Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381030 | XP_003603902.1 | 97.193 | 285 | 8 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381030 | sp|Q9XI99|USPL1_ARATH | 38.790 | 281 | 160 | 5 | 1 | 276 | 7 | 280 | 7.26e-66 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381030 | G7J6J4 | 97.193 | 285 | 8 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa1381030 | 0.808244 | 3.406435e-50 | -8.615850e-47 |
| Msa0015150 | Msa1381030 | 0.818023 | 2.433611e-52 | -8.615850e-47 |
| Msa0017750 | Msa1381030 | 0.807747 | 4.346427e-50 | -8.615850e-47 |
| Msa0025160 | Msa1381030 | 0.846669 | 1.878520e-59 | -8.615850e-47 |
| Msa0029990 | Msa1381030 | 0.807318 | 5.358790e-50 | -8.615850e-47 |
| Msa0038530 | Msa1381030 | 0.848118 | 7.513480e-60 | -8.615850e-47 |
| Msa0044160 | Msa1381030 | 0.814851 | 1.247879e-51 | -8.615850e-47 |
| Msa0044780 | Msa1381030 | -0.805091 | 1.578160e-49 | -8.615850e-47 |
| Msa0045810 | Msa1381030 | 0.816208 | 6.225505e-52 | -8.615850e-47 |
| Msa0053000 | Msa1381030 | 0.803578 | 3.260705e-49 | -8.615850e-47 |
| Msa0064120 | Msa1381030 | 0.802591 | 5.217280e-49 | -8.615850e-47 |
| Msa0071840 | Msa1381030 | 0.816130 | 6.479456e-52 | -8.615850e-47 |
| Msa0072520 | Msa1381030 | 0.849535 | 3.038294e-60 | -8.615850e-47 |
| Msa0079880 | Msa1381030 | 0.801937 | 7.112452e-49 | -8.615850e-47 |
| Msa0081030 | Msa1381030 | 0.811761 | 5.956178e-51 | -8.615850e-47 |
| Msa0086250 | Msa1381030 | 0.834452 | 2.973461e-56 | -8.615850e-47 |
| Msa0091350 | Msa1381030 | 0.811643 | 6.319247e-51 | -8.615850e-47 |
| Msa0092350 | Msa1381030 | 0.806328 | 8.678588e-50 | -8.615850e-47 |
| Msa0106540 | Msa1381030 | 0.804350 | 2.253062e-49 | -8.615850e-47 |
| Msa0108880 | Msa1381030 | 0.816478 | 5.417123e-52 | -8.615850e-47 |
| Msa1349690 | Msa1381030 | 0.806881 | 6.631391e-50 | -8.615850e-47 |
| Msa1358290 | Msa1381030 | 0.804308 | 2.298700e-49 | -8.615850e-47 |
| Msa1364680 | Msa1381030 | 0.804222 | 2.396120e-49 | -8.615850e-47 |
| Msa1381010 | Msa1381030 | 0.832932 | 7.125929e-56 | -8.615850e-47 |
| Msa1381030 | Msa1384150 | 0.807903 | 4.027314e-50 | -8.615850e-47 |
| Msa1381030 | Msa1385260 | 0.800694 | 1.278166e-48 | -8.615850e-47 |
| Msa1381030 | Msa1405830 | 0.805687 | 1.183578e-49 | -8.615850e-47 |
| Msa1381030 | Msa1406720 | 0.832828 | 7.566968e-56 | -8.615850e-47 |
| Msa1381030 | Msa1407810 | 0.823681 | 1.215273e-53 | -8.615850e-47 |
| Msa1381030 | Msa1409410 | 0.810587 | 1.070088e-50 | -8.615850e-47 |
| Msa1381030 | Msa1410160 | 0.832637 | 8.436672e-56 | -8.615850e-47 |
| Msa1381030 | Msa1415540 | 0.818431 | 1.967556e-52 | -8.615850e-47 |
| Msa1381030 | Msa1417370 | 0.820592 | 6.321774e-53 | -8.615850e-47 |
| Msa1381030 | Msa1433360 | 0.825820 | 3.806148e-54 | -8.615850e-47 |
| Msa1381030 | Msa1433570 | 0.809044 | 2.298599e-50 | -8.615850e-47 |
| Msa1381030 | Msa1437780 | 0.824627 | 7.285602e-54 | -8.615850e-47 |
| Msa1381030 | Msa1438510 | 0.810514 | 1.109974e-50 | -8.615850e-47 |
| Msa1381030 | Msa1440430 | 0.994888 | 4.327566e-211 | -8.615850e-47 |
| Msa1381030 | Msa1445530 | 0.805124 | 1.553047e-49 | -8.615850e-47 |
| Msa1381030 | Msa1447100 | 0.806307 | 8.764071e-50 | -8.615850e-47 |
| Msa1381030 | Msa1449900 | 0.800620 | 1.323001e-48 | -8.615850e-47 |
| Msa1381030 | Msa1450190 | 0.818722 | 1.690090e-52 | -8.615850e-47 |
| Msa1381030 | Msa1451820 | 0.800082 | 1.702736e-48 | -8.615850e-47 |
| Msa1381030 | Msa1455640 | 0.812106 | 5.009329e-51 | -8.615850e-47 |
| Msa0607800 | Msa1381030 | 0.825572 | 4.357103e-54 | -8.615850e-47 |
| Msa0610700 | Msa1381030 | -0.806225 | 9.122608e-50 | -8.615850e-47 |
| Msa0619710 | Msa1381030 | 0.819931 | 8.959617e-53 | -8.615850e-47 |
| Msa0625620 | Msa1381030 | 0.801663 | 8.098495e-49 | -8.615850e-47 |
| Msa0646010 | Msa1381030 | 0.820767 | 5.764760e-53 | -8.615850e-47 |
| Msa0646430 | Msa1381030 | 0.822052 | 2.911312e-53 | -8.615850e-47 |
| Msa0648040 | Msa1381030 | 0.825212 | 5.302341e-54 | -8.615850e-47 |
| Msa0655700 | Msa1381030 | 0.801349 | 9.391318e-49 | -8.615850e-47 |
| Msa0657710 | Msa1381030 | 0.820899 | 5.375944e-53 | -8.615850e-47 |
| Msa0657720 | Msa1381030 | 0.807136 | 5.858039e-50 | -8.615850e-47 |
| Msa0660090 | Msa1381030 | 0.811386 | 7.185216e-51 | -8.615850e-47 |
| Msa0686040 | Msa1381030 | 0.812788 | 3.554424e-51 | -8.615850e-47 |
| Msa0687090 | Msa1381030 | 0.831095 | 2.026662e-55 | -8.615850e-47 |
| Msa0690740 | Msa1381030 | 0.820947 | 5.239489e-53 | -8.615850e-47 |
| Msa0695560 | Msa1381030 | 0.819596 | 1.068802e-52 | -8.615850e-47 |
| Msa0702790 | Msa1381030 | 0.800757 | 1.241024e-48 | -8.615850e-47 |
| Msa0702800 | Msa1381030 | 0.819036 | 1.434247e-52 | -8.615850e-47 |
| Msa0706150 | Msa1381030 | 0.832750 | 7.909567e-56 | -8.615850e-47 |
| Msa0722890 | Msa1381030 | 0.828186 | 1.034128e-54 | -8.615850e-47 |
| Msa0723090 | Msa1381030 | 0.821597 | 3.710095e-53 | -8.615850e-47 |
| Msa0735010 | Msa1381030 | 0.807836 | 4.160031e-50 | -8.615850e-47 |
| Msa0738700 | Msa1381030 | 0.833179 | 6.186616e-56 | -8.615850e-47 |
