AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098050 MtrunA17_Chr1g0151951 97.204 930 26 0 1 930 1 930 0.0 1886
Msa0098050 MtrunA17_Chr3g0135341 78.680 727 153 1 204 930 16 740 0.0 1235
Msa0098050 MtrunA17_Chr3g0135341 29.201 363 227 7 22 365 2 353 8.33e-33 136
Msa0098050 MtrunA17_Chr3g0145541 32.724 492 311 9 450 930 77 559 1.20e-79 269
Msa0098050 MtrunA17_Chr7g0223191 30.483 538 326 14 388 912 17 519 1.35e-68 238
Msa0098050 MtrunA17_Chr5g0421191 29.870 539 324 13 388 910 43 543 1.01e-66 234
Msa0098050 MtrunA17_Chr1g0207211 28.447 573 358 14 377 930 41 580 8.68e-66 231
Msa0098050 MtrunA17_Chr4g0037551 29.787 564 348 15 373 921 31 561 3.14e-63 224
Msa0098050 MtrunA17_Chr1g0207241 28.285 548 348 13 380 913 50 566 7.57e-60 215
Msa0098050 MtrunA17_Chr1g0207231 28.953 487 313 14 462 930 1 472 5.21e-59 209
Msa0098050 MtrunA17_Chr1g0207201 29.851 469 300 11 462 915 1 455 8.96e-58 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098050 AT1G58370.2 67.018 949 287 8 1 930 1 942 0.0 1317
Msa0098050 AT1G58370.1 69.137 904 268 5 31 930 18 914 0.0 1311
Msa0098050 AT1G58370.1 25.496 353 238 7 198 541 11 347 1.77e-29 127
Msa0098050 AT1G10050.3 60.178 899 334 9 40 930 213 1095 0.0 1123
Msa0098050 AT1G10050.3 34.483 522 299 12 42 546 37 532 1.79e-70 254
Msa0098050 AT1G10050.2 60.178 899 334 9 40 930 181 1063 0.0 1122
Msa0098050 AT1G10050.2 34.483 522 299 12 42 546 5 500 2.16e-70 253
Msa0098050 AT1G10050.1 60.178 899 334 9 40 930 181 1063 0.0 1122
Msa0098050 AT1G10050.1 34.483 522 299 12 42 546 5 500 2.16e-70 253
Msa0098050 AT4G08160.1 65.633 742 238 6 199 930 15 749 0.0 1035
Msa0098050 AT4G08160.1 26.686 341 222 9 43 365 27 357 3.78e-27 119
Msa0098050 AT4G08160.2 66.000 650 204 6 199 838 15 657 0.0 903
Msa0098050 AT4G08160.2 26.686 341 222 9 43 365 27 357 2.48e-27 119
Msa0098050 AT4G38650.1 34.161 483 291 10 464 930 91 562 8.59e-81 273
Msa0098050 AT4G33830.1 27.322 549 357 12 388 924 47 565 5.30e-68 238
Msa0098050 AT4G33840.1 26.993 552 350 14 388 921 46 562 9.75e-63 223
Msa0098050 AT4G33860.1 27.737 548 343 15 388 917 46 558 1.40e-62 223
Msa0098050 AT4G38300.1 42.353 255 135 3 561 813 12 256 1.60e-61 210
Msa0098050 AT4G33810.1 28.745 494 314 16 449 918 33 512 6.47e-53 194
Msa0098050 AT4G33810.5 28.745 494 314 16 449 918 33 512 6.47e-53 194
Msa0098050 AT4G33810.2 28.745 494 314 16 449 918 73 552 1.26e-52 194
Msa0098050 AT4G33810.3 28.745 494 314 16 449 918 73 552 1.26e-52 194
Msa0098050 AT4G33810.4 28.745 494 314 16 449 918 73 552 1.26e-52 194
Msa0098050 AT4G33820.1 28.151 476 309 13 464 918 90 553 1.05e-50 188
Msa0098050 AT2G14690.1 29.012 486 300 18 464 918 82 553 3.88e-48 181

Find 249 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTCTTTCTTATTAT+TGG 0.057128 1_3:-3976127 Msa0098050:three_prime_UTR
ATGTGTTCAATGTATTTATT+TGG 0.179825 1_3:+3976690 None:intergenic
GGATAATGTTGTGGGGATTC+TGG 0.188997 1_3:-3976443 Msa0098050:CDS
TGTTCTTCGCTTGATAAATT+AGG 0.196978 1_3:-3976585 Msa0098050:CDS
AGTCTAGTCCCGTGAATTTC+AGG 0.205315 1_3:+3977258 None:intergenic
TCTTTCTCTTTCTTATTATT+GGG 0.218010 1_3:-3976126 Msa0098050:three_prime_UTR
CTCGCGGACACTGCATCTTC+TGG 0.228113 1_3:-3976992 Msa0098050:CDS
TGTTCTGCAAATAAATAAAA+TGG 0.238921 1_3:-3976056 Msa0098050:three_prime_UTR
CCAATTATCATTCAAAACTA+TGG 0.244044 1_3:+3981262 None:intergenic
CTTGATAAATTAGGTATTCT+TGG 0.245839 1_3:-3976576 Msa0098050:CDS
ACTGCTTTAGTTCGAATATA+TGG 0.257375 1_3:-3979374 Msa0098050:CDS
AAGGTAAAGGAATGATTCTT+TGG 0.262620 1_3:+3981399 None:intergenic
GGTAAAATTGTTCCAAAGTC+TGG 0.267756 1_3:-3979494 Msa0098050:CDS
GTATTCTTGGTTTACCGATA+TGG 0.275610 1_3:-3976563 Msa0098050:CDS
AAAGCAGCCAACAAAGATTA+TGG 0.278671 1_3:-3977856 Msa0098050:CDS
ATAGATTAGGCAAAGATATA+AGG 0.281339 1_3:-3976809 Msa0098050:CDS
AGGTGTAAATTTGATGTATT+CGG 0.281990 1_3:-3980297 Msa0098050:CDS
TATTTAGAGGGACCTCCTTC+TGG 0.284245 1_3:-3978910 Msa0098050:CDS
ATTCATTTAATCCCAAAGTT+TGG 0.284601 1_3:-3981232 Msa0098050:five_prime_UTR
TCCTTGTGAAACACTTCAAC+TGG 0.287746 1_3:-3977127 Msa0098050:CDS
TGGTTCTGCTTACACGGTTT+CGG 0.290637 1_3:-3980195 Msa0098050:CDS
TATATTCAAGGTCCAGCTTC+TGG 0.294775 1_3:-3977831 Msa0098050:CDS
GCTTGGGTCCGGATTGGTTC+TGG 0.294793 1_3:-3977999 Msa0098050:CDS
TTGAGGATGGCCTGAATAAT+TGG 0.299999 1_3:-3979562 Msa0098050:CDS
AGATGCAGTGTCCGCGAGTT+TGG 0.301967 1_3:+3976997 None:intergenic
CAGGGAAAATTCCTTCTAAA+TGG 0.303874 1_3:-3978955 Msa0098050:CDS
CAACAGAACGAACACAATTC+TGG 0.313115 1_3:-3979454 Msa0098050:CDS
TTAACTTGCACCATGGTGTT+AGG 0.315260 1_3:+3977224 None:intergenic
GCAAAATATTTCCCAGACTT+TGG 0.322421 1_3:+3979482 None:intergenic
GCTACAAATTATTTGTTCAT+TGG 0.326978 1_3:-3980095 Msa0098050:CDS
TTCTTCCAGACCAATTATTC+AGG 0.328653 1_3:+3979552 None:intergenic
AAATATCATAATCCAAACTT+TGG 0.332166 1_3:+3981220 None:intergenic
ATATTAATGAAGCTGGAAAA+AGG 0.336260 1_3:-3976371 Msa0098050:CDS
AGCTTCTGGTGTAGACTTAA+TGG 0.340829 1_3:-3977817 Msa0098050:CDS
GATTAAATAGATTAATAAAT+CGG 0.346089 1_3:+3981428 None:intergenic
TATCTTTGCCTAATCTATCT+TGG 0.348489 1_3:+3976814 None:intergenic
CAAAGCGGTCCTTTATTTAG+AGG 0.352566 1_3:-3978923 Msa0098050:CDS
AATCTTGCATGTCTATCAAC+AGG 0.358717 1_3:+3977774 None:intergenic
AAGACATTCGTGCTTGATAA+AGG 0.359363 1_3:-3976219 Msa0098050:CDS
GTATGATATACGTTGTCATT+TGG 0.365712 1_3:+3979836 None:intergenic
GACTTATCAAGTATCTGCTT+GGG 0.366775 1_3:-3978015 Msa0098050:CDS
AATATCATAATCCAAACTTT+GGG 0.373763 1_3:+3981221 None:intergenic
CGACATTCTTGTTAATACTT+TGG 0.374970 1_3:-3978884 Msa0098050:CDS
AAGATTATGGTTTATATTCA+AGG 0.377953 1_3:-3977843 Msa0098050:CDS
ATATAAACCATAATCTTTGT+TGG 0.377974 1_3:+3977849 None:intergenic
GATAATGTTGTGGGGATTCT+GGG 0.382110 1_3:-3976442 Msa0098050:CDS
GGTGTAGACTTAATGGTTGC+CGG 0.385838 1_3:-3977810 Msa0098050:CDS
GGTGCACCAGTAGGTGGAAT+TGG 0.386421 1_3:-3976648 Msa0098050:CDS
GGAATTCAGCAGGAGATAAC+TGG 0.386735 1_3:-3979428 Msa0098050:CDS
CAAATGAGTTGAAGTGGTAT+TGG 0.389711 1_3:-3977094 Msa0098050:CDS
CATAATAAACCCACAATTTG+AGG 0.389860 1_3:-3979579 Msa0098050:CDS
GATGATAGATGGCATGAAAT+TGG 0.390386 1_3:-3977897 Msa0098050:CDS
CTACAGAACTTCTGTTATGA+AGG 0.391792 1_3:-3979987 Msa0098050:intron
GAACAAACGACAGGCCCAAC+TGG 0.393175 1_3:+3976603 None:intergenic
TGGATGAGGGGCCATTTAGA+AGG 0.400067 1_3:+3978944 None:intergenic
CTGGGAGTTGTTTATGAGTA+GGG 0.400841 1_3:-3976424 Msa0098050:CDS
TACACCTTGATCACCTGCTT+TGG 0.402831 1_3:+3980313 None:intergenic
AAGGAGGTCCCTCTAAATAA+AGG 0.403472 1_3:+3978914 None:intergenic
CGGATTGGTTCTGGTTCAAA+TGG 0.403976 1_3:-3977990 Msa0098050:CDS
