Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030150 | sp|Q9FSF0|MDH_TOBAC | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030150 | Msa0042980 | 0.825084 | 5.683784e-54 | -8.615850e-47 |
| Msa0030150 | Msa0125640 | 0.975056 | 2.935180e-139 | -8.615850e-47 |
| Msa0030150 | Msa0136890 | 0.857963 | 1.140297e-62 | -8.615850e-47 |
| Msa0030150 | Msa0137710 | 0.805133 | 1.546394e-49 | -8.615850e-47 |
| Msa0030150 | Msa0170110 | 0.853909 | 1.749069e-61 | -8.615850e-47 |
| Msa0030150 | Msa0389610 | 0.833279 | 5.841318e-56 | -8.615850e-47 |
| Msa0030150 | Msa0412840 | -0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0030150 | Msa0457510 | -0.818951 | 1.499538e-52 | -8.615850e-47 |
| Msa0030150 | Msa0460400 | 0.807088 | 5.996661e-50 | -8.615850e-47 |
| Msa0030150 | Msa0473730 | 0.817376 | 3.404916e-52 | -8.615850e-47 |
| Msa0030150 | Msa0528020 | 0.816952 | 4.241664e-52 | -8.615850e-47 |
| Msa0030150 | Msa0528610 | 0.833690 | 4.613936e-56 | -8.615850e-47 |
| Msa0030150 | Msa0946280 | 0.821981 | 3.024067e-53 | -8.615850e-47 |
| Msa0030150 | Msa0984220 | 0.814690 | 1.355095e-51 | -8.615850e-47 |
| Msa0030150 | Msa1124540 | 0.802434 | 5.620677e-49 | -8.615850e-47 |
| Msa0030150 | Msa1191050 | 0.833461 | 5.263759e-56 | -8.615850e-47 |
| Msa0030150 | Msa1244720 | 0.818627 | 1.776086e-52 | -8.615850e-47 |
| Msa0030150 | Msa1361280 | 0.820095 | 8.218326e-53 | -8.615850e-47 |
| Msa0030150 | Msa1364330 | 0.842827 | 2.038072e-58 | -8.615850e-47 |
| Msa0030150 | Msa1403340 | -0.816272 | 6.024690e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030150 | MtrunA17_Chr1g0187751 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 681 |
| Msa0030150 | MtrunA17_Chr1g0167651 | 93.675 | 332 | 21 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Msa0030150 | MtrunA17_Chr8g0334691 | 84.091 | 308 | 49 | 0 | 24 | 331 | 1 | 308 | 0.0 | 522 |
| Msa0030150 | MtrunA17_Chr1g0197371 | 39.818 | 329 | 191 | 4 | 3 | 328 | 92 | 416 | 4.64e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030150 | AT1G04410.1 | 90.060 | 332 | 33 | 0 | 1 | 332 | 1 | 332 | 0.0 | 605 |
| Msa0030150 | AT5G43330.1 | 89.458 | 332 | 35 | 0 | 1 | 332 | 1 | 332 | 0.0 | 597 |
| Msa0030150 | AT5G56720.1 | 72.590 | 332 | 91 | 0 | 1 | 332 | 40 | 371 | 0.0 | 510 |
| Msa0030150 | AT5G58330.2 | 41.641 | 329 | 185 | 4 | 3 | 328 | 96 | 420 | 5.39e-79 | 248 |
| Msa0030150 | AT5G58330.1 | 41.641 | 329 | 185 | 4 | 3 | 328 | 97 | 421 | 6.03e-79 | 248 |
| Msa0030150 | AT5G58330.3 | 41.587 | 315 | 177 | 4 | 17 | 328 | 2 | 312 | 5.19e-76 | 237 |
Find 123 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCACTTATTCACTTAA+AGG | 0.174972 | 1_1:-56196138 | None:intergenic |
| TTTGAAAAGTTTATGTCTTC+TGG | 0.178098 | 1_1:+56196029 | Msa0030150:three_prime_UTR |
| CAAGTGATGGTTTGCATAAA+AGG | 0.206528 | 1_1:-56195929 | None:intergenic |
| GCTGCATTCCCTCTTCTTAA+AGG | 0.234412 | 1_1:+56193675 | Msa0030150:CDS |
| TGGAGGATCACGGGCTGGTC+AGG | 0.252087 | 1_1:-56193591 | None:intergenic |
| ATCACTGAACGGTGTTAAAA+TGG | 0.283888 | 1_1:+56193641 | Msa0030150:CDS |
| TGACAAGATTGGACCATAAC+AGG | 0.286946 | 1_1:+56194778 | Msa0030150:CDS |
| CACATTAGAGATTGGGTTCT+AGG | 0.308508 | 1_1:+56195186 | Msa0030150:CDS |
| CATTTCTTGTTTGACAAGAT+TGG | 0.308718 | 1_1:+56194767 | Msa0030150:CDS |
| ATCAAGGCATTGGTGTTTGC+CGG | 0.326996 | 1_1:-56194708 | None:intergenic |
| TGCAATATCATCAGGGAACC+TGG | 0.363492 | 1_1:+56195300 | Msa0030150:intron |
| TGGAGTCAATATTGCTGTTA+TGG | 0.370670 | 1_1:+56193867 | Msa0030150:CDS |
| CTCTTGTCCCTATGATTGCC+AGG | 0.371373 | 1_1:+56193553 | Msa0030150:CDS |
| AACATTTATCAATAAAATAG+TGG | 0.376516 | 1_1:-56196236 | None:intergenic |
| TTTCCTTGTGTATTTGTCAA+TGG | 0.378788 | 1_1:+56195828 | Msa0030150:three_prime_UTR |
| ACAGTTGCGTGGTTGACATC+AGG | 0.383245 | 1_1:-56194891 | None:intergenic |
| TGATTGCAGCACCCCGTTGT+TGG | 0.384508 | 1_1:-56195110 | None:intergenic |
| TTTGACCCAGAGCCCTGTTA+TGG | 0.392891 | 1_1:-56194791 | None:intergenic |
| ATCACTCCCCTGGCAATCAT+AGG | 0.399565 | 1_1:-56193561 | None:intergenic |
| GCTTTCTGAGGAGAAGGCTT+TGG | 0.399799 | 1_1:+56195777 | Msa0030150:CDS |
| CTTGTGACCACATTAGAGAT+TGG | 0.400822 | 1_1:+56195178 | Msa0030150:CDS |
| CATAGCTACCGTCCAACAAC+GGG | 0.401578 | 1_1:+56195098 | Msa0030150:CDS |
