| TTTCATTATAAATTGAATAT+TGG | 0.247568 | 2_4:-20448985 | None:intergenic |
| TGATGGCATCAATAACCTTT+GGG | 0.301288 | 2_4:-20450637 | None:intergenic |
| TTGATGGCATCAATAACCTT+TGG | 0.345179 | 2_4:-20450638 | None:intergenic |
| GGCTATAGAGGGTTACTGTT+TGG | 0.394448 | 2_4:+20451162 | Msa0320160:CDS |
| CTTAGTAGATGATGCTAACT+TGG | 0.397103 | 2_4:+20450943 | Msa0320160:CDS |
| GCTTACAACTACAGCATTGT+TGG | 0.405129 | 2_4:+20450965 | Msa0320160:CDS |
| CCCTTGCAAGAGCAAACTTA+TGG | 0.407748 | 2_4:+20448908 | Msa0320160:CDS |
| TGGTAATGTCTTTGTGTTGC+GGG | 0.412771 | 2_4:+20449009 | Msa0320160:CDS |
| TTTGCAATGGATCCTCCATT+TGG | 0.420662 | 2_4:-20451049 | None:intergenic |
| TATATGCTTTAGTTGTAGTC+AGG | 0.421813 | 2_4:-20451190 | None:intergenic |
| TACAGCATTGTTGGAGGTGT+TGG | 0.427537 | 2_4:+20450974 | Msa0320160:CDS |
| GAGATCTTCTCTATTGTGTC+TGG | 0.431898 | 2_4:-20451001 | None:intergenic |
| CATCAATAACCTTTGGGGTA+AGG | 0.433870 | 2_4:-20450631 | None:intergenic |
| AAGAGTGTTGAAATTGTTGA+AGG | 0.434561 | 2_4:+20450659 | Msa0320160:CDS |
| ATATCCAGTGTGCTTAATTT+GGG | 0.434922 | 2_4:+20451263 | Msa0320160:three_prime_UTR |
| TAAGAAGTTTCAAGAGGAGC+TGG | 0.460745 | 2_4:+20448952 | Msa0320160:CDS |
| CACTTTGTGCAAGACATGCT+TGG | 0.461268 | 2_4:-20450918 | None:intergenic |
| AGAGCTTTGTAAAGTGTAGC+AGG | 0.462210 | 2_4:-20450590 | None:intergenic |
| TATTCAATTTATAATGAAAG+TGG | 0.472863 | 2_4:+20448989 | Msa0320160:CDS |
| AAATTGTCTGCAGGTCCAAA+TGG | 0.485800 | 2_4:+20451034 | Msa0320160:CDS |
| ACTTTACAAAGCTCTAGTTA+AGG | 0.493500 | 2_4:+20450598 | Msa0320160:CDS |
| AATAGAGAAGATCTCATTTG+AGG | 0.494265 | 2_4:+20451009 | Msa0320160:CDS |
| AGCAGGGGCTACAGTGGAGG+TGG | 0.494653 | 2_4:-20450573 | None:intergenic |
| CTCTTGAGTTCCTCTTCACT+AGG | 0.501934 | 2_4:-20451109 | None:intergenic |
| AATGTGAAATACTTCACAAA+AGG | 0.503374 | 2_4:+20451076 | Msa0320160:CDS |
| ACCATAAGTTTGCTCTTGCA+AGG | 0.509624 | 2_4:-20448909 | None:intergenic |
| TTTCACATTAAGCTTTGCAA+TGG | 0.512266 | 2_4:-20451062 | None:intergenic |
| ACTCACACTTAAGCAACAAA+AGG | 0.514579 | 2_4:-20451321 | None:intergenic |
| ACTTAAGCAACAAAAGGAAA+GGG | 0.517656 | 2_4:-20451315 | None:intergenic |
| AAACTTGTATAAGGAATATG+TGG | 0.518683 | 2_4:-20451400 | None:intergenic |
| GTTGAAGGAAACGGTGGTGC+CGG | 0.528042 | 2_4:+20450674 | Msa0320160:CDS |
| ACTCAAGAGTGGCAAAGCTA+AGG | 0.529920 | 2_4:+20451123 | Msa0320160:CDS |