| Msa0745140 | Msa1381030 | 0.807428 | 5.079969e-50 | -8.615850e-47 |
| Msa0776640 | Msa1381030 | 0.804851 | 1.771114e-49 | -8.615850e-47 |
| Msa0780910 | Msa1381030 | 0.812346 | 4.440465e-51 | -8.615850e-47 |
| Msa0821160 | Msa1381030 | 0.806470 | 8.098264e-50 | -8.615850e-47 |
| Msa0825920 | Msa1381030 | 0.806780 | 6.966611e-50 | -8.615850e-47 |
| Msa0828960 | Msa1381030 | 0.818138 | 2.292261e-52 | -8.615850e-47 |
| Msa0837460 | Msa1381030 | 0.803544 | 3.313233e-49 | -8.615850e-47 |
| Msa0838620 | Msa1381030 | -0.803190 | 3.924268e-49 | -8.615850e-47 |
| Msa0120790 | Msa1381030 | 0.806266 | 8.940204e-50 | -8.615850e-47 |
| Msa0128230 | Msa1381030 | 0.800765 | 1.236257e-48 | -8.615850e-47 |
| Msa0132700 | Msa1381030 | 0.865321 | 6.428756e-65 | -8.615850e-47 |
| Msa0139500 | Msa1381030 | 0.813397 | 2.613546e-51 | -8.615850e-47 |
| Msa0140380 | Msa1381030 | 0.802399 | 5.714692e-49 | -8.615850e-47 |
| Msa0161930 | Msa1381030 | 0.838025 | 3.674669e-57 | -8.615850e-47 |
| Msa0181880 | Msa1381030 | 0.840921 | 6.496048e-58 | -8.615850e-47 |
| Msa0183710 | Msa1381030 | 0.806663 | 7.375290e-50 | -8.615850e-47 |
| Msa0189720 | Msa1381030 | 0.826510 | 2.607359e-54 | -8.615850e-47 |
| Msa0205210 | Msa1381030 | 0.811844 | 5.713197e-51 | -8.615850e-47 |
| Msa0206370 | Msa1381030 | 0.847733 | 9.591878e-60 | -8.615850e-47 |
| Msa0232100 | Msa1381030 | 0.835212 | 1.914146e-56 | -8.615850e-47 |
| Msa1228580 | Msa1381030 | 0.804701 | 1.903971e-49 | -8.615850e-47 |
| Msa1253520 | Msa1381030 | 0.810342 | 1.208893e-50 | -8.615850e-47 |
| Msa1254540 | Msa1381030 | 0.823571 | 1.289688e-53 | -8.615850e-47 |
| Msa1255710 | Msa1381030 | 0.807939 | 3.956153e-50 | -8.615850e-47 |
| Msa1257200 | Msa1381030 | 0.808931 | 2.430025e-50 | -8.615850e-47 |
| Msa1261160 | Msa1381030 | 0.830221 | 3.317625e-55 | -8.615850e-47 |
| Msa1263740 | Msa1381030 | 0.818318 | 2.087235e-52 | -8.615850e-47 |
| Msa1263780 | Msa1381030 | 0.832623 | 8.504161e-56 | -8.615850e-47 |
| Msa1283930 | Msa1381030 | 0.803941 | 2.740787e-49 | -8.615850e-47 |
| Msa1290380 | Msa1381030 | 0.810947 | 8.947297e-51 | -8.615850e-47 |
| Msa1290440 | Msa1381030 | 0.807433 | 5.066769e-50 | -8.615850e-47 |
| Msa1294460 | Msa1381030 | 0.810409 | 1.169353e-50 | -8.615850e-47 |
| Msa1294790 | Msa1381030 | 0.814040 | 1.885795e-51 | -8.615850e-47 |
| Msa1296860 | Msa1381030 | 0.824620 | 7.314470e-54 | -8.615850e-47 |
| Msa1300420 | Msa1381030 | 0.827971 | 1.165104e-54 | -8.615850e-47 |
| Msa1306820 | Msa1381030 | 0.816003 | 6.919409e-52 | -8.615850e-47 |
| Msa1308850 | Msa1381030 | 0.819113 | 1.377371e-52 | -8.615850e-47 |
| Msa1322960 | Msa1381030 | 0.804622 | 1.977241e-49 | -8.615850e-47 |
| Msa1327800 | Msa1381030 | 0.819075 | 1.405087e-52 | -8.615850e-47 |
| Msa1338540 | Msa1381030 | 0.820820 | 5.604555e-53 | -8.615850e-47 |
| Msa1339990 | Msa1381030 | 0.801266 | 9.765721e-49 | -8.615850e-47 |
| Msa0383000 | Msa1381030 | 0.816159 | 6.385879e-52 | -8.615850e-47 |
| Msa0386540 | Msa1381030 | 0.941980 | 1.611731e-101 | -8.615850e-47 |
| Msa0386560 | Msa1381030 | 0.836755 | 7.768005e-57 | -8.615850e-47 |
| Msa0387930 | Msa1381030 | 0.810364 | 1.195920e-50 | -8.615850e-47 |
| Msa0401060 | Msa1381030 | 0.803102 | 4.092067e-49 | -8.615850e-47 |
| Msa0401970 | Msa1381030 | 0.857351 | 1.731622e-62 | -8.615850e-47 |
| Msa0433150 | Msa1381030 | 0.808305 | 3.306334e-50 | -8.615850e-47 |
| Msa0437480 | Msa1381030 | 0.870255 | 1.675709e-66 | -8.615850e-47 |
| Msa0437520 | Msa1381030 | 0.806381 | 8.455724e-50 | -8.615850e-47 |
| Msa0440350 | Msa1381030 | 0.860656 | 1.774423e-63 | -8.615850e-47 |
| Msa0455970 | Msa1381030 | 0.807678 | 4.494812e-50 | -8.615850e-47 |
| Msa0457570 | Msa1381030 | 0.829833 | 4.124938e-55 | -8.615850e-47 |
| Msa0466520 | Msa1381030 | 0.832286 | 1.030919e-55 | -8.615850e-47 |
| Msa0471000 | Msa1381030 | 0.811118 | 8.213639e-51 | -8.615850e-47 |
| Msa0481670 | Msa1381030 | 0.846748 | 1.787469e-59 | -8.615850e-47 |
| Msa1029820 | Msa1381030 | 0.827779 | 1.295763e-54 | -8.615850e-47 |
| Msa1031410 | Msa1381030 | 0.829492 | 4.994533e-55 | -8.615850e-47 |
| Msa1041060 | Msa1381030 | 0.808489 | 3.020742e-50 | -8.615850e-47 |
| Msa1042190 | Msa1381030 | 0.800812 | 1.208841e-48 | -8.615850e-47 |
| Msa1042300 | Msa1381030 | 0.812949 | 3.277179e-51 | -8.615850e-47 |
| Msa1044250 | Msa1381030 | 0.808797 | 2.595356e-50 | -8.615850e-47 |
| Msa1068730 | Msa1381030 | 0.802178 | 6.346815e-49 | -8.615850e-47 |
| Msa1068940 | Msa1381030 | 0.834395 | 3.072759e-56 | -8.615850e-47 |
| Msa1068960 | Msa1381030 | 0.824690 | 7.040481e-54 | -8.615850e-47 |
| Msa1081690 | Msa1381030 | 0.808977 | 2.374991e-50 | -8.615850e-47 |
| Msa1088320 | Msa1381030 | 0.812084 | 5.065124e-51 | -8.615850e-47 |
| Msa0256980 | Msa1381030 | 0.816502 | 5.350957e-52 | -8.615850e-47 |
| Msa0262750 | Msa1381030 | 0.815815 | 7.618531e-52 | -8.615850e-47 |
| Msa0284800 | Msa1381030 | 0.820736 | 5.857857e-53 | -8.615850e-47 |
| Msa0296300 | Msa1381030 | 0.813746 | 2.189332e-51 | -8.615850e-47 |
| Msa0310130 | Msa1381030 | 0.804820 | 1.797609e-49 | -8.615850e-47 |