| AAGTGAATAAGTGGGAAATT+CGG | 0.409072 | 1_1:+56196143 | Msa0030150:three_prime_UTR |
| CACCAATGCCTTGATCTTGA+AGG | 0.415103 | 1_1:+56194716 | Msa0030150:CDS |
| TTTAACACCGTTCAGTGATT+CGG | 0.419237 | 1_1:-56193637 | None:intergenic |
| CACTCCTTTAAGTGAATAAG+TGG | 0.421061 | 1_1:+56196134 | Msa0030150:three_prime_UTR |
| GGCATTGGTGTTTGCCGGGT+TGG | 0.424208 | 1_1:-56194703 | None:intergenic |
| GCGTGAAACGACACCGCTTT+CGG | 0.431818 | 1_1:-56192656 | None:intergenic |
| GAGCATATGTCATTTGAGTC+AGG | 0.431913 | 1_1:+56195993 | Msa0030150:three_prime_UTR |
| CCTGTTCGTGTTCTTGTCAC+TGG | 0.433814 | 1_1:+56192837 | Msa0030150:CDS |
| CCAGTGACAAGAACACGAAC+AGG | 0.438629 | 1_1:-56192837 | None:intergenic |
| TTGTGACCACATTAGAGATT+GGG | 0.444343 | 1_1:+56195179 | Msa0030150:CDS |
| ACTATTTGTCTATTTATTCA+CGG | 0.445259 | 1_1:-56192709 | None:intergenic |
| CCGTTCAGTGATTCGGCTGC+TGG | 0.450461 | 1_1:-56193630 | None:intergenic |
| TCGCCATTGCGAGTTGTGAC+AGG | 0.451805 | 1_1:-56195386 | None:intergenic |
| TTTCTCAAGAGCAGAAGCTT+GGG | 0.453532 | 1_1:-56193962 | None:intergenic |
| GGAGTGAATTTATAGCCAAC+AGG | 0.454153 | 1_1:-56196117 | None:intergenic |
| GTTTCTCAAGAGCAGAAGCT+TGG | 0.456679 | 1_1:-56193963 | None:intergenic |
| ATTGGACCATAACAGGGCTC+TGG | 0.463189 | 1_1:+56194785 | Msa0030150:CDS |
| AGAGAATATTCTATCTTGCT+TGG | 0.464290 | 1_1:+56192577 | Msa0030150:five_prime_UTR |
| AATACGGAGCATAACTTAGT+TGG | 0.470056 | 1_1:-56196203 | None:intergenic |
| TTCAGTGATTCGGCTGCTGG+TGG | 0.473142 | 1_1:-56193627 | None:intergenic |
| TACAATTACAATACAAGTGA+TGG | 0.474011 | 1_1:-56195942 | None:intergenic |
| AGATATTGAGAAACTCTTGA+TGG | 0.476838 | 1_1:+56195897 | Msa0030150:three_prime_UTR |
| AATATTGCTGTTATGGTTGG+TGG | 0.480289 | 1_1:+56193874 | Msa0030150:CDS |
| GTCAATATTGCTGTTATGGT+TGG | 0.483183 | 1_1:+56193871 | Msa0030150:CDS |
| TAGTGGTAAAATATCAAATA+CGG | 0.485896 | 1_1:-56196219 | None:intergenic |
| GGAGGATCACGGGCTGGTCA+GGG | 0.487190 | 1_1:-56193590 | None:intergenic |
| AACTCGTGGCTGATGATGCC+TGG | 0.490237 | 1_1:+56194946 | Msa0030150:CDS |
| GTTCTTGTCACTGGTGCTGC+AGG | 0.494198 | 1_1:+56192846 | Msa0030150:CDS |
| GGCGAATGGCAAATAGTTCA+AGG | 0.495465 | 1_1:+56195404 | Msa0030150:CDS |
| TTCCTTCAAGATCAAGGCAT+TGG | 0.495936 | 1_1:-56194718 | None:intergenic |
| TAGTAGTAGCTTTGTATATG+TGG | 0.498784 | 1_1:+56192529 | None:intergenic |
| TGCTACAACTGATGTGGTTG+AGG | 0.500221 | 1_1:+56193837 | Msa0030150:CDS |
| AGGGCCGAGCATCACTCCCC+TGG | 0.504498 | 1_1:-56193571 | None:intergenic |
| TTCATGAGTAGGAGTAGCAT+TGG | 0.507726 | 1_1:+56192681 | Msa0030150:five_prime_UTR |
| GGTTCTCGTTGTTGCCAACC+CGG | 0.510041 | 1_1:+56194689 | Msa0030150:intron |
| CCTTGTGTATTTGTCAATGG+AGG | 0.510190 | 1_1:+56195831 | Msa0030150:three_prime_UTR |
| AGAAGAGCTTTCTGAGGAGA+AGG | 0.511032 | 1_1:+56195771 | Msa0030150:CDS |
| TCAAGGCATTGGTGTTTGCC+GGG | 0.513479 | 1_1:-56194707 | None:intergenic |
| AGCGAATTCCTTCAAGATCA+AGG | 0.519920 | 1_1:-56194724 | None:intergenic |
| TCAGGGAACCTGGGTATCGA+TGG | 0.524300 | 1_1:+56195310 | Msa0030150:intron |
| GGTGGATTCCCTAGAAAAGA+AGG | 0.528773 | 1_1:+56193892 | Msa0030150:CDS |
| CGGTGTTAAAATGGAGTTGG+TGG | 0.529018 | 1_1:+56193650 | Msa0030150:CDS |
| GTTTCACGCCTTTCATGAGT+AGG | 0.532258 | 1_1:+56192670 | Msa0030150:five_prime_UTR |
| TCAAGCATGTGGAGGATCAC+GGG | 0.532929 | 1_1:-56193600 | None:intergenic |
| CGCCATTGCGAGTTGTGACA+GGG | 0.533982 | 1_1:-56195385 | None:intergenic |
| AATTGAGAATTGACAAACAA+TGG | 0.536893 | 1_1:-56195856 | None:intergenic |
| ATTCCCTAGAAAAGAAGGTA+TGG | 0.539427 | 1_1:+56193897 | Msa0030150:CDS |
| TCGATGGGAGTTTATTCTGA+TGG | 0.539461 | 1_1:+56195326 | Msa0030150:CDS |
| GTCAAGCATGTGGAGGATCA+CGG | 0.540541 | 1_1:-56193601 | None:intergenic |
| GGAGCATAACTTAGTTGGTA+AGG | 0.543782 | 1_1:-56196198 | None:intergenic |
| ATATTCTATCTTGCTTGGCA+TGG | 0.544371 | 1_1:+56192582 | Msa0030150:five_prime_UTR |
| TAGCTTTGTATATGTGGATG+AGG | 0.544967 | 1_1:+56192535 | None:intergenic |
| CAGTTGCGTGGTTGACATCA+GGG | 0.549966 | 1_1:-56194890 | None:intergenic |
| AACTCAAACCTTTAAGAAGA+GGG | 0.552886 | 1_1:-56193683 | None:intergenic |
| TCACTCCCCTGGCAATCATA+GGG | 0.553376 | 1_1:-56193560 | None:intergenic |
| TTGGACCATAACAGGGCTCT+GGG | 0.556375 | 1_1:+56194786 | Msa0030150:CDS |
| TGCAGCACCCCGTTGTTGGA+CGG | 0.557691 | 1_1:-56195106 | None:intergenic |
