AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865810 MtrunA17_Chr5g0447941 97.436 312 8 0 1 312 1 312 0.0 632
Msa0865810 MtrunA17_Chr5g0447951 97.115 312 9 0 1 312 1 312 0.0 630
Msa0865810 MtrunA17_Chr5g0447961 97.115 312 9 0 1 312 1 312 0.0 630
Msa0865810 MtrunA17_Chr3g0121001 68.506 308 96 1 6 312 7 314 3.18e-162 454
Msa0865810 MtrunA17_Chr1g0173621 62.623 305 111 3 1 302 1 305 2.03e-136 389
Msa0865810 MtrunA17_Chr6g0479981 49.505 303 146 5 1 300 1 299 5.75e-95 283
Msa0865810 MtrunA17_Chr6g0480011 49.186 307 143 8 1 300 1 301 9.92e-94 281
Msa0865810 MtrunA17_Chr6g0480021 48.039 306 125 7 19 311 16 300 1.68e-91 274
Msa0865810 MtrunA17_Chr8g0368921 42.254 284 161 2 19 300 15 297 4.15e-74 230
Msa0865810 MtrunA17_Chr7g0239701 43.382 272 142 3 49 311 47 315 2.93e-71 223
Msa0865810 MtrunA17_Chr4g0018921 40.702 285 164 4 18 300 12 293 6.42e-71 222
Msa0865810 MtrunA17_Chr8g0368931 42.708 288 154 4 19 302 15 295 1.77e-69 218
Msa0865810 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 4.24e-66 209
Msa0865810 MtrunA17_Chr4g0009581 42.295 305 148 6 19 312 16 303 4.08e-65 207
Msa0865810 MtrunA17_Chr4g0036261 58.125 160 66 1 139 297 1 160 8.12e-59 187
Msa0865810 MtrunA17_Chr7g0243551 38.321 274 161 5 20 292 23 289 7.22e-58 188
Msa0865810 MtrunA17_Chr4g0036051 38.816 304 171 6 18 310 9 308 4.00e-57 186
Msa0865810 MtrunA17_Chr4g0036301 52.353 170 71 3 151 311 1 169 2.72e-50 164
Msa0865810 MtrunA17_Chr4g0036321 51.765 170 72 3 151 311 1 169 6.82e-49 160
Msa0865810 MtrunA17_Chr4g0009621 42.922 219 113 2 82 300 1 207 9.95e-45 152
Msa0865810 MtrunA17_Chr6g0479811 45.133 113 57 2 191 300 1 111 5.90e-25 97.1
Msa0865810 MtrunA17_Chr4g0036291 51.111 90 42 2 20 107 17 106 6.66e-24 94.0
Msa0865810 MtrunA17_Chr4g0036311 48.352 91 45 2 19 107 16 106 5.66e-23 91.7
Msa0865810 MtrunA17_Chr4g0036251 51.111 90 38 2 19 107 16 100 1.11e-22 90.5
Msa0865810 MtrunA17_Chr3g0095421 26.510 298 147 11 34 285 73 344 4.29e-17 80.9
Msa0865810 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 2.27e-16 73.6
Msa0865810 MtrunA17_Chr3g0127491 22.789 294 178 9 36 294 71 350 4.13e-14 72.0
Msa0865810 MtrunA17_Chr7g0274071 25.347 288 151 11 41 289 52 314 5.50e-13 68.6
Msa0865810 MtrunA17_Chr7g0222171 25.087 287 161 9 41 292 43 310 5.77e-12 65.5
Msa0865810 MtrunA17_Chr1g0204651 23.301 309 166 10 24 289 29 309 7.53e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865810 AT1G59960.1 54.221 308 130 6 1 300 1 305 1.88e-113 331
Msa0865810 AT1G59950.1 55.903 288 117 5 20 300 15 299 1.60e-104 308
Msa0865810 AT2G37790.1 43.706 286 150 4 19 300 15 293 7.43e-77 238
Msa0865810 AT2G37770.2 44.056 286 149 4 19 300 15 293 3.45e-76 236
Msa0865810 AT5G62420.1 43.310 284 155 4 20 300 14 294 3.92e-73 228
Msa0865810 AT2G37760.4 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0865810 AT2G37760.3 44.014 284 146 4 19 299 15 288 6.74e-73 227
Msa0865810 AT5G01670.1 42.254 284 155 6 19 300 23 299 2.89e-72 226
Msa0865810 AT2G37760.5 44.484 281 143 4 19 296 15 285 6.00e-72 224
Msa0865810 AT2G37760.2 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0865810 AT2G37760.1 43.972 282 145 4 19 297 15 286 3.57e-71 223
Msa0865810 AT3G53880.1 41.696 283 160 3 19 300 15 293 2.82e-69 218
