Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017960 | sp|Q7XII4|REM41_ORYSJ | 37.097 | 124 | 77 | 1 | 283 | 405 | 193 | 316 | 1.86e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017960 | Msa0051920 | 0.953583 | 1.992798e-111 | -8.615850e-47 |
| Msa0017960 | Msa0078500 | 0.808330 | 3.265907e-50 | -8.615850e-47 |
| Msa0017960 | Msa0125870 | 0.937109 | 5.904676e-98 | -8.615850e-47 |
| Msa0017960 | Msa0126210 | 0.803487 | 3.405266e-49 | -8.615850e-47 |
| Msa0017960 | Msa0307280 | 0.826366 | 2.821707e-54 | -8.615850e-47 |
| Msa0017960 | Msa0465610 | 0.820160 | 7.944655e-53 | -8.615850e-47 |
| Msa0017960 | Msa0620500 | 0.805714 | 1.168090e-49 | -8.615850e-47 |
| Msa0017960 | Msa1072960 | 0.821365 | 4.197436e-53 | -8.615850e-47 |
| Msa0017960 | Msa1104110 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa0017960 | Msa1147700 | 0.809624 | 1.725679e-50 | -8.615850e-47 |
| Msa0017960 | Msa1160910 | 0.811191 | 7.920534e-51 | -8.615850e-47 |
| Msa0017960 | Msa1215980 | 0.803736 | 3.022818e-49 | -8.615850e-47 |
| Msa0017960 | Msa1242020 | 0.800227 | 1.590891e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017960 | MtrunA17_Chr1g0153281 | 98.293 | 410 | 7 | 0 | 1 | 410 | 211 | 620 | 0.0 | 833 |
| Msa0017960 | MtrunA17_Chr8g0375091 | 40.995 | 422 | 203 | 13 | 20 | 409 | 30 | 437 | 4.00e-75 | 240 |
| Msa0017960 | MtrunA17_Chr5g0402201 | 39.540 | 435 | 195 | 17 | 10 | 409 | 2 | 403 | 2.29e-60 | 201 |
| Msa0017960 | MtrunA17_Chr8g0375241 | 28.000 | 375 | 210 | 9 | 72 | 407 | 148 | 501 | 3.52e-21 | 95.5 |
| Msa0017960 | MtrunA17_Chr8g0345191 | 29.046 | 241 | 142 | 6 | 193 | 407 | 222 | 459 | 5.56e-19 | 88.6 |
| Msa0017960 | MtrunA17_Chr8g0376741 | 24.874 | 398 | 241 | 14 | 52 | 407 | 144 | 525 | 2.95e-15 | 77.4 |
| Msa0017960 | MtrunA17_Chr8g0377061 | 38.235 | 102 | 63 | 0 | 299 | 400 | 247 | 348 | 7.25e-15 | 75.5 |
| Msa0017960 | MtrunA17_Chr8g0349271 | 35.577 | 104 | 66 | 1 | 303 | 405 | 97 | 200 | 3.51e-12 | 65.1 |
| Msa0017960 | MtrunA17_Chr7g0257771 | 37.113 | 97 | 61 | 0 | 289 | 385 | 163 | 259 | 1.29e-11 | 64.7 |
| Msa0017960 | MtrunA17_Chr1g0173571 | 36.082 | 97 | 62 | 0 | 289 | 385 | 157 | 253 | 2.13e-11 | 64.3 |
| Msa0017960 | MtrunA17_Chr1g0203401 | 35.577 | 104 | 66 | 1 | 303 | 405 | 106 | 209 | 3.86e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017960 | AT1G45207.3 | 51.313 | 419 | 156 | 15 | 1 | 410 | 170 | 549 | 7.62e-111 | 336 |
| Msa0017960 | AT1G45207.2 | 50.708 | 424 | 156 | 16 | 1 | 410 | 171 | 555 | 2.75e-108 | 330 |
| Msa0017960 | AT4G36970.1 | 40.515 | 427 | 189 | 16 | 20 | 405 | 12 | 414 | 7.35e-46 | 164 |
| Msa0017960 | AT2G02170.3 | 28.302 | 371 | 212 | 11 | 72 | 410 | 11 | 359 | 3.24e-20 | 91.7 |
| Msa0017960 | AT2G02170.6 | 28.302 | 371 | 212 | 11 | 72 | 410 | 11 | 359 | 3.24e-20 | 91.7 |
| Msa0017960 | AT2G02170.1 | 32.018 | 228 | 123 | 5 | 210 | 410 | 262 | 484 | 1.78e-17 | 84.7 |
| Msa0017960 | AT2G02170.2 | 32.018 | 228 | 123 | 5 | 210 | 410 | 262 | 484 | 1.78e-17 | 84.7 |
| Msa0017960 | AT2G02170.5 | 32.018 | 228 | 123 | 5 | 210 | 410 | 262 | 484 | 1.78e-17 | 84.7 |
| Msa0017960 | AT2G02170.4 | 32.018 | 228 | 123 | 5 | 210 | 410 | 262 | 484 | 1.78e-17 | 84.7 |
| Msa0017960 | AT1G30320.1 | 26.064 | 376 | 202 | 14 | 69 | 410 | 175 | 508 | 1.82e-17 | 84.7 |
| Msa0017960 | AT1G67590.1 | 33.168 | 202 | 119 | 5 | 205 | 400 | 141 | 332 | 1.56e-15 | 77.8 |
| Msa0017960 | AT1G53860.1 | 23.733 | 375 | 196 | 17 | 69 | 408 | 119 | 438 | 1.80e-13 | 72.0 |
| Msa0017960 | AT1G53860.2 | 23.733 | 375 | 196 | 17 | 69 | 408 | 51 | 370 | 1.88e-13 | 71.6 |
| Msa0017960 | AT3G61260.1 | 34.615 | 104 | 67 | 1 | 303 | 405 | 109 | 212 | 7.76e-12 | 64.7 |
| Msa0017960 | AT3G57540.1 | 32.381 | 105 | 71 | 0 | 293 | 397 | 181 | 285 | 2.68e-11 | 64.7 |
| Msa0017960 | AT2G41870.1 | 33.333 | 96 | 64 | 0 | 289 | 384 | 155 | 250 | 9.20e-11 | 62.8 |
Find 158 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAACGTTGCCGTCTAAA+TGG | 0.214560 | 1_1:+29998190 | Msa0017960:CDS |
| GAGTATCTCTTTCTCTAAAA+TGG | 0.225892 | 1_1:+29999231 | Msa0017960:CDS |
| TTACTATGTTGACACTAAAT+TGG | 0.250137 | 1_1:+30001228 | Msa0017960:three_prime_UTR |
| TTGTTTGTCCCAGGGCTAAA+AGG | 0.256081 | 1_1:+29999905 | Msa0017960:intron |
| AGAGGCTTATTTCTAAAGTT+TGG | 0.258948 | 1_1:-30001372 | Msa0017950:intron |
| CTTTCTCTAAAATGGATATC+AGG | 0.259197 | 1_1:+29999239 | Msa0017960:CDS |
| AGCTACCCTCTGGGCTCATC+TGG | 0.267123 | 1_1:-29999135 | Msa0017950:intron |
| ACTGAAATTCGCTCAGAAAA+AGG | 0.296875 | 1_1:+30000560 | Msa0017960:CDS |
| GAATAGGGCCTTGTGTTTCT+TGG | 0.297375 | 1_1:-29999302 | Msa0017950:intron |
| CTCACAAGGTTATGTCATTT+CGG | 0.298149 | 1_1:+30000640 | Msa0017960:CDS |
| GAATGCTGTAGAAGCTTAAA+AGG | 0.304020 | 1_1:-30000709 | Msa0017950:intron |
| AATGCTAATGCAACTGGAAT+TGG | 0.310682 | 1_1:+29997934 | Msa0017960:five_prime_UTR |
| CATAACCTTGTGAGAAGTTC+TGG | 0.325768 | 1_1:-30000631 | Msa0017950:intron |
| CTGAACCTCTACCAGTGAAT+AGG | 0.332401 | 1_1:-29999318 | Msa0017950:intron |
| GCATTAACAGCAGCAGAAAA+AGG | 0.359752 | 1_1:-29998405 | Msa0017950:intron |
| CACCATTACCAACTTGCTTC+CGG | 0.360198 | 1_1:-29998143 | Msa0017950:intron |
| TGACGATAATTCGGAGTTCC+AGG | 0.366291 | 1_1:-29998060 | Msa0017950:intron |
| AGAGAAAGAAGTCCTCATAT+TGG | 0.380866 | 1_1:-29999170 | Msa0017950:intron |
| GATGGGTTTACAAATAGTTC+TGG | 0.388906 | 1_1:+29998435 | Msa0017960:CDS |