| CTCAAGAGTGGCAAAGCTAA+GGG | 0.532020 | 2_4:+20451124 | Msa0320160:CDS |
| TTTGAGGCTAAATTGTCTGC+AGG | 0.535432 | 2_4:+20451025 | Msa0320160:CDS |
| AGTTTCAAGAGGAGCTGGAA+TGG | 0.539520 | 2_4:+20448957 | Msa0320160:CDS |
| GTTGAAATTGTTGAAGGAAA+CGG | 0.548798 | 2_4:+20450665 | Msa0320160:CDS |
| CTTAAGCAACAAAAGGAAAG+GGG | 0.552624 | 2_4:-20451314 | None:intergenic |
| CACTTAAGCAACAAAAGGAA+AGG | 0.564496 | 2_4:-20451316 | None:intergenic |
| TACAACTACAGCATTGTTGG+AGG | 0.566488 | 2_4:+20450968 | Msa0320160:CDS |
| GATGGCATCAATAACCTTTG+GGG | 0.578696 | 2_4:-20450636 | None:intergenic |
| CAAGCATGTCTTGCACAAAG+TGG | 0.581918 | 2_4:+20450919 | Msa0320160:CDS |
| AAGTGTAGCAGGGGCTACAG+TGG | 0.591266 | 2_4:-20450579 | None:intergenic |
| CCATAAGTTTGCTCTTGCAA+GGG | 0.592138 | 2_4:-20448908 | None:intergenic |
| AGTGGCAAAGCTAAGGGTGA+TGG | 0.593000 | 2_4:+20451130 | Msa0320160:CDS |
| TTCTGACAACCTTACCCCAA+AGG | 0.596498 | 2_4:+20450622 | Msa0320160:CDS |
| GAGCTTTGTAAAGTGTAGCA+GGG | 0.601987 | 2_4:-20450589 | None:intergenic |
| AGATGTTACTCCTAGTGAAG+AGG | 0.628737 | 2_4:+20451099 | Msa0320160:CDS |
| TGTAGCAGGGGCTACAGTGG+AGG | 0.638855 | 2_4:-20450576 | None:intergenic |
| GTGGTAATGTCTTTGTGTTG+CGG | 0.641536 | 2_4:+20449008 | Msa0320160:CDS |
| TTGTCTGCAGGTCCAAATGG+AGG | 0.646240 | 2_4:+20451037 | Msa0320160:CDS |
| GGCACCCAAATTAAGCACAC+TGG | 0.647847 | 2_4:-20451267 | None:intergenic |
| AGCTTTGTAAAGTGTAGCAG+GGG | 0.650529 | 2_4:-20450588 | None:intergenic |
| TGCTAATAGTAGAGAGCACG+TGG | 0.668503 | 2_4:+20449042 | Msa0320160:CDS |
| AGTGAAGAGGAACTCAAGAG+TGG | 0.684104 | 2_4:+20451112 | Msa0320160:CDS |
| TTAAGCAACAAAAGGAAAGG+GGG | 0.684119 | 2_4:-20451313 | None:intergenic |
| GAAATTGTTGAAGGAAACGG+TGG | 0.749751 | 2_4:+20450668 | Msa0320160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATTATAAATTGAATAT+TGG | - | chr2_4:20448988-20449007 | None:intergenic | 10.0% |
| !!! | AACATTTGTTAATAAAAAAT+AGG | + | chr2_4:20449414-20449433 | Msa0320160:intron | 10.0% |
| !!! | ACATTTGTTAATAAAAAATA+GGG | + | chr2_4:20449415-20449434 | Msa0320160:intron | 10.0% |
| !!! | AGTTTATATTTTTAGTTTTA+AGG | - | chr2_4:20449558-20449577 | None:intergenic | 10.0% |
| !! | CAAAAAAGAAAAAAAATATT+TGG | - | chr2_4:20450231-20450250 | None:intergenic | 10.0% |
| !! | TATTCAATTTATAATGAAAG+TGG | + | chr2_4:20448989-20449008 | Msa0320160:CDS | 15.0% |
| !! | TTTATTAACAAATGTTCTAA+GGG | - | chr2_4:20449410-20449429 | None:intergenic | 15.0% |