Msa0865810 AT3G53880.2 41.516 277 157 3 19 294 15 287 6.46e-67 212
Msa0865810 AT5G01670.2 38.585 311 155 7 19 300 23 326 2.59e-66 212
Msa0865810 AT2G21260.1 38.754 289 162 6 18 295 9 293 4.32e-65 207
Msa0865810 AT2G21250.1 37.500 304 175 6 18 310 9 308 9.45e-64 204
Msa0865810 AT2G37760.6 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0865810 AT2G37760.7 43.933 239 127 3 62 297 6 240 1.12e-58 189
Msa0865810 AT2G37770.1 47.208 197 94 3 19 212 15 204 1.31e-53 177
Msa0865810 AT2G21250.2 41.546 207 110 5 18 217 9 211 8.26e-47 158
Msa0865810 AT2G21260.2 34.545 220 131 5 87 295 8 225 9.11e-40 140
Msa0865810 AT1G06690.1 27.458 295 146 10 35 285 85 355 2.35e-20 90.9
Msa0865810 AT5G53580.1 24.912 285 159 10 44 290 80 347 4.24e-15 75.5
Msa0865810 AT1G60680.1 26.101 318 171 14 25 300 27 322 1.05e-13 71.2
Msa0865810 AT1G60750.1 25.532 282 160 12 44 300 50 306 2.15e-11 64.3

Find 70 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACACAAATTT+TGG 0.147232 5_4:+66993392 None:intergenic
TTGCATTGCAAAACTCTCTA+AGG 0.274401 5_4:+66993608 None:intergenic
TAAAATACCAGAAAATAATT+TGG 0.275670 5_4:+66993118 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.287256 5_4:+66993919 None:intergenic
ATTATCAATGTTATTGTATT+GGG 0.287934 5_4:-66993172 Msa0865810:three_prime_UTR
TGGACTTGTACTTGATTCAT+TGG 0.300645 5_4:-66993957 Msa0865810:CDS
AATTATCAATGTTATTGTAT+TGG 0.323636 5_4:-66993173 Msa0865810:three_prime_UTR
GTGTCTATAACCTTGTTTGA+TGG 0.333209 5_4:+66994405 None:intergenic
CTTTGTCACTTCCAAACTTT+GGG 0.341927 5_4:-66994290 Msa0865810:CDS
AGGCCTGGCTTGGTTGGTCC+AGG 0.344379 5_4:+66993310 None:intergenic
AAAATTTGTGTATCTTTGAT+TGG 0.361005 5_4:-66993390 Msa0865810:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 5_4:+66994451 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.375654 5_4:-66993876 Msa0865810:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 5_4:-66993829 Msa0865810:CDS
CAAACACCTTTCACATCAAA+TGG 0.378027 5_4:+66993877 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.378807 5_4:+66993901 None:intergenic
TCTTTGTCACTTCCAAACTT+TGG 0.379540 5_4:-66994291 Msa0865810:CDS
TCATTCTCCATAACCTCATT+TGG 0.392662 5_4:+66993532 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.398611 5_4:-66993471 Msa0865810:CDS
TCTTTCCTTATCATAACTCT+TGG 0.404407 5_4:+66993420 None:intergenic
CAGAGGACCAAATGAGGTTA+TGG 0.408273 5_4:-66993539 Msa0865810:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.418218 5_4:-66993875 Msa0865810:CDS
TTGAAAGAGGCAATTGAACT+TGG 0.422526 5_4:-66994334 Msa0865810:CDS
TGTTCCCAAGAGTTATGATA+AGG 0.428240 5_4:-66993425 Msa0865810:CDS
TTTGATACTGCTGCTGCCTA+TGG 0.438326 5_4:-66994382 Msa0865810:CDS
TCATTGAGGCCTGGCTTGGT+TGG 0.438358 5_4:+66993304 None:intergenic
CTTTCCTTATCATAACTCTT+GGG 0.442857 5_4:+66993421 None:intergenic
AAGCAAAATCGTTTGATCCC+TGG 0.455139 5_4:-66993328 Msa0865810:CDS
GACTCTTCAACTAGACTACT+TGG 0.469433 5_4:-66993977 Msa0865810:CDS
GAGGTCATTGAGGCCTGGCT+TGG 0.476217 5_4:+66993300 None:intergenic
TGTTGGTAAGAACCTTTGTT+GGG 0.483158 5_4:+66994518 None:intergenic
ATCCCTGGACCAACCAAGCC+AGG 0.483424 5_4:-66993313 Msa0865810:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 5_4:+66993849 None:intergenic
GGCCTGGCTTGGTTGGTCCA+GGG 0.485174 5_4:+66993311 None:intergenic
TGAATTACTTGATTGACTGC+TGG 0.489360 5_4:+66993748 None:intergenic
TATGGTTCAGAACAAGCTCT+TGG 0.489964 5_4:-66994364 Msa0865810:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 5_4:-66993847 Msa0865810:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 5_4:-66994347 Msa0865810:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 5_4:+66994452 None:intergenic
GTGTTGGTAAGAACCTTTGT+TGG 0.513012 5_4:+66994517 None:intergenic
CTCTTACCATTTGATGTGAA+AGG 0.516557 5_4:-66993883 Msa0865810:CDS
AAGAGCTTGTTCTGAACCAT+AGG 0.526693 5_4:+66994366 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.533175 5_4:-66994482 Msa0865810:CDS
TCATAGAGGTCATTGAGGCC+TGG 0.545875 5_4:+66993295 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.552845 5_4:-66994481 Msa0865810:CDS
AAGGTTCTTACCAACACTCC+TGG 0.555463 5_4:-66994511 Msa0865810:CDS
CTGACATTTAGTCATCATAG+AGG 0.564328 5_4:+66993281 None:intergenic
CTTCAGTTGACCAGGAGTGT+TGG 0.569334 5_4:+66994501 None:intergenic
GCTGATCCCATTCCAACCAC+AGG 0.587516 5_4:+66994475 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 5_4:-66994415 Msa0865810:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 5_4:-66993866 Msa0865810:CDS
CTAAGATGGCTATATGAACA+AGG 0.588672 5_4:-66993457 Msa0865810:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.589452 5_4:+66993559 None:intergenic
AGGTGGAGATGAACCTTGCA+TGG 0.591438 5_4:-66993642 Msa0865810:CDS
TGCAAGCAGAGGACCAAATG+AGG 0.592065 5_4:-66993545 Msa0865810:CDS
ACAGGCATCTTCAGTTGACC+AGG 0.593409 5_4:+66994493 None:intergenic
CAACTGAAGATGCCTGTGGT+TGG 0.604555 5_4:-66994487 Msa0865810:CDS
AGTCATCATAGAGGTCATTG+AGG 0.605914 5_4:+66993290 None:intergenic
TGGTCAACTGAAGATGCCTG+TGG 0.614136 5_4:-66994491 Msa0865810:CDS
TTTCTTACATGTGAAGTCAG+GGG 0.620409 5_4:+66994453 None:intergenic
TGGCCACTTAGTTCTCAACC+TGG 0.621982 5_4:-66993937 Msa0865810:CDS
TTCAAAGCTCGAAAGAAACA+AGG 0.626557 5_4:+66993194 None:intergenic
TTTCCAGGTTGAGAACTAAG+TGG 0.629025 5_4:+66993934 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 5_4:-66993502 Msa0865810:CDS
AGAGCAGGAATAACAAGATG+AGG 0.638684 5_4:+66994253 None:intergenic
TTGAGGAAAGGTGCAAGCAG+AGG 0.639249 5_4:-66993556 Msa0865810:CDS
TTCAGAACAAGCTCTTGGAG+AGG 0.639658 5_4:-66994359 Msa0865810:CDS
TAGTGTTGAAATCCCAACAA+AGG 0.659490 5_4:-66994530 Msa0865810:CDS
AGGTGTTTGGGAATCCATGG+AGG 0.719619 5_4:-66993863 Msa0865810:CDS
ATTGACTGCTGGAAGAACAG+TGG 0.720759 5_4:+66993759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATCAATGTTATTGTAT+TGG - chr5_4:66994538-66994557 Msa0865810:CDS 15.0%
!! ATTATCAATGTTATTGTATT+GGG - chr5_4:66994539-66994558 Msa0865810:exon 15.0%
!! TAAAATACCAGAAAATAATT+TGG + chr5_4:66994596-66994615 None:intergenic 15.0%
!! AATTATCAATGTTATTGTAT+TGG - chr5_4:66994538-66994557 Msa0865810:CDS 15.0%
!! ATTATCAATGTTATTGTATT+GGG - chr5_4:66994539-66994558 Msa0865810:exon 15.0%
!! TAAAATACCAGAAAATAATT+TGG + chr5_4:66994596-66994615 None:intergenic 15.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG + chr5_4:66993149-66993168 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG - chr5_4:66993158-66993177 Msa0865810:three_prime_UTR 20.0%
!! CAAAAAGTTAATCAAAACTT+AGG + chr5_4:66993998-66994017 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr5_4:66994322-66994341 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr5_4:66994321-66994340 Msa0865810:CDS 20.0%
!!! ATTTTCTCCAAATTATTTTC+TGG - chr5_4:66994586-66994605 Msa0865810:five_prime_UTR 20.0%
!!! TTATTTTTGTTGTTGTTGTT+GGG + chr5_4:66993149-66993168 None:intergenic 20.0%
!! AACAAAAATAACAACAACAT+GGG - chr5_4:66993158-66993177 Msa0865810:three_prime_UTR 20.0%
!! CAAAAAGTTAATCAAAACTT+AGG + chr5_4:66993998-66994017 None:intergenic 20.0%
!!! AATCAAAGATACACAAATTT+TGG + chr5_4:66994322-66994341 None:intergenic 20.0%
!! AAAATTTGTGTATCTTTGAT+TGG - chr5_4:66994321-66994340 Msa0865810:CDS 20.0%
!!! ATTTTCTCCAAATTATTTTC+TGG - chr5_4:66994586-66994605 Msa0865810:five_prime_UTR 20.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG + chr5_4:66993150-66993169 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG - chr5_4:66993157-66993176 Msa0865810:three_prime_UTR 25.0%
! TACACTTATTGAGATTAAAC+TGG - chr5_4:66993692-66993711 Msa0865810:intron 25.0%
! CAATGAACTCATATATTTAC+AGG - chr5_4:66994049-66994068 Msa0865810:intron 25.0%
!!! GTTATTTTTGTTGTTGTTGT+TGG + chr5_4:66993150-66993169 None:intergenic 25.0%
! CAACAAAAATAACAACAACA+TGG - chr5_4:66993157-66993176 Msa0865810:three_prime_UTR 25.0%
! TACACTTATTGAGATTAAAC+TGG - chr5_4:66993692-66993711 Msa0865810:intron 25.0%
! CAATGAACTCATATATTTAC+AGG - chr5_4:66994049-66994068 Msa0865810:intron 25.0%
! ATTTTCAGTAACCCAAAGTT+TGG + chr5_4:66993435-66993454 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr5_4:66993795-66993814 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr5_4:66993800-66993819 Msa0865810:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - chr5_4:66993836-66993855 Msa0865810:CDS 30.0%
TGAACTCATATATTTACAGG+TGG - chr5_4:66994052-66994071 Msa0865810:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_4:66994240-66994259 Msa0865810:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG + chr5_4:66994293-66994312 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG + chr5_4:66994294-66994313 None:intergenic 30.0%
! ATTTTCAGTAACCCAAAGTT+TGG + chr5_4:66993435-66993454 None:intergenic 30.0%
ATTGGAAATGAAAACTTTCC+AGG + chr5_4:66993795-66993814 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG - chr5_4:66993800-66993819 Msa0865810:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG - chr5_4:66993836-66993855 Msa0865810:CDS 30.0%
TGAACTCATATATTTACAGG+TGG - chr5_4:66994052-66994071 Msa0865810:intron 30.0%
! TTGCACAAATTTCTCTAAGA+TGG - chr5_4:66994240-66994259 Msa0865810:CDS 30.0%
CTTTCCTTATCATAACTCTT+GGG + chr5_4:66994293-66994312 None:intergenic 30.0%
TCTTTCCTTATCATAACTCT+TGG + chr5_4:66994294-66994313 None:intergenic 30.0%
! TAGTGTTGAAATCCCAACAA+AGG - chr5_4:66993181-66993200 Msa0865810:three_prime_UTR 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG + chr5_4:66993196-66993215 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_4:66993261-66993280 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_4:66993262-66993281 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_4:66993263-66993282 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_4:66993296-66993315 Msa0865810:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_4:66993309-66993328 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_4:66993377-66993396 Msa0865810:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG - chr5_4:66993420-66993439 Msa0865810:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG - chr5_4:66993421-66993440 Msa0865810:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG + chr5_4:66993476-66993495 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_4:66993754-66993773 Msa0865810:intron 35.0%
CTCTTACCATTTGATGTGAA+AGG - chr5_4:66993828-66993847 Msa0865810:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG + chr5_4:66993837-66993856 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - chr5_4:66993835-66993854 Msa0865810:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG + chr5_4:66993966-66993985 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG + chr5_4:66994106-66994125 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG - chr5_4:66994107-66994126 Msa0865810:intron 35.0%
TCATTCTCCATAACCTCATT+TGG + chr5_4:66994182-66994201 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_4:66994254-66994273 Msa0865810:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG - chr5_4:66994286-66994305 Msa0865810:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG + chr5_4:66994433-66994452 None:intergenic 35.0%
TTCAAAGCTCGAAAGAAACA+AGG + chr5_4:66994520-66994539 None:intergenic 35.0%
! TAGTGTTGAAATCCCAACAA+AGG - chr5_4:66993181-66993200 Msa0865810:three_prime_UTR 35.0%
! TGTTGGTAAGAACCTTTGTT+GGG + chr5_4:66993196-66993215 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG + chr5_4:66993261-66993280 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG + chr5_4:66993262-66993281 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG + chr5_4:66993263-66993282 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG - chr5_4:66993296-66993315 Msa0865810:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG + chr5_4:66993309-66993328 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG - chr5_4:66993377-66993396 Msa0865810:CDS 35.0%
! TCTTTGTCACTTCCAAACTT+TGG - chr5_4:66993420-66993439 Msa0865810:CDS 35.0%
! CTTTGTCACTTCCAAACTTT+GGG - chr5_4:66993421-66993440 Msa0865810:CDS 35.0%
! TTGAGAGATTTTTGTAGAGC+AGG + chr5_4:66993476-66993495 None:intergenic 35.0%
TGGACTTGTACTTGATTCAT+TGG - chr5_4:66993754-66993773 Msa0865810:intron 35.0%
CTCTTACCATTTGATGTGAA+AGG - chr5_4:66993828-66993847 Msa0865810:CDS 35.0%
CAAACACCTTTCACATCAAA+TGG + chr5_4:66993837-66993856 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG - chr5_4:66993835-66993854 Msa0865810:CDS 35.0%
TGAATTACTTGATTGACTGC+TGG + chr5_4:66993966-66993985 None:intergenic 35.0%
TTGCATTGCAAAACTCTCTA+AGG + chr5_4:66994106-66994125 None:intergenic 35.0%
! AGAGAGTTTTGCAATGCAAA+TGG - chr5_4:66994107-66994126 Msa0865810:intron 35.0%
TCATTCTCCATAACCTCATT+TGG + chr5_4:66994182-66994201 None:intergenic 35.0%
CTAAGATGGCTATATGAACA+AGG - chr5_4:66994254-66994273 Msa0865810:CDS 35.0%
TGTTCCCAAGAGTTATGATA+AGG - chr5_4:66994286-66994305 Msa0865810:CDS 35.0%
CTGACATTTAGTCATCATAG+AGG + chr5_4:66994433-66994452 None:intergenic 35.0%
TTCAAAGCTCGAAAGAAACA+AGG + chr5_4:66994520-66994539 None:intergenic 35.0%
! GTGTTGGTAAGAACCTTTGT+TGG + chr5_4:66993197-66993216 None:intergenic 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG + chr5_4:66993348-66993367 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG - chr5_4:66993347-66993366 Msa0865810:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_4:66993461-66993480 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG - chr5_4:66993712-66993731 Msa0865810:intron 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_4:66993734-66993753 Msa0865810:intron 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG + chr5_4:66993780-66993799 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_4:66993813-66993832 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_4:66993865-66993884 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_4:66993864-66993883 Msa0865810:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_4:66993882-66993901 Msa0865810:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG - chr5_4:66994209-66994228 Msa0865810:intron 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_4:66994383-66994402 Msa0865810:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG + chr5_4:66994424-66994443 None:intergenic 40.0%
! GTGTTGGTAAGAACCTTTGT+TGG + chr5_4:66993197-66993216 None:intergenic 40.0%
! AAGAGCTTGTTCTGAACCAT+AGG + chr5_4:66993348-66993367 None:intergenic 40.0%
TATGGTTCAGAACAAGCTCT+TGG - chr5_4:66993347-66993366 Msa0865810:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG + chr5_4:66993461-66993480 None:intergenic 40.0%
!! TGGATTTGTTGATTTCGTGC+AGG - chr5_4:66993712-66993731 Msa0865810:intron 40.0%
GACTCTTCAACTAGACTACT+TGG - chr5_4:66993734-66993753 Msa0865810:intron 40.0%
! TTTCCAGGTTGAGAACTAAG+TGG + chr5_4:66993780-66993799 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG + chr5_4:66993813-66993832 None:intergenic 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG + chr5_4:66993865-66993884 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG - chr5_4:66993864-66993883 Msa0865810:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG - chr5_4:66993882-66993901 Msa0865810:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG - chr5_4:66994209-66994228 Msa0865810:intron 40.0%
AAGCAAAATCGTTTGATCCC+TGG - chr5_4:66994383-66994402 Msa0865810:CDS 40.0%
AGTCATCATAGAGGTCATTG+AGG + chr5_4:66994424-66994443 None:intergenic 40.0%
AAGGTTCTTACCAACACTCC+TGG - chr5_4:66993200-66993219 Msa0865810:three_prime_UTR 45.0%
AAGATGCCTGTGGTTGGAAT+GGG - chr5_4:66993230-66993249 Msa0865810:three_prime_UTR 45.0%
TTTGATACTGCTGCTGCCTA+TGG - chr5_4:66993329-66993348 Msa0865810:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG - chr5_4:66993352-66993371 Msa0865810:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_4:66993364-66993383 Msa0865810:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - chr5_4:66993845-66993864 Msa0865810:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG + chr5_4:66993955-66993974 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG + chr5_4:66994085-66994104 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG - chr5_4:66994172-66994191 Msa0865810:intron 45.0%
AAGGTTCTTACCAACACTCC+TGG - chr5_4:66993200-66993219 Msa0865810:three_prime_UTR 45.0%
AAGATGCCTGTGGTTGGAAT+GGG - chr5_4:66993230-66993249 Msa0865810:three_prime_UTR 45.0%
TTTGATACTGCTGCTGCCTA+TGG - chr5_4:66993329-66993348 Msa0865810:CDS 45.0%
TTCAGAACAAGCTCTTGGAG+AGG - chr5_4:66993352-66993371 Msa0865810:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG - chr5_4:66993364-66993383 Msa0865810:CDS 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG - chr5_4:66993845-66993864 Msa0865810:CDS 45.0%
ATTGACTGCTGGAAGAACAG+TGG + chr5_4:66993955-66993974 None:intergenic 45.0%
! GGTTCTTTTGTTGCCATGCA+AGG + chr5_4:66994085-66994104 None:intergenic 45.0%
CAGAGGACCAAATGAGGTTA+TGG - chr5_4:66994172-66994191 Msa0865810:intron 45.0%
! CTTCAGTTGACCAGGAGTGT+TGG + chr5_4:66993213-66993232 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG + chr5_4:66993221-66993240 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG - chr5_4:66993220-66993239 Msa0865810:three_prime_UTR 50.0%
CAACTGAAGATGCCTGTGGT+TGG - chr5_4:66993224-66993243 Msa0865810:three_prime_UTR 50.0%
GAAGATGCCTGTGGTTGGAA+TGG - chr5_4:66993229-66993248 Msa0865810:three_prime_UTR 50.0%
! TGGCCACTTAGTTCTCAACC+TGG - chr5_4:66993774-66993793 Msa0865810:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_4:66993848-66993867 Msa0865810:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_4:66994069-66994088 Msa0865810:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG - chr5_4:66994138-66994157 Msa0865810:intron 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_4:66994155-66994174 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr5_4:66994155-66994174 Msa0865810:intron 50.0%
TGCAAGCAGAGGACCAAATG+AGG - chr5_4:66994166-66994185 Msa0865810:intron 50.0%
TCATAGAGGTCATTGAGGCC+TGG + chr5_4:66994419-66994438 None:intergenic 50.0%
! CTTCAGTTGACCAGGAGTGT+TGG + chr5_4:66993213-66993232 None:intergenic 50.0%
ACAGGCATCTTCAGTTGACC+AGG + chr5_4:66993221-66993240 None:intergenic 50.0%
TGGTCAACTGAAGATGCCTG+TGG - chr5_4:66993220-66993239 Msa0865810:three_prime_UTR 50.0%
CAACTGAAGATGCCTGTGGT+TGG - chr5_4:66993224-66993243 Msa0865810:three_prime_UTR 50.0%
GAAGATGCCTGTGGTTGGAA+TGG - chr5_4:66993229-66993248 Msa0865810:three_prime_UTR 50.0%
! TGGCCACTTAGTTCTCAACC+TGG - chr5_4:66993774-66993793 Msa0865810:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG - chr5_4:66993848-66993867 Msa0865810:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG - chr5_4:66994069-66994088 Msa0865810:intron 50.0%
! TAACTGCGTTTTCGCCGTTG+AGG - chr5_4:66994138-66994157 Msa0865810:intron 50.0%
CTGCTTGCACCTTTCCTCAA+CGG + chr5_4:66994155-66994174 None:intergenic 50.0%
! TTGAGGAAAGGTGCAAGCAG+AGG - chr5_4:66994155-66994174 Msa0865810:intron 50.0%
TGCAAGCAGAGGACCAAATG+AGG - chr5_4:66994166-66994185 Msa0865810:intron 50.0%
TCATAGAGGTCATTGAGGCC+TGG + chr5_4:66994419-66994438 None:intergenic 50.0%
GCTGATCCCATTCCAACCAC+AGG + chr5_4:66993239-66993258 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG - chr5_4:66994143-66994162 Msa0865810:intron 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG + chr5_4:66994410-66994429 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG + chr5_4:66993239-66993258 None:intergenic 55.0%
! GCGTTTTCGCCGTTGAGGAA+AGG - chr5_4:66994143-66994162 Msa0865810:intron 55.0%
!! TCATTGAGGCCTGGCTTGGT+TGG + chr5_4:66994410-66994429 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+AGG - chr5_4:66994398-66994417 Msa0865810:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG + chr5_4:66994414-66994433 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+AGG - chr5_4:66994398-66994417 Msa0865810:CDS 60.0%
GAGGTCATTGAGGCCTGGCT+TGG + chr5_4:66994414-66994433 None:intergenic 60.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG + chr5_4:66994403-66994422 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG + chr5_4:66994404-66994423 None:intergenic 65.0%
!! GGCCTGGCTTGGTTGGTCCA+GGG + chr5_4:66994403-66994422 None:intergenic 65.0%
!! AGGCCTGGCTTGGTTGGTCC+AGG + chr5_4:66994404-66994423 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 66993114 66994619 66993114 ID=Msa0865810;Name=Msa0865810
chr5_4 mRNA 66993114 66994619 66993114 ID=Msa0865810-mRNA-1;Parent=Msa0865810;Name=Msa0865810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=62|1|1|1|1|1|3|174|312
chr5_4 exon 66993114 66993662 66993114 ID=Msa0865810-mRNA-1:exon:21125;Parent=Msa0865810-mRNA-1
chr5_4 exon 66993756 66993999 66993756 ID=Msa0865810-mRNA-1:exon:21124;Parent=Msa0865810-mRNA-1
chr5_4 exon 66994238 66994619 66994238 ID=Msa0865810-mRNA-1:exon:21123;Parent=Msa0865810-mRNA-1
chr5_4 five_prime_UTR 66994558 66994619 66994558 ID=Msa0865810-mRNA-1:five_prime_utr;Parent=Msa0865810-mRNA-1
chr5_4 CDS 66994238 66994557 66994238 ID=Msa0865810-mRNA-1:cds;Parent=Msa0865810-mRNA-1
chr5_4 CDS 66993756 66993999 66993756 ID=Msa0865810-mRNA-1:cds;Parent=Msa0865810-mRNA-1
chr5_4 CDS 66993288 66993662 66993288 ID=Msa0865810-mRNA-1:cds;Parent=Msa0865810-mRNA-1
chr5_4 three_prime_UTR 66993114 66993287 66993114 ID=Msa0865810-mRNA-1:three_prime_utr;Parent=Msa0865810-mRNA-1
Gene Sequence

>Msa0865810

ATGGGTAGTGTTGAAATCCCAACAAAGGTTCTTACCAACACTCCTGGTCAACTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCCTATGGTTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGAACTCTTTGTCACTTCCAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTACAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACTTGATTCATTGGCCACTTAGTTCTCAACCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTACCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTTGCCACTGTTCTTCCAGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAACCTTAGAGAGTTTTGCAATGCAAATGGAATAGTGTTAACTGCGTTTTCGCCGTTGAGGAAAGGTGCAAGCAGAGGACCAAATGAGGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGCTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGTTATGATAAGGAAAGAATGAACCAAAATTTGTGTATCTTTGATTGGTCATTGACAAAAGAAGATCATGAGAAAATCGATCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCAGGCCTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa0865810

MGSVEIPTKVLTNTPGQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREELFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKNLREFCNANGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMNQNLCIFDWSLTKEDHEKIDQIKQNRLIPGPTKPGLNDLYDD*