| GGAGAAGTTTGATGCTTTCA+AGG | 0.390085 | 1_1:+29999063 | Msa0017960:CDS |
| TCTGGTGGCAATGGTGGTGG+AGG | 0.393951 | 1_1:+29998453 | Msa0017960:CDS |
| TATGGTTCAGACTAGGAAAT+CGG | 0.396156 | 1_1:+29997999 | Msa0017960:CDS |
| CTGAACAATGCTAATGCAAC+TGG | 0.402251 | 1_1:+29997928 | Msa0017960:five_prime_UTR |
| TCGGGAACGGGTACAGTGAC+GGG | 0.403774 | 1_1:+29998018 | Msa0017960:CDS |
| CTGCGTTGTGTTTAAGTAAT+GGG | 0.406242 | 1_1:+29998169 | Msa0017960:CDS |
| GAGAAAGAAGTCCTCATATT+GGG | 0.411403 | 1_1:-29999169 | Msa0017950:intron |
| TGAATATCATCTATAGTAGA+AGG | 0.414369 | 1_1:+30001449 | Msa0017960:three_prime_UTR |
| TGCCTTGTAGCCTCATCCTT+GGG | 0.421633 | 1_1:+30001308 | Msa0017960:three_prime_UTR |
| CCAGCACTCGATCTTCATCT+TGG | 0.432083 | 1_1:+29999371 | Msa0017960:CDS |
| GCTGTTAATGCCTCAGCTGA+TGG | 0.434402 | 1_1:+29998417 | Msa0017960:CDS |
| CCTTGACAATGACGATAATT+CGG | 0.435234 | 1_1:-29998069 | Msa0017950:intron |
| TTTGCTATTTCAGATGAAGT+TGG | 0.436926 | 1_1:+30000497 | Msa0017960:intron |
| GGTTCTTCCCCTCGATTAGT+TGG | 0.437388 | 1_1:+29997961 | Msa0017960:five_prime_UTR |
| TGGAGCTATGAAGAAGAGTA+TGG | 0.441511 | 1_1:+29997981 | Msa0017960:exon |
| GGTGGTGTTGCAATGCAAAA+AGG | 0.444448 | 1_1:+29998090 | Msa0017960:CDS |
| GTGCCTTGTAGCCTCATCCT+TGG | 0.445358 | 1_1:+30001307 | Msa0017960:three_prime_UTR |
| TGAACCTCTACCAGTGAATA+GGG | 0.445517 | 1_1:-29999317 | Msa0017950:intron |
| TGTTTGTCCCAGGGCTAAAA+GGG | 0.458702 | 1_1:+29999906 | Msa0017960:intron |
| TATTCGTTGTATTCGCCTGC+AGG | 0.459546 | 1_1:+29998342 | Msa0017960:CDS |
| CTGTTAATGCCTCAGCTGAT+GGG | 0.464443 | 1_1:+29998418 | Msa0017960:CDS |
| TCTGCAAATCTGTGACGGGC+AGG | 0.464852 | 1_1:-29999210 | Msa0017950:intron |
| CAGCACTCGATCTTCATCTT+GGG | 0.467973 | 1_1:+29999372 | Msa0017960:CDS |
| AAACACAAGGCCCTATTCAC+TGG | 0.468324 | 1_1:+29999307 | Msa0017960:CDS |
| ACATGGATGCTCTCAGATGC+AGG | 0.472253 | 1_1:+29998521 | Msa0017960:CDS |
| ACGGGTACAGTGACGGGGAC+TGG | 0.473096 | 1_1:+29998024 | Msa0017960:CDS |
| TTTCGGAGAGCCGGCCAGAT+GGG | 0.473847 | 1_1:+30000657 | Msa0017960:CDS |
| CTTTCTGTTCAAGTGAAGCT+AGG | 0.476381 | 1_1:+30000732 | Msa0017960:three_prime_UTR |
| GAGGAGCATGAGCTACCCTC+TGG | 0.483081 | 1_1:-29999145 | Msa0017950:intron |
| CCAAGATGAAGATCGAGTGC+TGG | 0.484979 | 1_1:-29999371 | Msa0017950:intron |
| AATGCAACTGGAATTGGAAC+TGG | 0.488888 | 1_1:+29997940 | Msa0017960:five_prime_UTR |
| GAGAACGTTGCCGTCTAAAT+GGG | 0.489634 | 1_1:+29998191 | Msa0017960:CDS |
| AGCGGACCACTCTTCGACTT+AGG | 0.491435 | 1_1:-29998297 | Msa0017950:intron |
| ATTTCGGAGAGCCGGCCAGA+TGG | 0.493284 | 1_1:+30000656 | Msa0017960:CDS |
| TTAGGTCTCCTCAGTGGCTG+TGG | 0.494524 | 1_1:-29998279 | Msa0017950:intron |
| GGCCAGATGGGTTCTTTGAG+TGG | 0.494804 | 1_1:+30000669 | Msa0017960:CDS |
| GTTTGATGCTTTCAAGGATG+CGG | 0.497959 | 1_1:+29999069 | Msa0017960:CDS |
| ACTGGTACATTTCCGAGTCC+TGG | 0.500376 | 1_1:+29998042 | Msa0017960:CDS |
| AGTGGTCCGCTTGGTCCACC+TGG | 0.500934 | 1_1:+29998309 | Msa0017960:CDS |
| TTTGTTCATAATCTTATCCA+TGG | 0.503384 | 1_1:-30000538 | Msa0017950:intron |
| CGCATGGGAAAATTTGCAAA+AGG | 0.505130 | 1_1:+29999945 | Msa0017960:CDS |
| CTGGTGGCAATGGTGGTGGA+GGG | 0.506953 | 1_1:+29998454 | Msa0017960:CDS |
| AGTTCTGGTGGCAATGGTGG+TGG | 0.506963 | 1_1:+29998450 | Msa0017960:CDS |
| GGCCGGAAGCAAGTTGGTAA+TGG | 0.508505 | 1_1:+29998141 | Msa0017960:CDS |
| TTCTGGCAACTTGATGAGCC+TGG | 0.509969 | 1_1:-30000614 | Msa0017950:intron |
| ATGTCCCTTCTTGAAACAGC+AGG | 0.510044 | 1_1:-29999106 | Msa0017950:intron |
| AATGGATATCAGGGATGTGC+AGG | 0.513273 | 1_1:+29999249 | Msa0017960:CDS |
| GTTCAGAAAATGTTGACAGC+TGG | 0.516670 | 1_1:+29999335 | Msa0017960:CDS |
| ACAAATAGTTCTGGTGGCAA+TGG | 0.516869 | 1_1:+29998444 | Msa0017960:CDS |
| AACCACTCAAAGAACCCATC+TGG | 0.516973 | 1_1:-30000671 | Msa0017950:intron |
| GTTATGTCATTTCGGAGAGC+CGG | 0.517925 | 1_1:+30000648 | Msa0017960:CDS |
| TTTCTCTAAAATGGATATCA+GGG | 0.518025 | 1_1:+29999240 | Msa0017960:CDS |
| GCTCGCTCAGTTAGTGTACA+TGG | 0.518862 | 1_1:+29998504 | Msa0017960:CDS |
| CTTTATTTAATAAGCAAGAT+CGG | 0.519759 | 1_1:+29997884 | Msa0017960:five_prime_UTR |
| CTCCCAAGGATGAGGCTACA+AGG | 0.522426 | 1_1:-30001310 | Msa0017950:intron |
| AGTTCTGAGCGAGTTGTAAG+TGG | 0.522590 | 1_1:+29998117 | Msa0017960:CDS |
| CAGACTAGGAAATCGGGAAC+GGG | 0.526664 | 1_1:+29998006 | Msa0017960:CDS |
| CATGCTCCTCTCCCAATATG+AGG | 0.528342 | 1_1:+29999158 | Msa0017960:CDS |
| ACCAGGTTTCAGAAATCAGA+AGG | 0.529199 | 1_1:+30001157 | Msa0017960:intron |
| AATAATATATGTATGTACTT+AGG | 0.529868 | 1_1:+30001349 | Msa0017960:three_prime_UTR |
| ATGGTTCAGACTAGGAAATC+GGG | 0.530303 | 1_1:+29998000 | Msa0017960:CDS |
| TTTGATGCTTTCAAGGATGC+GGG | 0.530327 | 1_1:+29999070 | Msa0017960:CDS |
| GCTACCCTCTGGGCTCATCT+GGG | 0.532927 | 1_1:-29999134 | Msa0017950:intron |
| ATCGGGAACGGGTACAGTGA+CGG | 0.542516 | 1_1:+29998017 | Msa0017960:CDS |
| GTTCTGAGCGAGTTGTAAGT+GGG | 0.543456 | 1_1:+29998118 | Msa0017960:CDS |
| TTGTTCAGATCTAACGAAGC+AGG | 0.544462 | 1_1:-29997913 | Msa0017950:intron |
| CTAGCTTCACTTGAACAGAA+AGG | 0.549094 | 1_1:-30000731 | Msa0017950:intron |
| TTTCTTGGACCACCTTGTCA+TGG | 0.550513 | 1_1:-29999287 | Msa0017950:intron |
| TCTGTGACGGGCAGGGAAGG+TGG | 0.550611 | 1_1:-29999202 | Msa0017950:intron |
| TATCCCCTGCTGTTTCAAGA+AGG | 0.551655 | 1_1:+29999101 | Msa0017960:CDS |
| GACGGGCAGGGAAGGTGGAG+TGG | 0.556016 | 1_1:-29999197 | Msa0017950:intron |
