AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124540 MtrunA17_Chr7g0264961 100.000 250 0 0 1 250 1 250 6.31e-175 481
Msa1124540 MtrunA17_Chr4g0030861 74.603 252 62 2 1 250 1 252 4.39e-121 345
Msa1124540 MtrunA17_Chr1g0212671 67.460 252 80 2 1 250 1 252 1.19e-114 328
Msa1124540 MtrunA17_Chr7g0222791 69.841 252 74 2 1 250 1 252 7.89e-110 317
Msa1124540 MtrunA17_Chr2g0331261 61.224 245 94 1 4 247 3 247 1.22e-95 280
Msa1124540 MtrunA17_Chr8g0340161 61.847 249 93 2 3 250 1 248 1.89e-94 277
Msa1124540 MtrunA17_Chr1g0188771 54.264 258 110 2 1 250 1 258 2.95e-94 277
Msa1124540 MtrunA17_Chr6g0478191 57.647 255 103 2 1 250 1 255 1.55e-91 270
Msa1124540 MtrunA17_Chr5g0399341 62.602 246 91 1 5 250 3 247 2.20e-90 267
Msa1124540 MtrunA17_Chr1g0146161 53.226 248 111 3 3 249 1 244 6.99e-83 248
Msa1124540 MtrunA17_Chr1g0146171 52.869 244 110 3 3 245 1 240 3.57e-79 238
Msa1124540 MtrunA17_Chr4g0020781 42.079 202 114 3 46 245 4 204 9.81e-43 144
Msa1124540 MtrunA17_Chr2g0326621 36.653 251 141 6 12 245 31 280 9.65e-40 139
Msa1124540 MtrunA17_Chr1g0199731 36.515 241 136 5 12 236 30 269 1.41e-36 130
Msa1124540 MtrunA17_Chr4g0006001 35.965 228 131 5 21 236 56 280 7.87e-36 129
Msa1124540 MtrunA17_Chr7g0264111 36.087 230 130 5 21 234 39 267 7.18e-35 126
Msa1124540 MtrunA17_Chr4g0029071 34.800 250 146 6 12 245 30 278 1.00e-34 125
Msa1124540 MtrunA17_Chr3g0145671 36.986 219 119 6 21 225 37 250 7.45e-34 123
Msa1124540 MtrunA17_Chr3g0113211 34.310 239 141 5 11 236 45 280 7.51e-33 120
Msa1124540 MtrunA17_Chr5g0397391 34.016 244 137 6 10 236 41 277 8.70e-33 120
Msa1124540 MtrunA17_Chr8g0386961 33.333 243 138 6 11 236 42 277 1.17e-32 120
Msa1124540 MtrunA17_Chr5g0426131 33.735 249 149 4 4 248 23 259 3.76e-32 118
Msa1124540 MtrunA17_Chr5g0436701 34.286 245 140 7 11 240 45 283 3.02e-31 116
Msa1124540 MtrunA17_Chr2g0284611 34.468 235 145 5 16 248 33 260 1.13e-27 107
Msa1124540 MtrunA17_Chr2g0284591 34.016 244 150 5 1 240 13 249 2.11e-27 106
Msa1124540 MtrunA17_Chr3g0079421 36.638 232 122 9 25 249 30 243 1.10e-25 101
Msa1124540 MtrunA17_Chr8g0379901 35.616 219 131 6 20 236 38 248 1.95e-25 101
Msa1124540 MtrunA17_Chr5g0435051 33.937 221 131 5 20 236 39 248 6.67e-25 99.8
Msa1124540 MtrunA17_Chr2g0284631 33.621 232 140 6 20 249 90 309 8.77e-25 100
Msa1124540 MtrunA17_Chr4g0001221 36.893 206 113 5 25 225 79 272 2.40e-23 96.3
Msa1124540 MtrunA17_Chr8g0379911 32.365 241 143 7 4 236 19 247 5.11e-23 94.4
Msa1124540 MtrunA17_Chr2g0333771 35.922 206 115 6 25 225 84 277 5.30e-23 95.1
Msa1124540 MtrunA17_Chr7g0217331 32.751 229 147 3 21 249 37 258 1.66e-22 93.2
Msa1124540 MtrunA17_Chr2g0284581 32.889 225 141 6 20 243 37 252 8.55e-22 91.3
Msa1124540 MtrunA17_Chr1g0184541 30.837 227 148 5 24 249 65 283 1.33e-21 91.3
Msa1124540 MtrunA17_Chr1g0201331 33.913 230 140 7 19 246 73 292 5.13e-21 89.7
Msa1124540 MtrunA17_Chr4g0044201 30.493 223 126 5 20 236 34 233 3.35e-20 86.7
Msa1124540 MtrunA17_Chr2g0284601 34.171 199 123 5 46 243 13 204 3.75e-19 83.2
Msa1124540 MtrunA17_Chr4g0038591 28.235 255 149 9 12 243 42 285 1.12e-16 78.2
Msa1124540 MtrunA17_Chr6g0467461 36.364 110 50 3 129 237 3 93 1.37e-13 65.5
Msa1124540 MtrunA17_Chr4g0038611 29.703 202 115 7 69 249 33 228 3.92e-13 67.4
Msa1124540 MtrunA17_Chr8g0362451 34.314 102 48 2 143 244 6 88 9.66e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124540 AT2G36830.1 79.681 251 50 1 1 250 1 251 1.23e-141 397
Msa1124540 AT3G26520.1 75.099 253 60 3 1 250 1 253 3.24e-130 369
Msa1124540 AT4G01470.1 71.825 252 69 2 1 250 1 252 2.85e-121 346
Msa1124540 AT5G47450.1 62.195 246 91 2 5 249 3 247 2.82e-95 280
Msa1124540 AT3G16240.1 57.600 250 104 2 3 250 1 250 1.04e-89 266
Msa1124540 AT1G73190.1 56.107 262 100 3 4 250 7 268 5.80e-87 259
Msa1124540 AT1G17810.1 55.939 261 101 3 4 250 7 267 1.16e-86 258
Msa1124540 AT4G17340.1 60.976 246 94 2 5 249 3 247 1.01e-84 253
Msa1124540 AT2G25810.1 50.403 248 116 4 3 249 1 242 7.78e-72 220
Msa1124540 AT3G47440.1 45.662 219 115 4 18 234 20 236 2.57e-49 163
Msa1124540 AT2G37170.1 36.255 251 141 7 12 245 28 276 2.37e-38 135
Msa1124540 AT2G37170.2 36.255 251 141 7 12 245 71 319 3.43e-38 136
Msa1124540 AT2G37180.1 36.255 251 141 7 12 245 28 276 4.00e-38 135
Msa1124540 AT3G53420.1 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1124540 AT3G53420.2 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1124540 AT2G39010.1 34.940 249 142 6 2 234 22 266 2.88e-37 132
Msa1124540 AT3G54820.1 36.522 230 129 5 21 234 38 266 5.31e-37 132
Msa1124540 AT5G60660.1 35.270 241 139 6 12 236 30 269 1.59e-34 125
Msa1124540 AT2G16850.1 37.327 217 121 5 21 225 36 249 1.61e-34 125
Msa1124540 AT4G35100.1 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1124540 AT4G35100.2 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1124540 AT4G00430.1 34.454 238 141 5 11 236 43 277 2.06e-33 122
Msa1124540 AT3G61430.2 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1124540 AT3G61430.1 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1124540 AT2G45960.1 36.207 232 132 6 21 240 52 279 5.11e-33 121
Msa1124540 AT4G23400.1 35.776 232 126 7 21 236 53 277 5.22e-33 121
Msa1124540 AT1G01620.1 34.649 228 134 5 21 236 52 276 2.01e-32 120
Msa1124540 AT1G01620.2 37.234 188 103 5 63 236 18 204 3.38e-28 107
Msa1124540 AT1G80760.1 34.667 225 128 6 25 243 84 295 1.68e-25 102
Msa1124540 AT2G45960.3 33.790 219 120 6 21 217 52 267 2.54e-24 99.0
Msa1124540 AT2G45960.2 34.783 207 120 5 21 215 52 255 3.12e-24 98.2
Msa1124540 AT5G37820.1 34.081 223 137 5 24 245 46 259 1.51e-22 94.0