| Msa0324830 | Msa1381030 | 0.807712 | 4.419996e-50 | -8.615850e-47 |
| Msa0330520 | Msa1381030 | 0.804971 | 1.671804e-49 | -8.615850e-47 |
| Msa0336430 | Msa1381030 | 0.800824 | 1.202119e-48 | -8.615850e-47 |
| Msa0336460 | Msa1381030 | 0.828284 | 9.795683e-55 | -8.615850e-47 |
| Msa0354840 | Msa1381030 | 0.873247 | 1.704845e-67 | -8.615850e-47 |
| Msa1125250 | Msa1381030 | 0.810194 | 1.301061e-50 | -8.615850e-47 |
| Msa1127970 | Msa1381030 | 0.817164 | 3.801391e-52 | -8.615850e-47 |
| Msa1149910 | Msa1381030 | 0.820545 | 6.480881e-53 | -8.615850e-47 |
| Msa1156710 | Msa1381030 | 0.830249 | 3.265839e-55 | -8.615850e-47 |
| Msa1156730 | Msa1381030 | 0.816057 | 6.730073e-52 | -8.615850e-47 |
| Msa1166190 | Msa1381030 | 0.826388 | 2.788767e-54 | -8.615850e-47 |
| Msa1166290 | Msa1381030 | 0.826582 | 2.506806e-54 | -8.615850e-47 |
| Msa1167470 | Msa1381030 | 0.807427 | 5.082765e-50 | -8.615850e-47 |
| Msa1194240 | Msa1381030 | 0.817740 | 2.818796e-52 | -8.615850e-47 |
| Msa1194290 | Msa1381030 | 0.808857 | 2.520285e-50 | -8.615850e-47 |
| Msa1200500 | Msa1381030 | 0.816580 | 5.139669e-52 | -8.615850e-47 |
| Msa1206920 | Msa1381030 | 0.803321 | 3.685220e-49 | -8.615850e-47 |
| Msa0486460 | Msa1381030 | 0.830546 | 2.763500e-55 | -8.615850e-47 |
| Msa0504720 | Msa1381030 | 0.811140 | 8.125365e-51 | -8.615850e-47 |
| Msa0513080 | Msa1381030 | 0.814650 | 1.382914e-51 | -8.615850e-47 |
| Msa0523550 | Msa1381030 | 0.834381 | 3.096836e-56 | -8.615850e-47 |
| Msa0523570 | Msa1381030 | 0.934487 | 3.742776e-96 | -8.615850e-47 |
| Msa0528570 | Msa1381030 | 0.814055 | 1.871855e-51 | -8.615850e-47 |
| Msa0549960 | Msa1381030 | 0.814718 | 1.335813e-51 | -8.615850e-47 |
| Msa0553750 | Msa1381030 | 0.819105 | 1.383210e-52 | -8.615850e-47 |
| Msa0566280 | Msa1381030 | 0.804694 | 1.910458e-49 | -8.615850e-47 |
| Msa0567330 | Msa1381030 | 0.813193 | 2.896749e-51 | -8.615850e-47 |
| Msa0567570 | Msa1381030 | 0.816150 | 6.413006e-52 | -8.615850e-47 |
| Msa0570010 | Msa1381030 | 0.816528 | 5.279958e-52 | -8.615850e-47 |
| Msa0576320 | Msa1381030 | 0.803569 | 3.274863e-49 | -8.615850e-47 |
| Msa0577480 | Msa1381030 | 0.811955 | 5.402628e-51 | -8.615850e-47 |
| Msa0579070 | Msa1381030 | -0.800180 | 1.626685e-48 | -8.615850e-47 |
| Msa0859290 | Msa1381030 | 0.827345 | 1.647053e-54 | -8.615850e-47 |
| Msa0865420 | Msa1381030 | 0.808444 | 3.087790e-50 | -8.615850e-47 |
| Msa0880910 | Msa1381030 | 0.804762 | 1.848624e-49 | -8.615850e-47 |
| Msa0881310 | Msa1381030 | 0.819309 | 1.242716e-52 | -8.615850e-47 |
| Msa0967780 | Msa1381030 | 0.818062 | 2.384789e-52 | -8.615850e-47 |
| Msa0968180 | Msa1381030 | 0.834646 | 2.657918e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381030 | MtrunA17_Chr3g0144451 | 97.193 | 285 | 8 | 0 | 1 | 285 | 1 | 285 | 0.0 | 578 |
| Msa1381030 | MtrunA17_Chr3g0138231 | 83.916 | 286 | 35 | 2 | 1 | 285 | 1 | 276 | 1.53e-171 | 475 |
| Msa1381030 | MtrunA17_Chr4g0034821 | 67.568 | 296 | 85 | 2 | 1 | 285 | 6 | 301 | 4.84e-143 | 404 |
| Msa1381030 | MtrunA17_Chr3g0144421 | 46.128 | 297 | 131 | 4 | 7 | 275 | 7 | 302 | 1.81e-92 | 276 |
| Msa1381030 | MtrunA17_Chr3g0144391 | 47.032 | 219 | 113 | 1 | 57 | 275 | 290 | 505 | 1.65e-70 | 226 |
| Msa1381030 | MtrunA17_Chr3g0144411 | 46.575 | 219 | 114 | 1 | 57 | 275 | 323 | 538 | 9.09e-69 | 222 |
| Msa1381030 | MtrunA17_Chr4g0034731 | 46.119 | 219 | 113 | 4 | 59 | 275 | 217 | 432 | 2.57e-65 | 210 |
| Msa1381030 | MtrunA17_Chr4g0034451 | 41.463 | 246 | 138 | 4 | 39 | 281 | 290 | 532 | 3.17e-64 | 210 |
| Msa1381030 | MtrunA17_Chr4g0034721 | 46.903 | 226 | 115 | 4 | 59 | 282 | 361 | 583 | 2.76e-62 | 206 |
| Msa1381030 | MtrunA17_Chr4g0034691 | 40.074 | 272 | 148 | 5 | 16 | 282 | 454 | 715 | 2.13e-59 | 201 |
| Msa1381030 | MtrunA17_Chr1g0147271 | 43.750 | 224 | 121 | 4 | 54 | 276 | 166 | 385 | 3.27e-59 | 193 |
| Msa1381030 | MtrunA17_Chr6g0485051 | 45.455 | 209 | 108 | 4 | 71 | 276 | 1 | 206 | 2.86e-58 | 185 |
| Msa1381030 | MtrunA17_Chr3g0139431 | 42.291 | 227 | 123 | 5 | 53 | 276 | 101 | 322 | 9.46e-56 | 182 |
| Msa1381030 | MtrunA17_Chr1g0147301 | 41.964 | 224 | 124 | 5 | 55 | 276 | 66 | 285 | 3.53e-54 | 177 |
| Msa1381030 | MtrunA17_Chr1g0147331 | 40.625 | 224 | 126 | 5 | 54 | 276 | 108 | 325 | 1.43e-53 | 177 |
| Msa1381030 | MtrunA17_Chr1g0147291 | 41.704 | 223 | 122 | 5 | 55 | 276 | 52 | 267 | 3.38e-53 | 174 |
| Msa1381030 | MtrunA17_Chr1g0146631 | 40.179 | 224 | 127 | 5 | 54 | 276 | 108 | 325 | 1.27e-52 | 174 |
| Msa1381030 | MtrunA17_Chr1g0147321 | 41.364 | 220 | 121 | 5 | 55 | 273 | 23 | 235 | 3.49e-52 | 171 |
| Msa1381030 | MtrunA17_Chr1g0147311 | 41.071 | 224 | 126 | 5 | 55 | 276 | 137 | 356 | 2.28e-51 | 172 |
| Msa1381030 | MtrunA17_Chr1g0147261 | 40.090 | 222 | 127 | 4 | 55 | 276 | 85 | 300 | 4.43e-51 | 169 |
| Msa1381030 | MtrunA17_Chr1g0147251 | 39.640 | 222 | 125 | 4 | 55 | 276 | 31 | 243 | 1.11e-49 | 164 |
| Msa1381030 | MtrunA17_Chr1g0147241 | 38.839 | 224 | 131 | 3 | 53 | 276 | 96 | 313 | 7.62e-49 | 164 |
| Msa1381030 | MtrunA17_Chr8g0365361 | 31.674 | 221 | 138 | 6 | 59 | 274 | 181 | 393 | 8.57e-30 | 116 |