| AGAAGCTTAAAAGGCATGAC+AGG | 0.558480 | 1_1:-30000700 | Msa0017950:intron |
| TGAAACAGCAGGGGATACAT+TGG | 0.561049 | 1_1:-29999095 | Msa0017950:intron |
| TCCGCATCTTCCCATTTAGA+CGG | 0.561076 | 1_1:-29998201 | Msa0017950:intron |
| CTGCAAATCTGTGACGGGCA+GGG | 0.561186 | 1_1:-29999209 | Msa0017950:intron |
| AATACGAACTCCCAAGGATG+AGG | 0.562722 | 1_1:-30001318 | Msa0017950:intron |
| ATACTCTGCAAATCTGTGAC+GGG | 0.564896 | 1_1:-29999214 | Msa0017950:intron |
| AAATCTGTGACGGGCAGGGA+AGG | 0.566048 | 1_1:-29999205 | Msa0017950:intron |
| ACTGCGTTGTGTTTAAGTAA+TGG | 0.567379 | 1_1:+29998168 | Msa0017960:CDS |
| CACACGAACGGATCCTTGCA+TGG | 0.568343 | 1_1:+29998482 | Msa0017960:CDS |
| GAGTTCAGTTTCAGTCGACC+AGG | 0.570124 | 1_1:+30000596 | Msa0017960:CDS |
| TGCGTAACTTTGAGATGGAA+AGG | 0.570907 | 1_1:-30001501 | Msa0017950:intron |
| TTGAACAGAAACTATCAAGT+AGG | 0.570919 | 1_1:-30001410 | Msa0017950:intron |
| AGAAGTCCTCATATTGGGAG+AGG | 0.571056 | 1_1:-29999164 | Msa0017950:intron |
| AAAGAAGCGAGCATCTTCCA+TGG | 0.572035 | 1_1:+30000521 | Msa0017960:CDS |
| TCAGACTAGGAAATCGGGAA+CGG | 0.573486 | 1_1:+29998005 | Msa0017960:CDS |
| TGCTGTTTCAAGAAGGGACA+TGG | 0.573943 | 1_1:+29999108 | Msa0017960:CDS |
| TTCATAGCTCCAACTAATCG+AGG | 0.574579 | 1_1:-29997970 | Msa0017950:intron |
| ACAAGGCACTTAGATTCTAC+CGG | 0.575457 | 1_1:-30001293 | Msa0017950:intron |
| TAATTCGGAGTTCCAGGACT+CGG | 0.576781 | 1_1:-29998054 | Msa0017950:intron |
| TGGATTAAGAATGTCAAGAT+CGG | 0.577560 | 1_1:+29997845 | None:intergenic |
| TCTTTGAATACGAACTCCCA+AGG | 0.579359 | 1_1:-30001324 | Msa0017950:intron |
| CATGCAAGGATCCGTTCGTG+TGG | 0.580587 | 1_1:-29998481 | Msa0017950:intron |
| TGAAGTACAAGCACTTTAGC+CGG | 0.588600 | 1_1:+30001274 | Msa0017960:three_prime_UTR |
| AATGGGAAGATGCGGAGAGG+TGG | 0.589464 | 1_1:+29998208 | Msa0017960:CDS |
| CCGAATTATCGTCATTGTCA+AGG | 0.589710 | 1_1:+29998069 | Msa0017960:CDS |
| TCATAGCTCCAACTAATCGA+GGG | 0.590491 | 1_1:-29997969 | Msa0017950:intron |
| GATACTCTGCAAATCTGTGA+CGG | 0.592988 | 1_1:-29999215 | Msa0017950:intron |
| AGGAGCATGAGCTACCCTCT+GGG | 0.594386 | 1_1:-29999144 | Msa0017950:intron |
| AGGAAGCCAAAATCACCGCA+TGG | 0.595215 | 1_1:+29999929 | Msa0017960:CDS |
| ATCCCCTGCTGTTTCAAGAA+GGG | 0.596120 | 1_1:+29999102 | Msa0017960:CDS |
| AAGGCCCTATTCACTGGTAG+AGG | 0.600698 | 1_1:+29999313 | Msa0017960:CDS |
| GGGTTTACAAATAGTTCTGG+TGG | 0.601682 | 1_1:+29998438 | Msa0017960:CDS |
| GGAAGCCAAAATCACCGCAT+GGG | 0.605836 | 1_1:+29999930 | Msa0017960:CDS |
| AAGTCGAAGAGTGGTCCGCT+TGG | 0.609344 | 1_1:+29998300 | Msa0017960:CDS |
| GCAACCCAGATGAGCCCAGA+GGG | 0.612368 | 1_1:+29999130 | Msa0017960:CDS |
| TGGAGGGCTTCCCACACGAA+CGG | 0.615766 | 1_1:+29998470 | Msa0017960:CDS |
| AACGAATAATACGCAACACC+AGG | 0.618153 | 1_1:-29998327 | Msa0017950:intron |
| CTAACTGAGCGAGCCATGCA+AGG | 0.618650 | 1_1:-29998495 | Msa0017950:intron |
| AGAAGAGTATGGTTCAGACT+AGG | 0.619003 | 1_1:+29997992 | Msa0017960:CDS |
| TGTCCCTTCTTGAAACAGCA+GGG | 0.622908 | 1_1:-29999105 | Msa0017950:intron |
| CGGGAACGGGTACAGTGACG+GGG | 0.623331 | 1_1:+29998019 | Msa0017960:CDS |
| AATAGTTCTGGTGGCAATGG+TGG | 0.623434 | 1_1:+29998447 | Msa0017960:CDS |
| TTCTGAGCGAGTTGTAAGTG+GGG | 0.623568 | 1_1:+29998119 | Msa0017960:CDS |
| GCCGTCTAAATGGGAAGATG+CGG | 0.624201 | 1_1:+29998200 | Msa0017960:CDS |
| GAATAATACGCAACACCAGG+TGG | 0.633920 | 1_1:-29998324 | Msa0017950:intron |
| CAATCGTCGATTCCTTCCCG+AGG | 0.641783 | 1_1:+29998546 | Msa0017960:CDS |
| CATGGATGCTCTCAGATGCA+GGG | 0.641801 | 1_1:+29998522 | Msa0017960:CDS |
| TTGTCCCAGGGCTAAAAGGG+AGG | 0.643693 | 1_1:+29999909 | Msa0017960:intron |
| TTAGCATAACAACCTCGGGA+AGG | 0.645636 | 1_1:-29998558 | Msa0017950:intron |
| GGATATCAGGGATGTGCAGG+TGG | 0.646158 | 1_1:+29999252 | Msa0017960:CDS |
| ATGCAAGGATCCGTTCGTGT+GGG | 0.646814 | 1_1:-29998480 | Msa0017950:intron |
| ATTTGTAAACCCATCAGCTG+AGG | 0.649726 | 1_1:-29998427 | Msa0017950:intron |
| GCAACACCAGGTGGACCAAG+CGG | 0.656850 | 1_1:-29998315 | Msa0017950:intron |
| ACTCAAAGAACCCATCTGGC+CGG | 0.658538 | 1_1:-30000667 | Msa0017950:intron |
| TCTGAGCGAGTTGTAAGTGG+GGG | 0.659759 | 1_1:+29998120 | Msa0017960:CDS |
| AGGAGACCTAAGTCGAAGAG+TGG | 0.659853 | 1_1:+29998291 | Msa0017960:CDS |
| GTCCCTTCTTGAAACAGCAG+GGG | 0.661080 | 1_1:-29999104 | Msa0017950:intron |
| GGCAACCCAGATGAGCCCAG+AGG | 0.663230 | 1_1:+29999129 | Msa0017960:CDS |
| CATAGCTCCAACTAATCGAG+GGG | 0.663654 | 1_1:-29997968 | Msa0017950:intron |
| AGCAGCAATACAGAAACTAG+AGG | 0.664918 | 1_1:+29999978 | Msa0017960:CDS |
| AGTTGCCAGAACTTCTCACA+AGG | 0.671762 | 1_1:+30000626 | Msa0017960:CDS |
| AATTATCGTCATTGTCAAGG+TGG | 0.691775 | 1_1:+29998072 | Msa0017960:CDS |
| TTTCAGTTCCACAGCCACTG+AGG | 0.695040 | 1_1:+29998271 | Msa0017960:CDS |
| CTAAATGGGAAGATGCGGAG+AGG | 0.704130 | 1_1:+29998205 | Msa0017960:CDS |
| TTCGACTTAGGTCTCCTCAG+TGG | 0.720239 | 1_1:-29998285 | Msa0017950:intron |
| AACGTGTAACCATGACAAGG+TGG | 0.733238 | 1_1:+29999278 | Msa0017960:CDS |
| AAGGTGGTCCAAGAAACACA+AGG | 0.772366 | 1_1:+29999294 | Msa0017960:CDS |
| ATGAACGTGTAACCATGACA+AGG | 0.775798 | 1_1:+29999275 | Msa0017960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATTCTAAACAATCA+AGG | - | chr1_1:29998761-29998780 | Msa0017950:intron | 15.0% |
| !!! | TAAAGAATTTTCTATTTTCT+AGG | - | chr1_1:29999789-29999808 | Msa0017950:intron | 15.0% |
| !!! | TATTATCTTAAGTTTCATTT+TGG | + | chr1_1:30000092-30000111 | Msa0017960:intron | 15.0% |