Msa1124540 AT4G10380.1 34.764 233 141 5 17 246 72 296 2.63e-22 93.6
Msa1124540 AT5G37820.2 34.081 223 137 5 24 245 82 295 2.94e-22 94.0
Msa1124540 AT2G39010.2 34.857 175 101 4 2 167 22 192 4.56e-22 91.3
Msa1124540 AT4G19030.1 31.858 226 124 6 20 230 54 264 7.56e-22 92.4
Msa1124540 AT4G18910.1 31.034 232 131 6 20 236 51 268 1.10e-21 91.7
Msa1124540 AT5G37810.1 33.036 224 141 5 24 245 46 262 1.76e-21 90.9
Msa1124540 AT1G52180.1 48.352 91 47 0 125 215 34 124 6.31e-21 85.5
Msa1124540 AT3G06100.1 28.452 239 165 3 2 240 27 259 7.78e-21 89.0
Msa1124540 AT3G06100.2 30.332 211 141 3 24 234 1 205 4.26e-20 86.3
Msa1124540 AT1G31885.1 34.272 213 121 5 24 226 46 249 6.41e-20 87.4
Msa1124540 AT1G31885.2 37.179 156 88 3 78 225 41 194 3.48e-17 79.0
Msa1124540 AT4G00430.2 33.951 162 99 3 11 167 43 201 6.08e-17 77.4
Msa1124540 AT2G34390.1 30.222 225 141 6 20 236 47 263 2.72e-14 71.2
Msa1124540 AT2G34390.2 30.317 221 138 6 24 236 9 221 5.09e-14 70.1
Msa1124540 AT3G06100.3 32.308 130 87 1 105 234 44 172 1.65e-13 67.8
Msa1124540 AT4G19030.3 29.891 184 100 5 20 188 54 223 1.22e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATAATAGCTCCAAAAT+TGG 0.192946 7_3:+75709608 None:intergenic
ATTCCAATGTTACCCTTCTT+TGG 0.212168 7_3:+75708739 None:intergenic
ATGTTGATTCCTCCCAATTT+TGG 0.212841 7_3:-75709621 Msa1124540:five_prime_UTR
CATTGTTGGTGCTAACATTT+TGG 0.214654 7_3:-75708692 Msa1124540:CDS
CTGAATCAATGTTATAATTT+CGG 0.220298 7_3:-75708252 Msa1124540:three_prime_UTR
AGAAAAGAAACAATGTTATT+TGG 0.222570 7_3:+75709662 None:intergenic
ATGCTTGTGTCTTACTTATA+TGG 0.225708 7_3:+75709515 None:intergenic
GTTACTGTGAAAGCGCTTTC+TGG 0.244535 7_3:+75709464 None:intergenic
TGAATCAATGTTATAATTTC+GGG 0.256983 7_3:-75708251 Msa1124540:three_prime_UTR
GGTCCAACCACTGGGTCTAC+TGG 0.291738 7_3:-75708597 Msa1124540:CDS
TACTGGGCTGGCCCACTTAT+CGG 0.311103 7_3:-75708580 Msa1124540:CDS
TTATGAAAGAAATTCTAATA+TGG 0.321319 7_3:-75709593 Msa1124540:five_prime_UTR
CTTATCGGTGGTGGAATTGC+TGG 0.323157 7_3:-75708565 Msa1124540:CDS
GTCTTCGCCGGTTCAGGTTC+CGG 0.329402 7_3:-75709300 Msa1124540:CDS
TTCCAATGTTACCCTTCTTT+GGG 0.343393 7_3:+75708740 None:intergenic
ATTATTGCACCAATTGCTAT+TGG 0.349026 7_3:-75708718 Msa1124540:CDS
TTGGAGATTGTGATGACCTT+TGG 0.349069 7_3:-75708796 Msa1124540:CDS
ATCTTCGTCTTCGCCGGTTC+AGG 0.350013 7_3:-75709306 Msa1124540:CDS
TTGGTTGGTGGAGCCTTTAC+CGG 0.366838 7_3:-75708673 Msa1124540:CDS
GCTGGAGCTGGTCCAACCAC+TGG 0.370487 7_3:-75708606 Msa1124540:CDS
ATTGCTATTGGTTTCATTGT+TGG 0.373919 7_3:-75708706 Msa1124540:CDS
CCCAACTACTGACTACTAGA+TGG 0.375801 7_3:-75708497 Msa1124540:exon
CTCAGCCAAACCAGCTTTCA+AGG 0.378565 7_3:+75709344 None:intergenic
AAATGGTGGCCGTTGATCTT+TGG 0.379333 7_3:-75708359 Msa1124540:three_prime_UTR
AAACCAGCTTTCAAGGTGTC+TGG 0.380207 7_3:+75709351 None:intergenic
AGTTGGAGTTGGACCAGCTT+TGG 0.387058 7_3:-75708821 Msa1124540:CDS
CTGCTGTTGTGAGCTGGAGC+TGG 0.387382 7_3:-75708618 Msa1124540:CDS
AGACACCTTGAAAGCTGGTT+TGG 0.388141 7_3:-75709349 Msa1124540:CDS
TCGGGCCTGCTGTTGTGAGC+TGG 0.388266 7_3:-75708624 Msa1124540:CDS
TTCATAATAGCTCCAAAATT+GGG 0.390433 7_3:+75709609 None:intergenic
GAATGACACTGCTGGGTTCA+TGG 0.394289 7_3:+75708645 None:intergenic
CCCATCTAGTAGTCAGTAGT+TGG 0.396152 7_3:+75708496 None:intergenic
TGCGATACCGGAACCTGAAC+CGG 0.401710 7_3:+75709293 None:intergenic
TTGCAGTCTGTTCCAGCATT+CGG 0.404116 7_3:-75708856 Msa1124540:intron
CCTCGTCTTTGTTACCGCTT+CGG 0.409303 7_3:-75709040 Msa1124540:intron
CAGTAGTTGGGAGCTGCTCA+TGG 0.412257 7_3:+75708509 None:intergenic
TGAACCCAGCAGTGTCATTC+GGG 0.413725 7_3:-75708642 Msa1124540:CDS
AACCACTGGGTCTACTGGGC+TGG 0.414067 7_3:-75708592 Msa1124540:CDS
CTCTTTGTTGCTGTCTCCGT+TGG 0.414749 7_3:-75709195 Msa1124540:CDS
ATGAACCCAGCAGTGTCATT+CGG 0.415899 7_3:-75708643 Msa1124540:CDS
TTGTACATGCTTGGCCTAGC+AGG 0.416679 7_3:-75708297 Msa1124540:three_prime_UTR
TTTGGTTCACCGGTTGTAAC+GGG 0.422320 7_3:+75709552 None:intergenic
ACCTTCATCTTCGTCTTCGC+CGG 0.425837 7_3:-75709312 Msa1124540:CDS
GTCAACCCTGCTGTCACCTT+CGG 0.428106 7_3:-75709150 Msa1124540:CDS
TGTACGTTGGTTAGTGATGA+TGG 0.439031 7_3:-75708335 Msa1124540:three_prime_UTR
GTCCAACCACTGGGTCTACT+GGG 0.451536 7_3:-75708596 Msa1124540:CDS
TAATATGGAAATATATCAAC+CGG 0.454291 7_3:-75709578 Msa1124540:five_prime_UTR
AATTGCTGGGCTTGTCTATG+AGG 0.457537 7_3:-75708551 Msa1124540:CDS
TGCTGGGTTCATGGATGCTC+CGG 0.461853 7_3:+75708654 None:intergenic
CTGGAGCTGGTCCAACCACT+GGG 0.462301 7_3:-75708605 Msa1124540:CDS
GACGGTGCTGCCACCCCTGC+CGG 0.462881 7_3:-75709252 Msa1124540:CDS
CACCCAGACACCTTGAAAGC+TGG 0.464496 7_3:-75709354 Msa1124540:CDS
ACCTTCGGTGCCTTCGTTGG+TGG 0.466591 7_3:-75709135 Msa1124540:CDS
GTCACCTTCGGTGCCTTCGT+TGG 0.467369 7_3:-75709138 Msa1124540:CDS
CCCTCTGATAGTCCGAATGC+TGG 0.468725 7_3:+75708844 None:intergenic
AAGCTTGTTGTATGCGATAC+CGG 0.471031 7_3:+75709281 None:intergenic
AACCGGTAACCCGTTACAAC+CGG 0.475571 7_3:-75709561 Msa1124540:five_prime_UTR
GAGGCAGAGATGAGACCGGC+AGG 0.478206 7_3:+75709237 None:intergenic
TCCGTTGGTGCTAACATCTC+CGG 0.479679 7_3:-75709180 Msa1124540:CDS
ACAATGAAACCAATAGCAAT+TGG 0.481653 7_3:+75708709 None:intergenic
TACATCATCGCTCAACTCCT+CGG 0.483632 7_3:-75709084 Msa1124540:CDS
GTTACCCTTCTTTGGGTCAA+CGG 0.486754 7_3:+75708747 None:intergenic
GTTATAATTTCGGGTCTGCT+TGG 0.490312 7_3:-75708242 Msa1124540:three_prime_UTR
CTAGCAGGTTCTTAGTCAGC+AGG 0.496036 7_3:-75708282 Msa1124540:three_prime_UTR
GGCAGAGATGAGACCGGCAG+GGG 0.496508 7_3:+75709239 None:intergenic
GTTCATGGATGCTCCGGTAA+AGG 0.500331 7_3:+75708660 None:intergenic
AGAGATGAGACCGGCAGGGG+TGG 0.506184 7_3:+75709242 None:intergenic