| Msa1381030 | MtrunA17_Chr5g0413591 | 32.432 | 222 | 135 | 7 | 59 | 274 | 415 | 627 | 7.40e-29 | 115 |
| Msa1381030 | MtrunA17_Chr8g0365401 | 31.982 | 222 | 136 | 7 | 59 | 274 | 412 | 624 | 2.31e-27 | 111 |
| Msa1381030 | MtrunA17_Chr3g0117791 | 31.963 | 219 | 140 | 6 | 59 | 274 | 413 | 625 | 1.46e-25 | 105 |
| Msa1381030 | MtrunA17_Chr4g0034051 | 54.430 | 79 | 34 | 2 | 199 | 275 | 1 | 79 | 3.20e-25 | 96.3 |
| Msa1381030 | MtrunA17_Chr8g0365381 | 30.455 | 220 | 140 | 5 | 59 | 273 | 429 | 640 | 7.75e-25 | 103 |
| Msa1381030 | MtrunA17_Chr4g0076231 | 32.903 | 155 | 99 | 4 | 121 | 273 | 5 | 156 | 1.16e-24 | 97.1 |
| Msa1381030 | MtrunA17_Chr8g0355871 | 38.514 | 148 | 81 | 5 | 128 | 275 | 85 | 222 | 2.54e-20 | 87.4 |
| Msa1381030 | MtrunA17_Chr5g0412981 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.54e-19 | 87.0 |
| Msa1381030 | MtrunA17_Chr5g0412981 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 6.25e-14 | 71.2 |
| Msa1381030 | MtrunA17_Chr5g0412991 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.83e-19 | 87.0 |
| Msa1381030 | MtrunA17_Chr5g0412991 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 1.88e-13 | 70.1 |
| Msa1381030 | MtrunA17_Chr8g0355311 | 35.135 | 148 | 86 | 5 | 128 | 275 | 53 | 190 | 2.99e-19 | 83.6 |
| Msa1381030 | MtrunA17_Chr8g0355321 | 37.500 | 144 | 74 | 5 | 135 | 275 | 172 | 302 | 8.10e-18 | 81.6 |
| Msa1381030 | MtrunA17_Chr8g0355861 | 34.459 | 148 | 87 | 4 | 128 | 275 | 123 | 260 | 1.12e-17 | 80.9 |
| Msa1381030 | MtrunA17_Chr5g0412951 | 26.190 | 210 | 150 | 3 | 65 | 273 | 2 | 207 | 2.62e-17 | 78.6 |
| Msa1381030 | MtrunA17_Chr2g0318871 | 34.228 | 149 | 88 | 5 | 129 | 277 | 123 | 261 | 1.76e-16 | 77.4 |
| Msa1381030 | MtrunA17_Chr2g0318901 | 34.722 | 144 | 84 | 5 | 134 | 277 | 128 | 261 | 2.77e-16 | 77.0 |
| Msa1381030 | MtrunA17_Chr8g0355841 | 34.043 | 141 | 83 | 4 | 135 | 275 | 379 | 509 | 1.45e-15 | 76.6 |
| Msa1381030 | MtrunA17_Chr8g0355331 | 34.722 | 144 | 78 | 5 | 135 | 275 | 291 | 421 | 2.53e-15 | 75.5 |
| Msa1381030 | MtrunA17_Chr8g0371951 | 44.737 | 76 | 37 | 4 | 192 | 264 | 14 | 87 | 1.80e-14 | 67.4 |
| Msa1381030 | MtrunA17_Chr8g0355831 | 32.432 | 148 | 90 | 4 | 128 | 275 | 214 | 351 | 3.24e-14 | 72.0 |
| Msa1381030 | MtrunA17_Chr1g0168781 | 32.215 | 149 | 92 | 5 | 128 | 276 | 121 | 260 | 3.86e-14 | 70.9 |
| Msa1381030 | MtrunA17_Chr2g0318931 | 33.103 | 145 | 85 | 6 | 135 | 277 | 138 | 272 | 2.77e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381030 | AT1G49320.1 | 38.790 | 281 | 160 | 5 | 1 | 276 | 7 | 280 | 7.38e-67 | 210 |
| Msa1381030 | AT5G25610.1 | 42.152 | 223 | 124 | 5 | 53 | 273 | 170 | 389 | 5.57e-52 | 175 |
| Msa1381030 | AT1G60390.1 | 31.081 | 222 | 136 | 6 | 59 | 273 | 409 | 620 | 4.36e-26 | 107 |
| Msa1381030 | AT1G70370.2 | 30.045 | 223 | 139 | 5 | 59 | 274 | 411 | 623 | 7.83e-24 | 101 |
| Msa1381030 | AT1G70370.1 | 30.045 | 223 | 139 | 5 | 59 | 274 | 411 | 623 | 7.83e-24 | 101 |
| Msa1381030 | AT1G23760.1 | 28.767 | 219 | 147 | 6 | 59 | 274 | 407 | 619 | 1.47e-22 | 97.8 |
Find 70 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTTGTGATTTCAATTT+AGG | 0.099086 | tig0020421:-66267 | None:intergenic |
| CATGTTTCATTTCAAGTTCT+TGG | 0.201295 | tig0020421:+66183 | Msa1381030:CDS |
| ATTCTTCACTTTGAAAGATT+TGG | 0.265422 | tig0020421:+65618 | Msa1381030:CDS |
| AACCTTGTGATTTCAATTTA+GGG | 0.289344 | tig0020421:-66266 | None:intergenic |
| TTGAAAAGTAACACTTGATT+TGG | 0.297099 | tig0020421:-65953 | None:intergenic |
| GAATTTACACAAAACATTCT+TGG | 0.298406 | tig0020421:+65889 | Msa1381030:CDS |
| AAGTGATTCAGCTTCTTCTT+TGG | 0.321679 | tig0020421:-65707 | None:intergenic |
| TCAAATGGGTGGTTAGATAT+AGG | 0.325253 | tig0020421:-66459 | None:intergenic |
| AGTGATTCAGCTTCTTCTTT+GGG | 0.342654 | tig0020421:-65706 | None:intergenic |
| CTTCTTTGGGCCATAACTTA+GGG | 0.345605 | tig0020421:-65693 | None:intergenic |
| GAACTTAACCTCTCCTTTGA+TGG | 0.356006 | tig0020421:-65839 | None:intergenic |
| GTGTGACAAGCCACCATCTT+TGG | 0.368463 | tig0020421:-66015 | None:intergenic |
| GCATTTCATTATGTTCTCTT+GGG | 0.369117 | tig0020421:-65255 | None:intergenic |
| TCCCAGCGGACAATTACATT+TGG | 0.373004 | tig0020421:+66241 | Msa1381030:CDS |
| TCTTCTTTGGGCCATAACTT+AGG | 0.375370 | tig0020421:-65694 | None:intergenic |
| AGCATTTCATTATGTTCTCT+TGG | 0.376189 | tig0020421:-65256 | None:intergenic |
| GAACATAATGAAATGCTAAC+TGG | 0.379487 | tig0020421:+65262 | Msa1381030:five_prime_UTR |
| GAAGTTGATGGGTCTCTCTT+AGG | 0.380142 | tig0020421:-65670 | None:intergenic |
| CAAATGGGTGGTTAGATATA+GGG | 0.382078 | tig0020421:-66458 | None:intergenic |
| TTTGTGTTCATGTGCTTCAA+TGG | 0.387687 | tig0020421:+66341 | Msa1381030:three_prime_UTR |
| CCCAGCGGACAATTACATTT+GGG | 0.389028 | tig0020421:+66242 | Msa1381030:CDS |
| GGCTATGGTGGTTTGTCACT+TGG | 0.403171 | tig0020421:+66137 | Msa1381030:CDS |
| TCATCTACTAGTAATCCTTC+TGG | 0.409210 | tig0020421:+65398 | Msa1381030:CDS |
| TTTCAACCAATTCCCTAGCT+TGG | 0.420546 | tig0020421:-65516 | None:intergenic |