CTTCTGTTATGAAGGGTAGC+TGG 0.404922 1_3:-3979979 Msa0098050:CDS
TGACTTATCAAGTATCTGCT+TGG 0.409021 1_3:-3978016 Msa0098050:CDS
ATGATCTTGAAGTTATGCTT+AGG 0.411794 1_3:-3976494 Msa0098050:CDS
GAAGGGTAGCTGGGAAAAGT+TGG 0.414542 1_3:-3979969 Msa0098050:CDS
GACCTTGCCAGCATTCGTTT+CGG 0.423092 1_3:+3980249 None:intergenic
GAAGCCCGGATACTCCAAAA+TGG 0.423397 1_3:-3976016 None:intergenic
ATCAAGTATCTGCTTGGGTC+CGG 0.425041 1_3:-3978010 Msa0098050:CDS
GAGTCAGAAGACTGGTTAAT+CGG 0.426105 1_3:+3976898 None:intergenic
GAGTAGGGATAATGCGCATT+TGG 0.427982 1_3:-3976409 Msa0098050:CDS
GATCTCCGAGAGCAGTATAT+AGG 0.429907 1_3:-3979299 Msa0098050:CDS
TGCACTTTAACTCTTAAATC+CGG 0.430884 1_3:-3978182 Msa0098050:CDS
AATTGAGATGCCAAGAGTTC+AGG 0.433547 1_3:+3980360 None:intergenic
TTTATTAATCTATTTAATCA+AGG 0.434121 1_3:-3981424 Msa0098050:five_prime_UTR
GAAGGTGATATTAATGAAGC+TGG 0.437237 1_3:-3976378 Msa0098050:CDS
TCTGGGAGTTGTTTATGAGT+AGG 0.438626 1_3:-3976425 Msa0098050:CDS
CCGAGGTTTCAGATGATAGA+TGG 0.439585 1_3:-3977908 Msa0098050:CDS
CTTATAAGCAAGTCAATTCC+AGG 0.441038 1_3:+3979884 None:intergenic
ATGGCTCACCCTGCTGTTGA+AGG 0.441932 1_3:-3976465 Msa0098050:CDS
TCGCGGACACTGCATCTTCT+GGG 0.447820 1_3:-3976991 Msa0098050:CDS
AACTTGGATGGGTCCTGCTC+AGG 0.448950 1_3:-3978066 Msa0098050:CDS
CCGATGTACGAGCTACTTTG+TGG 0.450712 1_3:-3979334 Msa0098050:CDS
AAATAAAATACAACCCGATC+GGG 0.455406 1_3:+3979920 None:intergenic
AATCAATTGACACCTCCATT+GGG 0.455457 1_3:+3976190 None:intergenic
TAATTCAAATTCCCTTGTTG+TGG 0.456285 1_3:+3977065 None:intergenic
ATATACTGCTCTCGGAGATC+TGG 0.456294 1_3:+3979302 None:intergenic
TAGATTAGGCAAAGATATAA+GGG 0.456329 1_3:-3976808 Msa0098050:CDS
TACAGATTGGGTGACGCTGC+AGG 0.458097 1_3:-3978974 Msa0098050:CDS
TATTTGGAAGGACCTGCTCC+TGG 0.458649 1_3:-3979902 Msa0098050:CDS
TGCAGGGAACCGATACAGAT+TGG 0.460115 1_3:-3978987 Msa0098050:CDS
TGGAGTATCCGACCTTTCTC+AGG 0.461041 1_3:-3980165 Msa0098050:CDS
CTCTAAATAAAGGACCGCTT+TGG 0.461695 1_3:+3978924 None:intergenic
TCAAGTTCTGTAAACCATAT+CGG 0.462220 1_3:+3976549 None:intergenic
TCAGGCCATCCTCAAATTGT+GGG 0.462609 1_3:+3979570 None:intergenic
ACAAATTATTTGTTCATTGG+AGG 0.463668 1_3:-3980092 Msa0098050:CDS
CAGTCTTCTGACTCGCTACA+AGG 0.465425 1_3:-3976889 Msa0098050:CDS
AACAGGGAAAATTTGAAGTC+CGG 0.469589 1_3:+3977791 None:intergenic
AAATCAATTGACACCTCCAT+TGG 0.470910 1_3:+3976189 None:intergenic
TCTCAAATGACCTGAACTCT+TGG 0.471487 1_3:-3980370 Msa0098050:CDS
GCCATTGGTGGAAGTATATG+AGG 0.473608 1_3:+3978155 None:intergenic
TAAAGGACCGCTTTGGATGA+GGG 0.474678 1_3:+3978931 None:intergenic
TTCTGTTATGAAGGGTAGCT+GGG 0.476279 1_3:-3979978 Msa0098050:CDS
TAATAGAACACAAACTTGGA+TGG 0.479975 1_3:-3978078 Msa0098050:CDS
AATCTTTCTGATGATACAAA+AGG 0.480154 1_3:-3978224 Msa0098050:CDS
TTCAGGCCATCCTCAAATTG+TGG 0.482816 1_3:+3979569 None:intergenic
AAAAGTCCAACCTGTGCAGC+TGG 0.483187 1_3:+3978823 None:intergenic
TACTTCTTGGCTATGAAGCC+CGG 0.483306 1_3:-3976030 Msa0098050:three_prime_UTR
TGAATTCCAATTCCACCTAC+TGG 0.483936 1_3:+3976642 None:intergenic
ATAAAGGACCGCTTTGGATG+AGG 0.485822 1_3:+3978930 None:intergenic
TAACTTGCACCATGGTGTTA+GGG 0.487820 1_3:+3977225 None:intergenic
ACAGAAACATGTGTTTCTAC+TGG 0.488657 1_3:-3979614 Msa0098050:CDS
TGGACGTGTGCAGCGCAAGC+TGG 0.489540 1_3:-3979408 Msa0098050:CDS
AACATTATCCCTTCAACAGC+AGG 0.489684 1_3:+3976456 None:intergenic
ACACAGAACGATTTCCCGAT+TGG 0.490031 1_3:-3977197 Msa0098050:CDS
AGAGAATCTCTTGCCATTGG+TGG 0.492478 1_3:+3978143 None:intergenic
CCACTGATTGTCAGCGCCAA+GGG 0.492864 1_3:+3977947 None:intergenic
TAAGTAAAGATCAAAGGTAA+AGG 0.495001 1_3:+3981386 None:intergenic
TGGAAGTATATGAGGAGAAC+CGG 0.495790 1_3:+3978163 None:intergenic
GTATCTGCTTGGGTCCGGAT+TGG 0.496695 1_3:-3978005 Msa0098050:CDS
TGATCTTGAAGTTATGCTTA+GGG 0.496879 1_3:-3976493 Msa0098050:CDS
CAAGTATGTAGCGGCCACTT+AGG 0.497787 1_3:+3978105 None:intergenic
GTAGGTGGAATTGGAATTCA+AGG 0.497831 1_3:-3976639 Msa0098050:CDS
GTAAAATTGTTCCAAAGTCT+GGG 0.498320 1_3:-3979493 Msa0098050:CDS
ACACTGCATCTTCTGGGAAG+TGG 0.498790 1_3:-3976985 Msa0098050:CDS
TTCGACACCACCAGCTGCAC+AGG 0.498795 1_3:-3978833 Msa0098050:intron
TGGCATCTCAATTGCTGCAA+TGG 0.499335 1_3:-3980350 Msa0098050:CDS
AGCAAGTCAATTCCAGGAGC+AGG 0.502349 1_3:+3979890 None:intergenic
CTGCTGATGCATGTTCCAAT+CGG 0.505222 1_3:+3977182 None:intergenic
TGCTGATGCATGTTCCAATC+GGG 0.506348 1_3:+3977183 None:intergenic
TTCCATTGGTTCTGCTTACA+CGG 0.506731 1_3:-3980201 Msa0098050:CDS
GAAATCTCACTCTCACTCTC+AGG 0.509622 1_3:-3981052 Msa0098050:intron
CAAATTATTTGTTCATTGGA+GGG 0.512221 1_3:-3980091 Msa0098050:intron
TCACCGACCGAAACGAATGC+TGG 0.517919 1_3:-3980256 Msa0098050:CDS
CGTTACTCGCAAATTTGAGT+GGG 0.518510 1_3:-3981152 Msa0098050:five_prime_UTR
ATATACGTTGTCATTTGGAA+TGG 0.520996 1_3:+3979841 None:intergenic
AATGATTATCATATTGAAGA+TGG 0.521478 1_3:-3976732 Msa0098050:CDS
CAATTATCATTCAAAACTAT+GGG 0.521910 1_3:+3981263 None:intergenic
GCAGGGAACCGATACAGATT+GGG 0.524439 1_3:-3978986 Msa0098050:CDS
GATGGCCTGAATAATTGGTC+TGG 0.525772 1_3:-3979557 Msa0098050:CDS
GCTGACAATCAGTGGATCAA+TGG 0.526079 1_3:-3977939 Msa0098050:CDS
TAACTAATAGAACACAAACT+TGG 0.526101 1_3:-3978082 Msa0098050:CDS
TTCTCGGTGATCACCTGAGC+AGG 0.526932 1_3:+3978053 None:intergenic
AAAGCGGTCCTTTATTTAGA+GGG 0.527863 1_3:-3978922 Msa0098050:CDS
CACTGTCGACTAAACCCGAT+CGG 0.527900 1_3:-3979934 Msa0098050:CDS
CATTTGAACCAGAACCAATC+CGG 0.530614 1_3:+3977991 None:intergenic
TCGTCCAAAGCAGGTGATCA+AGG 0.532341 1_3:-3980317 Msa0098050:CDS
CAAATAAAATACAACCCGAT+CGG 0.533364 1_3:+3979919 None:intergenic
AACTAAAGCAGTGATCTCAT+AGG 0.538606 1_3:+3979385 None:intergenic
TTAGCAGCATTGCTCTCACT+TGG 0.539811 1_3:+3980413 None:intergenic
CCATCTATCATCTGAAACCT+CGG 0.542182 1_3:+3977908 None:intergenic
ATAATGGCAGGAAACATCTC+TGG 0.543211 1_3:-3980437 Msa0098050:CDS
ACTGTCGACTAAACCCGATC+GGG 0.543731 1_3:-3979933 Msa0098050:CDS
AGAGATTCTCTTGGACCTCA+CGG 0.543735 1_3:-3978131 Msa0098050:CDS
CGATGTACGAGCTACTTTGT+GGG 0.544129 1_3:-3979333 Msa0098050:CDS
CCAAGAGAATCTCTTGCCAT+TGG 0.545862 1_3:+3978140 None:intergenic
CAAGGTCAATTCAACTTCAG+AGG 0.546491 1_3:-3976294 Msa0098050:CDS
CATCAGCAGATTCCTGAGAA+AGG 0.546491 1_3:+3980153 None:intergenic
CCCTTGGCGCTGACAATCAG+TGG 0.546637 1_3:-3977947 Msa0098050:CDS
TATGTAATTTCGTCCAAAGC+AGG 0.547223 1_3:-3980326 Msa0098050:CDS
GATTGTGTTGCATGATTCCA+TGG 0.547938 1_3:-3979522 Msa0098050:CDS
CAATGCCTATATACTGCTCT+CGG 0.551465 1_3:+3979294 None:intergenic
GATGTTGTCCTGAAATTCAC+GGG 0.552954 1_3:-3977266 Msa0098050:CDS
ATCACAGACAGAATTTCCAT+TGG 0.553945 1_3:-3980215 Msa0098050:CDS
CAGCGTCACCCAATCTGTAT+CGG 0.554751 1_3:+3978978 None:intergenic
TGGTGTGTTCTAAAGTGTGC+AGG 0.554994 1_3:-3979004 Msa0098050:intron
ATTAAGTCTACACCAGAAGC+TGG 0.555364 1_3:+3977819 None:intergenic
ACAGATTGGGTGACGCTGCA+GGG 0.562053 1_3:-3978973 Msa0098050:CDS
ATTCTGGAATGGAATTCAGC+AGG 0.562599 1_3:-3979438 Msa0098050:CDS
GACACATAGATAGTCCAGTT+GGG 0.564049 1_3:-3976617 Msa0098050:CDS
TACTCGCAAATTTGAGTGGG+GGG 0.565337 1_3:-3981149 Msa0098050:five_prime_UTR
TGTTGAAGGGATAATGTTGT+GGG 0.565574 1_3:-3976451 Msa0098050:CDS
GAGATTTCTTATGTTTCGAG+TGG 0.565861 1_3:+3981067 None:intergenic
TATATAGTTAATGCATGAAG+AGG 0.566208 1_3:-3981122 Msa0098050:exon
AGATTTCTTATGTTTCGAGT+GGG 0.566960 1_3:+3981068 None:intergenic
TTCTAGCTTTGAAACAAGAG+TGG 0.568232 1_3:-3976347 Msa0098050:CDS
GAACGAACACAATTCTGGAA+TGG 0.568651 1_3:-3979449 Msa0098050:CDS
CTGTTGAAGGGATAATGTTG+TGG 0.569366 1_3:-3976452 Msa0098050:CDS
TGATGTTGTCCTGAAATTCA+CGG 0.569487 1_3:-3977267 Msa0098050:CDS
TGCATCTTCTGGGAAGTGGA+TGG 0.570497 1_3:-3976981 Msa0098050:CDS
CCCAGTTGAAGTGTTTCACA+AGG 0.574593 1_3:+3977126 None:intergenic
CATGGTCATGTTGATGAACA+AGG 0.575070 1_3:-3976312 Msa0098050:CDS
CAAAATGTGAATGTTGCCCT+TGG 0.576433 1_3:-3977963 Msa0098050:CDS
TCCACTGATTGTCAGCGCCA+AGG 0.576601 1_3:+3977946 None:intergenic
TACAGAACTTCTGTTATGAA+GGG 0.577471 1_3:-3979986 Msa0098050:intron
TTACTCGCAAATTTGAGTGG+GGG 0.579610 1_3:-3981150 Msa0098050:five_prime_UTR
AATAGAACACAAACTTGGAT+GGG 0.580771 1_3:-3978077 Msa0098050:CDS
AATACTTGAATTGAAATGAA+AGG 0.581169 1_3:+3981358 None:intergenic
GCGTTACTCGCAAATTTGAG+TGG 0.582694 1_3:-3981153 Msa0098050:five_prime_UTR
TTTCTGATGATACAAAAGGA+TGG 0.583068 1_3:-3978220 Msa0098050:CDS
GCGAAGTAAGTAAAGATCAA+AGG 0.583633 1_3:+3981380 None:intergenic
CCAATGGCAAGAGATTCTCT+TGG 0.584474 1_3:-3978140 Msa0098050:CDS
ATTCTTGATTTGCAAGAACA+AGG 0.585580 1_3:-3976669 Msa0098050:CDS
ACACAAGGTTAAAAGATCAT+CGG 0.586038 1_3:+3977034 None:intergenic
AGCAGATTCCTGAGAAAGGT+CGG 0.586373 1_3:+3980157 None:intergenic
TCCTCATATACTTCCACCAA+TGG 0.587699 1_3:-3978156 Msa0098050:CDS
ATGTAGCGGACGGATCTAGT+TGG 0.589460 1_3:+3976763 None:intergenic
ACAAAAGGATGGTTTCCACT+TGG 0.589690 1_3:-3978209 Msa0098050:CDS
TGGCTCACCCTGCTGTTGAA+GGG 0.590829 1_3:-3976464 Msa0098050:CDS
GACCGAAACGAATGCTGGCA+AGG 0.591612 1_3:-3980251 Msa0098050:CDS
AAAGGACCGCTTTGGATGAG+GGG 0.593030 1_3:+3978932 None:intergenic
CCTTGTGAAACACTTCAACT+GGG 0.594599 1_3:-3977126 Msa0098050:CDS
AGTTATGCTTAGGGAAGCCA+TGG 0.595340 1_3:-3976484 Msa0098050:CDS
ACAAGAATGTCGGTGCCAGA+AGG 0.599405 1_3:+3978895 None:intergenic
CCACAAAGTAGCTCGTACAT+CGG 0.600541 1_3:+3979334 None:intergenic
GGACACATAGATAGTCCAGT+TGG 0.600637 1_3:-3976618 Msa0098050:CDS
TTCAACAGCAGGGTGAGCCA+TGG 0.602273 1_3:+3976467 None:intergenic
AACCGTGTAAGCAGAACCAA+TGG 0.602847 1_3:+3980199 None:intergenic
TGATAAAGGTGACTCCCCAA+TGG 0.604356 1_3:-3976205 Msa0098050:CDS
TTGCCAGCATTCGTTTCGGT+CGG 0.605263 1_3:+3980253 None:intergenic
TGGATGGAACTGTTCAGCAA+TGG 0.607765 1_3:-3976965 Msa0098050:CDS
TATTGGACTGAGCCACAACA+AGG 0.608767 1_3:-3977077 Msa0098050:CDS
TGTGCAGCTGGTGGTGTCGA+AGG 0.611606 1_3:+3978835 None:intergenic
CAAAGTATTAACAAGAATGT+CGG 0.612075 1_3:+3978885 None:intergenic
ATAAACCCACAATTTGAGGA+TGG 0.616157 1_3:-3979575 Msa0098050:CDS
AGAATGTCGGTGCCAGAAGG+AGG 0.617068 1_3:+3978898 None:intergenic
GAACAAGGTGCACCAGTAGG+TGG 0.617864 1_3:-3976654 Msa0098050:CDS
GATAGATGGCATGAAATTGG+TGG 0.618322 1_3:-3977894 Msa0098050:CDS
TGTTTGCAAATGAGTTGAAG+TGG 0.620891 1_3:-3977100 Msa0098050:CDS
GGACCTCACGGAATCCTAAG+TGG 0.625715 1_3:-3978119 Msa0098050:CDS
GTTACTCGCAAATTTGAGTG+GGG 0.627193 1_3:-3981151 Msa0098050:five_prime_UTR
CTTGTAGCGAGTCAGAAGAC+TGG 0.627289 1_3:+3976890 None:intergenic
TTCACAAACAATGTAGCGGA+CGG 0.628115 1_3:+3976753 None:intergenic
CAAGAACAAGGTGCACCAGT+AGG 0.631924 1_3:-3976657 Msa0098050:CDS
TCAAGCGAAGAACAAACGAC+AGG 0.636980 1_3:+3976594 None:intergenic
GAGTGGCTATCTCACAGTCA+TGG 0.637603 1_3:-3976330 Msa0098050:CDS
GACAATCAGTGGATCAATGG+AGG 0.638760 1_3:-3977936 Msa0098050:CDS
ATCATTCACAAACAATGTAG+CGG 0.639829 1_3:+3976749 None:intergenic
GTTAAAGTGCAATTACCAAG+TGG 0.640452 1_3:+3978194 None:intergenic
ATCAATTGACACCTCCATTG+GGG 0.643205 1_3:+3976191 None:intergenic
GCAGCTGGTGGTGTCGAAGG+AGG 0.648412 1_3:+3978838 None:intergenic
GCGCATTTGGTGAATGCAGA+AGG 0.652044 1_3:-3976396 Msa0098050:CDS
TTTAAAGATGCAGACAGACA+AGG 0.654021 1_3:-3977745 Msa0098050:intron
TGTTTGTTTAACTTGCACCA+TGG 0.656740 1_3:+3977217 None:intergenic
GGTGTGTTCTAAAGTGTGCA+GGG 0.657239 1_3:-3979003 Msa0098050:intron
AGTCTTCTGACTCGCTACAA+GGG 0.658164 1_3:-3976888 Msa0098050:CDS
GGTAGCTGGGAAAAGTTGGA+AGG 0.662560 1_3:-3979965 Msa0098050:CDS
TTGCATGATTCCATGGCAGA+TGG 0.665285 1_3:-3979515 Msa0098050:CDS
TAAAGGTGACTCCCCAATGG+AGG 0.666453 1_3:-3976202 Msa0098050:CDS
TATTAGTTACAAGTATGTAG+CGG 0.676314 1_3:+3978096 None:intergenic
ATCTTGCATGTCTATCAACA+GGG 0.678115 1_3:+3977775 None:intergenic
GTTAACAATGAAATGCTGCA+TGG 0.679600 1_3:-3976846 Msa0098050:CDS
ACATTATCCCTTCAACAGCA+GGG 0.679952 1_3:+3976457 None:intergenic
TCTATGAATGAATATGTGAG+AGG 0.691709 1_3:-3976519 Msa0098050:CDS
AGTCCAACCTGTGCAGCTGG+TGG 0.701591 1_3:+3978826 None:intergenic
GTTGAAGGGATAATGTTGTG+GGG 0.711478 1_3:-3976450 Msa0098050:CDS
AAGTACAAGATCCAAACTCG+CGG 0.714282 1_3:-3977008 Msa0098050:CDS
GATCAATGGAGGACAAACCG+AGG 0.714432 1_3:-3977925 Msa0098050:CDS
ATTGGACTGAGCCACAACAA+GGG 0.716874 1_3:-3977076 Msa0098050:CDS
AAATGGCCCCTCATCCAAAG+CGG 0.728507 1_3:-3978938 Msa0098050:CDS
CGGCCACTTAGGATTCCGTG+AGG 0.735169 1_3:+3978116 None:intergenic
TAGCAGCTACCCTAACACCA+TGG 0.737080 1_3:-3977234 Msa0098050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTAAATAGATTAATAAAT+CGG + chr1_3:3976029-3976048 None:intergenic 10.0%
!! TTTATTAATCTATTTAATCA+AGG - chr1_3:3976030-3976049 Msa0098050:three_prime_UTR 10.0%
!!! ATATTTTTTGAATATTTTTG+GGG + chr1_3:3976164-3976183 None:intergenic 10.0%
!!! GAATATTTTTTGAATATTTT+TGG + chr1_3:3976166-3976185 None:intergenic 10.0%
!! AAAATAAAATAAATTGTTAG+AGG + chr1_3:3979170-3979189 None:intergenic 10.0%
!!! TATTTTTTGAATATTTTTGG+GGG + chr1_3:3976163-3976182 None:intergenic 15.0%
!!! TCATTTTTTCAAATTATTAC+CGG + chr1_3:3976851-3976870 None:intergenic 15.0%
!! AACTAGATAAAAATAACAAA+AGG - chr1_3:3978340-3978359 Msa0098050:intron 15.0%
!! AAATTATCTGTAATTTACAT+TGG - chr1_3:3978657-3978676 Msa0098050:intron 15.0%
!!! ATTTTACATTCTTTATTGAT+AGG - chr1_3:3979786-3979805 Msa0098050:intron 15.0%
!! AATACTTGAATTGAAATGAA+AGG + chr1_3:3976099-3976118 None:intergenic 20.0%
!!! ATTTTTTGAATATTTTTGGG+GGG + chr1_3:3976162-3976181 None:intergenic 20.0%
!! CAATTATCATTCAAAACTAT+GGG + chr1_3:3976194-3976213 None:intergenic 20.0%
!! AATATCATAATCCAAACTTT+GGG + chr1_3:3976236-3976255 None:intergenic 20.0%
!! AAATATCATAATCCAAACTT+TGG + chr1_3:3976237-3976256 None:intergenic 20.0%
!! TTGGATTATGATATTTGAAT+TGG - chr1_3:3976241-3976260 Msa0098050:CDS 20.0%
!! ATTATGATATTTGAATTGGA+AGG - chr1_3:3976245-3976264 Msa0098050:CDS 20.0%
!! AGAATCTTAAAAAATAACTG+AGG + chr1_3:3976447-3976466 None:intergenic 20.0%
!!! AAATTACAAAGTCTGAAATA+TGG + chr1_3:3976540-3976559 None:intergenic 20.0%
!!! TGTTTTTTTTTGACAGATAA+TGG - chr1_3:3977001-3977020 Msa0098050:CDS 20.0%
!!! TCTATCTTTTAAAGAAATTG+AGG - chr1_3:3977414-3977433 Msa0098050:intron 20.0%
!! AATCTAAACCTTAACATTTA+TGG - chr1_3:3978410-3978429 Msa0098050:intron 20.0%
!! CTTGTCATATAAGTATTTAT+TGG - chr1_3:3978891-3978910 Msa0098050:CDS 20.0%
!!! CAAAAATAGCTTTAATTTCT+CGG + chr1_3:3979420-3979439 None:intergenic 20.0%
!! ATATAAACCATAATCTTTGT+TGG + chr1_3:3979608-3979627 None:intergenic 20.0%
!! AAGATTATGGTTTATATTCA+AGG - chr1_3:3979611-3979630 Msa0098050:CDS 20.0%
!! CTAATATATTCTTTCTTCAT+TGG - chr1_3:3979889-3979908 Msa0098050:CDS 20.0%
!! ATAGAAATACACATATCAAA+AGG + chr1_3:3980077-3980096 None:intergenic 20.0%
!! GAATAAAAATGATTTGATGA+CGG - chr1_3:3980523-3980542 Msa0098050:intron 20.0%
!! AATGATTATCATATTGAAGA+TGG - chr1_3:3980722-3980741 Msa0098050:intron 20.0%
!! ATGTGTTCAATGTATTTATT+TGG + chr1_3:3980767-3980786 None:intergenic 20.0%
!!! ATTTTATGGAACATATAATG+TGG - chr1_3:3981183-3981202 Msa0098050:five_prime_UTR 20.0%
!! TTCTTTCTCTTTCTTATTAT+TGG - chr1_3:3981327-3981346 Msa0098050:five_prime_UTR 20.0%
!! TCTTTCTCTTTCTTATTATT+GGG - chr1_3:3981328-3981347 Msa0098050:five_prime_UTR 20.0%
!! TGTTCTGCAAATAAATAAAA+TGG - chr1_3:3981398-3981417 Msa0098050:five_prime_UTR 20.0%
!!! AATAAAATGGTTTTACTTCT+TGG - chr1_3:3981411-3981430 Msa0098050:five_prime_UTR 20.0%
! TAAGTAAAGATCAAAGGTAA+AGG + chr1_3:3976071-3976090 None:intergenic 25.0%
!!! TTTTTTGAATATTTTTGGGG+GGG + chr1_3:3976161-3976180 None:intergenic 25.0%
! CCAATTATCATTCAAAACTA+TGG + chr1_3:3976195-3976214 None:intergenic 25.0%
!!! CCATAGTTTTGAATGATAAT+TGG - chr1_3:3976192-3976211 Msa0098050:CDS 25.0%
! ATTCATTTAATCCCAAAGTT+TGG - chr1_3:3976222-3976241 Msa0098050:CDS 25.0%
! TATATAGTTAATGCATGAAG+AGG - chr1_3:3976332-3976351 Msa0098050:CDS 25.0%
! TCTTAAAAAATAACTGAGGA+GGG + chr1_3:3976443-3976462 None:intergenic 25.0%
! ATCTTAAAAAATAACTGAGG+AGG + chr1_3:3976444-3976463 None:intergenic 25.0%
! ATGTGATGTATAATGCTTAA+TGG - chr1_3:3976717-3976736 Msa0098050:CDS 25.0%
! TAAGGAAAATAGTTTCTTCT+TGG - chr1_3:3976952-3976971 Msa0098050:CDS 25.0%
! AGGTGTAAATTTGATGTATT+CGG - chr1_3:3977157-3977176 Msa0098050:CDS 25.0%
! GCTACAAATTATTTGTTCAT+TGG - chr1_3:3977359-3977378 Msa0098050:intron 25.0%
! ACAAATTATTTGTTCATTGG+AGG - chr1_3:3977362-3977381 Msa0098050:intron 25.0%
! CAAATTATTTGTTCATTGGA+GGG - chr1_3:3977363-3977382 Msa0098050:intron 25.0%
! AAATAATGGTGAACATGTAA+GGG + chr1_3:3977446-3977465 None:intergenic 25.0%
! AAAATAATGGTGAACATGTA+AGG + chr1_3:3977447-3977466 None:intergenic 25.0%
! AGAAGTTCTGTAGAAAATAA+TGG + chr1_3:3977460-3977479 None:intergenic 25.0%
!!! CAGATACTGTTATTTCTTTA+TGG - chr1_3:3977657-3977676 Msa0098050:intron 25.0%
! TCTTTATGGAATTCTACATA+TGG - chr1_3:3977671-3977690 Msa0098050:intron 25.0%
! TTAAAGAGTGAAACCATAAT+AGG + chr1_3:3977744-3977763 None:intergenic 25.0%
!!! TGTTTTAATAACACACTAAC+TGG - chr1_3:3977782-3977801 Msa0098050:CDS 25.0%
!! AAGAGTCAATCTAAAATTCA+TGG + chr1_3:3978287-3978306 None:intergenic 25.0%
! AACAACTACCATAAATGTTA+AGG + chr1_3:3978421-3978440 None:intergenic 25.0%
!! CAAAGTATTAACAAGAATGT+CGG + chr1_3:3978572-3978591 None:intergenic 25.0%
! AATAAGCTAAAAACAGCTTA+TGG - chr1_3:3979007-3979026 Msa0098050:intron 25.0%
!!! TAAAAACTTGTTAGACTGTT+TGG + chr1_3:3979063-3979082 None:intergenic 25.0%
! CAATATGAATCTGTTTGAAT+TGG + chr1_3:3979110-3979129 None:intergenic 25.0%
! AACAGATTCATATTGAACTT+CGG - chr1_3:3979115-3979134 Msa0098050:intron 25.0%
!!! ATTTTACAGAATGTTGCTTT+TGG - chr1_3:3979185-3979204 Msa0098050:intron 25.0%
! AATCTTTCTGATGATACAAA+AGG - chr1_3:3979230-3979249 Msa0098050:intron 25.0%
! TATTAGTTACAAGTATGTAG+CGG + chr1_3:3979361-3979380 None:intergenic 25.0%
! TAACTAATAGAACACAAACT+TGG - chr1_3:3979372-3979391 Msa0098050:CDS 25.0%
! TATATTCTTTCTTCATTGGT+AGG - chr1_3:3979893-3979912 Msa0098050:CDS 25.0%
! AATGCAAAATTGCTCTATTT+AGG + chr1_3:3980013-3980032 None:intergenic 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG - chr1_3:3980012-3980031 Msa0098050:intron 25.0%
!! TCATTTTACCAAGATAGATT+AGG - chr1_3:3980632-3980651 Msa0098050:intron 25.0%
! ATAGATTAGGCAAAGATATA+AGG - chr1_3:3980645-3980664 Msa0098050:intron 25.0%
! TAGATTAGGCAAAGATATAA+GGG - chr1_3:3980646-3980665 Msa0098050:intron 25.0%
! CTTGATAAATTAGGTATTCT+TGG - chr1_3:3980878-3980897 Msa0098050:intron 25.0%
! ATATTAATGAAGCTGGAAAA+AGG - chr1_3:3981083-3981102 Msa0098050:CDS 25.0%
AAGGTAAAGGAATGATTCTT+TGG + chr1_3:3976058-3976077 None:intergenic 30.0%
! TGAATTGGAAGGAAATTTTC+TGG - chr1_3:3976256-3976275 Msa0098050:CDS 30.0%
AGTAACGCCTAAGAAAAATT+GGG + chr1_3:3976289-3976308 None:intergenic 30.0%
! AGATTTCTTATGTTTCGAGT+GGG + chr1_3:3976389-3976408 None:intergenic 30.0%
AAAAAATGAAAGCGACTGAA+TGG - chr1_3:3976862-3976881 Msa0098050:CDS 30.0%
!!! TTTTTTTGACAGATAATGGC+AGG - chr1_3:3977005-3977024 Msa0098050:CDS 30.0%
TACAGAACTTCTGTTATGAA+GGG - chr1_3:3977468-3977487 Msa0098050:intron 30.0%
AAATAAAATACAACCCGATC+GGG + chr1_3:3977537-3977556 None:intergenic 30.0%
CAAATAAAATACAACCCGAT+CGG + chr1_3:3977538-3977557 None:intergenic 30.0%
! ATATACGTTGTCATTTGGAA+TGG + chr1_3:3977616-3977635 None:intergenic 30.0%
GTATGATATACGTTGTCATT+TGG + chr1_3:3977621-3977640 None:intergenic 30.0%
AACTTGTATTGAGCCTATTA+TGG - chr1_3:3977728-3977747 Msa0098050:intron 30.0%
!! ACTTCTGAAATATGACGAAA+AGG + chr1_3:3977812-3977831 None:intergenic 30.0%
CATAATAAACCCACAATTTG+AGG - chr1_3:3977875-3977894 Msa0098050:CDS 30.0%
GTAAAATTGTTCCAAAGTCT+GGG - chr1_3:3977961-3977980 Msa0098050:CDS 30.0%
! ACTGCTTTAGTTCGAATATA+TGG - chr1_3:3978080-3978099 Msa0098050:CDS 30.0%
!! GAATTTTAGATTGACTCTTG+AGG - chr1_3:3978288-3978307 Msa0098050:intron 30.0%
CGACATTCTTGTTAATACTT+TGG - chr1_3:3978570-3978589 Msa0098050:intron 30.0%
GTAGATTGATATGAGCTTAT+AGG + chr1_3:3978740-3978759 None:intergenic 30.0%
TCGTGCAAAACAAAAAAGTT+AGG + chr1_3:3978794-3978813 None:intergenic 30.0%
! ATTAAGTTGTCTATCGAAAC+CGG + chr1_3:3978850-3978869 None:intergenic 30.0%
TTTCTGATGATACAAAAGGA+TGG - chr1_3:3979234-3979253 Msa0098050:intron 30.0%
TGCACTTTAACTCTTAAATC+CGG - chr1_3:3979272-3979291 Msa0098050:intron 30.0%
TAATAGAACACAAACTTGGA+TGG - chr1_3:3979376-3979395 Msa0098050:CDS 30.0%
AATAGAACACAAACTTGGAT+GGG - chr1_3:3979377-3979396 Msa0098050:CDS 30.0%
TATCTTAACATGTGCCTTAA+GGG - chr1_3:3980103-3980122 Msa0098050:CDS 30.0%
TAATTCAAATTCCCTTGTTG+TGG + chr1_3:3980392-3980411 None:intergenic 30.0%
ACACAAGGTTAAAAGATCAT+CGG + chr1_3:3980423-3980442 None:intergenic 30.0%
TATCTTTGCCTAATCTATCT+TGG + chr1_3:3980643-3980662 None:intergenic 30.0%
ATCATTCACAAACAATGTAG+CGG + chr1_3:3980708-3980727 None:intergenic 30.0%
!! ATTCTTGATTTGCAAGAACA+AGG - chr1_3:3980785-3980804 Msa0098050:intron 30.0%
TGTTCTTCGCTTGATAAATT+AGG - chr1_3:3980869-3980888 Msa0098050:intron 30.0%
TCAAGTTCTGTAAACCATAT+CGG + chr1_3:3980908-3980927 None:intergenic 30.0%
TCTATGAATGAATATGTGAG+AGG - chr1_3:3980935-3980954 Msa0098050:intron 30.0%
ATGATCTTGAAGTTATGCTT+AGG - chr1_3:3980960-3980979 Msa0098050:intron 30.0%
TGATCTTGAAGTTATGCTTA+GGG - chr1_3:3980961-3980980 Msa0098050:intron 30.0%
! TTCAACTTCAGAGGATTTTA+TGG - chr1_3:3981169-3981188 Msa0098050:five_prime_UTR 30.0%
! GTCTTCGAAATTTTCTTTGA+TGG + chr1_3:3981220-3981239 None:intergenic 30.0%
GCGAAGTAAGTAAAGATCAA+AGG + chr1_3:3976077-3976096 None:intergenic 35.0%
!! TTGGAAGGAAATTTTCTGGT+TGG - chr1_3:3976260-3976279 Msa0098050:CDS 35.0%
! TTGGTCACCCAATTTTTCTT+AGG - chr1_3:3976279-3976298 Msa0098050:CDS 35.0%
GAGTAACGCCTAAGAAAAAT+TGG + chr1_3:3976290-3976309 None:intergenic 35.0%
GAGATTTCTTATGTTTCGAG+TGG + chr1_3:3976390-3976409 None:intergenic 35.0%
ATCATCCAATTTGATGAGAC+GGG + chr1_3:3976517-3976536 None:intergenic 35.0%
GATCATCCAATTTGATGAGA+CGG + chr1_3:3976518-3976537 None:intergenic 35.0%
! CTTTAAAAACAGGTCTGCAA+CGG + chr1_3:3976654-3976673 None:intergenic 35.0%
!! TACAGCGAAGCTTTAAAAAC+AGG + chr1_3:3976664-3976683 None:intergenic 35.0%
TGGTGCTTCATAGATTAACA+CGG + chr1_3:3976794-3976813 None:intergenic 35.0%
AGTCTCATCTATATCTGTGT+TGG + chr1_3:3976814-3976833 None:intergenic 35.0%
AACACAGATATAGATGAGAC+TGG - chr1_3:3976813-3976832 Msa0098050:CDS 35.0%
ACACAGATATAGATGAGACT+GGG - chr1_3:3976814-3976833 Msa0098050:CDS 35.0%
GCATCAACACTTCATATTGA+AGG + chr1_3:3976900-3976919 None:intergenic 35.0%
ACACACACACTAAACACTTA+AGG - chr1_3:3976934-3976953 Msa0098050:CDS 35.0%
TATGTAATTTCGTCCAAAGC+AGG - chr1_3:3977128-3977147 Msa0098050:CDS 35.0%
ATCACAGACAGAATTTCCAT+TGG - chr1_3:3977239-3977258 Msa0098050:CDS 35.0%
CTACAGAACTTCTGTTATGA+AGG - chr1_3:3977467-3977486 Msa0098050:intron 35.0%
!! CGATCGGGTTGTATTTTATT+TGG - chr1_3:3977536-3977555 Msa0098050:intron 35.0%
!! CGGGTTGTATTTTATTTGGA+AGG - chr1_3:3977540-3977559 Msa0098050:intron 35.0%
CTTATAAGCAAGTCAATTCC+AGG + chr1_3:3977573-3977592 None:intergenic 35.0%
! ACAGAAACATGTGTTTCTAC+TGG - chr1_3:3977840-3977859 Msa0098050:CDS 35.0%
ATAAACCCACAATTTGAGGA+TGG - chr1_3:3977879-3977898 Msa0098050:CDS 35.0%
TTCTTCCAGACCAATTATTC+AGG + chr1_3:3977905-3977924 None:intergenic 35.0%
! AACAATTTTACCATCTGCCA+TGG + chr1_3:3977952-3977971 None:intergenic 35.0%
GGTAAAATTGTTCCAAAGTC+TGG - chr1_3:3977960-3977979 Msa0098050:CDS 35.0%
GCAAAATATTTCCCAGACTT+TGG + chr1_3:3977975-3977994 None:intergenic 35.0%
AACTAAAGCAGTGATCTCAT+AGG + chr1_3:3978072-3978091 None:intergenic 35.0%
CAGGGAAAATTCCTTCTAAA+TGG - chr1_3:3978499-3978518 Msa0098050:intron 35.0%
! AAAGCGGTCCTTTATTTAGA+GGG - chr1_3:3978532-3978551 Msa0098050:intron 35.0%
! GGTTCGAGTATATTTTACGT+TGG + chr1_3:3978719-3978738 None:intergenic 35.0%
!!! TTTTTGTTTTGCACGAGCAT+TGG - chr1_3:3978798-3978817 Msa0098050:intron 35.0%
! TTAAGTTGTCTATCGAAACC+GGG + chr1_3:3978849-3978868 None:intergenic 35.0%
! GCTGTTTCAATATGCTATCT+TGG - chr1_3:3978972-3978991 Msa0098050:CDS 35.0%
GTTAAAGTGCAATTACCAAG+TGG + chr1_3:3979263-3979282 None:intergenic 35.0%
TGACTTATCAAGTATCTGCT+TGG - chr1_3:3979438-3979457 Msa0098050:CDS 35.0%
GACTTATCAAGTATCTGCTT+GGG - chr1_3:3979439-3979458 Msa0098050:CDS 35.0%
GATGATAGATGGCATGAAAT+TGG - chr1_3:3979557-3979576 Msa0098050:CDS 35.0%
!!! TGGCTGCTTTTCAATTCTAA+AGG + chr1_3:3979588-3979607 None:intergenic 35.0%
AAAGCAGCCAACAAAGATTA+TGG - chr1_3:3979598-3979617 Msa0098050:CDS 35.0%
! AACAGGGAAAATTTGAAGTC+CGG + chr1_3:3979666-3979685 None:intergenic 35.0%
ATCTTGCATGTCTATCAACA+GGG + chr1_3:3979682-3979701 None:intergenic 35.0%
AATCTTGCATGTCTATCAAC+AGG + chr1_3:3979683-3979702 None:intergenic 35.0%
TTTAAAGATGCAGACAGACA+AGG - chr1_3:3979709-3979728 Msa0098050:intron 35.0%
GTATCTTAACATGTGCCTTA+AGG - chr1_3:3980102-3980121 Msa0098050:CDS 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG + chr1_3:3980120-3980139 None:intergenic 35.0%
TGATGTTGTCCTGAAATTCA+CGG - chr1_3:3980187-3980206 Msa0098050:CDS 35.0%
!! TGTTTGTTTAACTTGCACCA+TGG + chr1_3:3980240-3980259 None:intergenic 35.0%
! TGTTTGCAAATGAGTTGAAG+TGG - chr1_3:3980354-3980373 Msa0098050:CDS 35.0%
! CAAATGAGTTGAAGTGGTAT+TGG - chr1_3:3980360-3980379 Msa0098050:CDS 35.0%
! GATCTTGTACTTTTGACACA+AGG + chr1_3:3980438-3980457 None:intergenic 35.0%
GTTAACAATGAAATGCTGCA+TGG - chr1_3:3980608-3980627 Msa0098050:intron 35.0%
GTATTCTTGGTTTACCGATA+TGG - chr1_3:3980891-3980910 Msa0098050:intron 35.0%
TGTTGAAGGGATAATGTTGT+GGG - chr1_3:3981003-3981022 Msa0098050:intron 35.0%
GAAGGTGATATTAATGAAGC+TGG - chr1_3:3981076-3981095 Msa0098050:CDS 35.0%
!! TTCTAGCTTTGAAACAAGAG+TGG - chr1_3:3981107-3981126 Msa0098050:CDS 35.0%
AAGACATTCGTGCTTGATAA+AGG - chr1_3:3981235-3981254 Msa0098050:five_prime_UTR 35.0%
AATCAATTGACACCTCCATT+GGG + chr1_3:3981267-3981286 None:intergenic 35.0%
AAATCAATTGACACCTCCAT+TGG + chr1_3:3981268-3981287 None:intergenic 35.0%
!!! TTTTGCTTTGGCTTGCAGAT+TGG + chr1_3:3976123-3976142 None:intergenic 40.0%
!!! TGAATATTTTTGGGGGGGTT+GGG + chr1_3:3976156-3976175 None:intergenic 40.0%
!!! TTGAATATTTTTGGGGGGGT+TGG + chr1_3:3976157-3976176 None:intergenic 40.0%
CGTTACTCGCAAATTTGAGT+GGG - chr1_3:3976302-3976321 Msa0098050:CDS 40.0%
GTTACTCGCAAATTTGAGTG+GGG - chr1_3:3976303-3976322 Msa0098050:CDS 40.0%
TTACTCGCAAATTTGAGTGG+GGG - chr1_3:3976304-3976323 Msa0098050:CDS 40.0%
CTGAGGAGGGTAAAAAAGTA+AGG + chr1_3:3976430-3976449 None:intergenic 40.0%
TAGACCGTCCAATCTTTGAT+AGG - chr1_3:3976583-3976602 Msa0098050:CDS 40.0%
! CTTCATATTGAAGGCGTGTT+CGG + chr1_3:3976891-3976910 None:intergenic 40.0%
ATAATGGCAGGAAACATCTC+TGG - chr1_3:3977017-3977036 Msa0098050:CDS 40.0%
TCTCAAATGACCTGAACTCT+TGG - chr1_3:3977084-3977103 Msa0098050:CDS 40.0%
AATTGAGATGCCAAGAGTTC+AGG + chr1_3:3977097-3977116 None:intergenic 40.0%
!! TTCCATTGGTTCTGCTTACA+CGG - chr1_3:3977253-3977272 Msa0098050:CDS 40.0%
TTCTGTTATGAAGGGTAGCT+GGG - chr1_3:3977476-3977495 Msa0098050:intron 40.0%
TTGAGGATGGCCTGAATAAT+TGG - chr1_3:3977892-3977911 Msa0098050:CDS 40.0%
GATTGTGTTGCATGATTCCA+TGG - chr1_3:3977932-3977951 Msa0098050:CDS 40.0%
CAACAGAACGAACACAATTC+TGG - chr1_3:3978000-3978019 Msa0098050:CDS 40.0%
! GAACGAACACAATTCTGGAA+TGG - chr1_3:3978005-3978024 Msa0098050:CDS 40.0%
!! ATTCTGGAATGGAATTCAGC+AGG - chr1_3:3978016-3978035 Msa0098050:CDS 40.0%
CAATGCCTATATACTGCTCT+CGG + chr1_3:3978163-3978182 None:intergenic 40.0%
TCGCTAATGCAGAAAACTCA+TGG + chr1_3:3978389-3978408 None:intergenic 40.0%
TGGTAGTTGTTGAACAATGC+TGG - chr1_3:3978430-3978449 Msa0098050:intron 40.0%
CTCTAAATAAAGGACCGCTT+TGG + chr1_3:3978533-3978552 None:intergenic 40.0%
! CAAAGCGGTCCTTTATTTAG+AGG - chr1_3:3978531-3978550 Msa0098050:intron 40.0%
AAGGAGGTCCCTCTAAATAA+AGG + chr1_3:3978543-3978562 None:intergenic 40.0%
GACTGTTTGGAAGAGCTAAT+GGG + chr1_3:3979050-3979069 None:intergenic 40.0%
AGACTGTTTGGAAGAGCTAA+TGG + chr1_3:3979051-3979070 None:intergenic 40.0%
ACAAAAGGATGGTTTCCACT+TGG - chr1_3:3979245-3979264 Msa0098050:intron 40.0%
! TGGAAGTATATGAGGAGAAC+CGG + chr1_3:3979294-3979313 None:intergenic 40.0%
TCCTCATATACTTCCACCAA+TGG - chr1_3:3979298-3979317 Msa0098050:CDS 40.0%
CATTTGAACCAGAACCAATC+CGG + chr1_3:3979466-3979485 None:intergenic 40.0%
! AGGGCAACATTCACATTTTG+TGG + chr1_3:3979491-3979510 None:intergenic 40.0%
CAAAATGTGAATGTTGCCCT+TGG - chr1_3:3979491-3979510 Msa0098050:CDS 40.0%
! CCATCTATCATCTGAAACCT+CGG + chr1_3:3979549-3979568 None:intergenic 40.0%
GATAGATGGCATGAAATTGG+TGG - chr1_3:3979560-3979579 Msa0098050:CDS 40.0%
TATATTCAAGGTCCAGCTTC+TGG - chr1_3:3979623-3979642 Msa0098050:CDS 40.0%
ATTAAGTCTACACCAGAAGC+TGG + chr1_3:3979638-3979657 None:intergenic 40.0%
AGCTTCTGGTGTAGACTTAA+TGG - chr1_3:3979637-3979656 Msa0098050:intron 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr1_3:3979972-3979991 Msa0098050:CDS 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr1_3:3979973-3979992 Msa0098050:CDS 40.0%
TTGCTTAACATGTGCCCTAA+GGG + chr1_3:3979990-3980009 None:intergenic 40.0%
! GTTTTTCCACACTGCAGATT+CGG - chr1_3:3980159-3980178 Msa0098050:CDS 40.0%
GATGTTGTCCTGAAATTCAC+GGG - chr1_3:3980188-3980207 Msa0098050:CDS 40.0%
! TAACTTGCACCATGGTGTTA+GGG + chr1_3:3980232-3980251 None:intergenic 40.0%
!! TTAACTTGCACCATGGTGTT+AGG + chr1_3:3980233-3980252 None:intergenic 40.0%
TCCTTGTGAAACACTTCAAC+TGG - chr1_3:3980327-3980346 Msa0098050:CDS 40.0%
CCTTGTGAAACACTTCAACT+GGG - chr1_3:3980328-3980347 Msa0098050:CDS 40.0%
AAGTACAAGATCCAAACTCG+CGG - chr1_3:3980446-3980465 Msa0098050:intron 40.0%
! GAGTCAGAAGACTGGTTAAT+CGG + chr1_3:3980559-3980578 None:intergenic 40.0%
! TTCACAAACAATGTAGCGGA+CGG + chr1_3:3980704-3980723 None:intergenic 40.0%
TGAATTCCAATTCCACCTAC+TGG + chr1_3:3980815-3980834 None:intergenic 40.0%
GTAGGTGGAATTGGAATTCA+AGG - chr1_3:3980815-3980834 Msa0098050:intron 40.0%
GACACATAGATAGTCCAGTT+GGG - chr1_3:3980837-3980856 Msa0098050:intron 40.0%
ACATTATCCCTTCAACAGCA+GGG + chr1_3:3981000-3981019 None:intergenic 40.0%
AACATTATCCCTTCAACAGC+AGG + chr1_3:3981001-3981020 None:intergenic 40.0%
CTGTTGAAGGGATAATGTTG+TGG - chr1_3:3981002-3981021 Msa0098050:intron 40.0%
GTTGAAGGGATAATGTTGTG+GGG - chr1_3:3981004-3981023 Msa0098050:intron 40.0%
GATAATGTTGTGGGGATTCT+GGG - chr1_3:3981012-3981031 Msa0098050:intron 40.0%
TCTGGGAGTTGTTTATGAGT+AGG - chr1_3:3981029-3981048 Msa0098050:intron 40.0%
CTGGGAGTTGTTTATGAGTA+GGG - chr1_3:3981030-3981049 Msa0098050:intron 40.0%
! CATGGTCATGTTGATGAACA+AGG - chr1_3:3981142-3981161 Msa0098050:five_prime_UTR 40.0%
CAAGGTCAATTCAACTTCAG+AGG - chr1_3:3981160-3981179 Msa0098050:five_prime_UTR 40.0%
ATCAATTGACACCTCCATTG+GGG + chr1_3:3981266-3981285 None:intergenic 40.0%
!! GGTCTCTGTGCTTTTTGCTT+TGG + chr1_3:3976135-3976154 None:intergenic 45.0%
GCGTTACTCGCAAATTTGAG+TGG - chr1_3:3976301-3976320 Msa0098050:CDS 45.0%
TACTCGCAAATTTGAGTGGG+GGG - chr1_3:3976305-3976324 Msa0098050:CDS 45.0%
GAAATCTCACTCTCACTCTC+AGG - chr1_3:3976402-3976421 Msa0098050:CDS 45.0%
CCGTCCTATCAAAGATTGGA+CGG + chr1_3:3976590-3976609 None:intergenic 45.0%
CCGTCCAATCTTTGATAGGA+CGG - chr1_3:3976587-3976606 Msa0098050:CDS 45.0%
GTGACCGTCCTATCAAAGAT+TGG + chr1_3:3976594-3976613 None:intergenic 45.0%
TTAGCAGCATTGCTCTCACT+TGG + chr1_3:3977044-3977063 None:intergenic 45.0%
TGGCATCTCAATTGCTGCAA+TGG - chr1_3:3977104-3977123 Msa0098050:CDS 45.0%
TACACCTTGATCACCTGCTT+TGG + chr1_3:3977144-3977163 None:intergenic 45.0%
AACCGTGTAAGCAGAACCAA+TGG + chr1_3:3977258-3977277 None:intergenic 45.0%
! TGGTTCTGCTTACACGGTTT+CGG - chr1_3:3977259-3977278 Msa0098050:CDS 45.0%
! TACACGGTTTCGGCTTTTGT+TGG - chr1_3:3977269-3977288 Msa0098050:CDS 45.0%
AGCAGATTCCTGAGAAAGGT+CGG + chr1_3:3977300-3977319 None:intergenic 45.0%
CATCAGCAGATTCCTGAGAA+AGG + chr1_3:3977304-3977323 None:intergenic 45.0%
CTTCTGTTATGAAGGGTAGC+TGG - chr1_3:3977475-3977494 Msa0098050:intron 45.0%
TCAGGCCATCCTCAAATTGT+GGG + chr1_3:3977887-3977906 None:intergenic 45.0%
TTCAGGCCATCCTCAAATTG+TGG + chr1_3:3977888-3977907 None:intergenic 45.0%
GATGGCCTGAATAATTGGTC+TGG - chr1_3:3977897-3977916 Msa0098050:CDS 45.0%
TTGCATGATTCCATGGCAGA+TGG - chr1_3:3977939-3977958 Msa0098050:CDS 45.0%
GGAATTCAGCAGGAGATAAC+TGG - chr1_3:3978026-3978045 Msa0098050:CDS 45.0%
CCACAAAGTAGCTCGTACAT+CGG + chr1_3:3978123-3978142 None:intergenic 45.0%
! CGATGTACGAGCTACTTTGT+GGG - chr1_3:3978121-3978140 Msa0098050:CDS 45.0%
ATATACTGCTCTCGGAGATC+TGG + chr1_3:3978155-3978174 None:intergenic 45.0%
GATCTCCGAGAGCAGTATAT+AGG - chr1_3:3978155-3978174 Msa0098050:CDS 45.0%
!! TGGTGTGTTCTAAAGTGTGC+AGG - chr1_3:3978450-3978469 Msa0098050:intron 45.0%
!! GGTGTGTTCTAAAGTGTGCA+GGG - chr1_3:3978451-3978470 Msa0098050:intron 45.0%
! TAAAGGACCGCTTTGGATGA+GGG + chr1_3:3978526-3978545 None:intergenic 45.0%
! ATAAAGGACCGCTTTGGATG+AGG + chr1_3:3978527-3978546 None:intergenic 45.0%
TATTTAGAGGGACCTCCTTC+TGG - chr1_3:3978544-3978563 Msa0098050:intron 45.0%
AAGAACTTAGCTGTTGCCCT+AGG - chr1_3:3978823-3978842 Msa0098050:intron 45.0%
! GCCATTGGTGGAAGTATATG+AGG + chr1_3:3979302-3979321 None:intergenic 45.0%
AGAGAATCTCTTGCCATTGG+TGG + chr1_3:3979314-3979333 None:intergenic 45.0%
CCAAGAGAATCTCTTGCCAT+TGG + chr1_3:3979317-3979336 None:intergenic 45.0%
CCAATGGCAAGAGATTCTCT+TGG - chr1_3:3979314-3979333 Msa0098050:CDS 45.0%
AGAGATTCTCTTGGACCTCA+CGG - chr1_3:3979323-3979342 Msa0098050:CDS 45.0%
ATCAAGTATCTGCTTGGGTC+CGG - chr1_3:3979444-3979463 Msa0098050:CDS 45.0%
!! CGGATTGGTTCTGGTTCAAA+TGG - chr1_3:3979464-3979483 Msa0098050:CDS 45.0%
GCTGACAATCAGTGGATCAA+TGG - chr1_3:3979515-3979534 Msa0098050:CDS 45.0%
GACAATCAGTGGATCAATGG+AGG - chr1_3:3979518-3979537 Msa0098050:CDS 45.0%
CCGAGGTTTCAGATGATAGA+TGG - chr1_3:3979546-3979565 Msa0098050:CDS 45.0%
GGTGTAGACTTAATGGTTGC+CGG - chr1_3:3979644-3979663 Msa0098050:intron 45.0%
GTTGCTTAACATGTGCCCTA+AGG + chr1_3:3979991-3980010 None:intergenic 45.0%
AGTCTAGTCCCGTGAATTTC+AGG + chr1_3:3980199-3980218 None:intergenic 45.0%
ACACAGAACGATTTCCCGAT+TGG - chr1_3:3980257-3980276 Msa0098050:CDS 45.0%
TGCTGATGCATGTTCCAATC+GGG + chr1_3:3980274-3980293 None:intergenic 45.0%
CTGCTGATGCATGTTCCAAT+CGG + chr1_3:3980275-3980294 None:intergenic 45.0%
! CCCAGTTGAAGTGTTTCACA+AGG + chr1_3:3980331-3980350 None:intergenic 45.0%
TATTGGACTGAGCCACAACA+AGG - chr1_3:3980377-3980396 Msa0098050:CDS 45.0%
ATTGGACTGAGCCACAACAA+GGG - chr1_3:3980378-3980397 Msa0098050:CDS 45.0%
TGGATGGAACTGTTCAGCAA+TGG - chr1_3:3980489-3980508 Msa0098050:intron 45.0%
! AGTCTTCTGACTCGCTACAA+GGG - chr1_3:3980566-3980585 Msa0098050:intron 45.0%
GGACACATAGATAGTCCAGT+TGG - chr1_3:3980836-3980855 Msa0098050:intron 45.0%
TCAAGCGAAGAACAAACGAC+AGG + chr1_3:3980863-3980882 None:intergenic 45.0%
AGTTATGCTTAGGGAAGCCA+TGG - chr1_3:3980970-3980989 Msa0098050:intron 45.0%
GGATAATGTTGTGGGGATTC+TGG - chr1_3:3981011-3981030 Msa0098050:intron 45.0%
GAGTAGGGATAATGCGCATT+TGG - chr1_3:3981045-3981064 Msa0098050:intron 45.0%
TGATAAAGGTGACTCCCCAA+TGG - chr1_3:3981249-3981268 Msa0098050:five_prime_UTR 45.0%
TACTTCTTGGCTATGAAGCC+CGG - chr1_3:3981424-3981443 Msa0098050:five_prime_UTR 45.0%
!!! AATATTTTTTGAATATTTTT+GGG + chr1_3:3976165-3976184 None:intergenic 5.0%
!!! TTTGTAATTTTAATTTTTAA+AGG - chr1_3:3976550-3976569 Msa0098050:CDS 5.0%
!!! TATATATAACATTTAATTTA+TGG - chr1_3:3979948-3979967 Msa0098050:CDS 5.0%
!!! ATATATAACATTTAATTTAT+GGG - chr1_3:3979949-3979968 Msa0098050:CDS 5.0%
!! AAAAACTTATATATAAATTA+AGG + chr1_3:3980145-3980164 None:intergenic 5.0%
CGTGACCCGTCTCATCAAAT+TGG - chr1_3:3976509-3976528 Msa0098050:CDS 50.0%
GGTCTGCAACGGCTACATTA+AGG + chr1_3:3976643-3976662 None:intergenic 50.0%
TCGTCCAAAGCAGGTGATCA+AGG - chr1_3:3977137-3977156 Msa0098050:CDS 50.0%
TTGCCAGCATTCGTTTCGGT+CGG + chr1_3:3977204-3977223 None:intergenic 50.0%
GACCTTGCCAGCATTCGTTT+CGG + chr1_3:3977208-3977227 None:intergenic 50.0%
! TGGAGTATCCGACCTTTCTC+AGG - chr1_3:3977289-3977308 Msa0098050:intron 50.0%
GAAGGGTAGCTGGGAAAAGT+TGG - chr1_3:3977485-3977504 Msa0098050:intron 50.0%
GGTAGCTGGGAAAAGTTGGA+AGG - chr1_3:3977489-3977508 Msa0098050:intron 50.0%
! CACTGTCGACTAAACCCGAT+CGG - chr1_3:3977520-3977539 Msa0098050:intron 50.0%
! ACTGTCGACTAAACCCGATC+GGG - chr1_3:3977521-3977540 Msa0098050:intron 50.0%
TATTTGGAAGGACCTGCTCC+TGG - chr1_3:3977552-3977571 Msa0098050:intron 50.0%
AGCAAGTCAATTCCAGGAGC+AGG + chr1_3:3977567-3977586 None:intergenic 50.0%
! CCGATGTACGAGCTACTTTG+TGG - chr1_3:3978120-3978139 Msa0098050:CDS 50.0%
TGCAGGGAACCGATACAGAT+TGG - chr1_3:3978467-3978486 Msa0098050:intron 50.0%
GCAGGGAACCGATACAGATT+GGG - chr1_3:3978468-3978487 Msa0098050:intron 50.0%
CAGCGTCACCCAATCTGTAT+CGG + chr1_3:3978479-3978498 None:intergenic 50.0%
TGGATGAGGGGCCATTTAGA+AGG + chr1_3:3978513-3978532 None:intergenic 50.0%
AAATGGCCCCTCATCCAAAG+CGG - chr1_3:3978516-3978535 Msa0098050:intron 50.0%
! AAAGGACCGCTTTGGATGAG+GGG + chr1_3:3978525-3978544 None:intergenic 50.0%
!! ACAAGAATGTCGGTGCCAGA+AGG + chr1_3:3978562-3978581 None:intergenic 50.0%
AAAAGTCCAACCTGTGCAGC+TGG + chr1_3:3978634-3978653 None:intergenic 50.0%
CAAGTATGTAGCGGCCACTT+AGG + chr1_3:3979352-3979371 None:intergenic 50.0%
GATCAATGGAGGACAAACCG+AGG - chr1_3:3979529-3979548 Msa0098050:CDS 50.0%
TAGCAGCTACCCTAACACCA+TGG - chr1_3:3980220-3980239 Msa0098050:CDS 50.0%
! ACACTGCATCTTCTGGGAAG+TGG - chr1_3:3980469-3980488 Msa0098050:intron 50.0%
! TGCATCTTCTGGGAAGTGGA+TGG - chr1_3:3980473-3980492 Msa0098050:intron 50.0%
CTTGTAGCGAGTCAGAAGAC+TGG + chr1_3:3980567-3980586 None:intergenic 50.0%
! CAGTCTTCTGACTCGCTACA+AGG - chr1_3:3980565-3980584 Msa0098050:intron 50.0%
!! ATGTAGCGGACGGATCTAGT+TGG + chr1_3:3980694-3980713 None:intergenic 50.0%
CAAGAACAAGGTGCACCAGT+AGG - chr1_3:3980797-3980816 Msa0098050:intron 50.0%
! GCGCATTTGGTGAATGCAGA+AGG - chr1_3:3981058-3981077 Msa0098050:CDS 50.0%
GAGTGGCTATCTCACAGTCA+TGG - chr1_3:3981124-3981143 Msa0098050:exon 50.0%
TAAAGGTGACTCCCCAATGG+AGG - chr1_3:3981252-3981271 Msa0098050:five_prime_UTR 50.0%
TCACCGACCGAAACGAATGC+TGG - chr1_3:3977198-3977217 Msa0098050:CDS 55.0%
GACCGAAACGAATGCTGGCA+AGG - chr1_3:3977203-3977222 Msa0098050:CDS 55.0%
TACAGATTGGGTGACGCTGC+AGG - chr1_3:3978480-3978499 Msa0098050:intron 55.0%
ACAGATTGGGTGACGCTGCA+GGG - chr1_3:3978481-3978500 Msa0098050:intron 55.0%
!! AGAATGTCGGTGCCAGAAGG+AGG + chr1_3:3978559-3978578 None:intergenic 55.0%
GTCTATCGAAACCGGGCCTA+GGG + chr1_3:3978842-3978861 None:intergenic 55.0%
TGTCTATCGAAACCGGGCCT+AGG + chr1_3:3978843-3978862 None:intergenic 55.0%
GGACCTCACGGAATCCTAAG+TGG - chr1_3:3979335-3979354 Msa0098050:CDS 55.0%
AACTTGGATGGGTCCTGCTC+AGG - chr1_3:3979388-3979407 Msa0098050:CDS 55.0%
TTCTCGGTGATCACCTGAGC+AGG + chr1_3:3979404-3979423 None:intergenic 55.0%
GTATCTGCTTGGGTCCGGAT+TGG - chr1_3:3979449-3979468 Msa0098050:CDS 55.0%
! CCACTGATTGTCAGCGCCAA+GGG + chr1_3:3979510-3979529 None:intergenic 55.0%
! TCCACTGATTGTCAGCGCCA+AGG + chr1_3:3979511-3979530 None:intergenic 55.0%
ACGCTTCCGAATCTGCAGTG+TGG + chr1_3:3980168-3980187 None:intergenic 55.0%
AGATGCAGTGTCCGCGAGTT+TGG + chr1_3:3980460-3980479 None:intergenic 55.0%
TCGCGGACACTGCATCTTCT+GGG - chr1_3:3980463-3980482 Msa0098050:intron 55.0%
GAACAAGGTGCACCAGTAGG+TGG - chr1_3:3980800-3980819 Msa0098050:intron 55.0%
GGTGCACCAGTAGGTGGAAT+TGG - chr1_3:3980806-3980825 Msa0098050:intron 55.0%
GAACAAACGACAGGCCCAAC+TGG + chr1_3:3980854-3980873 None:intergenic 55.0%
TTCAACAGCAGGGTGAGCCA+TGG + chr1_3:3980990-3981009 None:intergenic 55.0%
ATGGCTCACCCTGCTGTTGA+AGG - chr1_3:3980989-3981008 Msa0098050:intron 55.0%
TGGCTCACCCTGCTGTTGAA+GGG - chr1_3:3980990-3981009 Msa0098050:intron 55.0%
AGACTGGGCACGACTCACAC+CGG - chr1_3:3976829-3976848 Msa0098050:CDS 60.0%
! TGTGCAGCTGGTGGTGTCGA+AGG + chr1_3:3978622-3978641 None:intergenic 60.0%
TTCGACACCACCAGCTGCAC+AGG - chr1_3:3978621-3978640 Msa0098050:intron 60.0%
ACACCACCAGCTGCACAGGT+TGG - chr1_3:3978625-3978644 Msa0098050:intron 60.0%
AGTCCAACCTGTGCAGCTGG+TGG + chr1_3:3978631-3978650 None:intergenic 60.0%
CTTAGCTGTTGCCCTAGGCC+CGG - chr1_3:3978828-3978847 Msa0098050:intron 60.0%
CGGCCACTTAGGATTCCGTG+AGG + chr1_3:3979341-3979360 None:intergenic 60.0%
!! GCTTGGGTCCGGATTGGTTC+TGG - chr1_3:3979455-3979474 Msa0098050:CDS 60.0%
!! CCCTTGGCGCTGACAATCAG+TGG - chr1_3:3979507-3979526 Msa0098050:CDS 60.0%
CTCGCGGACACTGCATCTTC+TGG - chr1_3:3980462-3980481 Msa0098050:intron 60.0%
TGGACGTGTGCAGCGCAAGC+TGG - chr1_3:3978046-3978065 Msa0098050:CDS 65.0%
! GCAGCTGGTGGTGTCGAAGG+AGG + chr1_3:3978619-3978638 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3976019 3981457 3976019 ID=Msa0098050;Name=Msa0098050
chr1_3 mRNA 3976019 3981457 3976019 ID=Msa0098050-mRNA-1;Parent=Msa0098050;Name=Msa0098050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=307|1|1|1|0.71|0.62|8|166|930
chr1_3 exon 3976019 3977300 3976019 ID=Msa0098050-mRNA-1:exon:1277;Parent=Msa0098050-mRNA-1
chr1_3 exon 3977746 3978282 3977746 ID=Msa0098050-mRNA-1:exon:1276;Parent=Msa0098050-mRNA-1
chr1_3 exon 3978834 3979011 3978834 ID=Msa0098050-mRNA-1:exon:1275;Parent=Msa0098050-mRNA-1
chr1_3 exon 3979290 3979648 3979290 ID=Msa0098050-mRNA-1:exon:1274;Parent=Msa0098050-mRNA-1
chr1_3 exon 3979847 3980003 3979847 ID=Msa0098050-mRNA-1:exon:1273;Parent=Msa0098050-mRNA-1
chr1_3 exon 3980092 3980459 3980092 ID=Msa0098050-mRNA-1:exon:1272;Parent=Msa0098050-mRNA-1
chr1_3 exon 3981053 3981210 3981053 ID=Msa0098050-mRNA-1:exon:1271;Parent=Msa0098050-mRNA-1
chr1_3 exon 3981231 3981457 3981231 ID=Msa0098050-mRNA-1:exon:1270;Parent=Msa0098050-mRNA-1
chr1_3 five_prime_UTR 3981231 3981457 3981231 ID=Msa0098050-mRNA-1:five_prime_utr;Parent=Msa0098050-mRNA-1
chr1_3 five_prime_UTR 3981131 3981210 3981131 ID=Msa0098050-mRNA-1:five_prime_utr;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3981053 3981130 3981053 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3980092 3980459 3980092 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3979847 3980003 3979847 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3979290 3979648 3979290 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3978834 3979011 3978834 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3977746 3978282 3977746 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 CDS 3976185 3977300 3976185 ID=Msa0098050-mRNA-1:cds;Parent=Msa0098050-mRNA-1
chr1_3 three_prime_UTR 3976019 3976184 3976019 ID=Msa0098050-mRNA-1:three_prime_utr;Parent=Msa0098050-mRNA-1
Gene Sequence

>Msa0098050

ATGAAGAGGTTCTTCACAAGCTGTGTCTCAAAGTTTCACTCCCACTCGAAACATAAGAAATCTCACTCTCACTCTCAGATAATGGCAGGAAACATCTCTGGTCCAAGTGAGAGCAATGCTGCTAATATTTTGCTGAATCATGACTTCTCAAATGACCTGAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCGTCCAAAGCAGGTGATCAAGGTGTAAATTTGATGTATTCGGATTGTAATTATGCTGTTATCACCGACCGAAACGAATGCTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATTTCCATTGGTTCTGCTTACACGGTTTCGGCTTTTGTTGGAGTATCCGACCTTTCTCAGGAATCTGCTGATGTGAAAGCTACACTGAAACTAGAATATCATGATTCAGCTACAAATTATTTGTTCATTGGAGGAACTTCTGTTATGAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCACTGTCGACTAAACCCGATCGGGTTGTATTTTATTTGGAAGGACCTGCTCCTGGAATTGACTTGCTTATAAGATCAGTAGAGATCAACTGTTCCATTCCAAATGACAACAAGTTCACAAGTACAGAAACATGTGTTTCTACTGGAGATGAAAGCATCATAATAAACCCACAATTTGAGGATGGCCTGAATAATTGGTCTGGAAGAAGCTGCAAGATTGTGTTGCATGATTCCATGGCAGATGGTAAAATTGTTCCAAAGTCTGGGAAATATTTTGCATGCGCAACAGAACGAACACAATTCTGGAATGGAATTCAGCAGGAGATAACTGGACGTGTGCAGCGCAAGCTGGCCTATGAGATCACTGCTTTAGTTCGAATATATGGCAACAATGTCACTAATGCCGATGTACGAGCTACTTTGTGGGTTCAAACACCAGATCTCCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGGAACCGATACAGATTGGGTGACGCTGCAGGGAAAATTCCTTCTAAATGGCCCCTCATCCAAAGCGGTCCTTTATTTAGAGGGACCTCCTTCTGGCACCGACATTCTTGTTAATACTTTGGTTGTAAAGCATGCTGCTAAAACACCTCCTTCGACACCACCAGCTGCACAGAATGTTGCTTTTGGAATTAATATAATTGAGAACAGCAATCTTTCTGATGATACAAAAGGATGGTTTCCACTTGGTAATTGCACTTTAACTCTTAAATCCGGTTCTCCTCATATACTTCCACCAATGGCAAGAGATTCTCTTGGACCTCACGGAATCCTAAGTGGCCGCTACATACTTGTAACTAATAGAACACAAACTTGGATGGGTCCTGCTCAGGTGATCACCGAGAAATTAAAGCTATTTTTGACTTATCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGTTCAAATGGACCACAAAATGTGAATGTTGCCCTTGGCGCTGACAATCAGTGGATCAATGGAGGACAAACCGAGGTTTCAGATGATAGATGGCATGAAATTGGTGGATCCTTTAGAATTGAAAAGCAGCCAACAAAGATTATGGTTTATATTCAAGGTCCAGCTTCTGGTGTAGACTTAATGGTTGCCGGACTTCAAATTTTCCCTGTTGATAGACATGCAAGATTTAGATATTTAAAGATGCAGACAGACAAGATTCGGAAGCGTGATGTTGTCCTGAAATTCACGGGACTAGACTCTAGCAGCTACCCTAACACCATGGTGCAAGTTAAACAAACACAGAACGATTTCCCGATTGGAACATGCATCAGCAGATCAAACATTGACAATGAAGATTTTGTCAACTTCCTTGTGAAACACTTCAACTGGGCTGTGTTTGCAAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTGAATTACAAAGACGCCGATGATCTTTTAACCTTGTGTCAAAAGTACAAGATCCAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACTGTTCAGCAATGGATTAAGTCACTGAATAAAAATGATTTGATGACGGCTGTTCAAAACCGATTAACCAGTCTTCTGACTCGCTACAAGGGTAAGTTTAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGATTAGGCAAAGATATAAGGGCAAACATGTTCAAGACTGCAAACCAACTAGATCCGTCCGCTACATTGTTTGTGAATGATTATCATATTGAAGATGGATGTGACACAAGATCGTGTCCAAATAAATACATTGAACACATTCTTGATTTGCAAGAACAAGGTGCACCAGTAGGTGGAATTGGAATTCAAGGACACATAGATAGTCCAGTTGGGCCTGTCGTTTGTTCTTCGCTTGATAAATTAGGTATTCTTGGTTTACCGATATGGTTTACAGAACTTGATGTGTCTTCTATGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTTAGGGAAGCCATGGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTCTGGGAGTTGTTTATGAGTAGGGATAATGCGCATTTGGTGAATGCAGAAGGTGATATTAATGAAGCTGGAAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCACAGTCATGGTCATGTTGATGAACAAGGTCAATTCAACTTCAGAGGATTTTATGGAACATATAATGTGGAAATTGTGACACCATCAAAGAAAATTTCGAAGACATTCGTGCTTGATAAAGGTGACTCCCCAATGGAGGTGTCAATTGATTTATAA
Protein sequence

>Msa0098050

MKRFFTSCVSKFHSHSKHKKSHSHSQIMAGNISGPSESNAANILLNHDFSNDLNSWHLNCCNGYVISSKAGDQGVNLMYSDCNYAVITDRNECWQGLEQDITDRISIGSAYTVSAFVGVSDLSQESADVKATLKLEYHDSATNYLFIGGTSVMKGSWEKLEGTFSLSTKPDRVVFYLEGPAPGIDLLIRSVEINCSIPNDNKFTSTETCVSTGDESIIINPQFEDGLNNWSGRSCKIVLHDSMADGKIVPKSGKYFACATERTQFWNGIQQEITGRVQRKLAYEITALVRIYGNNVTNADVRATLWVQTPDLREQYIGIANVQGTDTDWVTLQGKFLLNGPSSKAVLYLEGPPSGTDILVNTLVVKHAAKTPPSTPPAAQNVAFGINIIENSNLSDDTKGWFPLGNCTLTLKSGSPHILPPMARDSLGPHGILSGRYILVTNRTQTWMGPAQVITEKLKLFLTYQVSAWVRIGSGSNGPQNVNVALGADNQWINGGQTEVSDDRWHEIGGSFRIEKQPTKIMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLKMQTDKIRKRDVVLKFTGLDSSSYPNTMVQVKQTQNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFANELKWYWTEPQQGNLNYKDADDLLTLCQKYKIQTRGHCIFWEVDGTVQQWIKSLNKNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHIEDGCDTRSCPNKYIEHILDLQEQGAPVGGIGIQGHIDSPVGPVVCSSLDKLGILGLPIWFTELDVSSMNEYVRGDDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDEQGQFNFRGFYGTYNVEIVTPSKKISKTFVLDKGDSPMEVSIDL*