CCATCTAGTAGTCAGTAGTT+GGG 0.508206 7_3:+75708497 None:intergenic
CAGCTCCAGCTCACAACAGC+AGG 0.509110 7_3:+75708619 None:intergenic
CAACAAAGAGAGCGAATGCA+TGG 0.509622 7_3:+75709208 None:intergenic
GCAGGCCCGAATGACACTGC+TGG 0.511306 7_3:+75708637 None:intergenic
ACAATCTCCAACACCAAAGC+TGG 0.516165 7_3:+75708808 None:intergenic
GCAATTCCACCACCGATAAG+TGG 0.516249 7_3:+75708568 None:intergenic
TTATCGGTGGTGGAATTGCT+GGG 0.516651 7_3:-75708564 Msa1124540:CDS
GATTGTGATGACCTTTGGAT+TGG 0.517625 7_3:-75708791 Msa1124540:CDS
AGCGAATGCATGGGCGATGG+AGG 0.527289 7_3:+75709218 None:intergenic
GCTGGCCCACTTATCGGTGG+TGG 0.532535 7_3:-75708574 Msa1124540:CDS
TCTGGGTGAGTTGCCTCTTG+AGG 0.532672 7_3:+75709369 None:intergenic
AACCAGCTTTCAAGGTGTCT+GGG 0.534447 7_3:+75709352 None:intergenic
AGTAGTTGGGAGCTGCTCAT+GGG 0.538709 7_3:+75708510 None:intergenic
TACAGCCGTTGACCCAAAGA+AGG 0.539491 7_3:-75708752 Msa1124540:CDS
CTATCAGAGGGAGTTGGAGT+TGG 0.543695 7_3:-75708832 Msa1124540:CDS
AGTTGGACCAGCTTTGGTGT+TGG 0.548732 7_3:-75708815 Msa1124540:CDS
AAGGCACCGAAGGTGACAGC+AGG 0.549431 7_3:+75709144 None:intergenic
GTTACAACCGGTGAACCAAA+AGG 0.550412 7_3:-75709549 Msa1124540:five_prime_UTR
AAATTATAACATTGATTCAG+TGG 0.559617 7_3:+75708255 None:intergenic
ACCGGAGATGTTAGCACCAA+CGG 0.561542 7_3:+75709179 None:intergenic
GAGAGCGAATGCATGGGCGA+TGG 0.568019 7_3:+75709215 None:intergenic
TTCGGACTATCAGAGGGAGT+TGG 0.568192 7_3:-75708838 Msa1124540:CDS
GTTGATCTTTGGTTGTACGT+TGG 0.568559 7_3:-75708348 Msa1124540:three_prime_UTR
GATGGAGGCAGAGATGAGAC+CGG 0.570486 7_3:+75709233 None:intergenic
TGTAAACGATACCACGGAGG+AGG 0.570553 7_3:+75709103 None:intergenic
CAGGCCCGAATGACACTGCT+GGG 0.571592 7_3:+75708638 None:intergenic
AGCCCAGTAGACCCAGTGGT+TGG 0.571603 7_3:+75708594 None:intergenic
CCAACTACTGACTACTAGAT+GGG 0.574858 7_3:-75708496 Msa1124540:exon
GAGGAGGGCGGAAGCAACGA+TGG 0.575546 7_3:+75709059 None:intergenic
TTACTTATATGGAGAACGAC+CGG 0.590638 7_3:+75709526 None:intergenic
AGCAGGGTTGACATGTCCAC+CGG 0.597068 7_3:+75709161 None:intergenic
GTTGGTTAGTGATGATGGAA+TGG 0.597136 7_3:-75708330 Msa1124540:three_prime_UTR
TCCAGCATTCGGACTATCAG+AGG 0.598958 7_3:-75708845 Msa1124540:CDS
ACCGGCGAAGACGAAGATGA+AGG 0.599996 7_3:+75709311 None:intergenic
AGGGGTGGCAGCACCGTCGT+TGG 0.600822 7_3:+75709257 None:intergenic
GACCCAAAGAAGGGTAACAT+TGG 0.607785 7_3:-75708742 Msa1124540:CDS
TATAAGTAAGACACAAGCAT+AGG 0.608314 7_3:-75709512 Msa1124540:five_prime_UTR
CAATTCCACCACCGATAAGT+GGG 0.611426 7_3:+75708569 None:intergenic
CTGCTGACTAAGAACCTGCT+AGG 0.612472 7_3:+75708283 None:intergenic
ACCACCAACGAAGGCACCGA+AGG 0.616088 7_3:+75709134 None:intergenic
TGCCTCTTGAGGAGTTCCTA+CGG 0.618685 7_3:+75709380 None:intergenic
AACAAAGAGAGCGAATGCAT+GGG 0.618823 7_3:+75709209 None:intergenic
AGGCAGAGATGAGACCGGCA+GGG 0.622500 7_3:+75709238 None:intergenic
TTATAACATTGATTCAGTGG+TGG 0.622918 7_3:+75708258 None:intergenic
AGCGGTAACAAAGACGAGGA+GGG 0.625271 7_3:+75709044 None:intergenic
CGGAAGCAACGATGGATCCG+AGG 0.625561 7_3:+75709067 None:intergenic
AACGTACAACCAAAGATCAA+CGG 0.631888 7_3:+75708350 None:intergenic
ATAATAGCTCCAAAATTGGG+AGG 0.634095 7_3:+75709612 None:intergenic
ACAGCCGTTGACCCAAAGAA+GGG 0.637474 7_3:-75708751 Msa1124540:CDS
CCGATCAGAAACATCGCCGT+AGG 0.641211 7_3:-75709396 Msa1124540:CDS
CACTGTGTACACCAATCCAA+AGG 0.645737 7_3:+75708780 None:intergenic
TGGGCTGGCCCACTTATCGG+TGG 0.647241 7_3:-75708577 Msa1124540:CDS
CCAGCATTCGGACTATCAGA+GGG 0.651221 7_3:-75708844 Msa1124540:CDS
TGTATAGTATCTTACCGAAG+CGG 0.651517 7_3:+75709026 None:intergenic
AAGCGGTAACAAAGACGAGG+AGG 0.654245 7_3:+75709043 None:intergenic
CCTACGGCGATGTTTCTGAT+CGG 0.655680 7_3:+75709396 None:intergenic
GTAAACGATACCACGGAGGA+GGG 0.659135 7_3:+75709104 None:intergenic
CAACCGGTGAACCAAAAGGC+CGG 0.660337 7_3:-75709545 Msa1124540:five_prime_UTR
GTTGGTGCTAACATCTCCGG+TGG 0.661142 7_3:-75709177 Msa1124540:CDS
GGCCAGCCCAGTAGACCCAG+TGG 0.666619 7_3:+75708590 None:intergenic
TACAACAAGCTTACCAACGA+CGG 0.666995 7_3:-75709270 Msa1124540:CDS
AGGCACCGAAGGTGACAGCA+GGG 0.669546 7_3:+75709145 None:intergenic
GGTAACAAAGACGAGGAGGG+CGG 0.672640 7_3:+75709047 None:intergenic
GGTAACATCACCCTCCTCCG+TGG 0.681289 7_3:-75709114 Msa1124540:CDS
CCGAAGCGGTAACAAAGACG+AGG 0.684473 7_3:+75709040 None:intergenic
GGTGATGTTACCACCAACGA+AGG 0.686744 7_3:+75709125 None:intergenic
CGATGATGTAAACGATACCA+CGG 0.702096 7_3:+75709097 None:intergenic
TGATGTAAACGATACCACGG+AGG 0.802444 7_3:+75709100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAAGAAATTCTAATA+TGG - chr7_3:75708206-75708225 Msa1124540:three_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG + chr7_3:75709616-75709635 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG + chr7_3:75709617-75709636 None:intergenic 15.0%
!! TTATGAAAGAAATTCTAATA+TGG - chr7_3:75708206-75708225 Msa1124540:three_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG + chr7_3:75709616-75709635 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG + chr7_3:75709617-75709636 None:intergenic 15.0%
!! AGAAAAGAAACAATGTTATT+TGG + chr7_3:75708140-75708159 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG - chr7_3:75708139-75708158 Msa1124540:three_prime_UTR 20.0%
!! TAATATGGAAATATATCAAC+CGG - chr7_3:75708221-75708240 Msa1124540:three_prime_UTR 20.0%
!! ATGCAACTTTAATATTTCAT+CGG - chr7_3:75708865-75708884 Msa1124540:intron 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG - chr7_3:75709398-75709417 Msa1124540:CDS 20.0%