| GGAGATTGCTGATAAATAAG+TGG | 0.560772 | 1_1:-56192607 | None:intergenic |
| GGATCTTACAATGTACCCGC+TGG | 0.562224 | 1_1:+56195347 | Msa0030150:CDS |
| GACAGCAGAAGAGCTTTCTG+AGG | 0.563983 | 1_1:+56195765 | Msa0030150:CDS |
| TCACAACTCGCAATGGCGAA+TGG | 0.564475 | 1_1:+56195390 | Msa0030150:CDS |
| TTCCCTGTCACAACTCGCAA+TGG | 0.566100 | 1_1:+56195383 | Msa0030150:CDS |
| GTGGTCACAAGCAGCGCTCG+CGG | 0.568937 | 1_1:-56195166 | None:intergenic |
| ATTGCCAGGGGAGTGATGCT+CGG | 0.570606 | 1_1:+56193567 | Msa0030150:CDS |
| CATCATCAGCCACGAGTTCA+CGG | 0.570980 | 1_1:-56194941 | None:intergenic |
| AAACTCAAACCTTTAAGAAG+AGG | 0.571371 | 1_1:-56193684 | None:intergenic |
| TCTTGTCCCTATGATTGCCA+GGG | 0.574263 | 1_1:+56193554 | Msa0030150:CDS |
| GCATGTGGAGGATCACGGGC+TGG | 0.580601 | 1_1:-56193596 | None:intergenic |
| TCAGTGATTCGGCTGCTGGT+GGG | 0.585206 | 1_1:-56193626 | None:intergenic |
| GATGTGGTTGAGGGATGCAC+TGG | 0.588132 | 1_1:+56193847 | Msa0030150:CDS |
| CAGGGAACCTGGGTATCGAT+GGG | 0.588520 | 1_1:+56195311 | Msa0030150:intron |
| AATGAATAGATTAGTCCAGC+GGG | 0.591914 | 1_1:-56195362 | None:intergenic |
| GCTACAACTGATGTGGTTGA+GGG | 0.594490 | 1_1:+56193838 | Msa0030150:CDS |
| GACATTACAATATGAGAGGA+CGG | 0.595822 | 1_1:-56196176 | None:intergenic |
| GACAAGATTGGACCATAACA+GGG | 0.599626 | 1_1:+56194779 | Msa0030150:CDS |
| ATGCTACTCCTACTCATGAA+AGG | 0.602446 | 1_1:-56192678 | None:intergenic |
| ATTGAGAAACTCTTGATGGA+TGG | 0.603828 | 1_1:+56195901 | Msa0030150:three_prime_UTR |
| ATAAACTCCCATCGATACCC+AGG | 0.604419 | 1_1:-56195318 | None:intergenic |
| CTGGTGGGATGTCAAGCATG+TGG | 0.608538 | 1_1:-56193611 | None:intergenic |
| CAGGGTACTGACTTGATGAA+TGG | 0.610269 | 1_1:-56194872 | None:intergenic |
| CTAGAACCCAATCTCTAATG+TGG | 0.612432 | 1_1:-56195185 | None:intergenic |
| TCATAGCTACCGTCCAACAA+CGG | 0.613333 | 1_1:+56195097 | Msa0030150:CDS |
| TGTTGTTGCTACAACTGATG+TGG | 0.615089 | 1_1:+56193831 | Msa0030150:CDS |
| TCAGCCACGAGTTCACGGAC+AGG | 0.623183 | 1_1:-56194936 | None:intergenic |
| ACATGCTGCTGCAAACTGCA+AGG | 0.624025 | 1_1:+56193984 | Msa0030150:CDS |
| GCAATATCATCAGGGAACCT+GGG | 0.624982 | 1_1:+56195301 | Msa0030150:intron |
| AATAATAGAGGAACCGAAAG+CGG | 0.626618 | 1_1:+56192643 | Msa0030150:five_prime_UTR |
| ACTCCTTTAAGTGAATAAGT+GGG | 0.630424 | 1_1:+56196135 | Msa0030150:three_prime_UTR |
| GAACGGTGTTAAAATGGAGT+TGG | 0.636523 | 1_1:+56193647 | Msa0030150:CDS |
| AAAGCCTGTCCGTGAACTCG+TGG | 0.642217 | 1_1:+56194932 | Msa0030150:CDS |
| TTGGGTTCTAGGAACTCCTG+AGG | 0.644314 | 1_1:+56195197 | Msa0030150:CDS |
| GGAAACAAGCTGTCTAAGAG+AGG | 0.644922 | 1_1:-56195810 | None:intergenic |
| CCTCCATTGACAAATACACA+AGG | 0.650568 | 1_1:-56195831 | None:intergenic |
| CTTGTCCCTATGATTGCCAG+GGG | 0.651791 | 1_1:+56193555 | Msa0030150:CDS |
| CCAGCAGCCGAATCACTGAA+CGG | 0.657663 | 1_1:+56193630 | Msa0030150:CDS |
| TAAGGACATTACAATATGAG+AGG | 0.657850 | 1_1:-56196180 | None:intergenic |
| CTAGAAAAGAAGGTATGGAG+AGG | 0.663254 | 1_1:+56193902 | Msa0030150:CDS |
| GAATGAATAGATTAGTCCAG+CGG | 0.674762 | 1_1:-56195363 | None:intergenic |
| GTGGGATGTCAAGCATGTGG+AGG | 0.682561 | 1_1:-56193608 | None:intergenic |
| CAGTGACAAGAACACGAACA+GGG | 0.694789 | 1_1:-56192836 | None:intergenic |
| ATAGCTACCGTCCAACAACG+GGG | 0.807747 | 1_1:+56195099 | Msa0030150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTGTTTTTTTTTTTTTT+TGG | + | chr1_1:56196086-56196105 | Msa0030150:three_prime_UTR | 10.0% |
| !! | AGAAAATTGCATAATTATAA+GGG | - | chr1_1:56193174-56193193 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGACATAAAATG+CGG | - | chr1_1:56194070-56194089 | None:intergenic | 15.0% |
| !! | ATGTGAAAAATGTTATAATT+TGG | + | chr1_1:56194844-56194863 | Msa0030150:CDS | 15.0% |
| !! | TGTGAAAAATGTTATAATTT+GGG | + | chr1_1:56194845-56194864 | Msa0030150:CDS | 15.0% |
| !! | TTCAAATTCTTTATATTGAA+TGG | + | chr1_1:56195246-56195265 | Msa0030150:intron | 15.0% |
| !! | CTTAATTTACAAATAAAAGA+CGG | - | chr1_1:56195623-56195642 | None:intergenic | 15.0% |
| !!! | TTGTTTTATATAGCAAATAA+AGG | + | chr1_1:56195649-56195668 | Msa0030150:intron | 15.0% |
| !! | AACATTTATCAATAAAATAG+TGG | - | chr1_1:56196239-56196258 | None:intergenic | 15.0% |
| !! | ACTATTTGTCTATTTATTCA+CGG | - | chr1_1:56192712-56192731 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTGTTTTGTTTA+AGG | + | chr1_1:56192907-56192926 | Msa0030150:intron | 20.0% |