| !!! | TTTTATTAACAAATGTTCTA+AGG | - | chr2_4:20449411-20449430 | None:intergenic | 15.0% |
| !!! | ATTTTTATACTTAAGCTTAT+GGG | - | chr2_4:20449516-20449535 | None:intergenic | 15.0% |
| !!! | ATATTTTTAGTTTTAAGGTA+GGG | - | chr2_4:20449553-20449572 | None:intergenic | 15.0% |
| !!! | TATATTTTTAGTTTTAAGGT+AGG | - | chr2_4:20449554-20449573 | None:intergenic | 15.0% |
| !! | AAAATGATTTAGTTACAAAT+GGG | - | chr2_4:20449778-20449797 | None:intergenic | 15.0% |
| !! | TAAAATGATTTAGTTACAAA+TGG | - | chr2_4:20449779-20449798 | None:intergenic | 15.0% |
| !! | AATAATACTAATACTTTAGT+TGG | - | chr2_4:20449878-20449897 | None:intergenic | 15.0% |
| !!! | TGTATTATTTAGACTTTTTT+TGG | - | chr2_4:20450409-20450428 | None:intergenic | 15.0% |
| !!! | ATTTTAATACATTACTATCA+TGG | + | chr2_4:20450526-20450545 | Msa0320160:intron | 15.0% |
| !!! | TTTTAATACATTACTATCAT+GGG | + | chr2_4:20450527-20450546 | Msa0320160:intron | 15.0% |
| !! | ACCAAATCATCAATATAAAT+CGG | + | chr2_4:20449298-20449317 | Msa0320160:intron | 20.0% |
| !!! | GATTTTTATACTTAAGCTTA+TGG | - | chr2_4:20449517-20449536 | None:intergenic | 20.0% |
| !! | AAGCTTAAGTATAAAAATCA+TGG | + | chr2_4:20449518-20449537 | Msa0320160:intron | 20.0% |
| !! | TAAGTATAAAAATCATGGTT+TGG | + | chr2_4:20449523-20449542 | Msa0320160:intron | 20.0% |
| !! | ATAATAATGTAACTTGAAGT+TGG | + | chr2_4:20449626-20449645 | Msa0320160:intron | 20.0% |
| !!! | TTTATTCGAAACATTTTTGT+CGG | + | chr2_4:20449795-20449814 | Msa0320160:intron | 20.0% |
| !!! | GTCTGTTTAGTTTTATTTAA+GGG | - | chr2_4:20449844-20449863 | None:intergenic | 20.0% |
| !!! | TGTCTGTTTAGTTTTATTTA+AGG | - | chr2_4:20449845-20449864 | None:intergenic | 20.0% |
| !!! | TAAGAGTTTTAAAATTTGAC+TGG | + | chr2_4:20450154-20450173 | Msa0320160:intron | 20.0% |
| !! | TAGTTATGTCTAGTATTTAT+AGG | - | chr2_4:20450441-20450460 | None:intergenic | 20.0% |
| !! | TAGTAATGTATTAAAATGCT+AGG | - | chr2_4:20450523-20450542 | None:intergenic | 20.0% |
| !!! | TGTTTTTAAGAAGTTTCAAG+AGG | + | chr2_4:20448946-20448965 | Msa0320160:CDS | 25.0% |
| !! | TCTCAGTATTTTTCTTCATA+TGG | + | chr2_4:20449127-20449146 | Msa0320160:intron | 25.0% |
| !! | TATTAGTCAAGATTCTAGAA+TGG | + | chr2_4:20449944-20449963 | Msa0320160:intron | 25.0% |
| !! | ACATAATTTCCTCTTCTTTT+TGG | + | chr2_4:20450025-20450044 | Msa0320160:intron | 25.0% |