!!! TAAATTATTTTGTACATGCT+TGG - chr7_3:75709493-75709512 Msa1124540:five_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG + chr7_3:75709547-75709566 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG - chr7_3:75709547-75709566 Msa1124540:five_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG - chr7_3:75709548-75709567 Msa1124540:five_prime_UTR 20.0%
!! AGAAAAGAAACAATGTTATT+TGG + chr7_3:75708140-75708159 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG - chr7_3:75708139-75708158 Msa1124540:three_prime_UTR 20.0%
!! TAATATGGAAATATATCAAC+CGG - chr7_3:75708221-75708240 Msa1124540:three_prime_UTR 20.0%
!! ATGCAACTTTAATATTTCAT+CGG - chr7_3:75708865-75708884 Msa1124540:intron 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG - chr7_3:75709398-75709417 Msa1124540:CDS 20.0%
!!! TAAATTATTTTGTACATGCT+TGG - chr7_3:75709493-75709512 Msa1124540:five_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG + chr7_3:75709547-75709566 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG - chr7_3:75709547-75709566 Msa1124540:five_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG - chr7_3:75709548-75709567 Msa1124540:five_prime_UTR 20.0%
! TTCATAATAGCTCCAAAATT+GGG + chr7_3:75708193-75708212 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG + chr7_3:75708194-75708213 None:intergenic 25.0%
! AATTAAACTCTTGCATGTTA+GGG + chr7_3:75708842-75708861 None:intergenic 25.0%
! AAATTAAACTCTTGCATGTT+AGG + chr7_3:75708843-75708862 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG + chr7_3:75709392-75709411 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG - chr7_3:75709397-75709416 Msa1124540:CDS 25.0%
! CAACCCTCAATAATTAAAAA+AGG + chr7_3:75709404-75709423 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG - chr7_3:75709423-75709442 Msa1124540:five_prime_UTR 25.0%
!! AAGAAACAATGTTATTTGGT+GGG + chr7_3:75708136-75708155 None:intergenic 25.0%
!! AAAGAAACAATGTTATTTGG+TGG + chr7_3:75708137-75708156 None:intergenic 25.0%
! TTCATAATAGCTCCAAAATT+GGG + chr7_3:75708193-75708212 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG + chr7_3:75708194-75708213 None:intergenic 25.0%
! AATTAAACTCTTGCATGTTA+GGG + chr7_3:75708842-75708861 None:intergenic 25.0%
! AAATTAAACTCTTGCATGTT+AGG + chr7_3:75708843-75708862 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG + chr7_3:75709392-75709411 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG - chr7_3:75709397-75709416 Msa1124540:CDS 25.0%
! CAACCCTCAATAATTAAAAA+AGG + chr7_3:75709404-75709423 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG - chr7_3:75709423-75709442 Msa1124540:five_prime_UTR 25.0%
ATGCTTGTGTCTTACTTATA+TGG + chr7_3:75708287-75708306 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG - chr7_3:75708287-75708306 Msa1124540:three_prime_UTR 30.0%
ATTATTGCACCAATTGCTAT+TGG - chr7_3:75709081-75709100 Msa1124540:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG + chr7_3:75709093-75709112 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG - chr7_3:75709093-75709112 Msa1124540:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG - chr7_3:75709426-75709445 Msa1124540:five_prime_UTR 30.0%
!! TTATAACATTGATTCAGTGG+TGG + chr7_3:75709544-75709563 None:intergenic 30.0%
ATGCTTGTGTCTTACTTATA+TGG + chr7_3:75708287-75708306 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG - chr7_3:75708287-75708306 Msa1124540:three_prime_UTR 30.0%
ATTATTGCACCAATTGCTAT+TGG - chr7_3:75709081-75709100 Msa1124540:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG + chr7_3:75709093-75709112 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG - chr7_3:75709093-75709112 Msa1124540:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG - chr7_3:75709426-75709445 Msa1124540:five_prime_UTR 30.0%
!! TTATAACATTGATTCAGTGG+TGG + chr7_3:75709544-75709563 None:intergenic 30.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG - chr7_3:75708144-75708163 Msa1124540:three_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG - chr7_3:75708178-75708197 Msa1124540:three_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG + chr7_3:75708190-75708209 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG + chr7_3:75708276-75708295 None:intergenic 35.0%
TGTATAGTATCTTACCGAAG+CGG + chr7_3:75708776-75708795 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG + chr7_3:75709062-75709081 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG + chr7_3:75709063-75709082 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG - chr7_3:75709107-75709126 Msa1124540:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG + chr7_3:75709452-75709471 None:intergenic 35.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG - chr7_3:75708144-75708163 Msa1124540:three_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG - chr7_3:75708178-75708197 Msa1124540:three_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG + chr7_3:75708190-75708209 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG + chr7_3:75708276-75708295 None:intergenic 35.0%
TGTATAGTATCTTACCGAAG+CGG + chr7_3:75708776-75708795 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG + chr7_3:75709062-75709081 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG + chr7_3:75709063-75709082 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG - chr7_3:75709107-75709126 Msa1124540:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG + chr7_3:75709452-75709471 None:intergenic 35.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG + chr7_3:75708251-75708270 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG + chr7_3:75708521-75708540 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG - chr7_3:75708529-75708548 Msa1124540:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG + chr7_3:75708593-75708612 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG + chr7_3:75708705-75708724 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG - chr7_3:75709003-75709022 Msa1124540:intron 40.0%
