AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1381030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381030 MtrunA17_Chr3g0144451 97.193 285 8 0 1 285 1 285 0.0 578
Msa1381030 MtrunA17_Chr3g0138231 83.916 286 35 2 1 285 1 276 1.53e-171 475
Msa1381030 MtrunA17_Chr4g0034821 67.568 296 85 2 1 285 6 301 4.84e-143 404
Msa1381030 MtrunA17_Chr3g0144421 46.128 297 131 4 7 275 7 302 1.81e-92 276
Msa1381030 MtrunA17_Chr3g0144391 47.032 219 113 1 57 275 290 505 1.65e-70 226
Msa1381030 MtrunA17_Chr3g0144411 46.575 219 114 1 57 275 323 538 9.09e-69 222
Msa1381030 MtrunA17_Chr4g0034731 46.119 219 113 4 59 275 217 432 2.57e-65 210
Msa1381030 MtrunA17_Chr4g0034451 41.463 246 138 4 39 281 290 532 3.17e-64 210
Msa1381030 MtrunA17_Chr4g0034721 46.903 226 115 4 59 282 361 583 2.76e-62 206
Msa1381030 MtrunA17_Chr4g0034691 40.074 272 148 5 16 282 454 715 2.13e-59 201
Msa1381030 MtrunA17_Chr1g0147271 43.750 224 121 4 54 276 166 385 3.27e-59 193
Msa1381030 MtrunA17_Chr6g0485051 45.455 209 108 4 71 276 1 206 2.86e-58 185
Msa1381030 MtrunA17_Chr3g0139431 42.291 227 123 5 53 276 101 322 9.46e-56 182
Msa1381030 MtrunA17_Chr1g0147301 41.964 224 124 5 55 276 66 285 3.53e-54 177
Msa1381030 MtrunA17_Chr1g0147331 40.625 224 126 5 54 276 108 325 1.43e-53 177
Msa1381030 MtrunA17_Chr1g0147291 41.704 223 122 5 55 276 52 267 3.38e-53 174
Msa1381030 MtrunA17_Chr1g0146631 40.179 224 127 5 54 276 108 325 1.27e-52 174
Msa1381030 MtrunA17_Chr1g0147321 41.364 220 121 5 55 273 23 235 3.49e-52 171
Msa1381030 MtrunA17_Chr1g0147311 41.071 224 126 5 55 276 137 356 2.28e-51 172
Msa1381030 MtrunA17_Chr1g0147261 40.090 222 127 4 55 276 85 300 4.43e-51 169
Msa1381030 MtrunA17_Chr1g0147251 39.640 222 125 4 55 276 31 243 1.11e-49 164
Msa1381030 MtrunA17_Chr1g0147241 38.839 224 131 3 53 276 96 313 7.62e-49 164
Msa1381030 MtrunA17_Chr8g0365361 31.674 221 138 6 59 274 181 393 8.57e-30 116
Msa1381030 MtrunA17_Chr5g0413591 32.432 222 135 7 59 274 415 627 7.40e-29 115
Msa1381030 MtrunA17_Chr8g0365401 31.982 222 136 7 59 274 412 624 2.31e-27 111
Msa1381030 MtrunA17_Chr3g0117791 31.963 219 140 6 59 274 413 625 1.46e-25 105
Msa1381030 MtrunA17_Chr4g0034051 54.430 79 34 2 199 275 1 79 3.20e-25 96.3
Msa1381030 MtrunA17_Chr8g0365381 30.455 220 140 5 59 273 429 640 7.75e-25 103
Msa1381030 MtrunA17_Chr4g0076231 32.903 155 99 4 121 273 5 156 1.16e-24 97.1
Msa1381030 MtrunA17_Chr8g0355871 38.514 148 81 5 128 275 85 222 2.54e-20 87.4
Msa1381030 MtrunA17_Chr5g0412981 27.189 217 153 3 58 273 196 408 2.54e-19 87.0
Msa1381030 MtrunA17_Chr5g0412981 27.160 162 113 3 97 257 27 184 6.25e-14 71.2
Msa1381030 MtrunA17_Chr5g0412991 27.189 217 153 3 58 273 196 408 2.83e-19 87.0
Msa1381030 MtrunA17_Chr5g0412991 27.160 162 113 3 97 257 27 184 1.88e-13 70.1
Msa1381030 MtrunA17_Chr8g0355311 35.135 148 86 5 128 275 53 190 2.99e-19 83.6
Msa1381030 MtrunA17_Chr8g0355321 37.500 144 74 5 135 275 172 302 8.10e-18 81.6
Msa1381030 MtrunA17_Chr8g0355861 34.459 148 87 4 128 275 123 260 1.12e-17 80.9
Msa1381030 MtrunA17_Chr5g0412951 26.190 210 150 3 65 273 2 207 2.62e-17 78.6
Msa1381030 MtrunA17_Chr2g0318871 34.228 149 88 5 129 277 123 261 1.76e-16 77.4
Msa1381030 MtrunA17_Chr2g0318901 34.722 144 84 5 134 277 128 261 2.77e-16 77.0
Msa1381030 MtrunA17_Chr8g0355841 34.043 141 83 4 135 275 379 509 1.45e-15 76.6
Msa1381030 MtrunA17_Chr8g0355331 34.722 144 78 5 135 275 291 421 2.53e-15 75.5
Msa1381030 MtrunA17_Chr8g0371951 44.737 76 37 4 192 264 14 87 1.80e-14 67.4
Msa1381030 MtrunA17_Chr8g0355831 32.432 148 90 4 128 275 214 351 3.24e-14 72.0
Msa1381030 MtrunA17_Chr1g0168781 32.215 149 92 5 128 276 121 260 3.86e-14 70.9
Msa1381030 MtrunA17_Chr2g0318931 33.103 145 85 6 135 277 138 272 2.77e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1381030 AT1G49320.1 38.790 281 160 5 1 276 7 280 7.38e-67 210
Msa1381030 AT5G25610.1 42.152 223 124 5 53 273 170 389 5.57e-52 175
Msa1381030 AT1G60390.1 31.081 222 136 6 59 273 409 620 4.36e-26 107
Msa1381030 AT1G70370.2 30.045 223 139 5 59 274 411 623 7.83e-24 101
Msa1381030 AT1G70370.1 30.045 223 139 5 59 274 411 623 7.83e-24 101
Msa1381030 AT1G23760.1 28.767 219 147 6 59 274 407 619 1.47e-22 97.8

Find 70 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCTTGTGATTTCAATTT+AGG 0.099086 tig0020421:-66267 None:intergenic
CATGTTTCATTTCAAGTTCT+TGG 0.201295 tig0020421:+66183 Msa1381030:CDS
ATTCTTCACTTTGAAAGATT+TGG 0.265422 tig0020421:+65618 Msa1381030:CDS
AACCTTGTGATTTCAATTTA+GGG 0.289344 tig0020421:-66266 None:intergenic
TTGAAAAGTAACACTTGATT+TGG 0.297099 tig0020421:-65953 None:intergenic
GAATTTACACAAAACATTCT+TGG 0.298406 tig0020421:+65889 Msa1381030:CDS
AAGTGATTCAGCTTCTTCTT+TGG 0.321679 tig0020421:-65707 None:intergenic
TCAAATGGGTGGTTAGATAT+AGG 0.325253 tig0020421:-66459 None:intergenic
AGTGATTCAGCTTCTTCTTT+GGG 0.342654 tig0020421:-65706 None:intergenic
CTTCTTTGGGCCATAACTTA+GGG 0.345605 tig0020421:-65693 None:intergenic
GAACTTAACCTCTCCTTTGA+TGG 0.356006 tig0020421:-65839 None:intergenic
GTGTGACAAGCCACCATCTT+TGG 0.368463 tig0020421:-66015 None:intergenic
GCATTTCATTATGTTCTCTT+GGG 0.369117 tig0020421:-65255 None:intergenic
TCCCAGCGGACAATTACATT+TGG 0.373004 tig0020421:+66241 Msa1381030:CDS
TCTTCTTTGGGCCATAACTT+AGG 0.375370 tig0020421:-65694 None:intergenic
AGCATTTCATTATGTTCTCT+TGG 0.376189 tig0020421:-65256 None:intergenic
GAACATAATGAAATGCTAAC+TGG 0.379487 tig0020421:+65262 Msa1381030:five_prime_UTR
GAAGTTGATGGGTCTCTCTT+AGG 0.380142 tig0020421:-65670 None:intergenic
CAAATGGGTGGTTAGATATA+GGG 0.382078 tig0020421:-66458 None:intergenic
TTTGTGTTCATGTGCTTCAA+TGG 0.387687 tig0020421:+66341 Msa1381030:three_prime_UTR
CCCAGCGGACAATTACATTT+GGG 0.389028 tig0020421:+66242 Msa1381030:CDS
GGCTATGGTGGTTTGTCACT+TGG 0.403171 tig0020421:+66137 Msa1381030:CDS
TCATCTACTAGTAATCCTTC+TGG 0.409210 tig0020421:+65398 Msa1381030:CDS
TTTCAACCAATTCCCTAGCT+TGG 0.420546 tig0020421:-65516 None:intergenic
CATAACTTAGGGGAAGTTGA+TGG 0.430077 tig0020421:-65682 None:intergenic
ACTTTGAAAGATTTGGAAGT+AGG 0.431659 tig0020421:+65625 Msa1381030:CDS
ATAGTCAAGAAAGTGAGAAT+AGG 0.435139 tig0020421:+66070 Msa1381030:CDS
TAAGGTGCTTTCCATTGCTA+TGG 0.435162 tig0020421:-65797 None:intergenic
TGGAGATAAGGTTGAGGCTA+TGG 0.442985 tig0020421:+66122 Msa1381030:CDS
GAGAGTTGGTTTGATGAGAA+AGG 0.452149 tig0020421:-65730 None:intergenic
GACTCATATGATTATGATGA+TGG 0.452194 tig0020421:-65570 None:intergenic
TGGAGACCAAGCTAGGGAAT+TGG 0.452353 tig0020421:+65510 Msa1381030:CDS
CTTTCCATTGCTATGGCTTG+TGG 0.462619 tig0020421:-65790 None:intergenic
TGACACACAGAAGAGCTTCC+TGG 0.469514 tig0020421:-66213 None:intergenic
CATCAACTTCCCCTAAGTTA+TGG 0.470154 tig0020421:+65683 Msa1381030:CDS
TGTGCAAAGTTGCATAAGCT+TGG 0.472166 tig0020421:-65927 None:intergenic
CAAGTTCTTGGTGTCACACC+AGG 0.473983 tig0020421:+66195 Msa1381030:CDS
TAATATTGATCCTTCACTAA+TGG 0.474162 tig0020421:+65594 Msa1381030:CDS
CCCAAATGTAATTGTCCGCT+GGG 0.478272 tig0020421:-66242 None:intergenic
TAGTCAAGAAAGTGAGAATA+GGG 0.482578 tig0020421:+66071 Msa1381030:CDS
TTTCTCATGGAGACCAAGCT+AGG 0.482788 tig0020421:+65503 Msa1381030:CDS
TCACTTGGATACATCACAAT+GGG 0.486976 tig0020421:+66152 Msa1381030:CDS
GGAAGAGAACAAGATTGAAA+AGG 0.490541 tig0020421:-65218 None:intergenic
AACTCTTCACAGTTATCGCT+TGG 0.503554 tig0020421:-65321 None:intergenic
ACCCAAATGTAATTGTCCGC+TGG 0.506688 tig0020421:-66243 None:intergenic
CAACTTTGAAAGTAGAAACA+TGG 0.510079 tig0020421:+65344 Msa1381030:exon
AACTTAACCTCTCCTTTGAT+GGG 0.514268 tig0020421:-65838 None:intergenic
CACTATAGTAGAAATTATGA+TGG 0.530352 tig0020421:+65981 Msa1381030:CDS
AGATAAGGTTGAGGCTATGG+TGG 0.538336 tig0020421:+66125 Msa1381030:CDS
AAATTCTTCTCTTTCTCTCG+AGG 0.539084 tig0020421:+65763 Msa1381030:CDS
TTCAAGCATAGATTCTAAAG+AGG 0.545516 tig0020421:-65869 None:intergenic
ATAACTTAGGGGAAGTTGAT+GGG 0.567226 tig0020421:-65681 None:intergenic
TTACTAGTAGATGAAGAAAG+AGG 0.580251 tig0020421:-65389 None:intergenic
GTGAAGAATACCATTAGTGA+AGG 0.584434 tig0020421:-65604 None:intergenic
TGTGAAAGCAAACCCATCAA+AGG 0.587824 tig0020421:+65826 Msa1381030:CDS
CAATCTTGTTCTCTTCCTCG+AGG 0.589849 tig0020421:+65224 Msa1381030:five_prime_UTR
TTCTCATGGAGACCAAGCTA+GGG 0.591351 tig0020421:+65504 Msa1381030:CDS
AACTTTGAAAGTAGAAACAT+GGG 0.596266 tig0020421:+65345 Msa1381030:exon
GGAAATTCTAGCTCCAAAGA+TGG 0.597283 tig0020421:+66002 Msa1381030:CDS
GTCCCTAAATTGAAATCACA+AGG 0.602399 tig0020421:+66264 Msa1381030:CDS
TTCTTTGGGCCATAACTTAG+GGG 0.604761 tig0020421:-65692 None:intergenic
TGAGAATGGAGATAAGGTTG+AGG 0.616111 tig0020421:+66116 Msa1381030:CDS
TTCACCACAAGCCATAGCAA+TGG 0.617486 tig0020421:+65786 Msa1381030:CDS
TTGGTTAGATGACTAGAATG+AGG 0.630874 tig0020421:-65302 None:intergenic
GTCACTTGGATACATCACAA+TGG 0.635200 tig0020421:+66151 Msa1381030:CDS
ACTTGAAATGAAACATGACT+AGG 0.655390 tig0020421:-66177 None:intergenic
AATTCTAGCTCCAAAGATGG+TGG 0.662511 tig0020421:+66005 Msa1381030:CDS
AAGCAAACCCATCAAAGGAG+AGG 0.675310 tig0020421:+65831 Msa1381030:CDS
GTGGTTAGATATAGGGACGG+AGG 0.690895 tig0020421:-66451 None:intergenic
TGGGTGGTTAGATATAGGGA+CGG 0.715649 tig0020421:-66454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGGAATAAATTTTATATCT+TGG + tig0020421:65364-65383 Msa1381030:CDS 20.0%
!! TAAATATTTAACATACCAGA+AGG - tig0020421:65416-65435 None:intergenic 20.0%
!!! TGGGAATAAATTTTATATCT+TGG + tig0020421:65364-65383 Msa1381030:CDS 20.0%
!! TAAATATTTAACATACCAGA+AGG - tig0020421:65416-65435 None:intergenic 20.0%
!! AACTTTGAAAGTAGAAACAT+GGG + tig0020421:65345-65364 Msa1381030:exon 25.0%
!!! GAATTTTTTCAGTTTTCTCA+TGG + tig0020421:65490-65509 Msa1381030:intron 25.0%
! TAATATTGATCCTTCACTAA+TGG + tig0020421:65594-65613 Msa1381030:CDS 25.0%
!! ATTCTTCACTTTGAAAGATT+TGG + tig0020421:65618-65637 Msa1381030:CDS 25.0%
!!! ATTTTAGAAGATATGAGAGT+TGG - tig0020421:65747-65766 None:intergenic 25.0%
!! TTTGCTTTCACATTCTTTTA+AGG - tig0020421:65818-65837 None:intergenic 25.0%
! GAATTTACACAAAACATTCT+TGG + tig0020421:65889-65908 Msa1381030:CDS 25.0%
! TTGAAAAGTAACACTTGATT+TGG - tig0020421:65956-65975 None:intergenic 25.0%
! CACTATAGTAGAAATTATGA+TGG + tig0020421:65981-66000 Msa1381030:CDS 25.0%
! TAAAAAACAGCATAAGGATA+AGG - tig0020421:66045-66064 None:intergenic 25.0%
! TGACAATAAAAAACAGCATA+AGG - tig0020421:66051-66070 None:intergenic 25.0%
!!! TAGGGTGTATAAAGTTTTAT+TGG + tig0020421:66089-66108 Msa1381030:CDS 25.0%
!!! AGGGTGTATAAAGTTTTATT+GGG + tig0020421:66090-66109 Msa1381030:CDS 25.0%
! AACCTTGTGATTTCAATTTA+GGG - tig0020421:66269-66288 None:intergenic 25.0%
!! AACTTTGAAAGTAGAAACAT+GGG + tig0020421:65345-65364 Msa1381030:exon 25.0%
!!! GAATTTTTTCAGTTTTCTCA+TGG + tig0020421:65490-65509 Msa1381030:intron 25.0%
! TAATATTGATCCTTCACTAA+TGG + tig0020421:65594-65613 Msa1381030:CDS 25.0%
!! ATTCTTCACTTTGAAAGATT+TGG + tig0020421:65618-65637 Msa1381030:CDS 25.0%
!!! ATTTTAGAAGATATGAGAGT+TGG - tig0020421:65747-65766 None:intergenic 25.0%
!! TTTGCTTTCACATTCTTTTA+AGG - tig0020421:65818-65837 None:intergenic 25.0%
! GAATTTACACAAAACATTCT+TGG + tig0020421:65889-65908 Msa1381030:CDS 25.0%
! TTGAAAAGTAACACTTGATT+TGG - tig0020421:65956-65975 None:intergenic 25.0%
! CACTATAGTAGAAATTATGA+TGG + tig0020421:65981-66000 Msa1381030:CDS 25.0%
! TAAAAAACAGCATAAGGATA+AGG - tig0020421:66045-66064 None:intergenic 25.0%
! TGACAATAAAAAACAGCATA+AGG - tig0020421:66051-66070 None:intergenic 25.0%
!!! TAGGGTGTATAAAGTTTTAT+TGG + tig0020421:66089-66108 Msa1381030:CDS 25.0%
!!! AGGGTGTATAAAGTTTTATT+GGG + tig0020421:66090-66109 Msa1381030:CDS 25.0%
! AACCTTGTGATTTCAATTTA+GGG - tig0020421:66269-66288 None:intergenic 25.0%
GCATTTCATTATGTTCTCTT+GGG - tig0020421:65258-65277 None:intergenic 30.0%
AGCATTTCATTATGTTCTCT+TGG - tig0020421:65259-65278 None:intergenic 30.0%
GAACATAATGAAATGCTAAC+TGG + tig0020421:65262-65281 Msa1381030:five_prime_UTR 30.0%
! CAACTTTGAAAGTAGAAACA+TGG + tig0020421:65344-65363 Msa1381030:exon 30.0%
TTACTAGTAGATGAAGAAAG+AGG - tig0020421:65392-65411 None:intergenic 30.0%
GACTCATATGATTATGATGA+TGG - tig0020421:65573-65592 None:intergenic 30.0%
! ACTTTGAAAGATTTGGAAGT+AGG + tig0020421:65625-65644 Msa1381030:CDS 30.0%
! TTCAAGCATAGATTCTAAAG+AGG - tig0020421:65872-65891 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG + tig0020421:66070-66089 Msa1381030:CDS 30.0%
TAGTCAAGAAAGTGAGAATA+GGG + tig0020421:66071-66090 Msa1381030:CDS 30.0%
!!! GGGTGTATAAAGTTTTATTG+GGG + tig0020421:66091-66110 Msa1381030:CDS 30.0%
!!! GGTGTATAAAGTTTTATTGG+GGG + tig0020421:66092-66111 Msa1381030:CDS 30.0%
!!! GTGTATAAAGTTTTATTGGG+GGG + tig0020421:66093-66112 Msa1381030:CDS 30.0%
ACTTGAAATGAAACATGACT+AGG - tig0020421:66180-66199 None:intergenic 30.0%
!! CATGTTTCATTTCAAGTTCT+TGG + tig0020421:66183-66202 Msa1381030:CDS 30.0%
GAACCTTGTGATTTCAATTT+AGG - tig0020421:66270-66289 None:intergenic 30.0%
GCATTTCATTATGTTCTCTT+GGG - tig0020421:65258-65277 None:intergenic 30.0%
AGCATTTCATTATGTTCTCT+TGG - tig0020421:65259-65278 None:intergenic 30.0%
GAACATAATGAAATGCTAAC+TGG + tig0020421:65262-65281 Msa1381030:five_prime_UTR 30.0%
! CAACTTTGAAAGTAGAAACA+TGG + tig0020421:65344-65363 Msa1381030:exon 30.0%
TTACTAGTAGATGAAGAAAG+AGG - tig0020421:65392-65411 None:intergenic 30.0%
GACTCATATGATTATGATGA+TGG - tig0020421:65573-65592 None:intergenic 30.0%
! ACTTTGAAAGATTTGGAAGT+AGG + tig0020421:65625-65644 Msa1381030:CDS 30.0%
! TTCAAGCATAGATTCTAAAG+AGG - tig0020421:65872-65891 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG + tig0020421:66070-66089 Msa1381030:CDS 30.0%
TAGTCAAGAAAGTGAGAATA+GGG + tig0020421:66071-66090 Msa1381030:CDS 30.0%
!!! GGGTGTATAAAGTTTTATTG+GGG + tig0020421:66091-66110 Msa1381030:CDS 30.0%
!!! GGTGTATAAAGTTTTATTGG+GGG + tig0020421:66092-66111 Msa1381030:CDS 30.0%
!!! GTGTATAAAGTTTTATTGGG+GGG + tig0020421:66093-66112 Msa1381030:CDS 30.0%
ACTTGAAATGAAACATGACT+AGG - tig0020421:66180-66199 None:intergenic 30.0%
!! CATGTTTCATTTCAAGTTCT+TGG + tig0020421:66183-66202 Msa1381030:CDS 30.0%
GAACCTTGTGATTTCAATTT+AGG - tig0020421:66270-66289 None:intergenic 30.0%
GGAAGAGAACAAGATTGAAA+AGG - tig0020421:65221-65240 None:intergenic 35.0%
TTGGTTAGATGACTAGAATG+AGG - tig0020421:65305-65324 None:intergenic 35.0%
TCATCTACTAGTAATCCTTC+TGG + tig0020421:65398-65417 Msa1381030:CDS 35.0%
GTGAAGAATACCATTAGTGA+AGG - tig0020421:65607-65626 None:intergenic 35.0%
! ATAACTTAGGGGAAGTTGAT+GGG - tig0020421:65684-65703 None:intergenic 35.0%
AGTGATTCAGCTTCTTCTTT+GGG - tig0020421:65709-65728 None:intergenic 35.0%
AAGTGATTCAGCTTCTTCTT+TGG - tig0020421:65710-65729 None:intergenic 35.0%
AAATTCTTCTCTTTCTCTCG+AGG + tig0020421:65763-65782 Msa1381030:CDS 35.0%
AACTTAACCTCTCCTTTGAT+GGG - tig0020421:65841-65860 None:intergenic 35.0%
TCACTTGGATACATCACAAT+GGG + tig0020421:66152-66171 Msa1381030:CDS 35.0%
GTCCCTAAATTGAAATCACA+AGG + tig0020421:66264-66283 Msa1381030:CDS 35.0%
TTTGTGTTCATGTGCTTCAA+TGG + tig0020421:66341-66360 Msa1381030:three_prime_UTR 35.0%
GGAAGAGAACAAGATTGAAA+AGG - tig0020421:65221-65240 None:intergenic 35.0%
TTGGTTAGATGACTAGAATG+AGG - tig0020421:65305-65324 None:intergenic 35.0%
TCATCTACTAGTAATCCTTC+TGG + tig0020421:65398-65417 Msa1381030:CDS 35.0%
GTGAAGAATACCATTAGTGA+AGG - tig0020421:65607-65626 None:intergenic 35.0%
! ATAACTTAGGGGAAGTTGAT+GGG - tig0020421:65684-65703 None:intergenic 35.0%
AGTGATTCAGCTTCTTCTTT+GGG - tig0020421:65709-65728 None:intergenic 35.0%
AAGTGATTCAGCTTCTTCTT+TGG - tig0020421:65710-65729 None:intergenic 35.0%
AAATTCTTCTCTTTCTCTCG+AGG + tig0020421:65763-65782 Msa1381030:CDS 35.0%
AACTTAACCTCTCCTTTGAT+GGG - tig0020421:65841-65860 None:intergenic 35.0%
TCACTTGGATACATCACAAT+GGG + tig0020421:66152-66171 Msa1381030:CDS 35.0%
GTCCCTAAATTGAAATCACA+AGG + tig0020421:66264-66283 Msa1381030:CDS 35.0%
TTTGTGTTCATGTGCTTCAA+TGG + tig0020421:66341-66360 Msa1381030:three_prime_UTR 35.0%
AACTCTTCACAGTTATCGCT+TGG - tig0020421:65324-65343 None:intergenic 40.0%
TTTCAACCAATTCCCTAGCT+TGG - tig0020421:65519-65538 None:intergenic 40.0%
CATAACTTAGGGGAAGTTGA+TGG - tig0020421:65685-65704 None:intergenic 40.0%
CATCAACTTCCCCTAAGTTA+TGG + tig0020421:65683-65702 Msa1381030:CDS 40.0%
TTCTTTGGGCCATAACTTAG+GGG - tig0020421:65695-65714 None:intergenic 40.0%
CTTCTTTGGGCCATAACTTA+GGG - tig0020421:65696-65715 None:intergenic 40.0%
TCTTCTTTGGGCCATAACTT+AGG - tig0020421:65697-65716 None:intergenic 40.0%
!! GAGAGTTGGTTTGATGAGAA+AGG - tig0020421:65733-65752 None:intergenic 40.0%
! TAAGGTGCTTTCCATTGCTA+TGG - tig0020421:65800-65819 None:intergenic 40.0%
TGTGAAAGCAAACCCATCAA+AGG + tig0020421:65826-65845 Msa1381030:CDS 40.0%
GAACTTAACCTCTCCTTTGA+TGG - tig0020421:65842-65861 None:intergenic 40.0%
TGTGCAAAGTTGCATAAGCT+TGG - tig0020421:65930-65949 None:intergenic 40.0%
!! GGAAATTCTAGCTCCAAAGA+TGG + tig0020421:66002-66021 Msa1381030:CDS 40.0%
!! AATTCTAGCTCCAAAGATGG+TGG + tig0020421:66005-66024 Msa1381030:CDS 40.0%
TGAGAATGGAGATAAGGTTG+AGG + tig0020421:66116-66135 Msa1381030:CDS 40.0%
GTCACTTGGATACATCACAA+TGG + tig0020421:66151-66170 Msa1381030:CDS 40.0%
!!! TGTGTGTCATTTTTTCCCAG+CGG + tig0020421:66227-66246 Msa1381030:CDS 40.0%
AACTCTTCACAGTTATCGCT+TGG - tig0020421:65324-65343 None:intergenic 40.0%
TTTCAACCAATTCCCTAGCT+TGG - tig0020421:65519-65538 None:intergenic 40.0%
CATAACTTAGGGGAAGTTGA+TGG - tig0020421:65685-65704 None:intergenic 40.0%
CATCAACTTCCCCTAAGTTA+TGG + tig0020421:65683-65702 Msa1381030:CDS 40.0%
TTCTTTGGGCCATAACTTAG+GGG - tig0020421:65695-65714 None:intergenic 40.0%
CTTCTTTGGGCCATAACTTA+GGG - tig0020421:65696-65715 None:intergenic 40.0%
TCTTCTTTGGGCCATAACTT+AGG - tig0020421:65697-65716 None:intergenic 40.0%
!! GAGAGTTGGTTTGATGAGAA+AGG - tig0020421:65733-65752 None:intergenic 40.0%
! TAAGGTGCTTTCCATTGCTA+TGG - tig0020421:65800-65819 None:intergenic 40.0%
TGTGAAAGCAAACCCATCAA+AGG + tig0020421:65826-65845 Msa1381030:CDS 40.0%
GAACTTAACCTCTCCTTTGA+TGG - tig0020421:65842-65861 None:intergenic 40.0%
TGTGCAAAGTTGCATAAGCT+TGG - tig0020421:65930-65949 None:intergenic 40.0%
!! GGAAATTCTAGCTCCAAAGA+TGG + tig0020421:66002-66021 Msa1381030:CDS 40.0%
!! AATTCTAGCTCCAAAGATGG+TGG + tig0020421:66005-66024 Msa1381030:CDS 40.0%
TGAGAATGGAGATAAGGTTG+AGG + tig0020421:66116-66135 Msa1381030:CDS 40.0%
GTCACTTGGATACATCACAA+TGG + tig0020421:66151-66170 Msa1381030:CDS 40.0%
!!! TGTGTGTCATTTTTTCCCAG+CGG + tig0020421:66227-66246 Msa1381030:CDS 40.0%
CAATCTTGTTCTCTTCCTCG+AGG + tig0020421:65224-65243 Msa1381030:five_prime_UTR 45.0%
TTTCTCATGGAGACCAAGCT+AGG + tig0020421:65503-65522 Msa1381030:CDS 45.0%
TTCTCATGGAGACCAAGCTA+GGG + tig0020421:65504-65523 Msa1381030:CDS 45.0%
!! GAAGTTGATGGGTCTCTCTT+AGG - tig0020421:65673-65692 None:intergenic 45.0%
TTCACCACAAGCCATAGCAA+TGG + tig0020421:65786-65805 Msa1381030:CDS 45.0%
CTTTCCATTGCTATGGCTTG+TGG - tig0020421:65793-65812 None:intergenic 45.0%
AAGCAAACCCATCAAAGGAG+AGG + tig0020421:65831-65850 Msa1381030:CDS 45.0%
!! GTTTTATTGGGGGGTGAGAA+TGG + tig0020421:66102-66121 Msa1381030:CDS 45.0%
TGGAGATAAGGTTGAGGCTA+TGG + tig0020421:66122-66141 Msa1381030:CDS 45.0%
AGATAAGGTTGAGGCTATGG+TGG + tig0020421:66125-66144 Msa1381030:CDS 45.0%
TCCCAGCGGACAATTACATT+TGG + tig0020421:66241-66260 Msa1381030:CDS 45.0%
CCCAAATGTAATTGTCCGCT+GGG - tig0020421:66245-66264 None:intergenic 45.0%
CCCAGCGGACAATTACATTT+GGG + tig0020421:66242-66261 Msa1381030:CDS 45.0%
ACCCAAATGTAATTGTCCGC+TGG - tig0020421:66246-66265 None:intergenic 45.0%
CAATCTTGTTCTCTTCCTCG+AGG + tig0020421:65224-65243 Msa1381030:five_prime_UTR 45.0%
TTTCTCATGGAGACCAAGCT+AGG + tig0020421:65503-65522 Msa1381030:CDS 45.0%
TTCTCATGGAGACCAAGCTA+GGG + tig0020421:65504-65523 Msa1381030:CDS 45.0%
!! GAAGTTGATGGGTCTCTCTT+AGG - tig0020421:65673-65692 None:intergenic 45.0%
TTCACCACAAGCCATAGCAA+TGG + tig0020421:65786-65805 Msa1381030:CDS 45.0%
CTTTCCATTGCTATGGCTTG+TGG - tig0020421:65793-65812 None:intergenic 45.0%
AAGCAAACCCATCAAAGGAG+AGG + tig0020421:65831-65850 Msa1381030:CDS 45.0%
!! GTTTTATTGGGGGGTGAGAA+TGG + tig0020421:66102-66121 Msa1381030:CDS 45.0%
TGGAGATAAGGTTGAGGCTA+TGG + tig0020421:66122-66141 Msa1381030:CDS 45.0%
AGATAAGGTTGAGGCTATGG+TGG + tig0020421:66125-66144 Msa1381030:CDS 45.0%
TCCCAGCGGACAATTACATT+TGG + tig0020421:66241-66260 Msa1381030:CDS 45.0%
CCCAAATGTAATTGTCCGCT+GGG - tig0020421:66245-66264 None:intergenic 45.0%
CCCAGCGGACAATTACATTT+GGG + tig0020421:66242-66261 Msa1381030:CDS 45.0%
ACCCAAATGTAATTGTCCGC+TGG - tig0020421:66246-66265 None:intergenic 45.0%
!!! GATTATTATAAAATTTTATT+TGG - tig0020421:65177-65196 None:intergenic 5.0%
!!! GATTATTATAAAATTTTATT+TGG - tig0020421:65177-65196 None:intergenic 5.0%
! TCTTGGGCACATTTTCCTCG+AGG - tig0020421:65242-65261 None:intergenic 50.0%
TGGAGACCAAGCTAGGGAAT+TGG + tig0020421:65510-65529 Msa1381030:CDS 50.0%
GTGTGACAAGCCACCATCTT+TGG - tig0020421:66018-66037 None:intergenic 50.0%
! GGCTATGGTGGTTTGTCACT+TGG + tig0020421:66137-66156 Msa1381030:CDS 50.0%
!! CAAGTTCTTGGTGTCACACC+AGG + tig0020421:66195-66214 Msa1381030:CDS 50.0%
TGACACACAGAAGAGCTTCC+TGG - tig0020421:66216-66235 None:intergenic 50.0%
! TCTTGGGCACATTTTCCTCG+AGG - tig0020421:65242-65261 None:intergenic 50.0%
TGGAGACCAAGCTAGGGAAT+TGG + tig0020421:65510-65529 Msa1381030:CDS 50.0%
GTGTGACAAGCCACCATCTT+TGG - tig0020421:66018-66037 None:intergenic 50.0%
! GGCTATGGTGGTTTGTCACT+TGG + tig0020421:66137-66156 Msa1381030:CDS 50.0%
!! CAAGTTCTTGGTGTCACACC+AGG + tig0020421:66195-66214 Msa1381030:CDS 50.0%
TGACACACAGAAGAGCTTCC+TGG - tig0020421:66216-66235 None:intergenic 50.0%
GGGGGGTGAGAATGGAGATA+AGG + tig0020421:66110-66129 Msa1381030:CDS 55.0%
GGGGGGTGAGAATGGAGATA+AGG + tig0020421:66110-66129 Msa1381030:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0020421 gene 65151 66468 65151 ID=Msa1381030;Name=Msa1381030
tig0020421 mRNA 65151 66468 65151 ID=Msa1381030-mRNA-1;Parent=Msa1381030;Name=Msa1381030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=212|1|1|1|1|1|2|166|285
tig0020421 exon 65151 65419 65151 ID=Msa1381030-mRNA-1:exon:7329;Parent=Msa1381030-mRNA-1
tig0020421 exon 65502 66468 65502 ID=Msa1381030-mRNA-1:exon:7330;Parent=Msa1381030-mRNA-1
tig0020421 five_prime_UTR 65151 65362 65151 ID=Msa1381030-mRNA-1:five_prime_utr;Parent=Msa1381030-mRNA-1
tig0020421 CDS 65363 65419 65363 ID=Msa1381030-mRNA-1:cds;Parent=Msa1381030-mRNA-1
tig0020421 CDS 65502 66302 65502 ID=Msa1381030-mRNA-1:cds;Parent=Msa1381030-mRNA-1
tig0020421 three_prime_UTR 66303 66468 66303 ID=Msa1381030-mRNA-1:three_prime_utr;Parent=Msa1381030-mRNA-1
Gene Sequence

>Msa1381030

ATGGGAATAAATTTTATATCTTGGATCCTCTTTCTTCATCTACTAGTAATCCTTCTGTTTTCTCATGGAGACCAAGCTAGGGAATTGGTTGAAACAGAAGACAAATCATTGAAAATTCAACACAACCATCATCATAATCATATGAGTCATAATATTGATCCTTCACTAATGGTATTCTTCACTTTGAAAGATTTGGAAGTAGGAAAAATAATGCAAATTTATTTTCCTAAGAGAGACCCATCAACTTCCCCTAAGTTATGGCCCAAAGAAGAAGCTGAATCACTTCCTTTCTCATCAAACCAACTCTCATATCTTCTAAAATTCTTCTCTTTCTCTCGAGGTTCACCACAAGCCATAGCAATGGAAAGCACCTTAAAAGAATGTGAAAGCAAACCCATCAAAGGAGAGGTTAAGTTCTGTGCTACCTCTTTAGAATCTATGCTTGAATTTACACAAAACATTCTTGGTTCAGAATCTGATATCCAAGCTTATGCAACTTTGCACAAAACCAAATCAAGTGTTACTTTTCAAAACTACACTATAGTAGAAATTATGATGGAAATTCTAGCTCCAAAGATGGTGGCTTGTCACACTGTGCCTTATCCTTATGCTGTTTTTTATTGTCATAGTCAAGAAAGTGAGAATAGGGTGTATAAAGTTTTATTGGGGGGTGAGAATGGAGATAAGGTTGAGGCTATGGTGGTTTGTCACTTGGATACATCACAATGGGCACCTAGTCATGTTTCATTTCAAGTTCTTGGTGTCACACCAGGAAGCTCTTCTGTGTGTCATTTTTTCCCAGCGGACAATTACATTTGGGTCCCTAAATTGAAATCACAAGGTTCTTCTAGCATGTGA

Protein sequence

>Msa1381030

MGINFISWILFLHLLVILLFSHGDQARELVETEDKSLKIQHNHHHNHMSHNIDPSLMVFFTLKDLEVGKIMQIYFPKRDPSTSPKLWPKEEAESLPFSSNQLSYLLKFFSFSRGSPQAIAMESTLKECESKPIKGEVKFCATSLESMLEFTQNILGSESDIQAYATLHKTKSSVTFQNYTIVEIMMEILAPKMVACHTVPYPYAVFYCHSQESENRVYKVLLGGENGDKVEAMVVCHLDTSQWAPSHVSFQVLGVTPGSSSVCHFFPADNYIWVPKLKSQGSSSM*