| !!! | ATTATCTTAAGTTTCATTTT+GGG | + | chr1_1:30000093-30000112 | Msa0017960:intron | 15.0% |
| !!! | ATTACTTTCCTTTATTTTTA+AGG | - | chr1_1:30000449-30000468 | Msa0017950:intron | 15.0% |
| !!! | TACATAATTTAGAATTTGAA+GGG | + | chr1_1:30000858-30000877 | Msa0017960:intron | 15.0% |
| !! | AATAATATATGTATGTACTT+AGG | + | chr1_1:30001349-30001368 | Msa0017960:three_prime_UTR | 15.0% |
| !!! | CTTTATTTAATAAGCAAGAT+CGG | + | chr1_1:29997884-29997903 | Msa0017960:five_prime_UTR | 20.0% |
| !!! | TTTAGAATTTTAATATGCTC+TGG | + | chr1_1:29998767-29998786 | Msa0017960:intron | 20.0% |
| !!! | TTTTTTCATCTGCTAAATAA+AGG | + | chr1_1:29999460-29999479 | Msa0017960:intron | 20.0% |
| !!! | TCTTTATATGACATTGATTT+CGG | - | chr1_1:29999510-29999529 | Msa0017950:intron | 20.0% |
| !! | AAGATAATATATGTGTATGT+AGG | - | chr1_1:30000081-30000100 | Msa0017950:intron | 20.0% |
| !! | TATGATGAAGTAAAAAAAAG+TGG | - | chr1_1:30000349-30000368 | Msa0017950:intron | 20.0% |
| !!! | CTACATAATTTAGAATTTGA+AGG | + | chr1_1:30000857-30000876 | Msa0017960:intron | 20.0% |
| !! | ATAGTAATTTAGTAAACTTG+AGG | - | chr1_1:30001053-30001072 | Msa0017950:intron | 20.0% |
| !! | TGTAAGTTATGCAAATTTAA+TGG | - | chr1_1:30001091-30001110 | Msa0017950:intron | 20.0% |
| !!! | TTCTTTATGCTTTTTGATTA+AGG | + | chr1_1:30001120-30001139 | Msa0017960:intron | 20.0% |
| ! | ATTCATTAAATCAGAGTCTT+TGG | + | chr1_1:29998814-29998833 | Msa0017960:intron | 25.0% |
| !!! | TATGTTTTGAATCTGATTTG+CGG | + | chr1_1:29998867-29998886 | Msa0017960:intron | 25.0% |
| !!! | TTTTCTTTTCTTTTTCACGT+TGG | + | chr1_1:29999026-29999045 | Msa0017960:intron | 25.0% |
| !!! | TTTCTCTAAAATGGATATCA+GGG | + | chr1_1:29999240-29999259 | Msa0017960:CDS | 25.0% |
| !!! | CACTAAATTTGCTATGTTAT+TGG | + | chr1_1:29999659-29999678 | Msa0017960:intron | 25.0% |
| ! | TTATTACCACCTTTCAAATA+TGG | + | chr1_1:29999735-29999754 | Msa0017960:intron | 25.0% |
| !!! | TTTTCTAGGTTGAATTGAAT+AGG | - | chr1_1:29999775-29999794 | Msa0017950:intron | 25.0% |
| !!! | AAAACTCATATTACTGACTT+AGG | + | chr1_1:29999842-29999861 | Msa0017960:intron | 25.0% |
| !!! | TATTGACTTGCTTTTACTAT+TGG | + | chr1_1:30000202-30000221 | Msa0017960:intron | 25.0% |
| !!! | ATTGACTTGCTTTTACTATT+GGG | + | chr1_1:30000203-30000222 | Msa0017960:intron | 25.0% |
| !!! | CCTTTATTTTTAAGGAGAAA+GGG | - | chr1_1:30000441-30000460 | Msa0017950:intron | 25.0% |
| !!! | TCCTTTATTTTTAAGGAGAA+AGG | - | chr1_1:30000442-30000461 | Msa0017950:intron | 25.0% |
| ! | TTTGTTCATAATCTTATCCA+TGG | - | chr1_1:30000541-30000560 | Msa0017950:intron | 25.0% |
| ! | ATTGTATGCTAATATATTCG+TGG | + | chr1_1:30000791-30000810 | Msa0017960:intron | 25.0% |
| ! | TTACACATAACCTAAAACTA+TGG | - | chr1_1:30000905-30000924 | Msa0017950:intron | 25.0% |
| !! | AAAAAGCATAAAGAAGAACA+AGG | - | chr1_1:30001115-30001134 | Msa0017950:intron | 25.0% |
| ! | TTACTATGTTGACACTAAAT+TGG | + | chr1_1:30001228-30001247 | Msa0017960:three_prime_UTR | 25.0% |
| ! | TGAATATCATCTATAGTAGA+AGG | + | chr1_1:30001449-30001468 | Msa0017960:three_prime_UTR | 25.0% |
| TAAGATTAGCATAACAACCT+CGG | - | chr1_1:29998566-29998585 | Msa0017950:intron | 30.0% | |
| TCACAACTCAAAACTAGATA+AGG | - | chr1_1:29998615-29998634 | Msa0017950:intron | 30.0% | |
| CTGTATTAACTATTGTGATG+TGG | + | chr1_1:29998696-29998715 | Msa0017960:intron | 30.0% | |
| AGAGTCTTTGGATGAAAATT+GGG | + | chr1_1:29998826-29998845 | Msa0017960:intron | 30.0% | |
| ! | GCATAATAGTTTTCATAACG+TGG | - | chr1_1:29998919-29998938 | Msa0017950:intron | 30.0% |
| CACATAATACTAACATGACA+TGG | - | chr1_1:29998971-29998990 | Msa0017950:intron | 30.0% | |
| ! | GAGTATCTCTTTCTCTAAAA+TGG | + | chr1_1:29999231-29999250 | Msa0017960:CDS | 30.0% |
| !! | CTTTCTCTAAAATGGATATC+AGG | + | chr1_1:29999239-29999258 | Msa0017960:CDS | 30.0% |
| TATAATTTCAAGGTAGCTCA+TGG | - | chr1_1:29999605-29999624 | Msa0017950:intron | 30.0% | |
| TGAGCTACCTTGAAATTATA+TGG | + | chr1_1:29999605-29999624 | Msa0017960:intron | 30.0% | |
| CTACCTTGAAATTATATGGT+TGG | + | chr1_1:29999609-29999628 | Msa0017960:intron | 30.0% | |
| ACTCCAACCATATAATTTCA+AGG | - | chr1_1:29999615-29999634 | Msa0017950:intron | 30.0% | |
| CAATCAGTACCATATTTGAA+AGG | - | chr1_1:29999747-29999766 | Msa0017950:intron | 30.0% | |
| !! | AGTAAATTTTGTTTGTCCCA+GGG | + | chr1_1:29999897-29999916 | Msa0017960:intron | 30.0% |
| TAAACAAAGAACCACTTGAA+GGG | + | chr1_1:30000001-30000020 | Msa0017960:intron | 30.0% | |
| TACATAAAAATCCCTTCAAG+TGG | - | chr1_1:30000015-30000034 | Msa0017950:intron | 30.0% | |
| !!! | TCCCTTGTTTTCTTTATTTC+AGG | + | chr1_1:30000120-30000139 | Msa0017960:intron | 30.0% |
| CCCTGAAATAAAGAAAACAA+GGG | - | chr1_1:30000124-30000143 | Msa0017950:intron | 30.0% | |
| !!! | CCCTTGTTTTCTTTATTTCA+GGG | + | chr1_1:30000121-30000140 | Msa0017960:intron | 30.0% |
| ACCCTGAAATAAAGAAAACA+AGG | - | chr1_1:30000125-30000144 | Msa0017950:intron | 30.0% | |
| AAATTGAACTTAGGGAAAGA+GGG | - | chr1_1:30000160-30000179 | Msa0017950:intron | 30.0% | |
| TCTTTCCCTAAGTTCAATTT+CGG | + | chr1_1:30000160-30000179 | Msa0017960:intron | 30.0% | |
| CCCTTTCTCCTTAAAAATAA+AGG | + | chr1_1:30000438-30000457 | Msa0017960:intron | 30.0% | |
| !! | TTTGCTATTTCAGATGAAGT+TGG | + | chr1_1:30000497-30000516 | Msa0017960:intron | 30.0% |
| AGCATACAATTCATCTTACT+AGG | - | chr1_1:30000781-30000800 | Msa0017950:intron | 30.0% | |
| ! | GTCAATTGTACCATAGTTTT+AGG | + | chr1_1:30000892-30000911 | Msa0017960:intron | 30.0% |
| TAGGTTATGTGTAAGTGTAA+AGG | + | chr1_1:30000911-30000930 | Msa0017960:intron | 30.0% | |
| ATTTAATGGCAAGTAGGTAA+GGG | - | chr1_1:30001077-30001096 | Msa0017950:intron | 30.0% | |
| AATTTAATGGCAAGTAGGTA+AGG | - | chr1_1:30001078-30001097 | Msa0017950:intron | 30.0% | |
| ATGCAAATTTAATGGCAAGT+AGG | - | chr1_1:30001083-30001102 | Msa0017950:intron | 30.0% | |
| !! | AGAGGCTTATTTCTAAAGTT+TGG | - | chr1_1:30001375-30001394 | Msa0017950:intron | 30.0% |
| ! | AGGAAAAAGAGTACAAAAAG+AGG | - | chr1_1:30001393-30001412 | Msa0017950:intron | 30.0% |
| TTGAACAGAAACTATCAAGT+AGG | - | chr1_1:30001413-30001432 | Msa0017950:intron | 30.0% | |
| AATGCTAATGCAACTGGAAT+TGG | + | chr1_1:29997934-29997953 | Msa0017960:five_prime_UTR | 35.0% | |
| TATGGTTCAGACTAGGAAAT+CGG | + | chr1_1:29997999-29998018 | Msa0017960:CDS | 35.0% | |
| CCTTGACAATGACGATAATT+CGG | - | chr1_1:29998072-29998091 | Msa0017950:intron | 35.0% | |
| AATTATCGTCATTGTCAAGG+TGG | + | chr1_1:29998072-29998091 | Msa0017960:CDS | 35.0% | |
| ACTGCGTTGTGTTTAAGTAA+TGG | + | chr1_1:29998168-29998187 | Msa0017960:CDS | 35.0% | |
| CTGCGTTGTGTTTAAGTAAT+GGG | + | chr1_1:29998169-29998188 | Msa0017960:CDS | 35.0% | |
| ! | GATGGGTTTACAAATAGTTC+TGG | + | chr1_1:29998435-29998454 | Msa0017960:CDS | 35.0% |
| AAGATTAGCATAACAACCTC+GGG | - | chr1_1:29998565-29998584 | Msa0017950:intron | 35.0% | |
| CAGAGTCTTTGGATGAAAAT+TGG | + | chr1_1:29998825-29998844 | Msa0017960:intron | 35.0% | |
| ATATCATGTACGCAGAAGTA+TGG | - | chr1_1:29999003-29999022 | Msa0017950:intron | 35.0% | |
| CAAACTTCTCCTCTGTAAAT+TGG | - | chr1_1:29999054-29999073 | Msa0017950:intron | 35.0% | |
| GAGAAAGAAGTCCTCATATT+GGG | - | chr1_1:29999172-29999191 | Msa0017950:intron | 35.0% | |
| AGAGAAAGAAGTCCTCATAT+TGG | - | chr1_1:29999173-29999192 | Msa0017950:intron | 35.0% | |
| GGGAAAACTTCACTTCTTAT+TGG | - | chr1_1:29999538-29999557 | Msa0017950:intron | 35.0% | |
| TCAGTACCATATTTGAAAGG+TGG | - | chr1_1:29999744-29999763 | Msa0017950:intron | 35.0% | |
| ! | CTAGGTTGAATTGAATAGGA+TGG | - | chr1_1:29999771-29999790 | Msa0017950:intron | 35.0% |
| CTGGGACAAACAAAATTTAC+TGG | - | chr1_1:29999898-29999917 | Msa0017950:intron | 35.0% | |
| !! | CAGTAAATTTTGTTTGTCCC+AGG | + | chr1_1:29999896-29999915 | Msa0017960:intron | 35.0% |
| ! | CTTTTGCAAATTTTCCCATG+CGG | - | chr1_1:29999947-29999966 | Msa0017950:intron | 35.0% |
| GTAAACAAAGAACCACTTGA+AGG | + | chr1_1:30000000-30000019 | Msa0017960:intron | 35.0% | |
| ATGTAGGAGCAATAATTGCT+TGG | - | chr1_1:30000065-30000084 | Msa0017950:intron | 35.0% | |
| GAAATTGAACTTAGGGAAAG+AGG | - | chr1_1:30000161-30000180 | Msa0017950:intron | 35.0% | |
| GATGACCGAAATTGAACTTA+GGG | - | chr1_1:30000168-30000187 | Msa0017950:intron | 35.0% | |
| AGATGACCGAAATTGAACTT+AGG | - | chr1_1:30000169-30000188 | Msa0017950:intron | 35.0% | |
| !! | GTCTTGTCGGTTTAAGATAA+TGG | - | chr1_1:30000266-30000285 | Msa0017950:intron | 35.0% |
| ! | TAAACCGACAAGACTAGTTA+TGG | + | chr1_1:30000272-30000291 | Msa0017960:intron | 35.0% |
| !! | TAGTCCATAACTAGTCTTGT+CGG | - | chr1_1:30000279-30000298 | Msa0017950:intron | 35.0% |
| ! | ATGGACTAATGTCATTACTG+TGG | + | chr1_1:30000291-30000310 | Msa0017960:intron | 35.0% |
| TGGACTAATGTCATTACTGT+GGG | + | chr1_1:30000292-30000311 | Msa0017960:intron | 35.0% | |
| AAAGGGATTCTTAATGCATG+CGG | - | chr1_1:30000424-30000443 | Msa0017950:intron | 35.0% | |
| ACTGAAATTCGCTCAGAAAA+AGG | + | chr1_1:30000560-30000579 | Msa0017960:CDS | 35.0% | |
| ! | CTCACAAGGTTATGTCATTT+CGG | + | chr1_1:30000640-30000659 | Msa0017960:CDS | 35.0% |
| GAATGCTGTAGAAGCTTAAA+AGG | - | chr1_1:30000712-30000731 | Msa0017950:intron | 35.0% | |
| CAATTCATCTTACTAGGACA+AGG | - | chr1_1:30000775-30000794 | Msa0017950:intron | 35.0% | |
| TAAGATTCGGATGTAAGAGA+AGG | - | chr1_1:30001013-30001032 | Msa0017950:intron | 35.0% | |
| TTACATCCGAATCTTATCCA+TGG | + | chr1_1:30001017-30001036 | Msa0017960:intron | 35.0% | |
| TACATCCGAATCTTATCCAT+GGG | + | chr1_1:30001018-30001037 | Msa0017960:intron | 35.0% | |
| CAAAACCCATGGATAAGATT+CGG | - | chr1_1:30001026-30001045 | Msa0017950:intron | 35.0% | |
| TTGTTCAGATCTAACGAAGC+AGG | - | chr1_1:29997916-29997935 | Msa0017950:intron | 40.0% | |
| CTGAACAATGCTAATGCAAC+TGG | + | chr1_1:29997928-29997947 | Msa0017960:five_prime_UTR | 40.0% | |
| AATGCAACTGGAATTGGAAC+TGG | + | chr1_1:29997940-29997959 | Msa0017960:five_prime_UTR | 40.0% | |
| TCATAGCTCCAACTAATCGA+GGG | - | chr1_1:29997972-29997991 | Msa0017950:intron | 40.0% | |
| TTCATAGCTCCAACTAATCG+AGG | - | chr1_1:29997973-29997992 | Msa0017950:intron | 40.0% | |
| TGGAGCTATGAAGAAGAGTA+TGG | + | chr1_1:29997981-29998000 | Msa0017960:exon | 40.0% | |
| ! | AGAAGAGTATGGTTCAGACT+AGG | + | chr1_1:29997992-29998011 | Msa0017960:CDS | 40.0% |
| ATGGTTCAGACTAGGAAATC+GGG | + | chr1_1:29998000-29998019 | Msa0017960:CDS | 40.0% | |
| CCGAATTATCGTCATTGTCA+AGG | + | chr1_1:29998069-29998088 | Msa0017960:CDS | 40.0% | |
| GTGTTGCAATGCAAAAAGGT+TGG | + | chr1_1:29998094-29998113 | Msa0017960:CDS | 40.0% | |
| !! | GTGGATTTTGAGTCCTGTTT+CGG | + | chr1_1:29998227-29998246 | Msa0017960:CDS | 40.0% |
| !! | TGGATTTTGAGTCCTGTTTC+GGG | + | chr1_1:29998228-29998247 | Msa0017960:CDS | 40.0% |
| AACGAATAATACGCAACACC+AGG | - | chr1_1:29998330-29998349 | Msa0017950:intron | 40.0% | |
| GCATTAACAGCAGCAGAAAA+AGG | - | chr1_1:29998408-29998427 | Msa0017950:intron | 40.0% | |
| ATTTGTAAACCCATCAGCTG+AGG | - | chr1_1:29998430-29998449 | Msa0017950:intron | 40.0% | |
| !! | GGGTTTACAAATAGTTCTGG+TGG | + | chr1_1:29998438-29998457 | Msa0017960:CDS | 40.0% |
| !! | ACAAATAGTTCTGGTGGCAA+TGG | + | chr1_1:29998444-29998463 | Msa0017960:CDS | 40.0% |
| ! | TGTGATGTGGATTGAACTCT+TGG | + | chr1_1:29998709-29998728 | Msa0017960:intron | 40.0% |
| GGAGAAGTTTGATGCTTTCA+AGG | + | chr1_1:29999063-29999082 | Msa0017960:CDS | 40.0% | |
| GTTTGATGCTTTCAAGGATG+CGG | + | chr1_1:29999069-29999088 | Msa0017960:CDS | 40.0% | |
| TTTGATGCTTTCAAGGATGC+GGG | + | chr1_1:29999070-29999089 | Msa0017960:CDS | 40.0% | |
| ATACTCTGCAAATCTGTGAC+GGG | - | chr1_1:29999217-29999236 | Msa0017950:intron | 40.0% | |
| GATACTCTGCAAATCTGTGA+CGG | - | chr1_1:29999218-29999237 | Msa0017950:intron | 40.0% | |
| ATGAACGTGTAACCATGACA+AGG | + | chr1_1:29999275-29999294 | Msa0017960:CDS | 40.0% | |
| TGAACCTCTACCAGTGAATA+GGG | - | chr1_1:29999320-29999339 | Msa0017950:intron | 40.0% | |
| GTTCAGAAAATGTTGACAGC+TGG | + | chr1_1:29999335-29999354 | Msa0017960:CDS | 40.0% | |
| ! | ATTTTCCCATGCGGTGATTT+TGG | - | chr1_1:29999938-29999957 | Msa0017950:intron | 40.0% |
| CGCATGGGAAAATTTGCAAA+AGG | + | chr1_1:29999945-29999964 | Msa0017960:CDS | 40.0% | |
| AGCAGCAATACAGAAACTAG+AGG | + | chr1_1:29999978-29999997 | Msa0017960:CDS | 40.0% | |
| GATGATCACTTGAGCTAGTA+GGG | - | chr1_1:30000043-30000062 | Msa0017950:intron | 40.0% | |
| ! | ATTACTGTGGGCTGTCTAAT+AGG | + | chr1_1:30000304-30000323 | Msa0017960:intron | 40.0% |
| AGAAAAAGGCTCAGGAAATG+AGG | + | chr1_1:30000574-30000593 | Msa0017960:CDS | 40.0% | |
| CATAACCTTGTGAGAAGTTC+TGG | - | chr1_1:30000634-30000653 | Msa0017950:intron | 40.0% | |
| ! | AGAAGCTTAAAAGGCATGAC+AGG | - | chr1_1:30000703-30000722 | Msa0017950:intron | 40.0% |
| CTAGCTTCACTTGAACAGAA+AGG | - | chr1_1:30000734-30000753 | Msa0017950:intron | 40.0% | |
| CTTTCTGTTCAAGTGAAGCT+AGG | + | chr1_1:30000732-30000751 | Msa0017960:three_prime_UTR | 40.0% | |
| ! | AGGAATCTGAAGCAGGAAAT+GGG | - | chr1_1:30000993-30001012 | Msa0017950:intron | 40.0% |
| ! | AAGGAATCTGAAGCAGGAAA+TGG | - | chr1_1:30000994-30001013 | Msa0017950:intron | 40.0% |
| ! | TAAGAGAAGGAATCTGAAGC+AGG | - | chr1_1:30001000-30001019 | Msa0017950:intron | 40.0% |
| ACCAGGTTTCAGAAATCAGA+AGG | + | chr1_1:30001157-30001176 | Msa0017960:intron | 40.0% | |
| !! | TCCTTCTGATTTCTGAAACC+TGG | - | chr1_1:30001161-30001180 | Msa0017950:intron | 40.0% |
| TGAAGTACAAGCACTTTAGC+CGG | + | chr1_1:30001274-30001293 | Msa0017960:three_prime_UTR | 40.0% | |
| ! | ACAAGGCACTTAGATTCTAC+CGG | - | chr1_1:30001296-30001315 | Msa0017950:intron | 40.0% |
| TCTTTGAATACGAACTCCCA+AGG | - | chr1_1:30001327-30001346 | Msa0017950:intron | 40.0% | |
| CATAGCTCCAACTAATCGAG+GGG | - | chr1_1:29997971-29997990 | Msa0017950:intron | 45.0% | |
| TCAGACTAGGAAATCGGGAA+CGG | + | chr1_1:29998005-29998024 | Msa0017960:CDS | 45.0% | |
| TAATTCGGAGTTCCAGGACT+CGG | - | chr1_1:29998057-29998076 | Msa0017950:intron | 45.0% | |
| TGACGATAATTCGGAGTTCC+AGG | - | chr1_1:29998063-29998082 | Msa0017950:intron | 45.0% | |
| !! | GGTGGTGTTGCAATGCAAAA+AGG | + | chr1_1:29998090-29998109 | Msa0017960:CDS | 45.0% |
| !! | AGTTCTGAGCGAGTTGTAAG+TGG | + | chr1_1:29998117-29998136 | Msa0017960:CDS | 45.0% |
| ! | GTTCTGAGCGAGTTGTAAGT+GGG | + | chr1_1:29998118-29998137 | Msa0017960:CDS | 45.0% |
| TTCTGAGCGAGTTGTAAGTG+GGG | + | chr1_1:29998119-29998138 | Msa0017960:CDS | 45.0% | |
| ! | CACCATTACCAACTTGCTTC+CGG | - | chr1_1:29998146-29998165 | Msa0017950:intron | 45.0% |
| GAGAACGTTGCCGTCTAAAT+GGG | + | chr1_1:29998191-29998210 | Msa0017960:CDS | 45.0% | |
| TCCGCATCTTCCCATTTAGA+CGG | - | chr1_1:29998204-29998223 | Msa0017950:intron | 45.0% | |
| !! | GGATTTTGAGTCCTGTTTCG+GGG | + | chr1_1:29998229-29998248 | Msa0017960:CDS | 45.0% |
| !! | GATTTTGAGTCCTGTTTCGG+GGG | + | chr1_1:29998230-29998249 | Msa0017960:CDS | 45.0% |
| !! | ATTTTGAGTCCTGTTTCGGG+GGG | + | chr1_1:29998231-29998250 | Msa0017960:CDS | 45.0% |
| GAATAATACGCAACACCAGG+TGG | - | chr1_1:29998327-29998346 | Msa0017950:intron | 45.0% | |
| TATTCGTTGTATTCGCCTGC+AGG | + | chr1_1:29998342-29998361 | Msa0017960:CDS | 45.0% | |
| CCATCAAAAAAGTGACCTGC+AGG | - | chr1_1:29998360-29998379 | Msa0017950:intron | 45.0% | |
| !!! | CCTGCAGGTCACTTTTTTGA+TGG | + | chr1_1:29998357-29998376 | Msa0017960:CDS | 45.0% |
| !!! | GCAGGTCACTTTTTTGATGG+AGG | + | chr1_1:29998360-29998379 | Msa0017960:CDS | 45.0% |
| CTGTTAATGCCTCAGCTGAT+GGG | + | chr1_1:29998418-29998437 | Msa0017960:CDS | 45.0% | |
| !! | AATAGTTCTGGTGGCAATGG+TGG | + | chr1_1:29998447-29998466 | Msa0017960:CDS | 45.0% |
| TTAGCATAACAACCTCGGGA+AGG | - | chr1_1:29998561-29998580 | Msa0017950:intron | 45.0% | |
| !! | ACGTTGGCTCCAATTTACAG+AGG | + | chr1_1:29999042-29999061 | Msa0017960:intron | 45.0% |
| TGAAACAGCAGGGGATACAT+TGG | - | chr1_1:29999098-29999117 | Msa0017950:intron | 45.0% | |
| !! | TATCCCCTGCTGTTTCAAGA+AGG | + | chr1_1:29999101-29999120 | Msa0017960:CDS | 45.0% |
| !! | ATCCCCTGCTGTTTCAAGAA+GGG | + | chr1_1:29999102-29999121 | Msa0017960:CDS | 45.0% |
| TGTCCCTTCTTGAAACAGCA+GGG | - | chr1_1:29999108-29999127 | Msa0017950:intron | 45.0% | |
| ATGTCCCTTCTTGAAACAGC+AGG | - | chr1_1:29999109-29999128 | Msa0017950:intron | 45.0% | |
| !! | TGCTGTTTCAAGAAGGGACA+TGG | + | chr1_1:29999108-29999127 | Msa0017960:CDS | 45.0% |