GATTGTGATGACCTTTGGAT+TGG - chr7_3:75709008-75709027 Msa1124540:intron 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG - chr7_3:75709111-75709130 Msa1124540:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG + chr7_3:75709305-75709324 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG - chr7_3:75709303-75709322 Msa1124540:CDS 40.0%
GTTGATCTTTGGTTGTACGT+TGG - chr7_3:75709451-75709470 Msa1124540:five_prime_UTR 40.0%
! TGTACGTTGGTTAGTGATGA+TGG - chr7_3:75709464-75709483 Msa1124540:five_prime_UTR 40.0%
!! GTTGGTTAGTGATGATGGAA+TGG - chr7_3:75709469-75709488 Msa1124540:five_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+TGG - chr7_3:75709557-75709576 Msa1124540:five_prime_UTR 40.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG + chr7_3:75708251-75708270 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG + chr7_3:75708521-75708540 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG - chr7_3:75708529-75708548 Msa1124540:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG + chr7_3:75708593-75708612 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG + chr7_3:75708705-75708724 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG - chr7_3:75709003-75709022 Msa1124540:intron 40.0%
GATTGTGATGACCTTTGGAT+TGG - chr7_3:75709008-75709027 Msa1124540:intron 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG - chr7_3:75709111-75709130 Msa1124540:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG + chr7_3:75709305-75709324 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG - chr7_3:75709303-75709322 Msa1124540:CDS 40.0%
GTTGATCTTTGGTTGTACGT+TGG - chr7_3:75709451-75709470 Msa1124540:five_prime_UTR 40.0%
! TGTACGTTGGTTAGTGATGA+TGG - chr7_3:75709464-75709483 Msa1124540:five_prime_UTR 40.0%
!! GTTGGTTAGTGATGATGGAA+TGG - chr7_3:75709469-75709488 Msa1124540:five_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+TGG - chr7_3:75709557-75709576 Msa1124540:five_prime_UTR 40.0%
! TTTGGTTCACCGGTTGTAAC+GGG + chr7_3:75708250-75708269 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG - chr7_3:75708250-75708269 Msa1124540:three_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG + chr7_3:75708338-75708357 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG + chr7_3:75708450-75708469 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG + chr7_3:75708451-75708470 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG - chr7_3:75708450-75708469 Msa1124540:three_prime_UTR 45.0%
CAACAAAGAGAGCGAATGCA+TGG + chr7_3:75708594-75708613 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG + chr7_3:75708702-75708721 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG - chr7_3:75708715-75708734 Msa1124540:CDS 45.0%
TTGCAGTCTGTTCCAGCATT+CGG - chr7_3:75708943-75708962 Msa1124540:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG + chr7_3:75708994-75709013 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG + chr7_3:75709022-75709041 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG + chr7_3:75709055-75709074 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG - chr7_3:75709057-75709076 Msa1124540:CDS 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG - chr7_3:75709114-75709133 Msa1124540:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG - chr7_3:75709156-75709175 Msa1124540:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG + chr7_3:75709233-75709252 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG - chr7_3:75709235-75709254 Msa1124540:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG - chr7_3:75709248-75709267 Msa1124540:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG - chr7_3:75709302-75709321 Msa1124540:CDS 45.0%
CCCATCTAGTAGTCAGTAGT+TGG + chr7_3:75709306-75709325 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG - chr7_3:75709440-75709459 Msa1124540:five_prime_UTR 45.0%
! TTTGGTTCACCGGTTGTAAC+GGG + chr7_3:75708250-75708269 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG - chr7_3:75708250-75708269 Msa1124540:three_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG + chr7_3:75708338-75708357 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG + chr7_3:75708450-75708469 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG + chr7_3:75708451-75708470 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG - chr7_3:75708450-75708469 Msa1124540:three_prime_UTR 45.0%
CAACAAAGAGAGCGAATGCA+TGG + chr7_3:75708594-75708613 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG + chr7_3:75708702-75708721 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG - chr7_3:75708715-75708734 Msa1124540:CDS 45.0%
TTGCAGTCTGTTCCAGCATT+CGG - chr7_3:75708943-75708962 Msa1124540:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG + chr7_3:75708994-75709013 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG + chr7_3:75709022-75709041 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG + chr7_3:75709055-75709074 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG - chr7_3:75709057-75709076 Msa1124540:CDS 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG - chr7_3:75709114-75709133 Msa1124540:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG - chr7_3:75709156-75709175 Msa1124540:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG + chr7_3:75709233-75709252 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG - chr7_3:75709235-75709254 Msa1124540:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG - chr7_3:75709248-75709267 Msa1124540:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG - chr7_3:75709302-75709321 Msa1124540:CDS 45.0%