| !! | TTTAGAAATAGAACTATGTT+TGG | + | chr1_1:56193002-56193021 | Msa0030150:intron | 20.0% |
| !! | CAGAAAATTGCATAATTATA+AGG | - | chr1_1:56193175-56193194 | None:intergenic | 20.0% |
| !! | TTTCTATAAACTCTCAAATA+GGG | - | chr1_1:56193224-56193243 | None:intergenic | 20.0% |
| !! | ATTTCTATAAACTCTCAAAT+AGG | - | chr1_1:56193225-56193244 | None:intergenic | 20.0% |
| !!! | GTAAACATTTTAACCATATT+TGG | - | chr1_1:56193440-56193459 | None:intergenic | 20.0% |
| !! | ATTTCAACATAAAATCTTTG+AGG | + | chr1_1:56193474-56193493 | Msa0030150:intron | 20.0% |
| !!! | AAAAATGTTTTGCCAATTTT+AGG | + | chr1_1:56193516-56193535 | Msa0030150:intron | 20.0% |
| !! | TTGTGAAAATTATTTGTTTC+AGG | + | chr1_1:56193808-56193827 | Msa0030150:intron | 20.0% |
| !! | AAAAAATATGTTCCATTCTA+TGG | + | chr1_1:56194083-56194102 | Msa0030150:intron | 20.0% |
| !! | ACAACTTAATTAAATTCGTA+TGG | - | chr1_1:56194372-56194391 | None:intergenic | 20.0% |
| !!! | TACGAATTTAATTAAGTTGT+TGG | + | chr1_1:56194372-56194391 | Msa0030150:intron | 20.0% |
| !!! | TAGTCCTTTTTACATATTTT+TGG | + | chr1_1:56194606-56194625 | Msa0030150:intron | 20.0% |
| !! | GTTTCCAAAAATATGTAAAA+AGG | - | chr1_1:56194613-56194632 | None:intergenic | 20.0% |
| !! | GTGAAAAATGTTATAATTTG+GGG | + | chr1_1:56194846-56194865 | Msa0030150:CDS | 20.0% |
| !!! | AGATTTTGATAAATTATTGC+TGG | + | chr1_1:56195429-56195448 | Msa0030150:intron | 20.0% |
| !!! | CGTCTTTTATTTGTAAATTA+AGG | + | chr1_1:56195621-56195640 | Msa0030150:intron | 20.0% |
| !!! | TCAATTCTCAATTTTGAATA+AGG | + | chr1_1:56195866-56195885 | Msa0030150:three_prime_UTR | 20.0% |
| !! | TAGTGGTAAAATATCAAATA+CGG | - | chr1_1:56196222-56196241 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTGGATGAAAGAA+AGG | - | chr1_1:56192804-56192823 | None:intergenic | 25.0% |
| ! | CTTTCATCCAAAAAAAACAA+TGG | + | chr1_1:56192806-56192825 | Msa0030150:exon | 25.0% |
| !!! | TCTTTAGCCATTGTTTTTTT+TGG | - | chr1_1:56192816-56192835 | None:intergenic | 25.0% |
| ! | AGGTAACCATAATAAATTCT+GGG | + | chr1_1:56192866-56192885 | Msa0030150:intron | 25.0% |
| ! | TTTATTTCCATAATCTCTCT+AGG | + | chr1_1:56193276-56193295 | Msa0030150:intron | 25.0% |
| ! | TGAAGTTGTTTATCCAAATA+TGG | + | chr1_1:56193424-56193443 | Msa0030150:intron | 25.0% |
| ! | TATCCAATTTGTCCTAAAAT+TGG | - | chr1_1:56193531-56193550 | None:intergenic | 25.0% |
| !! | TAAATGTTACTTGAACTTCT+TGG | + | chr1_1:56193717-56193736 | Msa0030150:intron | 25.0% |
| ! | AAATGCTTTGCAAGATTAAA+AGG | + | chr1_1:56193783-56193802 | Msa0030150:intron | 25.0% |
| ! | TGAAAGAGATACATGAAAAA+GGG | - | chr1_1:56194119-56194138 | None:intergenic | 25.0% |
| ! | AACTAAAATAAATTCAGTGC+AGG | - | chr1_1:56194471-56194490 | None:intergenic | 25.0% |
| !!! | ATGTGTATTTTGGTCATATA+TGG | + | chr1_1:56194525-56194544 | Msa0030150:intron | 25.0% |
| ! | ACAGAGTTTAAAGAAATGTA+AGG | - | chr1_1:56194658-56194677 | None:intergenic | 25.0% |
| !! | AAACAAGAAATGTTTTTCTC+AGG | - | chr1_1:56194759-56194778 | None:intergenic | 25.0% |
| ! | ATACTTCAGTAAATGCAAAA+TGG | - | chr1_1:56195041-56195060 | None:intergenic | 25.0% |
| !! | TTTTCATTGCAATATCATCA+GGG | + | chr1_1:56195293-56195312 | Msa0030150:intron | 25.0% |
| !!! | ATCTGTCTAATTTTTTAACC+AGG | + | chr1_1:56195703-56195722 | Msa0030150:intron | 25.0% |
| !! | TATCAATTGATGAGTTTTCA+AGG | + | chr1_1:56195728-56195747 | Msa0030150:CDS | 25.0% |
| !!! | TGAGTTTTCAAGGAAAAAAT+TGG | + | chr1_1:56195738-56195757 | Msa0030150:CDS | 25.0% |
| ! | AATTGAGAATTGACAAACAA+TGG | - | chr1_1:56195859-56195878 | None:intergenic | 25.0% |
| ! | TACAATTACAATACAAGTGA+TGG | - | chr1_1:56195945-56195964 | None:intergenic | 25.0% |
| ! | TTTGAAAAGTTTATGTCTTC+TGG | + | chr1_1:56196029-56196048 | Msa0030150:three_prime_UTR | 25.0% |
| AGAGAATATTCTATCTTGCT+TGG | + | chr1_1:56192577-56192596 | Msa0030150:five_prime_UTR | 30.0% | |
| CAGGTAACCATAATAAATTC+TGG | + | chr1_1:56192865-56192884 | Msa0030150:intron | 30.0% | |
| GAGAAACCCAGAATTTATTA+TGG | - | chr1_1:56192875-56192894 | None:intergenic | 30.0% | |
| CAATCAAGAAACATGATACA+AGG | - | chr1_1:56192976-56192995 | None:intergenic | 30.0% | |
| CTTGTATCATGTTTCTTGAT+TGG | + | chr1_1:56192974-56192993 | Msa0030150:intron | 30.0% | |