| CATAACTTAGGGGAAGTTGA+TGG | 0.430077 | tig0020421:-65682 | None:intergenic |
| ACTTTGAAAGATTTGGAAGT+AGG | 0.431659 | tig0020421:+65625 | Msa1381030:CDS |
| ATAGTCAAGAAAGTGAGAAT+AGG | 0.435139 | tig0020421:+66070 | Msa1381030:CDS |
| TAAGGTGCTTTCCATTGCTA+TGG | 0.435162 | tig0020421:-65797 | None:intergenic |
| TGGAGATAAGGTTGAGGCTA+TGG | 0.442985 | tig0020421:+66122 | Msa1381030:CDS |
| GAGAGTTGGTTTGATGAGAA+AGG | 0.452149 | tig0020421:-65730 | None:intergenic |
| GACTCATATGATTATGATGA+TGG | 0.452194 | tig0020421:-65570 | None:intergenic |
| TGGAGACCAAGCTAGGGAAT+TGG | 0.452353 | tig0020421:+65510 | Msa1381030:CDS |
| CTTTCCATTGCTATGGCTTG+TGG | 0.462619 | tig0020421:-65790 | None:intergenic |
| TGACACACAGAAGAGCTTCC+TGG | 0.469514 | tig0020421:-66213 | None:intergenic |
| CATCAACTTCCCCTAAGTTA+TGG | 0.470154 | tig0020421:+65683 | Msa1381030:CDS |
| TGTGCAAAGTTGCATAAGCT+TGG | 0.472166 | tig0020421:-65927 | None:intergenic |
| CAAGTTCTTGGTGTCACACC+AGG | 0.473983 | tig0020421:+66195 | Msa1381030:CDS |
| TAATATTGATCCTTCACTAA+TGG | 0.474162 | tig0020421:+65594 | Msa1381030:CDS |
| CCCAAATGTAATTGTCCGCT+GGG | 0.478272 | tig0020421:-66242 | None:intergenic |
| TAGTCAAGAAAGTGAGAATA+GGG | 0.482578 | tig0020421:+66071 | Msa1381030:CDS |
| TTTCTCATGGAGACCAAGCT+AGG | 0.482788 | tig0020421:+65503 | Msa1381030:CDS |
| TCACTTGGATACATCACAAT+GGG | 0.486976 | tig0020421:+66152 | Msa1381030:CDS |
| GGAAGAGAACAAGATTGAAA+AGG | 0.490541 | tig0020421:-65218 | None:intergenic |
| AACTCTTCACAGTTATCGCT+TGG | 0.503554 | tig0020421:-65321 | None:intergenic |
| ACCCAAATGTAATTGTCCGC+TGG | 0.506688 | tig0020421:-66243 | None:intergenic |
| CAACTTTGAAAGTAGAAACA+TGG | 0.510079 | tig0020421:+65344 | Msa1381030:exon |
| AACTTAACCTCTCCTTTGAT+GGG | 0.514268 | tig0020421:-65838 | None:intergenic |
| CACTATAGTAGAAATTATGA+TGG | 0.530352 | tig0020421:+65981 | Msa1381030:CDS |
| AGATAAGGTTGAGGCTATGG+TGG | 0.538336 | tig0020421:+66125 | Msa1381030:CDS |
| AAATTCTTCTCTTTCTCTCG+AGG | 0.539084 | tig0020421:+65763 | Msa1381030:CDS |
| TTCAAGCATAGATTCTAAAG+AGG | 0.545516 | tig0020421:-65869 | None:intergenic |
| ATAACTTAGGGGAAGTTGAT+GGG | 0.567226 | tig0020421:-65681 | None:intergenic |
| TTACTAGTAGATGAAGAAAG+AGG | 0.580251 | tig0020421:-65389 | None:intergenic |
| GTGAAGAATACCATTAGTGA+AGG | 0.584434 | tig0020421:-65604 | None:intergenic |
| TGTGAAAGCAAACCCATCAA+AGG | 0.587824 | tig0020421:+65826 | Msa1381030:CDS |
| CAATCTTGTTCTCTTCCTCG+AGG | 0.589849 | tig0020421:+65224 | Msa1381030:five_prime_UTR |
| TTCTCATGGAGACCAAGCTA+GGG | 0.591351 | tig0020421:+65504 | Msa1381030:CDS |
| AACTTTGAAAGTAGAAACAT+GGG | 0.596266 | tig0020421:+65345 | Msa1381030:exon |
| GGAAATTCTAGCTCCAAAGA+TGG | 0.597283 | tig0020421:+66002 | Msa1381030:CDS |
| GTCCCTAAATTGAAATCACA+AGG | 0.602399 | tig0020421:+66264 | Msa1381030:CDS |
| TTCTTTGGGCCATAACTTAG+GGG | 0.604761 | tig0020421:-65692 | None:intergenic |
| TGAGAATGGAGATAAGGTTG+AGG | 0.616111 | tig0020421:+66116 | Msa1381030:CDS |
| TTCACCACAAGCCATAGCAA+TGG | 0.617486 | tig0020421:+65786 | Msa1381030:CDS |
| TTGGTTAGATGACTAGAATG+AGG | 0.630874 | tig0020421:-65302 | None:intergenic |
| GTCACTTGGATACATCACAA+TGG | 0.635200 | tig0020421:+66151 | Msa1381030:CDS |
| ACTTGAAATGAAACATGACT+AGG | 0.655390 | tig0020421:-66177 | None:intergenic |
| AATTCTAGCTCCAAAGATGG+TGG | 0.662511 | tig0020421:+66005 | Msa1381030:CDS |
| AAGCAAACCCATCAAAGGAG+AGG | 0.675310 | tig0020421:+65831 | Msa1381030:CDS |
| GTGGTTAGATATAGGGACGG+AGG | 0.690895 | tig0020421:-66451 | None:intergenic |
| TGGGTGGTTAGATATAGGGA+CGG | 0.715649 | tig0020421:-66454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGGAATAAATTTTATATCT+TGG | + | tig0020421:65364-65383 | Msa1381030:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | - | tig0020421:65416-65435 | None:intergenic | 20.0% |
| !!! | TGGGAATAAATTTTATATCT+TGG | + | tig0020421:65364-65383 | Msa1381030:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | - | tig0020421:65416-65435 | None:intergenic | 20.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | + | tig0020421:65345-65364 | Msa1381030:exon | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | + | tig0020421:65490-65509 | Msa1381030:intron | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | + | tig0020421:65594-65613 | Msa1381030:CDS | 25.0% |
| !! | ATTCTTCACTTTGAAAGATT+TGG | + | tig0020421:65618-65637 | Msa1381030:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | - | tig0020421:65747-65766 | None:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | - | tig0020421:65818-65837 | None:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | + | tig0020421:65889-65908 | Msa1381030:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | - | tig0020421:65956-65975 | None:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | + | tig0020421:65981-66000 | Msa1381030:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | - | tig0020421:66045-66064 | None:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | - | tig0020421:66051-66070 | None:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | + | tig0020421:66089-66108 | Msa1381030:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | + | tig0020421:66090-66109 | Msa1381030:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | - | tig0020421:66269-66288 | None:intergenic | 25.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | + | tig0020421:65345-65364 | Msa1381030:exon | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | + | tig0020421:65490-65509 | Msa1381030:intron | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | + | tig0020421:65594-65613 | Msa1381030:CDS | 25.0% |
| !! | ATTCTTCACTTTGAAAGATT+TGG | + | tig0020421:65618-65637 | Msa1381030:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | - | tig0020421:65747-65766 | None:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | - | tig0020421:65818-65837 | None:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | + | tig0020421:65889-65908 | Msa1381030:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | - | tig0020421:65956-65975 | None:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | + | tig0020421:65981-66000 | Msa1381030:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | - | tig0020421:66045-66064 | None:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | - | tig0020421:66051-66070 | None:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | + | tig0020421:66089-66108 | Msa1381030:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | + | tig0020421:66090-66109 | Msa1381030:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | - | tig0020421:66269-66288 | None:intergenic | 25.0% |
| GCATTTCATTATGTTCTCTT+GGG | - | tig0020421:65258-65277 | None:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | - | tig0020421:65259-65278 | None:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | + | tig0020421:65262-65281 | Msa1381030:five_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | + | tig0020421:65344-65363 | Msa1381030:exon | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | - | tig0020421:65392-65411 | None:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | - | tig0020421:65573-65592 | None:intergenic | 30.0% | |
| ! | ACTTTGAAAGATTTGGAAGT+AGG | + | tig0020421:65625-65644 | Msa1381030:CDS | 30.0% |
| ! | TTCAAGCATAGATTCTAAAG+AGG | - | tig0020421:65872-65891 | None:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | + | tig0020421:66070-66089 | Msa1381030:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | + | tig0020421:66071-66090 | Msa1381030:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | + | tig0020421:66091-66110 | Msa1381030:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | + | tig0020421:66092-66111 | Msa1381030:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | + | tig0020421:66093-66112 | Msa1381030:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | - | tig0020421:66180-66199 | None:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | + | tig0020421:66183-66202 | Msa1381030:CDS | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | - | tig0020421:66270-66289 | None:intergenic | 30.0% | |
| GCATTTCATTATGTTCTCTT+GGG | - | tig0020421:65258-65277 | None:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | - | tig0020421:65259-65278 | None:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | + | tig0020421:65262-65281 | Msa1381030:five_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | + | tig0020421:65344-65363 | Msa1381030:exon | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | - | tig0020421:65392-65411 | None:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | - | tig0020421:65573-65592 | None:intergenic | 30.0% | |
| ! | ACTTTGAAAGATTTGGAAGT+AGG | + | tig0020421:65625-65644 | Msa1381030:CDS | 30.0% |
| ! | TTCAAGCATAGATTCTAAAG+AGG | - | tig0020421:65872-65891 | None:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | + | tig0020421:66070-66089 | Msa1381030:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | + | tig0020421:66071-66090 | Msa1381030:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | + | tig0020421:66091-66110 | Msa1381030:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | + | tig0020421:66092-66111 | Msa1381030:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | + | tig0020421:66093-66112 | Msa1381030:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | - | tig0020421:66180-66199 | None:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | + | tig0020421:66183-66202 | Msa1381030:CDS | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | - | tig0020421:66270-66289 | None:intergenic | 30.