CCCATCTAGTAGTCAGTAGT+TGG + chr7_3:75709306-75709325 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG - chr7_3:75709440-75709459 Msa1124540:five_prime_UTR 45.0%
AACCGGTAACCCGTTACAAC+CGG - chr7_3:75708238-75708257 Msa1124540:three_prime_UTR 50.0%
! CCTACGGCGATGTTTCTGAT+CGG + chr7_3:75708406-75708425 None:intergenic 50.0%
TGCCTCTTGAGGAGTTCCTA+CGG + chr7_3:75708422-75708441 None:intergenic 50.0%
CTCAGCCAAACCAGCTTTCA+AGG + chr7_3:75708458-75708477 None:intergenic 50.0%
ACCTTCATCTTCGTCTTCGC+CGG - chr7_3:75708487-75708506 Msa1124540:exon 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG - chr7_3:75708604-75708623 Msa1124540:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG - chr7_3:75708619-75708638 Msa1124540:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG + chr7_3:75708623-75708642 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG + chr7_3:75708677-75708696 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG + chr7_3:75708698-75708717 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG + chr7_3:75708699-75708718 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG + chr7_3:75708758-75708777 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG + chr7_3:75708759-75708778 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG - chr7_3:75708759-75708778 Msa1124540:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG - chr7_3:75708954-75708973 Msa1124540:intron 50.0%
CCAGCATTCGGACTATCAGA+GGG - chr7_3:75708955-75708974 Msa1124540:intron 50.0%
TTCGGACTATCAGAGGGAGT+TGG - chr7_3:75708961-75708980 Msa1124540:intron 50.0%
CTATCAGAGGGAGTTGGAGT+TGG - chr7_3:75708967-75708986 Msa1124540:intron 50.0%
AGTTGGAGTTGGACCAGCTT+TGG - chr7_3:75708978-75708997 Msa1124540:intron 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG - chr7_3:75708984-75709003 Msa1124540:intron 50.0%
TACAGCCGTTGACCCAAAGA+AGG - chr7_3:75709047-75709066 Msa1124540:CDS 50.0%
ACAGCCGTTGACCCAAAGAA+GGG - chr7_3:75709048-75709067 Msa1124540:CDS 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG - chr7_3:75709126-75709145 Msa1124540:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG + chr7_3:75709142-75709161 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG + chr7_3:75709157-75709176 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG - chr7_3:75709157-75709176 Msa1124540:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG + chr7_3:75709234-75709253 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG - chr7_3:75709234-75709253 Msa1124540:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG + chr7_3:75709292-75709311 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG - chr7_3:75709502-75709521 Msa1124540:five_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG + chr7_3:75709519-75709538 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG - chr7_3:75709517-75709536 Msa1124540:five_prime_UTR 50.0%
AACCGGTAACCCGTTACAAC+CGG - chr7_3:75708238-75708257 Msa1124540:three_prime_UTR 50.0%
! CCTACGGCGATGTTTCTGAT+CGG + chr7_3:75708406-75708425 None:intergenic 50.0%
TGCCTCTTGAGGAGTTCCTA+CGG + chr7_3:75708422-75708441 None:intergenic 50.0%
CTCAGCCAAACCAGCTTTCA+AGG + chr7_3:75708458-75708477 None:intergenic 50.0%
ACCTTCATCTTCGTCTTCGC+CGG - chr7_3:75708487-75708506 Msa1124540:exon 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG - chr7_3:75708604-75708623 Msa1124540:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG - chr7_3:75708619-75708638 Msa1124540:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG + chr7_3:75708623-75708642 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG + chr7_3:75708677-75708696 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG + chr7_3:75708698-75708717 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG + chr7_3:75708699-75708718 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG + chr7_3:75708758-75708777 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG + chr7_3:75708759-75708778 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG - chr7_3:75708759-75708778 Msa1124540:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG - chr7_3:75708954-75708973 Msa1124540:intron 50.0%
CCAGCATTCGGACTATCAGA+GGG - chr7_3:75708955-75708974 Msa1124540:intron 50.0%
TTCGGACTATCAGAGGGAGT+TGG - chr7_3:75708961-75708980 Msa1124540:intron 50.0%
CTATCAGAGGGAGTTGGAGT+TGG - chr7_3:75708967-75708986 Msa1124540:intron 50.0%
AGTTGGAGTTGGACCAGCTT+TGG - chr7_3:75708978-75708997 Msa1124540:intron 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG - chr7_3:75708984-75709003 Msa1124540:intron 50.0%
TACAGCCGTTGACCCAAAGA+AGG - chr7_3:75709047-75709066 Msa1124540:CDS 50.0%
ACAGCCGTTGACCCAAAGAA+GGG - chr7_3:75709048-75709067 Msa1124540:CDS 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG - chr7_3:75709126-75709145 Msa1124540:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG + chr7_3:75709142-75709161 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG + chr7_3:75709157-75709176 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG - chr7_3:75709157-75709176 Msa1124540:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG + chr7_3:75709234-75709253 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG - chr7_3:75709234-75709253 Msa1124540:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG + chr7_3:75709292-75709311 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG - chr7_3:75709502-75709521 Msa1124540:five_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG + chr7_3:75709519-75709538 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG - chr7_3:75709517-75709536 Msa1124540:five_prime_UTR 50.0%