| !! | CATAATTTCCTCTTCTTTTT+GGG | + | chr2_4:20450026-20450045 | Msa0320160:intron | 25.0% |
| ! | TCAAAATCTGAGTATTCTTT+GGG | - | chr2_4:20450094-20450113 | None:intergenic | 25.0% |
| ! | TTCAAAATCTGAGTATTCTT+TGG | - | chr2_4:20450095-20450114 | None:intergenic | 25.0% |
| !!! | TAAAATTTGACTGGTCTTAT+AGG | + | chr2_4:20450163-20450182 | Msa0320160:intron | 25.0% |
| ! | TAAAGATGATGACTAATATC+AGG | - | chr2_4:20450351-20450370 | None:intergenic | 25.0% |
| ! | AGTCATCATCTTTATCTAAT+TGG | + | chr2_4:20450357-20450376 | Msa0320160:intron | 25.0% |
| ! | AATGTGAAATACTTCACAAA+AGG | + | chr2_4:20451076-20451095 | Msa0320160:CDS | 25.0% |
| ! | AGGAAAAATGAGAATTACAT+TGG | - | chr2_4:20451291-20451310 | None:intergenic | 25.0% |
| AGTAGTTAGATGGAATTTCA+TGG | - | chr2_4:20449157-20449176 | None:intergenic | 30.0% | |
| ! | GCCGATTTATATTGATGATT+TGG | - | chr2_4:20449302-20449321 | None:intergenic | 30.0% |
| ACTACATTCATAAACCACAT+TGG | + | chr2_4:20450457-20450476 | Msa0320160:intron | 30.0% | |
| ! | ACTTTACAAAGCTCTAGTTA+AGG | + | chr2_4:20450598-20450617 | Msa0320160:CDS | 30.0% |
| AACAATTTCAACACTCTTGA+TGG | - | chr2_4:20450657-20450676 | None:intergenic | 30.0% | |
| !! | AAGAGTGTTGAAATTGTTGA+AGG | + | chr2_4:20450659-20450678 | Msa0320160:CDS | 30.0% |
| GTTGAAATTGTTGAAGGAAA+CGG | + | chr2_4:20450665-20450684 | Msa0320160:CDS | 30.0% | |
| !!! | TGTGAGTTTTTTGATAGTTC+CGG | - | chr2_4:20450696-20450715 | None:intergenic | 30.0% |
| AAAAAACTCACATTCGTTGA+AGG | + | chr2_4:20450704-20450723 | Msa0320160:CDS | 30.0% | |
| CTTCAAATATGAAGAGATGT+AGG | - | chr2_4:20450845-20450864 | None:intergenic | 30.0% | |
| TGATGTTTGTGATTGTGAAA+CGG | + | chr2_4:20450874-20450893 | Msa0320160:intron | 30.0% | |
| AATAGAGAAGATCTCATTTG+AGG | + | chr2_4:20451009-20451028 | Msa0320160:CDS | 30.0% | |
| TTTCACATTAAGCTTTGCAA+TGG | - | chr2_4:20451065-20451084 | None:intergenic | 30.0% | |
| TATATGCTTTAGTTGTAGTC+AGG | - | chr2_4:20451193-20451212 | None:intergenic | 30.0% | |
| ATATCCAGTGTGCTTAATTT+GGG | + | chr2_4:20451263-20451282 | Msa0320160:three_prime_UTR | 30.0% | |
| ACTTAAGCAACAAAAGGAAA+GGG | - | chr2_4:20451318-20451337 | None:intergenic | 30.0% | |
| !! | TGCAAGTACTTTGAGTTTTG+AGG | + | chr2_4:20449086-20449105 | Msa0320160:intron | 35.0% |
| !! | GCAAGTACTTTGAGTTTTGA+GGG | + | chr2_4:20449087-20449106 | Msa0320160:intron | 35.0% |
| TTAAGCTCATTTCCTATCGA+TGG | - | chr2_4:20449187-20449206 | None:intergenic | 35.0% | |
| ATGATGAACTCTCGATCTAA+AGG | - | chr2_4:20449487-20449506 | None:intergenic | 35.0% | |
| AATGCAAACCCAAAAAGAAG+AGG | - | chr2_4:20450037-20450056 | None:intergenic | 35.0% | |
| ! | ATATATTGCCGTAGCTTTTG+TGG | + | chr2_4:20450114-20450133 | Msa0320160:intron | 35.0% |
| TCAAAGAACCACAAAAGCTA+CGG | - | chr2_4:20450125-20450144 | None:intergenic | 35.0% | |
| ! | GATGACTAATATCAGGTTGT+TGG | - | chr2_4:20450344-20450363 | None:intergenic | 35.0% |
| ! | AAGTTGATTACTTGCCAATG+TGG | - | chr2_4:20450474-20450493 | None:intergenic | 35.0% |
| TGATGGCATCAATAACCTTT+GGG | - | chr2_4:20450640-20450659 | None:intergenic | 35.0% | |
| ! | TTGATGGCATCAATAACCTT+TGG | - | chr2_4:20450641-20450660 | None:intergenic | 35.0% |
| CTTAGTAGATGATGCTAACT+TGG | + | chr2_4:20450943-20450962 | Msa0320160:CDS | 35.0% | |
| GATATCCAGTGTGCTTAATT+TGG | + | chr2_4:20451262-20451281 | Msa0320160:three_prime_UTR | 35.0% | |
| TTAAGCAACAAAAGGAAAGG+GGG | - | chr2_4:20451316-20451335 | None:intergenic | 35.0% | |
| CTTAAGCAACAAAAGGAAAG+GGG | - | chr2_4:20451317-20451336 | None:intergenic | 35.0% | |
| CACTTAAGCAACAAAAGGAA+AGG | - | chr2_4:20451319-20451338 | None:intergenic | 35.0% | |
| ACTCACACTTAAGCAACAAA+AGG | - | chr2_4:20451324-20451343 | None:intergenic | 35.0% | |
| ! | CCATAAGTTTGCTCTTGCAA+GGG | - | chr2_4:20448911-20448930 | None:intergenic | 40.0% |
| ! | ACCATAAGTTTGCTCTTGCA+AGG | - | chr2_4:20448912-20448931 | None:intergenic | 40.0% |
| TAAGAAGTTTCAAGAGGAGC+TGG | + | chr2_4:20448952-20448971 | Msa0320160:CDS | 40.0% | |
| ! | GTGGTAATGTCTTTGTGTTG+CGG | + | chr2_4:20449008-20449027 | Msa0320160:CDS | 40.0% |
| ! | TGGTAATGTCTTTGTGTTGC+GGG | + | chr2_4:20449009-20449028 | Msa0320160:CDS | 40.0% |
| TGGAATGGCAAGTAGTTAGA+TGG | - | chr2_4:20449167-20449186 | None:intergenic | 40.0% | |
| CTCATTTCCTATCGATGGAA+TGG | - | chr2_4:20449182-20449201 | None:intergenic | 40.0% | |
| ! | TTGTATGCACGTGGGTTATA+TGG | - | chr2_4:20449278-20449297 | None:intergenic | 40.0% |
| !! | GATTTGGTTTGTATGCACGT+GGG | - | chr2_4:20449286-20449305 | None:intergenic | 40.0% |
| !! | TGATTTGGTTTGTATGCACG+TGG | - | chr2_4:20449287-20449306 | None:intergenic | 40.0% |
| ATGAACTCTCGATCTAAAGG+AGG | - | chr2_4:20449484-20449503 | None:intergenic | 40.0% | |
| ! | CATGGGTGTGTTCAATTTTG+AGG | + | chr2_4:20450544-20450563 | Msa0320160:intron | 40.0% |
| ! | AGCTTTGTAAAGTGTAGCAG+GGG | - | chr2_4:20450591-20450610 | None:intergenic | 40.0% |
| ! | GAGCTTTGTAAAGTGTAGCA+GGG | - | chr2_4:20450592-20450611 | None:intergenic | 40.0% |
| ! | AGAGCTTTGTAAAGTGTAGC+AGG | - | chr2_4:20450593-20450612 | None:intergenic | 40.0% |
| !! | CATCAATAACCTTTGGGGTA+AGG | - | chr2_4:20450634-20450653 | None:intergenic | 40.0% |
| GATGGCATCAATAACCTTTG+GGG | - | chr2_4:20450639-20450658 | None:intergenic | 40.0% | |
| GAAATTGTTGAAGGAAACGG+TGG | + | chr2_4:20450668-20450687 | Msa0320160:CDS | 40.0% | |
| AACTCACATTCGTTGAAGGT+CGG | + | chr2_4:20450708-20450727 | Msa0320160:intron | 40.0% | |
| GCTTACAACTACAGCATTGT+TGG | + | chr2_4:20450965-20450984 | Msa0320160:CDS | 40.0% | |
| TACAACTACAGCATTGTTGG+AGG | + | chr2_4:20450968-20450987 | Msa0320160:CDS | 40.0% | |
| GAGATCTTCTCTATTGTGTC+TGG | - | chr2_4:20451004-20451023 | None:intergenic | 40.0% | |
| ! | TTTGAGGCTAAATTGTCTGC+AGG | + | chr2_4:20451025-20451044 | Msa0320160:CDS | 40.0% |
| AAATTGTCTGCAGGTCCAAA+TGG | + | chr2_4:20451034-20451053 | Msa0320160:CDS | 40.0% | |
| TTTGCAATGGATCCTCCATT+TGG | - | chr2_4:20451052-20451071 | None:intergenic | 40.0% | |
| AGATGTTACTCCTAGTGAAG+AGG | + | chr2_4:20451099-20451118 | Msa0320160:CDS | 40.0% | |
| !! | TAAGGGTGATGGTCTTTTCA+AGG | + | chr2_4:20451141-20451160 | Msa0320160:CDS | 40.0% |
| !! | TGGTCTTTTCAAGGCTATAG+AGG | + | chr2_4:20451150-20451169 | Msa0320160:CDS | 40.0% |
| !! | GGTCTTTTCAAGGCTATAGA+GGG | + | chr2_4:20451151-20451170 | Msa0320160:CDS | 40.0% |
| CCCTTGCAAGAGCAAACTTA+TGG | + | chr2_4:20448908-20448927 | Msa0320160:CDS | 45.0% | |
| AGTTTCAAGAGGAGCTGGAA+TGG | + | chr2_4:20448957-20448976 | Msa0320160:CDS | 45.0% | |
| ! | TGCTAATAGTAGAGAGCACG+TGG | + | chr2_4:20449042-20449061 | Msa0320160:CDS | 45.0% |
| CTACTTGCCATTCCATCGAT+AGG | + | chr2_4:20449172-20449191 | Msa0320160:intron | 45.0% | |
| TTCTGACAACCTTACCCCAA+AGG | + | chr2_4:20450622-20450641 | Msa0320160:CDS | 45.0% | |
| GAAACGGATCAATGTGCAGA+TGG | + | chr2_4:20450890-20450909 | Msa0320160:intron | 45.0% | |
| CACTTTGTGCAAGACATGCT+TGG | - | chr2_4:20450921-20450940 | None:intergenic | 45.0% | |
| CAAGCATGTCTTGCACAAAG+TGG | + | chr2_4:20450919-20450938 | Msa0320160:CDS | 45.0% | |
| ! | TACAGCATTGTTGGAGGTGT+TGG | + | chr2_4:20450974-20450993 | Msa0320160:CDS | 45.0% |
| CTCTTGAGTTCCTCTTCACT+AGG | - | chr2_4:20451112-20451131 | None:intergenic | 45.0% | |
| AGTGAAGAGGAACTCAAGAG+TGG | + | chr2_4:20451112-20451131 | Msa0320160:CDS | 45.0% | |
| ACTCAAGAGTGGCAAAGCTA+AGG | + | chr2_4:20451123-20451142 | Msa0320160:CDS | 45.0% | |
| CTCAAGAGTGGCAAAGCTAA+GGG | + | chr2_4:20451124-20451143 | Msa0320160:CDS | 45.0% | |
| GGCTATAGAGGGTTACTGTT+TGG | + | chr2_4:20451162-20451181 | Msa0320160:CDS | 45.0% | |
| CAACAAAAGGAAAGGGGGAA+AGG | - | chr2_4:20451311-20451330 | None:intergenic | 45.0% | |
| !!! | TTTTGTTAAAAATTTAAAAA+AGG | - | chr2_4:20449386-20449405 | None:intergenic | 5.0% |
| !! | AAAAAAGAAAAAAAATATTT+GGG | - | chr2_4:20450230-20450249 | None:intergenic | 5.0% |
| !!! | TTTTTCTTTAAAATTTAAAA+AGG | + | chr2_4:20450268-20450287 | Msa0320160:intron | 5.0% |
| TTGTCTGCAGGTCCAAATGG+AGG | + | chr2_4:20451037-20451056 | Msa0320160:CDS | 50.0% | |
| AGTGGCAAAGCTAAGGGTGA+TGG | + | chr2_4:20451130-20451149 | Msa0320160:CDS | 50.0% | |
| GGCACCCAAATTAAGCACAC+TGG | - | chr2_4:20451270-20451289 | None:intergenic | 50.0% | |
| AAGTGTAGCAGGGGCTACAG+TGG | - | chr2_4:20450582-20450601 | None:intergenic | 55.0% | |
| GTTGAAGGAAACGGTGGTGC+CGG | + | chr2_4:20450674-20450693 | Msa0320160:CDS | 55.0% | |
| TGTAGCAGGGGCTACAGTGG+AGG | - | chr2_4:20450579-20450598 | None:intergenic | 60.0% | |
| AGCAGGGGCTACAGTGGAGG+TGG | - | chr2_4:20450576-20450595 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 20448893 | 20451410 | 20448893 | ID=Msa0320160;Name=Msa0320160 |
| chr2_4 | mRNA | 20448893 | 20451410 | 20448893 | ID=Msa0320160-mRNA-1;Parent=Msa0320160;Name=Msa0320160-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0.5|0.33|1|0.5|0.33|3|206|209 |
| chr2_4 | exon | 20448893 | 20449066 | 20448893 | ID=Msa0320160-mRNA-1:exon:7534;Parent=Msa0320160-mRNA-1 |
| chr2_4 | exon | 20450566 | 20450725 | 20450566 | ID=Msa0320160-mRNA-1:exon:7535;Parent=Msa0320160-mRNA-1 |
| chr2_4 | exon | 20450909 | 20451410 | 20450909 | ID=Msa0320160-mRNA-1:exon:7536;Parent=Msa0320160-mRNA-1 |
| chr2_4 | CDS | 20448893 | 20449066 | 20448893 | ID=Msa0320160-mRNA-1:cds;Parent=Msa0320160-mRNA-1 |
| chr2_4 | CDS | 20450566 | 20450725 | 20450566 | ID=Msa0320160-mRNA-1:cds;Parent=Msa0320160-mRNA-1 |
| chr2_4 | CDS | 20450909 | 20451204 | 20450909 | ID=Msa0320160-mRNA-1:cds;Parent=Msa0320160-mRNA-1 |
| chr2_4 | three_prime_UTR | 20451205 | 20451410 | 20451205 | ID=Msa0320160-mRNA-1:three_prime_utr;Parent=Msa0320160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