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | - | tig0020421:65221-65240 | None:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | - | tig0020421:65305-65324 | None:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | + | tig0020421:65398-65417 | Msa1381030:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | - | tig0020421:65607-65626 | None:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | - | tig0020421:65684-65703 | None:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | - | tig0020421:65709-65728 | None:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | - | tig0020421:65710-65729 | None:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | + | tig0020421:65763-65782 | Msa1381030:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | - | tig0020421:65841-65860 | None:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | + | tig0020421:66152-66171 | Msa1381030:CDS | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | + | tig0020421:66264-66283 | Msa1381030:CDS | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | + | tig0020421:66341-66360 | Msa1381030:three_prime_UTR | 35.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | - | tig0020421:65221-65240 | None:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | - | tig0020421:65305-65324 | None:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | + | tig0020421:65398-65417 | Msa1381030:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | - | tig0020421:65607-65626 | None:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | - | tig0020421:65684-65703 | None:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | - | tig0020421:65709-65728 | None:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | - | tig0020421:65710-65729 | None:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | + | tig0020421:65763-65782 | Msa1381030:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | - | tig0020421:65841-65860 | None:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | + | tig0020421:66152-66171 | Msa1381030:CDS | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | + | tig0020421:66264-66283 | Msa1381030:CDS | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | + | tig0020421:66341-66360 | Msa1381030:three_prime_UTR | 35.0% | |
| AACTCTTCACAGTTATCGCT+TGG | - | tig0020421:65324-65343 | None:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | - | tig0020421:65519-65538 | None:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | - | tig0020421:65685-65704 | None:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | + | tig0020421:65683-65702 | Msa1381030:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | - | tig0020421:65695-65714 | None:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | - | tig0020421:65696-65715 | None:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | - | tig0020421:65697-65716 | None:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | - | tig0020421:65733-65752 | None:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | - | tig0020421:65800-65819 | None:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | + | tig0020421:65826-65845 | Msa1381030:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | - | tig0020421:65842-65861 | None:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | - | tig0020421:65930-65949 | None:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | + | tig0020421:66002-66021 | Msa1381030:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | + | tig0020421:66005-66024 | Msa1381030:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | + | tig0020421:66116-66135 | Msa1381030:CDS | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | + | tig0020421:66151-66170 | Msa1381030:CDS | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | + | tig0020421:66227-66246 | Msa1381030:CDS | 40.0% |
| AACTCTTCACAGTTATCGCT+TGG | - | tig0020421:65324-65343 | None:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | - | tig0020421:65519-65538 | None:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | - | tig0020421:65685-65704 | None:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | + | tig0020421:65683-65702 | Msa1381030:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | - | tig0020421:65695-65714 | None:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | - | tig0020421:65696-65715 | None:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | - | tig0020421:65697-65716 | None:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | - | tig0020421:65733-65752 | None:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | - | tig0020421:65800-65819 | None:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | + | tig0020421:65826-65845 | Msa1381030:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | - | tig0020421:65842-65861 | None:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | - | tig0020421:65930-65949 | None:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | + | tig0020421:66002-66021 | Msa1381030:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | + | tig0020421:66005-66024 | Msa1381030:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | + | tig0020421:66116-66135 | Msa1381030:CDS | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | + | tig0020421:66151-66170 | Msa1381030:CDS | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | + | tig0020421:66227-66246 | Msa1381030:CDS | 40.0% |
| CAATCTTGTTCTCTTCCTCG+AGG | + | tig0020421:65224-65243 | Msa1381030:five_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | + | tig0020421:65503-65522 | Msa1381030:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | + | tig0020421:65504-65523 | Msa1381030:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | - | tig0020421:65673-65692 | None:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | + | tig0020421:65786-65805 | Msa1381030:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | - | tig0020421:65793-65812 | None:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | + | tig0020421:65831-65850 | Msa1381030:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | + | tig0020421:66102-66121 | Msa1381030:CDS | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | + | tig0020421:66122-66141 | Msa1381030:CDS | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | + | tig0020421:66125-66144 | Msa1381030:CDS | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | + | tig0020421:66241-66260 | Msa1381030:CDS | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | - | tig0020421:66245-66264 | None:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | + | tig0020421:66242-66261 | Msa1381030:CDS | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | - | tig0020421:66246-66265 | None:intergenic | 45.0% | |
| CAATCTTGTTCTCTTCCTCG+AGG | + | tig0020421:65224-65243 | Msa1381030:five_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | + | tig0020421:65503-65522 | Msa1381030:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | + | tig0020421:65504-65523 | Msa1381030:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | - | tig0020421:65673-65692 | None:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | + | tig0020421:65786-65805 | Msa1381030:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | - | tig0020421:65793-65812 | None:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | + | tig0020421:65831-65850 | Msa1381030:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | + | tig0020421:66102-66121 | Msa1381030:CDS | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | + | tig0020421:66122-66141 | Msa1381030:CDS | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | + | tig0020421:66125-66144 | Msa1381030:CDS | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | + | tig0020421:66241-66260 | Msa1381030:CDS | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | - | tig0020421:66245-66264 | None:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | + | tig0020421:66242-66261 | Msa1381030:CDS | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | - | tig0020421:66246-66265 | None:intergenic | 45.0% | |
| !!! | GATTATTATAAAATTTTATT+TGG | - | tig0020421:65177-65196 | None:intergenic | 5.0% |
| !!! | GATTATTATAAAATTTTATT+TGG | - | tig0020421:65177-65196 | None:intergenic | 5.0% |
| ! | TCTTGGGCACATTTTCCTCG+AGG | - | tig0020421:65242-65261 | None:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | + | tig0020421:65510-65529 | Msa1381030:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | - | tig0020421:66018-66037 | None:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | + | tig0020421:66137-66156 | Msa1381030:CDS | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | + | tig0020421:66195-66214 | Msa1381030:CDS | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | - | tig0020421:66216-66235 | None:intergenic | 50.0% | |
| ! | TCTTGGGCACATTTTCCTCG+AGG | - | tig0020421:65242-65261 | None:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | + | tig0020421:65510-65529 | Msa1381030:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | - | tig0020421:66018-66037 | None:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | + | tig0020421:66137-66156 | Msa1381030:CDS | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | + | tig0020421:66195-66214 | Msa1381030:CDS | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | - | tig0020421:66216-66235 | None:intergenic | 50.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | + | tig0020421:66110-66129 | Msa1381030:CDS | 55.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | + | tig0020421:66110-66129 | Msa1381030:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020421 | gene | 65151 | 66468 | 65151 | ID=Msa1381030;Name=Msa1381030 |
| tig0020421 | mRNA | 65151 | 66468 | 65151 | ID=Msa1381030-mRNA-1;Parent=Msa1381030;Name=Msa1381030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=212|1|1|1|1|1|2|166|285 |
| tig0020421 | exon | 65151 | 65419 | 65151 | ID=Msa1381030-mRNA-1:exon:7329;Parent=Msa1381030-mRNA-1 |
| tig0020421 | exon | 65502 | 66468 | 65502 | ID=Msa1381030-mRNA-1:exon:7330;Parent=Msa1381030-mRNA-1 |
| tig0020421 | five_prime_UTR | 65151 | 65362 | 65151 | ID=Msa1381030-mRNA-1:five_prime_utr;Parent=Msa1381030-mRNA-1 |
| tig0020421 | CDS | 65363 | 65419 | 65363 | ID=Msa1381030-mRNA-1:cds;Parent=Msa1381030-mRNA-1 |
| tig0020421 | CDS | 65502 | 66302 | 65502 | ID=Msa1381030-mRNA-1:cds;Parent=Msa1381030-mRNA-1 |
| tig0020421 | three_prime_UTR | 66303 | 66468 | 66303 | ID=Msa1381030-mRNA-1:three_prime_utr;Parent=Msa1381030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