!! CACCGGTTGTAACGGGTTAC+CGG + chr7_3:75708243-75708262 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG - chr7_3:75708254-75708273 Msa1124540:three_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG + chr7_3:75708268-75708287 None:intergenic 55.0%
CCGATCAGAAACATCGCCGT+AGG - chr7_3:75708403-75708422 Msa1124540:three_prime_UTR 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG + chr7_3:75708433-75708452 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG - chr7_3:75708445-75708464 Msa1124540:three_prime_UTR 55.0%
ACCGGCGAAGACGAAGATGA+AGG + chr7_3:75708491-75708510 None:intergenic 55.0%
!! ATCTTCGTCTTCGCCGGTTC+AGG - chr7_3:75708493-75708512 Msa1124540:exon 55.0%
TGCGATACCGGAACCTGAAC+CGG + chr7_3:75708509-75708528 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG + chr7_3:75708569-75708588 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG - chr7_3:75708622-75708641 Msa1124540:CDS 55.0%
AGCAGGGTTGACATGTCCAC+CGG + chr7_3:75708641-75708660 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+CGG - chr7_3:75708649-75708668 Msa1124540:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG + chr7_3:75708755-75708774 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG + chr7_3:75708762-75708781 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG + chr7_3:75708958-75708977 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG + chr7_3:75709148-75709167 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG - chr7_3:75709203-75709222 Msa1124540:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG - chr7_3:75709219-75709238 Msa1124540:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG + chr7_3:75709293-75709312 None:intergenic 55.0%
!! CACCGGTTGTAACGGGTTAC+CGG + chr7_3:75708243-75708262 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG - chr7_3:75708254-75708273 Msa1124540:three_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG + chr7_3:75708268-75708287 None:intergenic 55.0%
CCGATCAGAAACATCGCCGT+AGG - chr7_3:75708403-75708422 Msa1124540:three_prime_UTR 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG + chr7_3:75708433-75708452 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG - chr7_3:75708445-75708464 Msa1124540:three_prime_UTR 55.0%
ACCGGCGAAGACGAAGATGA+AGG + chr7_3:75708491-75708510 None:intergenic 55.0%
!! ATCTTCGTCTTCGCCGGTTC+AGG - chr7_3:75708493-75708512 Msa1124540:exon 55.0%
TGCGATACCGGAACCTGAAC+CGG + chr7_3:75708509-75708528 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG + chr7_3:75708569-75708588 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG - chr7_3:75708622-75708641 Msa1124540:CDS 55.0%
AGCAGGGTTGACATGTCCAC+CGG + chr7_3:75708641-75708660 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+CGG - chr7_3:75708649-75708668 Msa1124540:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG + chr7_3:75708755-75708774 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG + chr7_3:75708762-75708781 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG + chr7_3:75708958-75708977 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG + chr7_3:75709148-75709167 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG - chr7_3:75709203-75709222 Msa1124540:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG - chr7_3:75709219-75709238 Msa1124540:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG + chr7_3:75709293-75709312 None:intergenic 55.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG + chr7_3:75708260-75708279 None:intergenic 60.0%
CGCCGTAGGAACTCCTCAAG+AGG - chr7_3:75708417-75708436 Msa1124540:three_prime_UTR 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG - chr7_3:75708499-75708518 Msa1124540:exon 60.0%
AGGCAGAGATGAGACCGGCA+GGG + chr7_3:75708564-75708583 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG + chr7_3:75708584-75708603 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG + chr7_3:75708587-75708606 None:intergenic 60.0%
!! AGGCACCGAAGGTGACAGCA+GGG + chr7_3:75708657-75708676 None:intergenic 60.0%
!! AAGGCACCGAAGGTGACAGC+AGG + chr7_3:75708658-75708677 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG - chr7_3:75708661-75708680 Msa1124540:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG - chr7_3:75708664-75708683 Msa1124540:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG + chr7_3:75708668-75708687 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG - chr7_3:75708685-75708704 Msa1124540:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG + chr7_3:75708735-75708754 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG + chr7_3:75709164-75709183 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG + chr7_3:75709183-75709202 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG - chr7_3:75709181-75709200 Msa1124540:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG - chr7_3:75709194-75709213 Msa1124540:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG - chr7_3:75709202-75709221 Msa1124540:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG + chr7_3:75709208-75709227 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG - chr7_3:75709207-75709226 Msa1124540:CDS 60.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG + chr7_3:75708260-75708279 None:intergenic 60.0%