| TAGGGAAAATACTACAATTG+AGG | - | chr1_1:56193206-56193225 | None:intergenic | 30.0% | |
| AAGTTATCCTAGAGAGATTA+TGG | - | chr1_1:56193286-56193305 | None:intergenic | 30.0% | |
| !!! | TTGCCAATTTTAGGACAAAT+TGG | + | chr1_1:56193525-56193544 | Msa0030150:intron | 30.0% |
| ! | AACTCAAACCTTTAAGAAGA+GGG | - | chr1_1:56193686-56193705 | None:intergenic | 30.0% |
| ! | AAACTCAAACCTTTAAGAAG+AGG | - | chr1_1:56193687-56193706 | None:intergenic | 30.0% |
| AAAGAGATACATGAAAAAGG+GGG | - | chr1_1:56194117-56194136 | None:intergenic | 30.0% | |
| GAAAGAGATACATGAAAAAG+GGG | - | chr1_1:56194118-56194137 | None:intergenic | 30.0% | |
| CTGAAAGAGATACATGAAAA+AGG | - | chr1_1:56194120-56194139 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr1_1:56194144-56194163 | None:intergenic | 30.0% | |
| ! | TTGTCATAGTTTTTGTGTGA+TGG | + | chr1_1:56194420-56194439 | Msa0030150:intron | 30.0% |
| ! | TTAGTTTAGTGCTGAAAAAG+TGG | + | chr1_1:56194485-56194504 | Msa0030150:intron | 30.0% |
| ! | AGAAATGTTTTTCTCAGGAA+TGG | - | chr1_1:56194754-56194773 | None:intergenic | 30.0% |
| ! | CATTTCTTGTTTGACAAGAT+TGG | + | chr1_1:56194767-56194786 | Msa0030150:CDS | 30.0% |
| ! | TGATGTAATTTTCATCGTCA+AGG | + | chr1_1:56195061-56195080 | Msa0030150:intron | 30.0% |
| ! | TTTTCATCGTCAAGGTTAAA+TGG | + | chr1_1:56195069-56195088 | Msa0030150:intron | 30.0% |
| ATATTGAATGGCTTCAACTA+AGG | + | chr1_1:56195258-56195277 | Msa0030150:intron | 30.0% | |
| ! | CTTTTCATTGCAATATCATC+AGG | + | chr1_1:56195292-56195311 | Msa0030150:intron | 30.0% |
| TTTCCTTGTGTATTTGTCAA+TGG | + | chr1_1:56195828-56195847 | Msa0030150:three_prime_UTR | 30.0% | |
| AGATATTGAGAAACTCTTGA+TGG | + | chr1_1:56195897-56195916 | Msa0030150:three_prime_UTR | 30.0% | |
| ! | AGACATAAACTTTTCAAACG+CGG | - | chr1_1:56196027-56196046 | None:intergenic | 30.0% |
| ACTCCTTTAAGTGAATAAGT+GGG | + | chr1_1:56196135-56196154 | Msa0030150:three_prime_UTR | 30.0% | |
| TTTCCCACTTATTCACTTAA+AGG | - | chr1_1:56196141-56196160 | None:intergenic | 30.0% | |
| AAGTGAATAAGTGGGAAATT+CGG | + | chr1_1:56196143-56196162 | Msa0030150:three_prime_UTR | 30.0% | |
| TAAGGACATTACAATATGAG+AGG | - | chr1_1:56196183-56196202 | None:intergenic | 30.0% | |
| ATATTCTATCTTGCTTGGCA+TGG | + | chr1_1:56192582-56192601 | Msa0030150:five_prime_UTR | 35.0% | |
| GGAGATTGCTGATAAATAAG+TGG | - | chr1_1:56192610-56192629 | None:intergenic | 35.0% | |
| AATAATAGAGGAACCGAAAG+CGG | + | chr1_1:56192643-56192662 | Msa0030150:five_prime_UTR | 35.0% | |
| ATTAACTGCTTGCAACTACT+AGG | - | chr1_1:56193100-56193119 | None:intergenic | 35.0% | |
| TTTAACACCGTTCAGTGATT+CGG | - | chr1_1:56193640-56193659 | None:intergenic | 35.0% | |
| ! | ATCACTGAACGGTGTTAAAA+TGG | + | chr1_1:56193641-56193660 | Msa0030150:CDS | 35.0% |
| CCAACTTCAAACCAGAAATA+TGG | - | chr1_1:56193747-56193766 | None:intergenic | 35.0% | |
| !! | CCATATTTCTGGTTTGAAGT+TGG | + | chr1_1:56193744-56193763 | Msa0030150:intron | 35.0% |
| ! | TGGAGTCAATATTGCTGTTA+TGG | + | chr1_1:56193867-56193886 | Msa0030150:CDS | 35.0% |
| ! | GTCAATATTGCTGTTATGGT+TGG | + | chr1_1:56193871-56193890 | Msa0030150:CDS | 35.0% |
| ! | AATATTGCTGTTATGGTTGG+TGG | + | chr1_1:56193874-56193893 | Msa0030150:CDS | 35.0% |
| ATTCCCTAGAAAAGAAGGTA+TGG | + | chr1_1:56193897-56193916 | Msa0030150:CDS | 35.0% | |
| ! | TCTCCATACCTTCTTTTCTA+GGG | - | chr1_1:56193903-56193922 | None:intergenic | 35.0% |
| GCTTGAGCATTCAGAATTAA+AGG | - | chr1_1:56194014-56194033 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTAC+AGG | + | chr1_1:56194253-56194272 | Msa0030150:intron | 35.0% | |
| ATTCAGTGCAGGTAATGTAT+TGG | - | chr1_1:56194460-56194479 | None:intergenic | 35.0% | |
| !! | TGGTTGGTTCATGTGTATTT+TGG | + | chr1_1:56194515-56194534 | Msa0030150:intron | 35.0% |
| AGAAACAGATTTCACCAGAA+TGG | - | chr1_1:56194567-56194586 | None:intergenic | 35.0% | |
| ! | ATGTTTTTCTCAGGAATGGA+TGG | - | chr1_1:56194750-56194769 | None:intergenic | 35.0% |
| !! | AAGCAATTTTAACAGTTGCG+TGG | - | chr1_1:56194905-56194924 | None:intergenic | 35.0% |
| TATTTGTCCATCAACATACC+AGG | - | chr1_1:56194967-56194986 | None:intergenic | 35.0% | |
| TTGTGACCACATTAGAGATT+GGG | + | chr1_1:56195179-56195198 | Msa0030150:CDS | 35.0% | |
| ! | AATGAATAGATTAGTCCAGC+GGG | - | chr1_1:56195365-56195384 | None:intergenic | 35.0% |
| ! | GAATGAATAGATTAGTCCAG+CGG | - | chr1_1:56195366-56195385 | None:intergenic | 35.0% |
| ! | AACTCATCAATTGATAGTCC+TGG | - | chr1_1:56195724-56195743 | None:intergenic | 35.0% |
| ATTGAGAAACTCTTGATGGA+TGG | + | chr1_1:56195901-56195920 | Msa0030150:three_prime_UTR | 35.0% | |
| ! | CAAGTGATGGTTTGCATAAA+AGG | - | chr1_1:56195932-56195951 | None:intergenic | 35.0% |
| !! | TTTTTGGCGAATTAACCTGT+TGG | + | chr1_1:56196102-56196121 | Msa0030150:three_prime_UTR | 35.0% |
| CACTCCTTTAAGTGAATAAG+TGG | + | chr1_1:56196134-56196153 | Msa0030150:three_prime_UTR | 35.0% | |
| GACATTACAATATGAGAGGA+CGG | - | chr1_1:56196179-56196198 | None:intergenic | 35.0% | |
| AATACGGAGCATAACTTAGT+TGG | - | chr1_1:56196206-56196225 | None:intergenic | 35.0% | |
| ATGCTACTCCTACTCATGAA+AGG | - | chr1_1:56192681-56192700 | None:intergenic | 40.0% | |
| TTCATGAGTAGGAGTAGCAT+TGG | + | chr1_1:56192681-56192700 | Msa0030150:five_prime_UTR | 40.0% | |
| ! | GAACGGTGTTAAAATGGAGT+TGG | + | chr1_1:56193647-56193666 | Msa0030150:CDS | 40.0% |
| TTCTTGGACAGCCATATTTC+TGG | + | chr1_1:56193733-56193752 | Msa0030150:intron | 40.0% | |
| ! | GGTTTGAAGTTGGATTGTGT+TGG | + | chr1_1:56193754-56193773 | Msa0030150:intron | 40.0% |
| TGTTGTTGCTACAACTGATG+TGG | + | chr1_1:56193831-56193850 | Msa0030150:CDS | 40.0% | |
| ! | CTCTCCATACCTTCTTTTCT+AGG | - | chr1_1:56193904-56193923 | None:intergenic | 40.0% |
| ! | CTAGAAAAGAAGGTATGGAG+AGG | + | chr1_1:56193902-56193921 | Msa0030150:CDS | 40.0% |
| TTTCTCAAGAGCAGAAGCTT+GGG | - | chr1_1:56193965-56193984 | None:intergenic | 40.0% | |
| GTATCTCTTTCAGACCTGTT+TGG | + | chr1_1:56194127-56194146 | Msa0030150:intron | 40.0% | |
| AAGCTATCCTGTAGAGCTTA+TGG | - | chr1_1:56194263-56194282 | None:intergenic | 40.0% | |
| AAAAAGTGGTTCCATCTGGT+TGG | + | chr1_1:56194499-56194518 | Msa0030150:intron | 40.0% | |
| ATACACATGAACCAACCAGA+TGG | - | chr1_1:56194513-56194532 | None:intergenic | 40.0% | |
| AAGTCCTTGTGATTCCATTC+TGG | + | chr1_1:56194550-56194569 | Msa0030150:intron | 40.0% | |
| TTCACCAGAATGGAATCACA+AGG | - | chr1_1:56194557-56194576 | None:intergenic | 40.0% | |
| TAAACTCTGTATCACCATGC+AGG | + | chr1_1:56194668-56194687 | Msa0030150:intron | 40.0% | |
| TTCCTTCAAGATCAAGGCAT+TGG | - | chr1_1:56194721-56194740 | None:intergenic | 40.0% | |
| AGCGAATTCCTTCAAGATCA+AGG | - | chr1_1:56194727-56194746 | None:intergenic | 40.0% | |
| TGACAAGATTGGACCATAAC+AGG | + | chr1_1:56194778-56194797 | Msa0030150:CDS | 40.0% | |
| GACAAGATTGGACCATAACA+GGG | + | chr1_1:56194779-56194798 | Msa0030150:CDS | 40.0% | |
| CTTGTGACCACATTAGAGAT+TGG | + | chr1_1:56195178-56195197 | Msa0030150:CDS | 40.0% | |
| CTAGAACCCAATCTCTAATG+TGG | - | chr1_1:56195188-56195207 | None:intergenic | 40.0% | |
| CACATTAGAGATTGGGTTCT+AGG | + | chr1_1:56195186-56195205 | Msa0030150:CDS | 40.0% | |
| TCGATGGGAGTTTATTCTGA+TGG | + | chr1_1:56195326-56195345 | Msa0030150:CDS | 40.0% | |
| !! | CTCTTTGATTGATAGTGCGT+TGG | - | chr1_1:56195526-56195545 | None:intergenic | 40.0% |
| CCTCCATTGACAAATACACA+AGG | - | chr1_1:56195834-56195853 | None:intergenic | 40.0% | |
| CCTTGTGTATTTGTCAATGG+AGG | + | chr1_1:56195831-56195850 | Msa0030150:three_prime_UTR | 40.0% | |
| ! | GAGCATATGTCATTTGAGTC+AGG | + | chr1_1:56195993-56196012 | Msa0030150:three_prime_UTR | 40.0% |
| GGAGTGAATTTATAGCCAAC+AGG | - | chr1_1:56196120-56196139 | None:intergenic | 40.0% | |
| ! | GGAGCATAACTTAGTTGGTA+AGG | - | chr1_1:56196201-56196220 | None:intergenic | 40.0% |
| GTTTCACGCCTTTCATGAGT+AGG | + | chr1_1:56192670-56192689 | Msa0030150:five_prime_UTR | 45.0% | |
| CAGTGACAAGAACACGAACA+GGG | - | chr1_1:56192839-56192858 | None:intergenic | 45.0% | |
| TCTTGTCCCTATGATTGCCA+GGG | + | chr1_1:56193554-56193573 | Msa0030150:CDS | 45.0% | |
| ! | CGGTGTTAAAATGGAGTTGG+TGG | + | chr1_1:56193650-56193669 | Msa0030150:CDS | 45.0% |
| GCTGCATTCCCTCTTCTTAA+AGG | + | chr1_1:56193675-56193694 | Msa0030150:CDS | 45.0% | |
| TGCTACAACTGATGTGGTTG+AGG | + | chr1_1:56193837-56193856 | Msa0030150:CDS | 45.0% | |
| GCTACAACTGATGTGGTTGA+GGG | + | chr1_1:56193838-56193857 | Msa0030150:CDS | 45.0% | |
| ! | GGTGGATTCCCTAGAAAAGA+AGG | + | chr1_1:56193892-56193911 | Msa0030150:CDS | 45.0% |
| GTTTCTCAAGAGCAGAAGCT+TGG | - | chr1_1:56193966-56193985 | None:intergenic | 45.0% | |
| ATACATGAAAAAGGGGGAGG+AGG | - | chr1_1:56194111-56194130 | None:intergenic | 45.0% | |