| AGAAGTCCTCATATTGGGAG+AGG | - | chr1_1:29999167-29999186 | Msa0017950:intron | 45.0% | |
| AATGGATATCAGGGATGTGC+AGG | + | chr1_1:29999249-29999268 | Msa0017960:CDS | 45.0% | |
| AACGTGTAACCATGACAAGG+TGG | + | chr1_1:29999278-29999297 | Msa0017960:CDS | 45.0% | |
| TTTCTTGGACCACCTTGTCA+TGG | - | chr1_1:29999290-29999309 | Msa0017950:intron | 45.0% | |
| AAGGTGGTCCAAGAAACACA+AGG | + | chr1_1:29999294-29999313 | Msa0017960:CDS | 45.0% | |
| ! | GAATAGGGCCTTGTGTTTCT+TGG | - | chr1_1:29999305-29999324 | Msa0017950:intron | 45.0% |
| AAACACAAGGCCCTATTCAC+TGG | + | chr1_1:29999307-29999326 | Msa0017960:CDS | 45.0% | |
| CTGAACCTCTACCAGTGAAT+AGG | - | chr1_1:29999321-29999340 | Msa0017950:intron | 45.0% | |
| CAGCACTCGATCTTCATCTT+GGG | + | chr1_1:29999372-29999391 | Msa0017960:CDS | 45.0% | |
| TCAAGGTAGCTCATGGCATT+TGG | - | chr1_1:29999598-29999617 | Msa0017950:intron | 45.0% | |
| TTGTTTGTCCCAGGGCTAAA+AGG | + | chr1_1:29999905-29999924 | Msa0017960:intron | 45.0% | |
| TGTTTGTCCCAGGGCTAAAA+GGG | + | chr1_1:29999906-29999925 | Msa0017960:intron | 45.0% | |
| GGATGATCACTTGAGCTAGT+AGG | - | chr1_1:30000044-30000063 | Msa0017950:intron | 45.0% | |
| AAAGAAGCGAGCATCTTCCA+TGG | + | chr1_1:30000521-30000540 | Msa0017960:CDS | 45.0% | |
| ATTCGCTCAGAAAAAGGCTC+AGG | + | chr1_1:30000566-30000585 | Msa0017960:CDS | 45.0% | |
| AGTTGCCAGAACTTCTCACA+AGG | + | chr1_1:30000626-30000645 | Msa0017960:CDS | 45.0% | |
| ! | GTTATGTCATTTCGGAGAGC+CGG | + | chr1_1:30000648-30000667 | Msa0017960:CDS | 45.0% |
| AACCACTCAAAGAACCCATC+TGG | - | chr1_1:30000674-30000693 | Msa0017950:intron | 45.0% | |
| ! | GGAATCTGAAGCAGGAAATG+GGG | - | chr1_1:30000992-30001011 | Msa0017950:intron | 45.0% |
| CTTGAGGCTATCAAAACCCA+TGG | - | chr1_1:30001037-30001056 | Msa0017950:intron | 45.0% | |
| AATACGAACTCCCAAGGATG+AGG | - | chr1_1:30001321-30001340 | Msa0017950:intron | 45.0% | |
| GGTTCTTCCCCTCGATTAGT+TGG | + | chr1_1:29997961-29997980 | Msa0017960:five_prime_UTR | 50.0% | |
| CAGACTAGGAAATCGGGAAC+GGG | + | chr1_1:29998006-29998025 | Msa0017960:CDS | 50.0% | |
| ACTGGTACATTTCCGAGTCC+TGG | + | chr1_1:29998042-29998061 | Msa0017960:CDS | 50.0% | |
| TCTGAGCGAGTTGTAAGTGG+GGG | + | chr1_1:29998120-29998139 | Msa0017960:CDS | 50.0% | |
| GGAGAACGTTGCCGTCTAAA+TGG | + | chr1_1:29998190-29998209 | Msa0017960:CDS | 50.0% | |
| GCCGTCTAAATGGGAAGATG+CGG | + | chr1_1:29998200-29998219 | Msa0017960:CDS | 50.0% | |
| CTAAATGGGAAGATGCGGAG+AGG | + | chr1_1:29998205-29998224 | Msa0017960:CDS | 50.0% | |
| TTTCAGTTCCACAGCCACTG+AGG | + | chr1_1:29998271-29998290 | Msa0017960:CDS | 50.0% | |
| TTCGACTTAGGTCTCCTCAG+TGG | - | chr1_1:29998288-29998307 | Msa0017950:intron | 50.0% | |
| AGGAGACCTAAGTCGAAGAG+TGG | + | chr1_1:29998291-29998310 | Msa0017960:CDS | 50.0% | |
| GCTGTTAATGCCTCAGCTGA+TGG | + | chr1_1:29998417-29998436 | Msa0017960:CDS | 50.0% | |
| ATGCAAGGATCCGTTCGTGT+GGG | - | chr1_1:29998483-29998502 | Msa0017950:intron | 50.0% | |
| GCTCGCTCAGTTAGTGTACA+TGG | + | chr1_1:29998504-29998523 | Msa0017960:CDS | 50.0% | |
| ACATGGATGCTCTCAGATGC+AGG | + | chr1_1:29998521-29998540 | Msa0017960:CDS | 50.0% | |
| CATGGATGCTCTCAGATGCA+GGG | + | chr1_1:29998522-29998541 | Msa0017960:CDS | 50.0% | |
| GTCCCTTCTTGAAACAGCAG+GGG | - | chr1_1:29999107-29999126 | Msa0017950:intron | 50.0% | |
| CATGCTCCTCTCCCAATATG+AGG | + | chr1_1:29999158-29999177 | Msa0017960:CDS | 50.0% | |
| AAGGCCCTATTCACTGGTAG+AGG | + | chr1_1:29999313-29999332 | Msa0017960:CDS | 50.0% | |
| CCAAGATGAAGATCGAGTGC+TGG | - | chr1_1:29999374-29999393 | Msa0017950:intron | 50.0% | |
| CCAGCACTCGATCTTCATCT+TGG | + | chr1_1:29999371-29999390 | Msa0017960:CDS | 50.0% | |
| ! | AAGGGGGGAGTTGACTTCAA+CGG | - | chr1_1:29999559-29999578 | Msa0017950:intron | 50.0% |
| TTAAGAGCAGAGCGAGAAGG+GGG | - | chr1_1:29999575-29999594 | Msa0017950:intron | 50.0% | |
| GTTAAGAGCAGAGCGAGAAG+GGG | - | chr1_1:29999576-29999595 | Msa0017950:intron | 50.0% | |
| GGTTAAGAGCAGAGCGAGAA+GGG | - | chr1_1:29999577-29999596 | Msa0017950:intron | 50.0% | |
| TGGTTAAGAGCAGAGCGAGA+AGG | - | chr1_1:29999578-29999597 | Msa0017950:intron | 50.0% | |
| AGGAAGCCAAAATCACCGCA+TGG | + | chr1_1:29999929-29999948 | Msa0017960:CDS | 50.0% | |
| GGAAGCCAAAATCACCGCAT+GGG | + | chr1_1:29999930-29999949 | Msa0017960:CDS | 50.0% | |
| GAGTTCAGTTTCAGTCGACC+AGG | + | chr1_1:30000596-30000615 | Msa0017960:CDS | 50.0% | |
| TTCTGGCAACTTGATGAGCC+TGG | - | chr1_1:30000617-30000636 | Msa0017950:intron | 50.0% | |
| ACTCAAAGAACCCATCTGGC+CGG | - | chr1_1:30000670-30000689 | Msa0017950:intron | 50.0% | |
| TGCCTTGTAGCCTCATCCTT+GGG | + | chr1_1:30001308-30001327 | Msa0017960:three_prime_UTR | 50.0% | |
| ATCGGGAACGGGTACAGTGA+CGG | + | chr1_1:29998017-29998036 | Msa0017960:CDS | 55.0% | |
| !! | GGCCGGAAGCAAGTTGGTAA+TGG | + | chr1_1:29998141-29998160 | Msa0017960:CDS | 55.0% |
| AATGGGAAGATGCGGAGAGG+TGG | + | chr1_1:29998208-29998227 | Msa0017960:CDS | 55.0% | |
| TTAGGTCTCCTCAGTGGCTG+TGG | - | chr1_1:29998282-29998301 | Msa0017950:intron | 55.0% | |
| AGCGGACCACTCTTCGACTT+AGG | - | chr1_1:29998300-29998319 | Msa0017950:intron | 55.0% | |
| AAGTCGAAGAGTGGTCCGCT+TGG | + | chr1_1:29998300-29998319 | Msa0017960:CDS | 55.0% | |
| ! | AGTTCTGGTGGCAATGGTGG+TGG | + | chr1_1:29998450-29998469 | Msa0017960:CDS | 55.0% |
| CATGCAAGGATCCGTTCGTG+TGG | - | chr1_1:29998484-29998503 | Msa0017950:intron | 55.0% | |
| CACACGAACGGATCCTTGCA+TGG | + | chr1_1:29998482-29998501 | Msa0017960:CDS | 55.0% | |
| CTAACTGAGCGAGCCATGCA+AGG | - | chr1_1:29998498-29998517 | Msa0017950:intron | 55.0% | |
| !! | CAATCGTCGATTCCTTCCCG+AGG | + | chr1_1:29998546-29998565 | Msa0017960:CDS | 55.0% |
| ! | AGGAGCATGAGCTACCCTCT+GGG | - | chr1_1:29999147-29999166 | Msa0017950:intron | 55.0% |
| !! | AAATCTGTGACGGGCAGGGA+AGG | - | chr1_1:29999208-29999227 | Msa0017950:intron | 55.0% |
| !! | CTGCAAATCTGTGACGGGCA+GGG | - | chr1_1:29999212-29999231 | Msa0017950:intron | 55.0% |
| !! | TCTGCAAATCTGTGACGGGC+AGG | - | chr1_1:29999213-29999232 | Msa0017950:intron | 55.0% |
| GGATATCAGGGATGTGCAGG+TGG | + | chr1_1:29999252-29999271 | Msa0017960:CDS | 55.0% | |
| ! | AGGGGGGAGTTGACTTCAAC+GGG | - | chr1_1:29999558-29999577 | Msa0017950:intron | 55.0% |
| TAAGAGCAGAGCGAGAAGGG+GGG | - | chr1_1:29999574-29999593 | Msa0017950:intron | 55.0% | |
| TTGTCCCAGGGCTAAAAGGG+AGG | + | chr1_1:29999909-29999928 | Msa0017960:intron | 55.0% | |
| ! | GCTTCCTCCCTTTTAGCCCT+GGG | - | chr1_1:29999916-29999935 | Msa0017950:intron | 55.0% |
| ! | GGCCAGATGGGTTCTTTGAG+TGG | + | chr1_1:30000669-30000688 | Msa0017960:CDS | 55.0% |
| AGGCTGTTGCATGCTTGACC+AGG | + | chr1_1:30001140-30001159 | Msa0017960:intron | 55.0% | |
| GTGCCTTGTAGCCTCATCCT+TGG | + | chr1_1:30001307-30001326 | Msa0017960:three_prime_UTR | 55.0% | |
| CTCCCAAGGATGAGGCTACA+AGG | - | chr1_1:30001313-30001332 | Msa0017950:intron | 55.0% | |
| TCGGGAACGGGTACAGTGAC+GGG | + | chr1_1:29998018-29998037 | Msa0017960:CDS | 60.0% | |
| AGCGAGTTGTAAGTGGGGGC+CGG | + | chr1_1:29998124-29998143 | Msa0017960:CDS | 60.0% | |
| AGTCCTGTTTCGGGGGGTGA+TGG | + | chr1_1:29998237-29998256 | Msa0017960:CDS | 60.0% | |
| GTTCCATCACCCCCCGAAAC+AGG | - | chr1_1:29998243-29998262 | Msa0017950:intron | 60.0% | |
| !! | GTTTCGGGGGGTGATGGAAC+TGG | + | chr1_1:29998243-29998262 | Msa0017960:CDS | 60.0% |
| !! | GGGGGGTGATGGAACTGGAA+GGG | + | chr1_1:29998248-29998267 | Msa0017960:CDS | 60.0% |
| GCAACACCAGGTGGACCAAG+CGG | - | chr1_1:29998318-29998337 | Msa0017950:intron | 60.0% | |
| !! | TCTGGTGGCAATGGTGGTGG+AGG | + | chr1_1:29998453-29998472 | Msa0017960:CDS | 60.0% |
| !! | CTGGTGGCAATGGTGGTGGA+GGG | + | chr1_1:29998454-29998473 | Msa0017960:CDS | 60.0% |
| TGGAGGGCTTCCCACACGAA+CGG | + | chr1_1:29998470-29998489 | Msa0017960:CDS | 60.0% | |
| GCAACCCAGATGAGCCCAGA+GGG | + | chr1_1:29999130-29999149 | Msa0017960:CDS | 60.0% | |
| GCTACCCTCTGGGCTCATCT+GGG | - | chr1_1:29999137-29999156 | Msa0017950:intron | 60.0% | |
| AGCTACCCTCTGGGCTCATC+TGG | - | chr1_1:29999138-29999157 | Msa0017950:intron | 60.0% | |
| ! | GAGGAGCATGAGCTACCCTC+TGG | - | chr1_1:29999148-29999167 | Msa0017950:intron | 60.0% |
| ! | GGCTTCCTCCCTTTTAGCCC+TGG | - | chr1_1:29999917-29999936 | Msa0017950:intron | 60.0% |
| ATTTCGGAGAGCCGGCCAGA+TGG | + | chr1_1:30000656-30000675 | Msa0017960:CDS | 60.0% | |
| TTTCGGAGAGCCGGCCAGAT+GGG | + | chr1_1:30000657-30000676 | Msa0017960:CDS | 60.0% | |
| CGGGAACGGGTACAGTGACG+GGG | + | chr1_1:29998019-29998038 | Msa0017960:CDS | 65.0% | |
| ! | ACGGGTACAGTGACGGGGAC+TGG | + | chr1_1:29998024-29998043 | Msa0017960:CDS | 65.0% |
| AGTGGGGGCCGGAAGCAAGT+TGG | + | chr1_1:29998135-29998154 | Msa0017960:CDS | 65.0% | |
| !! | CGGGGGGTGATGGAACTGGA+AGG | + | chr1_1:29998247-29998266 | Msa0017960:CDS | 65.0% |
| AGTGGTCCGCTTGGTCCACC+TGG | + | chr1_1:29998309-29998328 | Msa0017960:CDS | 65.0% | |
| GGCAACCCAGATGAGCCCAG+AGG | + | chr1_1:29999129-29999148 | Msa0017960:CDS | 65.0% | |
| !! | TCTGTGACGGGCAGGGAAGG+TGG | - | chr1_1:29999205-29999224 | Msa0017950:intron | 65.0% |
| GACGGGCAGGGAAGGTGGAG+TGG | - | chr1_1:29999200-29999219 | Msa0017950:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29997851 | 30001512 | 29997851 | ID=Msa0017960;Name=Msa0017960 |
| chr1_1 | mRNA | 29997851 | 30001512 | 29997851 | ID=Msa0017960-mRNA-1;Parent=Msa0017960;Name=Msa0017960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137|1|1|1|0.75|0.6|5|388|410 |
| chr1_1 | exon | 29997851 | 29998567 | 29997851 | ID=Msa0017960-mRNA-1:exon:9998;Parent=Msa0017960-mRNA-1 |
| chr1_1 | exon | 29999062 | 29999425 | 29999062 | ID=Msa0017960-mRNA-1:exon:9999;Parent=Msa0017960-mRNA-1 |
| chr1_1 | exon | 29999918 | 29999999 | 29999918 | ID=Msa0017960-mRNA-1:exon:10000;Parent=Msa0017960-mRNA-1 |
| chr1_1 | exon | 30000510 | 30000753 | 30000510 | ID=Msa0017960-mRNA-1:exon:10001;Parent=Msa0017960-mRNA-1 |
| chr1_1 | exon | 30001162 | 30001512 | 30001162 | ID=Msa0017960-mRNA-1:exon:10002;Parent=Msa0017960-mRNA-1 |
| chr1_1 | five_prime_UTR | 29997851 | 29997987 | 29997851 | ID=Msa0017960-mRNA-1:five_prime_utr;Parent=Msa0017960-mRNA-1 |
| chr1_1 | CDS | 29997988 | 29998567 | 29997988 | ID=Msa0017960-mRNA-1:cds;Parent=Msa0017960-mRNA-1 |
| chr1_1 | CDS | 29999062 | 29999425 | 29999062 | ID=Msa0017960-mRNA-1:cds;Parent=Msa0017960-mRNA-1 |
| chr1_1 | CDS | 29999918 | 29999999 | 29999918 | ID=Msa0017960-mRNA-1:cds;Parent=Msa0017960-mRNA-1 |
| chr1_1 | CDS | 30000510 | 30000716 | 30000510 | ID=Msa0017960-mRNA-1:cds;Parent=Msa0017960-mRNA-1 |
| chr1_1 | three_prime_UTR | 30000717 | 30000753 | 30000717 | ID=Msa0017960-mRNA-1:three_prime_utr;Parent=Msa0017960-mRNA-1 |
| chr1_1 | three_prime_UTR | 30001162 | 30001512 | 30001162 | ID=Msa0017960-mRNA-1:three_prime_utr;Parent=Msa0017960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