CGCCGTAGGAACTCCTCAAG+AGG - chr7_3:75708417-75708436 Msa1124540:three_prime_UTR 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG - chr7_3:75708499-75708518 Msa1124540:exon 60.0%
AGGCAGAGATGAGACCGGCA+GGG + chr7_3:75708564-75708583 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG + chr7_3:75708584-75708603 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG + chr7_3:75708587-75708606 None:intergenic 60.0%
!! AGGCACCGAAGGTGACAGCA+GGG + chr7_3:75708657-75708676 None:intergenic 60.0%
!! AAGGCACCGAAGGTGACAGC+AGG + chr7_3:75708658-75708677 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG - chr7_3:75708661-75708680 Msa1124540:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG - chr7_3:75708664-75708683 Msa1124540:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG + chr7_3:75708668-75708687 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG - chr7_3:75708685-75708704 Msa1124540:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG + chr7_3:75708735-75708754 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG + chr7_3:75709164-75709183 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG + chr7_3:75709183-75709202 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG - chr7_3:75709181-75709200 Msa1124540:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG - chr7_3:75709194-75709213 Msa1124540:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG - chr7_3:75709202-75709221 Msa1124540:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG + chr7_3:75709208-75709227 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG - chr7_3:75709207-75709226 Msa1124540:CDS 60.0%
AGAGATGAGACCGGCAGGGG+TGG + chr7_3:75708560-75708579 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG + chr7_3:75708563-75708582 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG + chr7_3:75708565-75708584 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG + chr7_3:75708743-75708762 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG + chr7_3:75709165-75709184 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG - chr7_3:75709175-75709194 Msa1124540:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG - chr7_3:75709193-75709212 Msa1124540:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG - chr7_3:75709222-75709241 Msa1124540:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG - chr7_3:75709225-75709244 Msa1124540:CDS 65.0%
AGAGATGAGACCGGCAGGGG+TGG + chr7_3:75708560-75708579 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG + chr7_3:75708563-75708582 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG + chr7_3:75708565-75708584 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG + chr7_3:75708743-75708762 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG + chr7_3:75709165-75709184 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG - chr7_3:75709175-75709194 Msa1124540:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG - chr7_3:75709193-75709212 Msa1124540:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG - chr7_3:75709222-75709241 Msa1124540:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG - chr7_3:75709225-75709244 Msa1124540:CDS 65.0%
AGGGGTGGCAGCACCGTCGT+TGG + chr7_3:75708545-75708564 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG + chr7_3:75709212-75709231 None:intergenic 70.0%
AGGGGTGGCAGCACCGTCGT+TGG + chr7_3:75708545-75708564 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG + chr7_3:75709212-75709231 None:intergenic 70.0%
!! GACGGTGCTGCCACCCCTGC+CGG - chr7_3:75708547-75708566 Msa1124540:CDS 75.0%
!! GACGGTGCTGCCACCCCTGC+CGG - chr7_3:75708547-75708566 Msa1124540:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75708135 75709686 75708135 ID=Msa1124540;Name=Msa1124540
chr7_3 mRNA 75708135 75709686 75708135 ID=Msa1124540-mRNA-1;Parent=Msa1124540;Name=Msa1124540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=265|1|1|1|1|1|2|366|250
chr7_3 exon 75708135 75708872 75708135 ID=Msa1124540-mRNA-1:exon:20491;Parent=Msa1124540-mRNA-1
chr7_3 exon 75709041 75709686 75709041 ID=Msa1124540-mRNA-1:exon:20490;Parent=Msa1124540-mRNA-1
chr7_3 five_prime_UTR 75709422 75709686 75709422 ID=Msa1124540-mRNA-1:five_prime_utr;Parent=Msa1124540-mRNA-1
chr7_3 CDS 75709041 75709421 75709041 ID=Msa1124540-mRNA-1:cds;Parent=Msa1124540-mRNA-1
chr7_3 CDS 75708501 75708872 75708501 ID=Msa1124540-mRNA-1:cds;Parent=Msa1124540-mRNA-1
chr7_3 three_prime_UTR 75708135 75708500 75708135 ID=Msa1124540-mRNA-1:three_prime_utr;Parent=Msa1124540-mRNA-1
Gene Sequence

>Msa1124540

ATGCCGATCAGAAACATCGCCGTAGGAACTCCTCAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGTTTGGCTGAGTTCATCTCAACCTTCATCTTCGTCTTCGCCGGTTCAGGTTCCGGTATCGCATACAACAAGCTTACCAACGACGGTGCTGCCACCCCTGCCGGTCTCATCTCTGCCTCCATCGCCCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCTGCTGTCACCTTCGGTGCCTTCGTTGGTGGTAACATCACCCTCCTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTTGCTTCCGCCCTCCTCGTCTTTGTTACCGCTTCGTCTGTTCCAGCATTCGGACTATCAGAGGGAGTTGGAGTTGGACCAGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACAGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAACATTGGAATTATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGAGCCTTTACCGGAGCATCCATGAACCCAGCAGTGTCATTCGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGGTCTACTGGGCTGGCCCACTTATCGGTGGTGGAATTGCTGGGCTTGTCTATGAGGTTCTATTCATCAACAGCACCCATGAGCAGCTCCCAACTACTGACTACTAG

Protein sequence

>Msa1124540

MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY*