AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481670 MtrunA17_Chr7g0266061 95.580 181 6 2 1 179 1 181 6.23e-124 353
Msa0481670 MtrunA17_Chr1g0178931 65.000 140 48 1 40 178 37 176 5.79e-64 200
Msa0481670 MtrunA17_Chr1g0178941 57.407 162 63 3 19 177 22 180 1.57e-55 179
Msa0481670 MtrunA17_Chr1g0198381 62.774 137 47 2 40 176 2 134 1.25e-54 175
Msa0481670 MtrunA17_Chr1g0198351 46.369 179 85 4 1 179 11 178 1.47e-50 166
Msa0481670 MtrunA17_Chr1g0198391 47.753 178 62 4 21 171 14 187 2.66e-44 150
Msa0481670 MtrunA17_Chr1g0178951 60.606 99 36 2 33 128 10 108 1.80e-36 122
Msa0481670 MtrunA17_Chr1g0198401 52.222 90 41 1 89 178 8 95 3.31e-25 98.2
Msa0481670 MtrunA17_Chr1g0198411 72.881 59 14 1 34 92 26 82 4.51e-22 85.1
Msa0481670 MtrunA17_Chr3g0131321 34.014 147 78 4 39 168 33 177 1.27e-16 76.3
Msa0481670 MtrunA17_Chr8g0344931 33.333 174 102 7 7 168 4 175 1.16e-15 73.6
Msa0481670 MtrunA17_Chr7g0275021 31.522 184 95 9 3 169 7 176 1.56e-15 73.2
Msa0481670 MtrunA17_Chr8g0344941 31.868 182 100 7 11 178 18 189 2.04e-15 72.8
Msa0481670 MtrunA17_Chr2g0301641 32.597 181 100 7 4 168 7 181 3.72e-15 72.0
Msa0481670 MtrunA17_Chr8g0349301 34.104 173 94 8 10 168 8 174 4.65e-15 71.6
Msa0481670 MtrunA17_Chr8g0349341 36.806 144 69 7 41 168 38 175 5.35e-15 71.6
Msa0481670 MtrunA17_Chr8g0349321 32.778 180 92 9 8 168 6 175 2.29e-14 69.7
Msa0481670 MtrunA17_Chr1g0182811 33.544 158 86 7 28 168 20 175 2.43e-14 69.7
Msa0481670 MtrunA17_Chr4g0017431 31.373 153 93 3 28 168 19 171 2.58e-14 69.7
Msa0481670 MtrunA17_Chr4g0046151 30.899 178 92 8 6 168 16 177 1.18e-13 67.8
Msa0481670 MtrunA17_Chr1g0156911 32.768 177 104 8 4 167 3 177 1.68e-13 67.4
Msa0481670 MtrunA17_Chr1g0156901 33.889 180 96 9 3 167 19 190 2.23e-13 67.0
Msa0481670 MtrunA17_Chr5g0432101 33.333 144 81 6 39 168 32 174 3.06e-13 66.6
Msa0481670 MtrunA17_Chr7g0275011 32.867 143 77 5 42 168 36 175 3.52e-13 66.6
Msa0481670 MtrunA17_Chr1g0156891 31.285 179 100 7 6 169 16 186 3.81e-13 66.2
Msa0481670 MtrunA17_Chr1g0189891 35.762 151 79 7 42 175 31 180 4.96e-13 65.9
Msa0481670 MtrunA17_Chr3g0077581 29.932 147 94 4 6 146 4 147 5.22e-13 65.9
Msa0481670 MtrunA17_Chr1g0189921 38.542 96 54 3 34 125 25 119 1.84e-12 62.0
Msa0481670 MtrunA17_Chr3g0099231 30.323 155 89 7 36 171 24 178 3.52e-12 63.5
Msa0481670 MtrunA17_Chr1g0189931 41.053 95 53 2 34 125 26 120 4.52e-12 63.2
Msa0481670 MtrunA17_Chr2g0283481 31.788 151 82 5 39 168 46 196 4.91e-12 63.2
Msa0481670 MtrunA17_Chr7g0275001 31.469 143 81 5 42 169 27 167 7.08e-12 62.8
Msa0481670 MtrunA17_Chr2g0321991 34.646 127 70 4 2 124 4 121 1.09e-11 59.3
Msa0481670 MtrunA17_Chr1g0189901 30.986 142 83 5 42 169 33 173 1.65e-11 61.6
Msa0481670 MtrunA17_Chr2g0285001 35.043 117 66 3 10 123 9 118 2.20e-11 61.2
Msa0481670 MtrunA17_Chr3g0077571 32.143 140 79 4 6 143 6 131 2.59e-11 61.2
Msa0481670 MtrunA17_Chr3g0085231 30.556 144 87 4 38 168 29 172 2.66e-11 60.8
Msa0481670 MtrunA17_Chr3g0112821 28.205 156 96 4 28 167 18 173 2.80e-11 60.8
Msa0481670 MtrunA17_Chr3g0086641 33.094 139 85 5 31 166 29 162 3.02e-11 60.8
Msa0481670 MtrunA17_Chr2g0285061 31.944 144 90 5 38 177 30 169 3.73e-11 60.5
Msa0481670 MtrunA17_Chr3g0099151 31.081 148 80 7 41 167 88 234 4.18e-11 60.5
Msa0481670 MtrunA17_Chr2g0283191 29.570 186 92 9 8 169 13 183 4.43e-11 60.5
Msa0481670 MtrunA17_Chr7g0274991 29.787 141 86 4 42 169 35 175 4.59e-11 60.5
Msa0481670 MtrunA17_Chr3g0096551 34.483 145 76 7 41 167 30 173 5.42e-11 60.1
Msa0481670 MtrunA17_Chr6g0457921 30.263 152 89 6 33 168 21 171 5.59e-11 60.1
Msa0481670 MtrunA17_Chr2g0294301 38.462 104 59 3 42 143 37 137 6.35e-11 60.1
Msa0481670 MtrunA17_Chr3g0142921 35.211 142 76 6 41 167 37 177 7.00e-11 59.7
Msa0481670 MtrunA17_Chr8g0380031 31.507 146 81 6 38 168 82 223 7.95e-11 59.7
Msa0481670 MtrunA17_Chr5g0405821 31.844 179 94 8 6 167 18 185 8.06e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481670 AT5G03610.1 54.913 173 75 3 6 175 8 180 1.08e-57 184
Msa0481670 AT3G09930.2 56.579 152 61 4 25 171 22 173 1.41e-53 174
Msa0481670 AT3G09930.1 56.579 152 61 4 25 171 22 173 1.41e-53 174
Msa0481670 AT2G36325.1 52.083 144 66 2 39 179 46 189 1.21e-42 145
Msa0481670 AT5G03590.2 50.758 132 61 4 40 168 35 165 8.25e-34 119
Msa0481670 AT5G03600.1 46.479 142 72 3 36 175 10 149 4.38e-33 120
Msa0481670 AT5G03600.2 46.479 142 72 3 36 175 45 184 6.98e-33 120
Msa0481670 AT5G03590.3 46.903 113 57 3 59 168 5 117 5.26e-25 97.8
Msa0481670 AT1G53920.1 33.898 177 99 5 14 178 27 197 2.64e-20 87.0
Msa0481670 AT5G33370.1 31.548 168 97 7 15 168 8 171 3.43e-14 69.7