| GAGATACATGAAAAAGGGGG+AGG | - | chr1_1:56194114-56194133 | None:intergenic | 45.0% | |
| GTCTCACAAGTGCTTGCTTA+TGG | - | chr1_1:56194179-56194198 | None:intergenic | 45.0% | |
| AAGCACTTGTGAGACTGCTT+GGG | + | chr1_1:56194184-56194203 | Msa0030150:intron | 45.0% | |
| GCTGAAAAAGTGGTTCCATC+TGG | + | chr1_1:56194495-56194514 | Msa0030150:intron | 45.0% | |
| !! | ATCAAGGCATTGGTGTTTGC+CGG | - | chr1_1:56194711-56194730 | None:intergenic | 45.0% |
| CACCAATGCCTTGATCTTGA+AGG | + | chr1_1:56194716-56194735 | Msa0030150:CDS | 45.0% | |
| !! | CAGGGTACTGACTTGATGAA+TGG | - | chr1_1:56194875-56194894 | None:intergenic | 45.0% |
| GATGATGCCTGGTATGTTGA+TGG | + | chr1_1:56194957-56194976 | Msa0030150:intron | 45.0% | |
| TCATAGCTACCGTCCAACAA+CGG | + | chr1_1:56195097-56195116 | Msa0030150:CDS | 45.0% | |
| AGCAAGACATAACCAACCTC+AGG | - | chr1_1:56195216-56195235 | None:intergenic | 45.0% | |
| TGCAATATCATCAGGGAACC+TGG | + | chr1_1:56195300-56195319 | Msa0030150:intron | 45.0% | |
| GCAATATCATCAGGGAACCT+GGG | + | chr1_1:56195301-56195320 | Msa0030150:intron | 45.0% | |
| ATAAACTCCCATCGATACCC+AGG | - | chr1_1:56195321-56195340 | None:intergenic | 45.0% | |
| GGCGAATGGCAAATAGTTCA+AGG | + | chr1_1:56195404-56195423 | Msa0030150:CDS | 45.0% | |
| ! | AGAAGAGCTTTCTGAGGAGA+AGG | + | chr1_1:56195771-56195790 | Msa0030150:CDS | 45.0% |
| GGAAACAAGCTGTCTAAGAG+AGG | - | chr1_1:56195813-56195832 | None:intergenic | 45.0% | |
| !! | CTATTATTATTATTATTTAA+AGG | - | chr1_1:56192631-56192650 | None:intergenic | 5.0% |
| !! | TTAAATAATAATAATAATAG+AGG | + | chr1_1:56192631-56192650 | Msa0030150:five_prime_UTR | 5.0% |
| CCAGTGACAAGAACACGAAC+AGG | - | chr1_1:56192840-56192859 | None:intergenic | 50.0% | |
| CCTGTTCGTGTTCTTGTCAC+TGG | + | chr1_1:56192837-56192856 | Msa0030150:CDS | 50.0% | |
| CTCTTGTCCCTATGATTGCC+AGG | + | chr1_1:56193553-56193572 | Msa0030150:CDS | 50.0% | |
| CTTGTCCCTATGATTGCCAG+GGG | + | chr1_1:56193555-56193574 | Msa0030150:CDS | 50.0% | |
| TCACTCCCCTGGCAATCATA+GGG | - | chr1_1:56193563-56193582 | None:intergenic | 50.0% | |
| ATCACTCCCCTGGCAATCAT+AGG | - | chr1_1:56193564-56193583 | None:intergenic | 50.0% | |
| TCAAGCATGTGGAGGATCAC+GGG | - | chr1_1:56193603-56193622 | None:intergenic | 50.0% | |
| GTCAAGCATGTGGAGGATCA+CGG | - | chr1_1:56193604-56193623 | None:intergenic | 50.0% | |
| ACATGCTGCTGCAAACTGCA+AGG | + | chr1_1:56193984-56194003 | Msa0030150:CDS | 50.0% | |
| CAAGCACTTGTGAGACTGCT+TGG | + | chr1_1:56194183-56194202 | Msa0030150:intron | 50.0% | |
| !! | TCAAGGCATTGGTGTTTGCC+GGG | - | chr1_1:56194710-56194729 | None:intergenic | 50.0% |
| ATTGGACCATAACAGGGCTC+TGG | + | chr1_1:56194785-56194804 | Msa0030150:CDS | 50.0% | |
| TTGGACCATAACAGGGCTCT+GGG | + | chr1_1:56194786-56194805 | Msa0030150:CDS | 50.0% | |
| TTTGACCCAGAGCCCTGTTA+TGG | - | chr1_1:56194794-56194813 | None:intergenic | 50.0% | |
| CAGTTGCGTGGTTGACATCA+GGG | - | chr1_1:56194893-56194912 | None:intergenic | 50.0% | |
| ACAGTTGCGTGGTTGACATC+AGG | - | chr1_1:56194894-56194913 | None:intergenic | 50.0% | |
| CATCATCAGCCACGAGTTCA+CGG | - | chr1_1:56194944-56194963 | None:intergenic | 50.0% | |
| CATAGCTACCGTCCAACAAC+GGG | + | chr1_1:56195098-56195117 | Msa0030150:CDS | 50.0% | |
| ATAGCTACCGTCCAACAACG+GGG | + | chr1_1:56195099-56195118 | Msa0030150:CDS | 50.0% | |
| !! | TTGGGTTCTAGGAACTCCTG+AGG | + | chr1_1:56195197-56195216 | Msa0030150:CDS | 50.0% |
| !! | GTTCTAGGAACTCCTGAGGT+TGG | + | chr1_1:56195201-56195220 | Msa0030150:intron | 50.0% |
| GGATCTTACAATGTACCCGC+TGG | + | chr1_1:56195347-56195366 | Msa0030150:CDS | 50.0% | |
| TTCCCTGTCACAACTCGCAA+TGG | + | chr1_1:56195383-56195402 | Msa0030150:CDS | 50.0% | |
| TCACAACTCGCAATGGCGAA+TGG | + | chr1_1:56195390-56195409 | Msa0030150:CDS | 50.0% | |
| GACAGCAGAAGAGCTTTCTG+AGG | + | chr1_1:56195765-56195784 | Msa0030150:CDS | 50.0% | |
| ! | GCTTTCTGAGGAGAAGGCTT+TGG | + | chr1_1:56195777-56195796 | Msa0030150:CDS | 50.0% |
| GCGTGAAACGACACCGCTTT+CGG | - | chr1_1:56192659-56192678 | None:intergenic | 55.0% | |
| !! | GTTCTTGTCACTGGTGCTGC+AGG | + | chr1_1:56192846-56192865 | Msa0030150:CDS | 55.0% |
| ATTGCCAGGGGAGTGATGCT+CGG | + | chr1_1:56193567-56193586 | Msa0030150:CDS | 55.0% | |
| GTGGGATGTCAAGCATGTGG+AGG | - | chr1_1:56193611-56193630 | None:intergenic | 55.0% | |
| CTGGTGGGATGTCAAGCATG+TGG | - | chr1_1:56193614-56193633 | None:intergenic | 55.0% | |
| ! | TCAGTGATTCGGCTGCTGGT+GGG | - | chr1_1:56193629-56193648 | None:intergenic | 55.0% |
| ! | TTCAGTGATTCGGCTGCTGG+TGG | - | chr1_1:56193630-56193649 | None:intergenic | 55.0% |
| CCAGCAGCCGAATCACTGAA+CGG | + | chr1_1:56193630-56193649 | Msa0030150:CDS | 55.0% | |
| GATGTGGTTGAGGGATGCAC+TGG | + | chr1_1:56193847-56193866 | Msa0030150:CDS | 55.0% | |
| GGGGAGGAGGAACCATAGAA+TGG | - | chr1_1:56194098-56194117 | None:intergenic | 55.0% | |
| AGACTGCTTGGGAGAGCTCA+TGG | + | chr1_1:56194195-56194214 | Msa0030150:intron | 55.0% | |
| GGCAACAACGAGAACCTGCA+TGG | - | chr1_1:56194685-56194704 | None:intergenic | 55.0% | |
| GGTTCTCGTTGTTGCCAACC+CGG | + | chr1_1:56194689-56194708 | Msa0030150:intron | 55.0% | |
| AAAGCCTGTCCGTGAACTCG+TGG | + | chr1_1:56194932-56194951 | Msa0030150:CDS | 55.0% | |
| ! | AACTCGTGGCTGATGATGCC+TGG | + | chr1_1:56194946-56194965 | Msa0030150:CDS | 55.0% |
| TGATTGCAGCACCCCGTTGT+TGG | - | chr1_1:56195113-56195132 | None:intergenic | 55.0% | |
| !! | TCAGGGAACCTGGGTATCGA+TGG | + | chr1_1:56195310-56195329 | Msa0030150:intron | 55.0% |
| !! | CAGGGAACCTGGGTATCGAT+GGG | + | chr1_1:56195311-56195330 | Msa0030150:intron | 55.0% |
| CGCCATTGCGAGTTGTGACA+GGG | - | chr1_1:56195388-56195407 | None:intergenic | 55.0% | |
| TCGCCATTGCGAGTTGTGAC+AGG | - | chr1_1:56195389-56195408 | None:intergenic | 55.0% | |
| ! | CCGTTCAGTGATTCGGCTGC+TGG | - | chr1_1:56193633-56193652 | None:intergenic | 60.0% |
| !! | GGCATTGGTGTTTGCCGGGT+TGG | - | chr1_1:56194706-56194725 | None:intergenic | 60.0% |
| TCAGCCACGAGTTCACGGAC+AGG | - | chr1_1:56194939-56194958 | None:intergenic | 60.0% | |
| TGCAGCACCCCGTTGTTGGA+CGG | - | chr1_1:56195109-56195128 | None:intergenic | 60.0% | |
| !! | GGAGGATCACGGGCTGGTCA+GGG | - | chr1_1:56193593-56193612 | None:intergenic | 65.0% |
| !! | TGGAGGATCACGGGCTGGTC+AGG | - | chr1_1:56193594-56193613 | None:intergenic | 65.0% |
| GCATGTGGAGGATCACGGGC+TGG | - | chr1_1:56193599-56193618 | None:intergenic | 65.0% | |
| GTGGTCACAAGCAGCGCTCG+CGG | - | chr1_1:56195169-56195188 | None:intergenic | 65.0% | |
| AGGGCCGAGCATCACTCCCC+TGG | - | chr1_1:56193574-56193593 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 56192537 | 56196276 | 56192537 | ID=Msa0030150;Name=Msa0030150 |
| chr1_1 | mRNA | 56192537 | 56196276 | 56192537 | ID=Msa0030150-mRNA-1;Parent=Msa0030150;Name=Msa0030150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=288|1|1|1|1|1|7|457|332 |
| chr1_1 | exon | 56192537 | 56192867 | 56192537 | ID=Msa0030150-mRNA-1:exon:16779;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56193538 | 56193696 | 56193538 | ID=Msa0030150-mRNA-1:exon:16780;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56193830 | 56194005 | 56193830 | ID=Msa0030150-mRNA-1:exon:16781;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56194690 | 56194967 | 56194690 | ID=Msa0030150-mRNA-1:exon:16782;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56195083 | 56195218 | 56195083 | ID=Msa0030150-mRNA-1:exon:16783;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56195314 | 56195425 | 56195314 | ID=Msa0030150-mRNA-1:exon:16784;Parent=Msa0030150-mRNA-1 |
| chr1_1 | exon | 56195725 | 56196276 | 56195725 | ID=Msa0030150-mRNA-1:exon:16785;Parent=Msa0030150-mRNA-1 |
| chr1_1 | five_prime_UTR | 56192537 | 56192824 | 56192537 | ID=Msa0030150-mRNA-1:five_prime_utr;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56192825 | 56192867 | 56192825 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56193538 | 56193696 | 56193538 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56193830 | 56194005 | 56193830 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56194690 | 56194967 | 56194690 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56195083 | 56195218 | 56195083 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56195314 | 56195425 | 56195314 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | CDS | 56195725 | 56195819 | 56195725 | ID=Msa0030150-mRNA-1:cds;Parent=Msa0030150-mRNA-1 |
| chr1_1 | three_prime_UTR | 56195820 | 56196276 | 56195820 | ID=Msa0030150-mRNA-1:three_prime_utr;Parent=Msa0030150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