Msa0481670 AT1G75930.1 47.872 94 40 5 39 125 28 119 3.59e-14 69.7
Msa0481670 AT5G33370.2 31.361 169 98 7 15 169 8 172 3.74e-14 69.3
Msa0481670 AT5G42170.1 34.921 189 93 11 7 167 4 190 4.30e-14 69.3
Msa0481670 AT1G20130.1 39.167 120 64 5 34 145 198 316 4.52e-14 69.7
Msa0481670 AT3G14820.1 39.860 143 73 6 38 167 30 172 5.23e-14 69.3
Msa0481670 AT1G20130.2 39.167 120 64 5 34 145 178 296 5.41e-14 69.3
Msa0481670 AT5G18430.1 32.571 175 85 8 11 168 12 170 8.22e-14 68.6
Msa0481670 AT1G20132.1 40.833 120 60 6 34 144 55 172 1.05e-13 68.6
Msa0481670 AT1G33811.1 35.772 123 69 5 33 152 27 142 2.95e-13 67.0
Msa0481670 AT3G04290.1 31.073 177 94 7 6 169 10 171 3.16e-13 67.0
Msa0481670 AT3G43570.1 39.597 149 76 8 8 151 3 142 4.91e-13 66.2
Msa0481670 AT1G75880.2 33.143 175 101 6 6 167 21 192 6.35e-13 66.2
Msa0481670 AT4G10950.2 33.548 155 86 5 38 177 69 221 7.01e-13 66.2
Msa0481670 AT1G75880.1 32.955 176 101 6 6 167 21 193 1.95e-12 64.7
Msa0481670 AT2G19060.1 31.852 135 81 5 42 168 32 163 2.01e-12 64.7
Msa0481670 AT1G58520.3 39.695 131 70 6 26 151 16 142 3.72e-12 63.9
Msa0481670 AT1G58525.1 39.695 131 70 6 26 151 16 142 3.72e-12 63.9
Msa0481670 AT5G45960.1 33.540 161 88 8 23 168 32 188 3.73e-12 63.9
Msa0481670 AT3G43550.1 38.255 149 78 7 8 151 3 142 4.83e-12 63.2
Msa0481670 AT1G59406.1 37.778 135 75 6 22 151 12 142 4.94e-12 63.5
Msa0481670 AT1G59030.1 37.778 135 75 6 22 151 12 142 4.94e-12 63.5
Msa0481670 AT1G58725.1 37.778 135 75 6 22 151 12 142 4.94e-12 63.5
Msa0481670 AT4G28780.1 31.492 181 94 9 6 168 4 172 5.59e-12 63.5
Msa0481670 AT2G19010.1 31.111 135 84 4 41 168 31 163 6.10e-12 63.2
Msa0481670 AT1G58430.1 34.266 143 78 6 41 168 36 177 9.09e-12 62.8
Msa0481670 AT1G75910.1 38.095 147 64 8 41 167 29 168 9.38e-12 62.8
Msa0481670 AT1G75900.1 32.955 176 90 9 7 167 20 182 3.60e-11 61.2
Msa0481670 AT3G14220.1 31.429 140 78 6 41 171 33 163 5.70e-11 60.5
Msa0481670 AT1G20135.1 35.185 162 76 8 39 173 28 187 6.38e-11 60.1
Msa0481670 AT4G10950.1 32.500 160 77 7 38 177 69 217 6.57e-11 60.5
Msa0481670 AT2G19050.2 30.657 137 88 3 38 168 29 164 7.05e-11 59.7
Msa0481670 AT2G19050.1 30.657 137 88 3 38 168 29 164 9.20e-11 59.7
Msa0481670 AT1G28640.1 28.804 184 99 7 7 168 8 181 9.87e-11 59.7

Find 63 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCCACAACATTTGAAATA+TGG 0.240247 3_3:-87966815 Msa0481670:CDS
ATCAATTTCCTCAGGCTGTA+TGG 0.326225 3_3:+87966836 None:intergenic
AACTTTGCCTTTGGTGGTAC+TGG 0.331428 3_3:-87966788 Msa0481670:CDS
TGATCTGGGTTGTCATGTTT+GGG 0.333846 3_3:+87966741 None:intergenic
CCTTATGGTATCACCTTTCC+CGG 0.333994 3_3:-87971562 Msa0481670:CDS
TTGATCTGGGTTGTCATGTT+TGG 0.334896 3_3:+87966740 None:intergenic
AAAGAGGTTTGGCTAATTCA+TGG 0.344372 3_3:-87971591 Msa0481670:CDS
TACCTGAGAGATGTAGAATA+AGG 0.354309 3_3:+87971806 None:intergenic
GAAACGGCCGGCAGGTTTGC+CGG 0.357885 3_3:+87971543 None:intergenic
GTATCAAAATTGTTTGTGTT+TGG 0.368114 3_3:-87971643 Msa0481670:CDS
TGTGAATGAACTATATATAA+TGG 0.373601 3_3:+87971991 None:intergenic
TGATTTCACTTTCAAATACT+TGG 0.383835 3_3:+87966865 None:intergenic
TGGGTTGTCATGTTTGGGCC+TGG 0.398569 3_3:+87966746 None:intergenic
ATATAGTTCATTCACACTAT+AGG 0.403807 3_3:-87971984 Msa0481670:five_prime_UTR
TGTAAAACATCATCATGATA+AGG 0.412059 3_3:-87971668 Msa0481670:CDS
AATTCATGGAAACATCCTTA+TGG 0.412685 3_3:-87971577 Msa0481670:CDS
TTCACTTTCCACACTCATCA+TGG 0.427477 3_3:-87971860 Msa0481670:exon
TTCCTTATTCTACATCTCTC+AGG 0.436950 3_3:-87971808 Msa0481670:intron
GTAAAACATCATCATGATAA+GGG 0.438967 3_3:-87971667 Msa0481670:CDS
GTTGCTCTTGTCTCTGTCGC+TGG 0.439755 3_3:-87966659 Msa0481670:CDS
AAACGGCCGGCAGGTTTGCC+GGG 0.440962 3_3:+87971544 None:intergenic
TATGGAATGAACTTTGCCTT+TGG 0.442540 3_3:-87966797 Msa0481670:CDS
ACTCGTTACACGGTCACAAA+TGG 0.476614 3_3:-87966626 Msa0481670:CDS
GAAAATAAGAGAGAGGAGGA+AGG 0.477524 3_3:+87971828 None:intergenic
AATCTTTGTGATTGTGATGA+AGG 0.480818 3_3:+87971933 None:intergenic
ACCTTTCCCGGCAAACCTGC+CGG 0.480955 3_3:-87971550 Msa0481670:CDS
AGGCAACATCAAAAGAGGTT+TGG 0.497083 3_3:-87971602 Msa0481670:CDS
GCCGGCAGGTTTGCCGGGAA+AGG 0.498713 3_3:+87971549 None:intergenic
ATTCCATATTTCAAATGTTG+TGG 0.498820 3_3:+87966812 None:intergenic
ATATTTATTTACAGGACAAA+GGG 0.499237 3_3:-87971713 Msa0481670:intron
TCAATTTCCTCAGGCTGTAT+GGG 0.499873 3_3:+87966837 None:intergenic
CCGGGAAAGGTGATACCATA+AGG 0.507059 3_3:+87971562 None:intergenic
AAAATAAGAGAGAGGAGGAA+GGG 0.507765 3_3:+87971829 None:intergenic
GGAATGAACTTTGCCTTTGG+TGG 0.526847 3_3:-87966794 Msa0481670:CDS
TATATTTATTTACAGGACAA+AGG 0.528173 3_3:-87971714 Msa0481670:intron
GTTGTGGCATCAATTTCCTC+AGG 0.528177 3_3:+87966828 None:intergenic
GGACTCTTCCGTCGGAGAAA+CGG 0.534235 3_3:+87971527 None:intergenic
TTCCTCAGGCTGTATGGGAC+TGG 0.535981 3_3:+87966842 None:intergenic
CCGTCGGAGAAACGGCCGGC+AGG 0.537870 3_3:+87971535 None:intergenic
GGTCACAAATGGCTCGGTTG+AGG 0.538864 3_3:-87966615 None:intergenic
TGGCTACTTTGTTTGAGAGA+GGG 0.543968 3_3:+87971893 None:intergenic
AACTGAATTATTGATTTCTG+AGG 0.546149 3_3:+87966679 None:intergenic
GAATAAGGAAAATAAGAGAG+AGG 0.559792 3_3:+87971821 None:intergenic
GTGTTTGATACGTTGAATCC+AGG 0.559978 3_3:-87966764 Msa0481670:CDS
GTGGCTACTTTGTTTGAGAG+AGG 0.560715 3_3:+87971892 None:intergenic
CCTGCCGGCCGTTTCTCCGA+CGG 0.566677 3_3:-87971535 Msa0481670:CDS
AAACGACTACACTCGTTACA+CGG 0.570553 3_3:-87966636 Msa0481670:CDS
GACACAGGCAACATCAAAAG+AGG 0.571211 3_3:-87971607 Msa0481670:CDS
ATGAGTGTGGAAAGTGAATG+AGG 0.584457 3_3:+87971865 None:intergenic
GGAAAGTGAATGAGGGATAG+TGG 0.587950 3_3:+87971873 None:intergenic
TCTTCCGTCGGAGAAACGGC+CGG 0.593067 3_3:+87971531 None:intergenic
TGAGTGTGGAAAGTGAATGA+GGG 0.608404 3_3:+87971866 None:intergenic
AGAGTCCTCACCGACTACAT+TGG 0.611378 3_3:-87971511 Msa0481670:intron
AAAGAAATCCATGATGAGTG+TGG 0.611854 3_3:+87971852 None:intergenic
GGAGATTCATACGCAGACAC+AGG 0.620989 3_3:-87971622 Msa0481670:CDS
GTCGGTGAGGACTCTTCCGT+CGG 0.625649 3_3:+87971519 None:intergenic
TAAGGAAAATAAGAGAGAGG+AGG 0.625688 3_3:+87971824 None:intergenic
CACCAGTCCCATACAGCCTG+AGG 0.637312 3_3:-87966844 Msa0481670:CDS
TTACACGGTCACAAATGGCT+CGG 0.640697 3_3:-87966621 Msa0481670:CDS
AAACACACCAGTACCACCAA+AGG 0.644534 3_3:+87966781 None:intergenic
TTTATTTACAGGACAAAGGG+TGG 0.645883 3_3:-87971710 Msa0481670:intron
AACACACGTACCAATGTAGT+CGG 0.649118 3_3:+87971501 None:intergenic
ACGTACCAATGTAGTCGGTG+AGG 0.706214 3_3:+87971506 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATACATATATACTAATA+AGG - chr3_3:87967836-87967855 Msa0481670:intron 10.0%
!!! AAAATTTTTTTTATAGCTTT+TGG - chr3_3:87967975-87967994 Msa0481670:intron 10.0%
!! ATGAAAAATATTGAAAAAAA+CGG - chr3_3:87968366-87968385 Msa0481670:intron 10.0%
!!! TTTAAATTTTAATGAAATTC+TGG + chr3_3:87968723-87968742 None:intergenic 10.0%
!!! TTCTAAAAATATTAAAATTC+TGG + chr3_3:87968766-87968785 None:intergenic 10.0%
!! TAAAAAAGATTAAAAAATTC+TGG + chr3_3:87968811-87968830 None:intergenic 10.0%
!!! CAAATTTTTTTTATAGTTTT+TGG + chr3_3:87969313-87969332 None:intergenic 10.0%
!!! CAAAAATTTTTTATAGCTTT+TGG - chr3_3:87967913-87967932 Msa0481670:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG + chr3_3:87968034-87968053 None:intergenic 15.0%
!! AAACTATAAAAAAAAATTGC+AGG + chr3_3:87968035-87968054 None:intergenic 15.0%
!! AAAATTATAAAAGATTTGCA+GGG + chr3_3:87968095-87968114 None:intergenic 15.0%
!! AAAAATTATAAAAGATTTGC+AGG + chr3_3:87968096-87968115 None:intergenic 15.0%
!! GAAAAATAATGAAAAAATTC+TGG - chr3_3:87968462-87968481 Msa0481670:intron 15.0%
!!! ATTTTTGTGTATTTATAAAG+CGG + chr3_3:87968582-87968601 None:intergenic 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG + chr3_3:87968607-87968626 None:intergenic 15.0%
!! AGGAAAAAATTAAAAAAATC+TGG + chr3_3:87968869-87968888 None:intergenic 15.0%
!! AACTATAAAAAAAAAATTGC+AGG - chr3_3:87969192-87969211 Msa0481670:intron 15.0%
!! ACTATAAAAAAAAAATTGCA+GGG - chr3_3:87969193-87969212 Msa0481670:intron 15.0%
!!! CAAAATTTTTTTATAGCTTT+TGG + chr3_3:87969252-87969271 None:intergenic 15.0%
!! AAACTATAAAAAAAATTTGC+AGG - chr3_3:87969314-87969333 Msa0481670:intron 15.0%
!! AACTATAAAAAAAATTTGCA+GGG - chr3_3:87969315-87969334 Msa0481670:intron 15.0%
!! AATGATATATAGTTATTAGT+AGG + chr3_3:87969390-87969409 None:intergenic 15.0%
!! TGAATGTATAATTACTAAAA+GGG + chr3_3:87970442-87970461 None:intergenic 15.0%
!! TTGAATGTATAATTACTAAA+AGG + chr3_3:87970443-87970462 None:intergenic 15.0%
!!! TTAGTTACACTATTTTTAAT+TGG - chr3_3:87970672-87970691 Msa0481670:intron 15.0%
!!! ACTTTGAAATAAGAAAAATA+AGG + chr3_3:87970846-87970865 None:intergenic 15.0%
!! TAATTATCAATCATGTTATT+TGG - chr3_3:87971011-87971030 Msa0481670:intron 15.0%
!! TTCTATTCAAATGTAAATAA+TGG + chr3_3:87971069-87971088 None:intergenic 15.0%
!! ATTATTTACATTTGAATAGA+AGG - chr3_3:87971068-87971087 Msa0481670:intron 15.0%
!!! AAATTTGTTTTTCAGTAAAT+AGG + chr3_3:87971620-87971639 None:intergenic 15.0%
!! TGTGAATGAACTATATATAA+TGG + chr3_3:87966620-87966639 None:intergenic 20.0%
!! TATATTTATTTACAGGACAA+AGG - chr3_3:87966894-87966913 Msa0481670:intron 20.0%
!! ATATTTATTTACAGGACAAA+GGG - chr3_3:87966895-87966914 Msa0481670:intron 20.0%
!! CTAAATCAAAAACAAAATGA+TGG + chr3_3:87967312-87967331 None:intergenic 20.0%
!!! TCTGCTTTTATATACTTTAT+GGG - chr3_3:87967455-87967474 Msa0481670:intron 20.0%
!! CTAAACTATCTAAATATGAA+AGG + chr3_3:87967486-87967505 None:intergenic 20.0%
!! TAATTTAAGGACTTAGTTAA+TGG - chr3_3:87967524-87967543 Msa0481670:intron 20.0%
!!! AACAACTTTTAGAAATATTG+AGG + chr3_3:87967598-87967617 None:intergenic 20.0%
!!! TTCAAAAAAAAAAAAGCGTA+AGG - chr3_3:87967740-87967759 Msa0481670:intron 20.0%
!! ATACTAATAAGGCTAAAATA+TGG - chr3_3:87967847-87967866 Msa0481670:intron 20.0%
!!! AGCTATAAAAAATTTTTGCA+GGG + chr3_3:87967911-87967930 None:intergenic 20.0%
!!! AAGCTATAAAAAATTTTTGC+AGG + chr3_3:87967912-87967931 None:intergenic 20.0%
!!! GCTATAAAAAAAATTTTGCA+GGG + chr3_3:87967972-87967991 None:intergenic 20.0%
!!! AGCTATAAAAAAAATTTTGC+AGG + chr3_3:87967973-87967992 None:intergenic 20.0%
!! CGGAAAAAATTAAAAAAATC+TGG - chr3_3:87968386-87968405 Msa0481670:intron 20.0%
!! TATTTATAAACCGAGAATAA+GGG + chr3_3:87968548-87968567 None:intergenic 20.0%
!!! TTTTTGTGTATTTATAAAGC+GGG + chr3_3:87968581-87968600 None:intergenic 20.0%
!! TATAAATACACAAAAATTCC+CGG - chr3_3:87968585-87968604 Msa0481670:intron 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG + chr3_3:87968606-87968625 None:intergenic 20.0%
!! ACAAATTATAAAAGATTTGC+AGG - chr3_3:87969130-87969149 Msa0481670:intron 20.0%
!! CAAATTATAAAAGATTTGCA+GGG - chr3_3:87969131-87969150 Msa0481670:intron 20.0%
!!! AAGCTATAAAAAAATTTTGC+AGG - chr3_3:87969253-87969272 Msa0481670:intron 20.0%
!!! AGCTATAAAAAAATTTTGCA+GGG - chr3_3:87969254-87969273 Msa0481670:intron 20.0%
!!! ACATTTTTGTCTTATAACTT+TGG + chr3_3:87969446-87969465 None:intergenic 20.0%
!!! ATACTCTTAATTACCATTTT+TGG + chr3_3:87969494-87969513 None:intergenic 20.0%
!! TTCAGTGAACATAATTATAT+GGG + chr3_3:87969571-87969590 None:intergenic 20.0%
!! TTTCAGTGAACATAATTATA+TGG + chr3_3:87969572-87969591 None:intergenic 20.0%
!! GAAACTAGTTAATCAATATA+TGG - chr3_3:87969610-87969629 Msa0481670:intron 20.0%
!! TTTAGTAATCATTGCTTTAA+CGG - chr3_3:87969896-87969915 Msa0481670:intron 20.0%
!!! AATTGCTTATAATTGCTTTT+TGG + chr3_3:87970089-87970108 None:intergenic 20.0%
!! AAAGAAAGAGAATTGATAAA+GGG + chr3_3:87970212-87970231 None:intergenic 20.0%
!! TAAAGAAAGAGAATTGATAA+AGG + chr3_3:87970213-87970232 None:intergenic 20.0%
!!! TGACATTAATCTATTCATTT+TGG + chr3_3:87970710-87970729 None:intergenic 20.0%
!! ATAAGAAAAATAAGGATATC+CGG + chr3_3:87970838-87970857 None:intergenic 20.0%
!!! TGATTGATAATTACGTAAAT+GGG + chr3_3:87971004-87971023 None:intergenic 20.0%
!!! ATGATTGATAATTACGTAAA+TGG + chr3_3:87971005-87971024 None:intergenic 20.0%
!! AATGTTGTGTTTACAATAAT+TGG + chr3_3:87971140-87971159 None:intergenic 20.0%
!!! ATAATTAAGATTTTTAGTGC+AGG + chr3_3:87971504-87971523 None:intergenic 20.0%
! ATATAGTTCATTCACACTAT+AGG - chr3_3:87966624-87966643 Msa0481670:CDS 25.0%
! TGTAAAACATCATCATGATA+AGG - chr3_3:87966940-87966959 Msa0481670:intron 25.0%
! GTAAAACATCATCATGATAA+GGG - chr3_3:87966941-87966960 Msa0481670:intron 25.0%
! GTATCAAAATTGTTTGTGTT+TGG - chr3_3:87966965-87966984 Msa0481670:intron 25.0%
!!! GATTTAGTTCTTAAACTACA+TGG - chr3_3:87967325-87967344 Msa0481670:intron 25.0%
! ACATGAAAATCTTTCAATTC+AGG - chr3_3:87967400-87967419 Msa0481670:intron 25.0%
!!! GTCTGCTTTTATATACTTTA+TGG - chr3_3:87967454-87967473 Msa0481670:intron 25.0%
!!! AAACTGAGAGTGTTAATTTA+AGG - chr3_3:87967511-87967530 Msa0481670:intron 25.0%
! GTATTTATAAACCGAGAATA+AGG + chr3_3:87968549-87968568 None:intergenic 25.0%
! GTTATTAGTAGGCTAAAATA+TGG + chr3_3:87969379-87969398 None:intergenic 25.0%
!!! AAAATGTGTCACTTTCAATA+TGG - chr3_3:87969459-87969478 Msa0481670:intron 25.0%
! ATGGATAATACTACCAAAAA+TGG - chr3_3:87969478-87969497 Msa0481670:intron 25.0%
!! TTTTTACAAAACACAGTTGT+AGG + chr3_3:87969544-87969563 None:intergenic 25.0%
! ACTAGTTAATCAATATATGG+TGG - chr3_3:87969613-87969632 Msa0481670:intron 25.0%
! CTAGTTAATCAATATATGGT+GGG - chr3_3:87969614-87969633 Msa0481670:intron 25.0%
! TAGTTAATCAATATATGGTG+GGG - chr3_3:87969615-87969634 Msa0481670:intron 25.0%
! TGCTAATTGTTTATCTATTC+TGG - chr3_3:87969676-87969695 Msa0481670:intron 25.0%
! TGCATAAACAAACACAATAA+TGG + chr3_3:87969724-87969743 None:intergenic 25.0%
! AAAACAGTGCAAAAAAGAAA+GGG + chr3_3:87969773-87969792 None:intergenic 25.0%
! AAAAACAGTGCAAAAAAGAA+AGG + chr3_3:87969774-87969793 None:intergenic 25.0%
!!! AACTGCTTATAATTGCTTTT+TGG + chr3_3:87970015-87970034 None:intergenic 25.0%
!!! AAACCAAACATGTTGTTTTT+TGG + chr3_3:87970042-87970061 None:intergenic 25.0%
! AAAAAACAACATGTTTGGTT+TGG - chr3_3:87970041-87970060 Msa0481670:intron 25.0%
! GGGCAATAAAGAAAAATAAT+AGG + chr3_3:87970192-87970211 None:intergenic 25.0%
! ACTAAAATAGACATAGCTAA+AGG + chr3_3:87970244-87970263 None:intergenic 25.0%
!!! TAGCTATGTCTATTTTAGTA+AGG - chr3_3:87970245-87970264 Msa0481670:intron 25.0%
!!! AGCTATGTCTATTTTAGTAA+GGG - chr3_3:87970246-87970265 Msa0481670:intron 25.0%
!! TGACTTAAAATTTCCACTTT+TGG + chr3_3:87970311-87970330 None:intergenic 25.0%
! TAAACAAACTGAATGTTGTT+TGG + chr3_3:87970488-87970507 None:intergenic 25.0%
! ACTAAATTACAATGCTTCTT+AGG - chr3_3:87970802-87970821 Msa0481670:intron 25.0%
!!! CTACTTAATTTCTAGTACTT+CGG + chr3_3:87970962-87970981 None:intergenic 25.0%
! AAGTACTAGAAATTAAGTAG+AGG - chr3_3:87970962-87970981 Msa0481670:intron 25.0%
!!! AGAATACGTTTTTTCATGTT+TGG - chr3_3:87971286-87971305 Msa0481670:intron 25.0%
!! ATGTGAATCGCTTTAAATTT+AGG - chr3_3:87971409-87971428 Msa0481670:intron 25.0%
! ATTTAGGAAAAACTATACCT+AGG - chr3_3:87971425-87971444 Msa0481670:intron 25.0%
!!! CGTAATTTTTTTAAAGACCT+AGG + chr3_3:87971445-87971464 None:intergenic 25.0%
! ATATTGTTGAAAGTCTCATT+GGG - chr3_3:87971559-87971578 Msa0481670:CDS 25.0%
!! AAGCTTTTGTATTTTTCTTC+TGG - chr3_3:87971667-87971686 Msa0481670:CDS 25.0%
! TGATTTCACTTTCAAATACT+TGG + chr3_3:87971746-87971765 None:intergenic 25.0%
! ATTCCATATTTCAAATGTTG+TGG + chr3_3:87971799-87971818 None:intergenic 25.0%
! CTGTTGAAAAAAATTGATCT+GGG + chr3_3:87971884-87971903 None:intergenic 25.0%
! TCTGTTGAAAAAAATTGATC+TGG + chr3_3:87971885-87971904 None:intergenic 25.0%
!!! AACTGAATTATTGATTTCTG+AGG + chr3_3:87971932-87971951 None:intergenic 25.0%
AATCTTTGTGATTGTGATGA+AGG + chr3_3:87966678-87966697 None:intergenic 30.0%
GAATAAGGAAAATAAGAGAG+AGG + chr3_3:87966790-87966809 None:intergenic 30.0%
AATTCATGGAAACATCCTTA+TGG - chr3_3:87967031-87967050 Msa0481670:intron 30.0%
TCATTAGTGAGTATTTGAGT+AGG + chr3_3:87967807-87967826 None:intergenic 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG + chr3_3:87969225-87969244 None:intergenic 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG + chr3_3:87969225-87969244 None:intergenic 30.0%
! AAAACTGGCATAATTTTGCA+GGG + chr3_3:87969163-87969182 None:intergenic 30.0%
TTAGTATATATGTCGAGCTT+AGG - chr3_3:87968504-87968523 Msa0481670:intron 30.0%
! GTGTATTTTTCCCTTATTCT+CGG - chr3_3:87968535-87968554 Msa0481670:intron 30.0%
! TTTATAAAGCGGGAACTTTT+GGG + chr3_3:87968571-87968590 None:intergenic 30.0%
! ATTTATAAAGCGGGAACTTT+TGG + chr3_3:87968572-87968591 None:intergenic 30.0%
! AAAACTGGCATAATTTTGCA+GGG - chr3_3:87969163-87969182 Msa0481670:intron 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - chr3_3:87969225-87969244 Msa0481670:intron 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - chr3_3:87969225-87969244 Msa0481670:intron 30.0%
! CAAAACTGATCTATTTTGCA+GGG - chr3_3:87969346-87969365 Msa0481670:intron 30.0%
TAAACAATTAGCACGAGAAA+AGG + chr3_3:87969669-87969688 None:intergenic 30.0%
GGGTGTGCTAAAAATAAAAA+AGG + chr3_3:87969752-87969771 None:intergenic 30.0%
AAACAGTGCAAAAAAGAAAG+GGG + chr3_3:87969772-87969791 None:intergenic 30.0%
ATAAGAACAAAAGTCTGTGT+GGG + chr3_3:87969869-87969888 None:intergenic 30.0%
AATAAGAACAAAAGTCTGTG+TGG + chr3_3:87969870-87969889 None:intergenic 30.0%
TTTGAAAAGCTAAACCAAAC+AGG + chr3_3:87969981-87970000 None:intergenic 30.0%
TAGCCAAAAAACAACATGTT+TGG - chr3_3:87970036-87970055 Msa0481670:intron 30.0%
! TGGGAGAATTGATTTATGTT+TGG + chr3_3:87970532-87970551 None:intergenic 30.0%
! ATTCTGACAGAATTGATTCT+GGG + chr3_3:87970551-87970570 None:intergenic 30.0%
AAAATAAGGATATCCGGAAT+CGG + chr3_3:87970832-87970851 None:intergenic 30.0%
AACACAACATTCTTTGACAT+AGG - chr3_3:87971149-87971168 Msa0481670:intron 30.0%
CCTTCTACATAGAGTTTAAA+AGG + chr3_3:87971198-87971217 None:intergenic 30.0%
! CCTTTTAAACTCTATGTAGA+AGG - chr3_3:87971195-87971214 Msa0481670:intron 30.0%
TGATTTAAAGACTTGACTGA+GGG + chr3_3:87971389-87971408 None:intergenic 30.0%
TTGATTTAAAGACTTGACTG+AGG + chr3_3:87971390-87971409 None:intergenic 30.0%
AAGAGGTTAACAAAACTCAT+CGG + chr3_3:87971530-87971549 None:intergenic 30.0%
ATGAGACTTTCAACAATATG+CGG + chr3_3:87971558-87971577 None:intergenic 30.0%
CATATTGTTGAAAGTCTCAT+TGG - chr3_3:87971558-87971577 Msa0481670:CDS 30.0%
! ATGCCACAACATTTGAAATA+TGG - chr3_3:87971793-87971812 Msa0481670:intron 30.0%
AAAGAAATCCATGATGAGTG+TGG + chr3_3:87966759-87966778 None:intergenic 35.0%
AAAATAAGAGAGAGGAGGAA+GGG + chr3_3:87966782-87966801 None:intergenic 35.0%
TAAGGAAAATAAGAGAGAGG+AGG + chr3_3:87966787-87966806 None:intergenic 35.0%
TTCCTTATTCTACATCTCTC+AGG - chr3_3:87966800-87966819 Msa0481670:CDS 35.0%
TACCTGAGAGATGTAGAATA+AGG + chr3_3:87966805-87966824 None:intergenic 35.0%
TTTATTTACAGGACAAAGGG+TGG - chr3_3:87966898-87966917 Msa0481670:intron 35.0%
AAAGAGGTTTGGCTAATTCA+TGG - chr3_3:87967017-87967036 Msa0481670:intron 35.0%
!! ATTTGCTGTAATGATGCAGT+TGG + chr3_3:87967138-87967157 None:intergenic 35.0%
TCTTTCAATTCAGGACATGA+TGG - chr3_3:87967409-87967428 Msa0481670:intron 35.0%
! CAAAACTGACCTATTTTGCA+GGG + chr3_3:87967880-87967899 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG + chr3_3:87969224-87969243 None:intergenic 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG - chr3_3:87967939-87967958 Msa0481670:intron 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG + chr3_3:87969224-87969243 None:intergenic 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG - chr3_3:87967939-87967958 Msa0481670:intron 35.0%
! CAAAACTGGCATAATTTTGC+AGG + chr3_3:87969162-87969181 None:intergenic 35.0%
! CAAAACTGGCATAATTTTGC+AGG - chr3_3:87969162-87969181 Msa0481670:intron 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + chr3_3:87967939-87967958 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - chr3_3:87969224-87969243 Msa0481670:intron 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + chr3_3:87967939-87967958 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - chr3_3:87969224-87969243 Msa0481670:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG + chr3_3:87969297-87969316 None:intergenic 35.0%
! CCTGCAAAATAGATCAGTTT+TGG + chr3_3:87969348-87969367 None:intergenic 35.0%
! CCAAAACTGATCTATTTTGC+AGG - chr3_3:87969345-87969364 Msa0481670:intron 35.0%
CATTACCATTTCCTCTCTAT+GGG - chr3_3:87969955-87969974 Msa0481670:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr3_3:87970130-87970149 None:intergenic 35.0%
! GATTCTGACAGAATTGATTC+TGG + chr3_3:87970552-87970571 None:intergenic 35.0%
TCAATGACATAGTGTGTGTT+TGG + chr3_3:87970609-87970628 None:intergenic 35.0%
! ATATTTTGCTCGAAATGTCG+TGG + chr3_3:87970651-87970670 None:intergenic 35.0%
GATTAATGCAAAGTATGCAG+TGG + chr3_3:87970744-87970763 None:intergenic 35.0%
AAATAAGGATATCCGGAATC+GGG + chr3_3:87970831-87970850 None:intergenic 35.0%
CGTCAGATCATTGTGATAAA+AGG + chr3_3:87970881-87970900 None:intergenic 35.0%
! TTTTGCTGACAAAGTTAGAG+AGG + chr3_3:87970908-87970927 None:intergenic 35.0%
TTCGGCAACATGATTAAAGT+TGG + chr3_3:87970944-87970963 None:intergenic 35.0%
ACATTTGAATAGAAGGCAAG+CGG - chr3_3:87971075-87971094 Msa0481670:intron 35.0%
!!! ATTGGTTTTGCCTTCCAAAA+AGG + chr3_3:87971122-87971141 None:intergenic 35.0%
!! TTTCGATTTTCTAGCATCAG+AGG + chr3_3:87971228-87971247 None:intergenic 35.0%
! TAAAAGCGCGTCAAATAAAG+TGG + chr3_3:87971312-87971331 None:intergenic 35.0%
!! ACTTTATTTGACGCGCTTTT+AGG - chr3_3:87971311-87971330 Msa0481670:intron 35.0%
!! CTTTATTTGACGCGCTTTTA+GGG - chr3_3:87971312-87971331 Msa0481670:intron 35.0%
! TTAGTGCAGGTTGAAAATTG+CGG + chr3_3:87971491-87971510 None:intergenic 35.0%
AACAATATGCGGCAATTAAG+AGG + chr3_3:87971547-87971566 None:intergenic 35.0%
TATGGAATGAACTTTGCCTT+TGG - chr3_3:87971811-87971830 Msa0481670:CDS 35.0%
! TGGCTACTTTGTTTGAGAGA+GGG + chr3_3:87966718-87966737 None:intergenic 40.0%
TGAGTGTGGAAAGTGAATGA+GGG + chr3_3:87966745-87966764 None:intergenic 40.0%
ATGAGTGTGGAAAGTGAATG+AGG + chr3_3:87966746-87966765 None:intergenic 40.0%
TTCACTTTCCACACTCATCA+TGG - chr3_3:87966748-87966767 Msa0481670:CDS 40.0%
GAAAATAAGAGAGAGGAGGA+AGG + chr3_3:87966783-87966802 None:intergenic 40.0%
AGGCAACATCAAAAGAGGTT+TGG - chr3_3:87967006-87967025 Msa0481670:intron 40.0%
AACACACGTACCAATGTAGT+CGG + chr3_3:87967110-87967129 None:intergenic 40.0%
TACTCGCATCTTCAAGCATA+AGG - chr3_3:87967706-87967725 Msa0481670:intron 40.0%
!! GGTTTTGATCCCTGCAAAAT+AGG - chr3_3:87967868-87967887 Msa0481670:intron 40.0%
! CCAAAACTGACCTATTTTGC+AGG + chr3_3:87967881-87967900 None:intergenic 40.0%
! CCTGCAAAATAGGTCAGTTT+TGG - chr3_3:87967878-87967897 Msa0481670:intron 40.0%
! CTTTTGGTCCCTGCAAAAAT+AGG - chr3_3:87967929-87967948 Msa0481670:intron 40.0%
! CTTTTGGTCCCTGCAAAAAT+AGG - chr3_3:87967929-87967948 Msa0481670:intron 40.0%
! CTTTTGGTCCCTGCAAAAAT+AGG + chr3_3:87967929-87967948 None:intergenic 40.0%
GTTTATCTATTCTGGCGTTG+TGG - chr3_3:87969684-87969703 Msa0481670:intron 40.0%
CCATAGAGAGGAAATGGTAA+TGG + chr3_3:87969957-87969976 None:intergenic 40.0%
CCATTACCATTTCCTCTCTA+TGG - chr3_3:87969954-87969973 Msa0481670:intron 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + chr3_3:87970114-87970133 None:intergenic 40.0%
!! GTGGCAGTATTGGTAAAAAG+AGG + chr3_3:87970632-87970651 None:intergenic 40.0%
ATGCAAAGTATGCAGTGGTT+TGG + chr3_3:87970739-87970758 None:intergenic 40.0%
! TTTTGCCTTCCAAAAAGGCT+TGG + chr3_3:87971117-87971136 None:intergenic 40.0%
!!! ATTAGGTGTCGGACCTTTTA+TGG + chr3_3:87971350-87971369 None:intergenic 40.0%
TCAATTTCCTCAGGCTGTAT+GGG + chr3_3:87971774-87971793 None:intergenic 40.0%
ATCAATTTCCTCAGGCTGTA+TGG + chr3_3:87971775-87971794 None:intergenic 40.0%
GTGTTTGATACGTTGAATCC+AGG - chr3_3:87971844-87971863 Msa0481670:CDS 40.0%
TGATCTGGGTTGTCATGTTT+GGG + chr3_3:87971870-87971889 None:intergenic 40.0%
TTGATCTGGGTTGTCATGTT+TGG + chr3_3:87971871-87971890 None:intergenic 40.0%
AAACGACTACACTCGTTACA+CGG - chr3_3:87971972-87971991 Msa0481670:five_prime_UTR 40.0%
! GTGGCTACTTTGTTTGAGAG+AGG + chr3_3:87966719-87966738 None:intergenic 45.0%
GGAAAGTGAATGAGGGATAG+TGG + chr3_3:87966738-87966757 None:intergenic 45.0%
GACACAGGCAACATCAAAAG+AGG - chr3_3:87967001-87967020 Msa0481670:intron 45.0%
CCTTATGGTATCACCTTTCC+CGG - chr3_3:87967046-87967065 Msa0481670:intron 45.0%
GACATGATGGCATCTTAAGC+AGG - chr3_3:87967422-87967441 Msa0481670:intron 45.0%
GCAGGGACTAAAAGCAAAAC+TGG + chr3_3:87969148-87969167 None:intergenic 45.0%
GCAGGGACTAAAAGCAAAAC+TGG - chr3_3:87969148-87969167 Msa0481670:intron 45.0%
CTGGTTAAGGAAGCCAAAAG+TGG - chr3_3:87970295-87970314 Msa0481670:intron 45.0%
TCGAAATGTCGTGGCAGTAT+TGG + chr3_3:87970642-87970661 None:intergenic 45.0%
CTTCTTAGGATTCCCGATTC+CGG - chr3_3:87970816-87970835 Msa0481670:intron 45.0%
GTTTCACCACTTGTGGGATT+AGG + chr3_3:87971367-87971386 None:intergenic 45.0%
! TGCAGGTTGAAAATTGCGGT+GGG + chr3_3:87971487-87971506 None:intergenic 45.0%
GTTGTGGCATCAATTTCCTC+AGG + chr3_3:87971783-87971802 None:intergenic 45.0%
GGAATGAACTTTGCCTTTGG+TGG - chr3_3:87971814-87971833 Msa0481670:CDS 45.0%
! AACTTTGCCTTTGGTGGTAC+TGG - chr3_3:87971820-87971839 Msa0481670:CDS 45.0%
AAACACACCAGTACCACCAA+AGG + chr3_3:87971830-87971849 None:intergenic 45.0%
ACTCGTTACACGGTCACAAA+TGG - chr3_3:87971982-87972001 Msa0481670:five_prime_UTR 45.0%
TTACACGGTCACAAATGGCT+CGG - chr3_3:87971987-87972006 Msa0481670:five_prime_UTR 45.0%
!! AAATTTATATATTTATTTAC+AGG - chr3_3:87966887-87966906 Msa0481670:intron 5.0%
!!! TTTTATAAATTAAAAAATTC+TGG - chr3_3:87968115-87968134 Msa0481670:intron 5.0%
!! TAAAAAAATTAAAAAAATTC+TGG - chr3_3:87968154-87968173 Msa0481670:intron 5.0%
!! AAAAAAATTTAAAAAAATTC+TGG - chr3_3:87968232-87968251 Msa0481670:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr3_3:87968272-87968291 Msa0481670:intron 5.0%
!! AAAAAAATATTAAAAAATTC+TGG - chr3_3:87968272-87968291 Msa0481670:intron 5.0%
!! TTAATAAAAATGAAAAAAAA+AGG + chr3_3:87968889-87968908 None:intergenic 5.0%
!! AAAAAAATATTAAAAAAATC+TGG + chr3_3:87968964-87968983 None:intergenic 5.0%
!! ATAAAAAAATTTAAAAATTC+TGG + chr3_3:87969013-87969032 None:intergenic 5.0%
!! AAAAATTATTAAAAAAATTC+TGG + chr3_3:87969051-87969070 None:intergenic 5.0%
!! AAAAATTAATAAAAAAATTC+TGG + chr3_3:87969081-87969100 None:intergenic 5.0%
!!! TTTTATAAATTAAAAAATTC+TGG + chr3_3:87968115-87968134 None:intergenic 5.0%
!!! AATTTTTTTTTTATAGTTTT+TGG + chr3_3:87969190-87969209 None:intergenic 5.0%
GGAGATTCATACGCAGACAC+AGG - chr3_3:87966986-87967005 Msa0481670:intron 50.0%
CCGGGAAAGGTGATACCATA+AGG + chr3_3:87967049-87967068 None:intergenic 50.0%
! AGAGTCCTCACCGACTACAT+TGG - chr3_3:87967097-87967116 Msa0481670:intron 50.0%
ACGTACCAATGTAGTCGGTG+AGG + chr3_3:87967105-87967124 None:intergenic 50.0%
GGTGGGGTTCATTTCTCTAC+TGG - chr3_3:87969631-87969650 Msa0481670:intron 50.0%
AAGTCTGTGTGGGCAAAGCT+TGG + chr3_3:87969859-87969878 None:intergenic 50.0%
ACAGGCCCATAGAGAGGAAA+TGG + chr3_3:87969963-87969982 None:intergenic 50.0%
TTCCTCTCTATGGGCCTGTT+TGG - chr3_3:87969964-87969983 Msa0481670:intron 50.0%
AACCAAACAGGCCCATAGAG+AGG + chr3_3:87969969-87969988 None:intergenic 50.0%
TAACTCCTTAACCAGTGCCC+CGG - chr3_3:87970398-87970417 Msa0481670:intron 50.0%
AAATGTTAACCAGTGCCCCC+GGG + chr3_3:87970419-87970438 None:intergenic 50.0%
GAAATGTTAACCAGTGCCCC+CGG + chr3_3:87970420-87970439 None:intergenic 50.0%
CCACTTGTGGGATTAGGTGT+CGG + chr3_3:87971361-87971380 None:intergenic 50.0%
CTGAGGGTTTCACCACTTGT+GGG + chr3_3:87971373-87971392 None:intergenic 50.0%
ACTGAGGGTTTCACCACTTG+TGG + chr3_3:87971374-87971393 None:intergenic 50.0%
CGGTGGGATTGACGAAATCA+CGG + chr3_3:87971471-87971490 None:intergenic 50.0%
! GTGCAGGTTGAAAATTGCGG+TGG + chr3_3:87971488-87971507 None:intergenic 50.0%
GGACTCTTCCGTCGGAGAAA+CGG + chr3_3:87967084-87967103 None:intergenic 55.0%
GTCATGTTAACCAGTGCCCC+CGG - chr3_3:87970268-87970287 Msa0481670:intron 55.0%
TCATGTTAACCAGTGCCCCC+GGG - chr3_3:87970269-87970288 Msa0481670:intron 55.0%
AACTCCTTAACCAGTGCCCC+GGG - chr3_3:87970399-87970418 Msa0481670:intron 55.0%
AATGTTAACCAGTGCCCCCG+GGG + chr3_3:87970418-87970437 None:intergenic 55.0%
! CGTCGCCAAGCCTTTTTGGA+AGG - chr3_3:87971109-87971128 Msa0481670:intron 55.0%
GCTGCCTGTCGCACCATAAA+AGG - chr3_3:87971334-87971353 Msa0481670:intron 55.0%
! CGGACCTTTTATGGTGCGAC+AGG + chr3_3:87971341-87971360 None:intergenic 55.0%
CCGACACCTAATCCCACAAG+TGG - chr3_3:87971358-87971377 Msa0481670:intron 55.0%
TTCCTCAGGCTGTATGGGAC+TGG + chr3_3:87971769-87971788 None:intergenic 55.0%
TGGGTTGTCATGTTTGGGCC+TGG + chr3_3:87971865-87971884 None:intergenic 55.0%
GTTGCTCTTGTCTCTGTCGC+TGG - chr3_3:87971949-87971968 Msa0481670:five_prime_UTR 55.0%
ACCTTTCCCGGCAAACCTGC+CGG - chr3_3:87967058-87967077 Msa0481670:intron 60.0%
TCTTCCGTCGGAGAAACGGC+CGG + chr3_3:87967080-87967099 None:intergenic 60.0%
GTCGGTGAGGACTCTTCCGT+CGG + chr3_3:87967092-87967111 None:intergenic 60.0%
CATGTTAACCAGTGCCCCCG+GGG - chr3_3:87970270-87970289 Msa0481670:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr3_3:87970287-87970306 None:intergenic 60.0%
CTTCCTTAACCAGTGCCCCG+GGG + chr3_3:87970288-87970307 None:intergenic 60.0%
GCTTCCTTAACCAGTGCCCC+GGG + chr3_3:87970289-87970308 None:intergenic 60.0%
GGCTTCCTTAACCAGTGCCC+CGG + chr3_3:87970290-87970309 None:intergenic 60.0%
ACTCCTTAACCAGTGCCCCG+GGG - chr3_3:87970400-87970419 Msa0481670:intron 60.0%
! GCTGCGTCGCCAAGCCTTTT+TGG - chr3_3:87971105-87971124 Msa0481670:intron 60.0%
CACCAGTCCCATACAGCCTG+AGG - chr3_3:87971764-87971783 Msa0481670:intron 60.0%
AAACGGCCGGCAGGTTTGCC+GGG + chr3_3:87967067-87967086 None:intergenic 65.0%
GAAACGGCCGGCAGGTTTGC+CGG + chr3_3:87967068-87967087 None:intergenic 65.0%
CTCCTTAACCAGTGCCCCGG+GGG - chr3_3:87970401-87970420 Msa0481670:intron 65.0%
GCCGGCAGGTTTGCCGGGAA+AGG + chr3_3:87967062-87967081 None:intergenic 70.0%
CCTGCCGGCCGTTTCTCCGA+CGG - chr3_3:87967073-87967092 Msa0481670:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr3_3:87970282-87970301 Msa0481670:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG + chr3_3:87970282-87970301 None:intergenic 70.0%
CCGTCGGAGAAACGGCCGGC+AGG + chr3_3:87967076-87967095 None:intergenic 75.0%
AACCAGTGCCCCCGGGGCAC+TGG - chr3_3:87970276-87970295 Msa0481670:intron 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG + chr3_3:87970407-87970426 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG - chr3_3:87970407-87970426 Msa0481670:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG + chr3_3:87970276-87970295 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 87966616 87972014 87966616 ID=Msa0481670;Name=Msa0481670
chr3_3 mRNA 87966616 87972014 87966616 ID=Msa0481670-mRNA-1;Parent=Msa0481670;Name=Msa0481670-mRNA-1;_AED=0.06;_eAED=0.06;_QI=151|1|1|1|1|1|3|0|179
chr3_3 exon 87966616 87966887 87966616 ID=Msa0481670-mRNA-1:exon:25540;Parent=Msa0481670-mRNA-1
chr3_3 exon 87971512 87971721 87971512 ID=Msa0481670-mRNA-1:exon:25539;Parent=Msa0481670-mRNA-1
chr3_3 exon 87971809 87972014 87971809 ID=Msa0481670-mRNA-1:exon:25538;Parent=Msa0481670-mRNA-1
chr3_3 five_prime_UTR 87971864 87972014 87971864 ID=Msa0481670-mRNA-1:five_prime_utr;Parent=Msa0481670-mRNA-1
chr3_3 CDS 87971809 87971863 87971809 ID=Msa0481670-mRNA-1:cds;Parent=Msa0481670-mRNA-1
chr3_3 CDS 87971512 87971721 87971512 ID=Msa0481670-mRNA-1:cds;Parent=Msa0481670-mRNA-1
chr3_3 CDS 87966616 87966887 87966616 ID=Msa0481670-mRNA-1:cds;Parent=Msa0481670-mRNA-1
Gene Sequence

>Msa0481670

ATGGATTTCTTTCCCTTCCTCCTCTCTCTTATTTTCCTTATTCTACATCTCTCAGGACAAAGGGTGGTAGAAGCTGAAGATAATCTTGTAAAACATCATCATGATAAGGGTGTATCAAAATTGTTTGTGTTTGGAGATTCATACGCAGACACAGGCAACATCAAAAGAGGTTTGGCTAATTCATGGAAACATCCTTATGGTATCACCTTTCCCGGCAAACCTGCCGGCCGTTTCTCCGACGGAAGAGTCCTCACCGACTACATTGCCAAGTATTTGAAAGTGAAATCACCAGTCCCATACAGCCTGAGGAAATTGATGCCACAACATTTGAAATATGGAATGAACTTTGCCTTTGGTGGTACTGGTGTGTTTGATACGTTGAATCCAGGCCCAAACATGACAACCCAGATCAATTTTTTTCAACAGATCATAAAAGACAAAGTGTACACAGCCTCAGAAATCAATAATTCAGTTGCTCTTGTCTCTGTCGCTGGAAACGACTACACTCGTTACACGGTCACAAATGGCTCGGTTGAG
Protein sequence

>Msa0481670

MDFFPFLLSLIFLILHLSGQRVVEAEDNLVKHHHDKGVSKLFVFGDSYADTGNIKRGLANSWKHPYGITFPGKPAGRFSDGRVLTDYIAKYLKVKSPVPYSLRKLMPQHLKYGMNFAFGGTGVFDTLNPGPNMTTQINFFQQIIKDKVYTASEINNSVALVSVAGNDYTRYTVTNGSVE