Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475810 | XP_013469779.1 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475810 | sp|Q8GTE3|RS3A_CICAR | 91.571 | 261 | 22 | 0 | 1 | 261 | 1 | 261 | 8.87e-172 | 477 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475810 | B7FLW8 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0475810 | 0.811990 | 5.310948e-51 | -8.615850e-47 |
| Msa0003360 | Msa0475810 | 0.826629 | 2.442105e-54 | -8.615850e-47 |
| Msa0016350 | Msa0475810 | 0.817150 | 3.828696e-52 | -8.615850e-47 |
| Msa0021290 | Msa0475810 | 0.867001 | 1.886976e-65 | -8.615850e-47 |
| Msa0021320 | Msa0475810 | 0.857390 | 1.685956e-62 | -8.615850e-47 |
| Msa0027590 | Msa0475810 | 0.839225 | 1.799329e-57 | -8.615850e-47 |
| Msa0036330 | Msa0475810 | 0.815409 | 9.383132e-52 | -8.615850e-47 |
| Msa0040220 | Msa0475810 | 0.987613 | 6.777661e-171 | -8.615850e-47 |
| Msa0042480 | Msa0475810 | 0.816521 | 5.298205e-52 | -8.615850e-47 |
| Msa0050860 | Msa0475810 | 0.829389 | 5.290827e-55 | -8.615850e-47 |
| Msa0070840 | Msa0475810 | 0.805885 | 1.075521e-49 | -8.615850e-47 |
| Msa0072570 | Msa0475810 | 0.825097 | 5.644977e-54 | -8.615850e-47 |
| Msa0075350 | Msa0475810 | 0.826674 | 2.383670e-54 | -8.615850e-47 |
| Msa0079590 | Msa0475810 | 0.825724 | 4.010372e-54 | -8.615850e-47 |
| Msa0084250 | Msa0475810 | 0.814182 | 1.754728e-51 | -8.615850e-47 |
| Msa0087910 | Msa0475810 | 0.928700 | 1.993133e-92 | -8.615850e-47 |
| Msa0110630 | Msa0475810 | 0.801259 | 9.797082e-49 | -8.615850e-47 |
| Msa0113920 | Msa0475810 | 0.813020 | 3.162159e-51 | -8.615850e-47 |
| Msa0114570 | Msa0475810 | 0.822364 | 2.464858e-53 | -8.615850e-47 |
| Msa0128330 | Msa0475810 | 0.813058 | 3.102405e-51 | -8.615850e-47 |
| Msa0132460 | Msa0475810 | 0.845880 | 3.080944e-59 | -8.615850e-47 |
| Msa0134580 | Msa0475810 | 0.922701 | 6.982048e-89 | -8.615850e-47 |
| Msa0144810 | Msa0475810 | 0.816228 | 6.160818e-52 | -8.615850e-47 |
| Msa0146580 | Msa0475810 | 0.838690 | 2.475588e-57 | -8.615850e-47 |
| Msa0172930 | Msa0475810 | 0.816522 | 5.294765e-52 | -8.615850e-47 |
| Msa0173250 | Msa0475810 | 0.843951 | 1.021701e-58 | -8.615850e-47 |
| Msa0174580 | Msa0475810 | 0.802677 | 5.008050e-49 | -8.615850e-47 |
| Msa0182050 | Msa0475810 | 0.848842 | 4.734849e-60 | -8.615850e-47 |
| Msa0188740 | Msa0475810 | 0.823414 | 1.403061e-53 | -8.615850e-47 |
| Msa0191450 | Msa0475810 | 0.840024 | 1.115457e-57 | -8.615850e-47 |
| Msa0191550 | Msa0475810 | 0.837389 | 5.350291e-57 | -8.615850e-47 |
| Msa0192050 | Msa0475810 | 0.830807 | 2.385070e-55 | -8.615850e-47 |
| Msa0192300 | Msa0475810 | 0.825273 | 5.128395e-54 | -8.615850e-47 |
| Msa0194940 | Msa0475810 | 0.877877 | 4.417137e-69 | -8.615850e-47 |
| Msa0210360 | Msa0475810 | 0.846477 | 2.119088e-59 | -8.615850e-47 |
| Msa0222730 | Msa0475810 | 0.853205 | 2.786577e-61 | -8.615850e-47 |
| Msa0228540 | Msa0475810 | 0.865509 | 5.609227e-65 | -8.615850e-47 |
| Msa0369410 | Msa0475810 | 0.861942 | 7.194616e-64 | -8.615850e-47 |
| Msa0371490 | Msa0475810 | 0.802149 | 6.432645e-49 | -8.615850e-47 |
| Msa0385030 | Msa0475810 | 0.813109 | 3.023105e-51 | -8.615850e-47 |
| Msa0389690 | Msa0475810 | 0.800756 | 1.241079e-48 | -8.615850e-47 |
| Msa0426090 | Msa0475810 | 0.905779 | 2.992798e-80 | -8.615850e-47 |
| Msa0426250 | Msa0475810 | 0.900081 | 1.046359e-77 | -8.615850e-47 |
| Msa0432750 | Msa0475810 | 0.816759 | 4.685761e-52 | -8.615850e-47 |
| Msa0437500 | Msa0475810 | 0.806588 | 7.646687e-50 | -8.615850e-47 |
| Msa0463520 | Msa0475810 | 0.840069 | 1.085493e-57 | -8.615850e-47 |
| Msa0472480 | Msa0475810 | 0.904252 | 1.489753e-79 | -8.615850e-47 |
| Msa0475810 | Msa0479980 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0475810 | Msa0481520 | 0.882189 | 1.283136e-70 | -8.615850e-47 |
| Msa0475810 | Msa0482260 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0475810 | Msa0482560 | 0.815969 | 7.038248e-52 | -8.615850e-47 |
| Msa0475810 | Msa0518590 | 0.812396 | 4.330600e-51 | -8.615850e-47 |
| Msa0475810 | Msa0529900 | 0.865319 | 6.438505e-65 | -8.615850e-47 |
| Msa0475810 | Msa0540480 | 0.828201 | 1.025329e-54 | -8.615850e-47 |
| Msa0475810 | Msa0547920 | 0.835155 | 1.978468e-56 | -8.615850e-47 |
| Msa0475810 | Msa0557720 | 0.821394 | 4.133320e-53 | -8.615850e-47 |
| Msa0475810 | Msa0573550 | 0.855016 | 8.367550e-62 | -8.615850e-47 |
| Msa0475810 | Msa0582070 | 0.849038 | 4.179187e-60 | -8.615850e-47 |
| Msa0475810 | Msa0596370 | 0.822517 | 2.270362e-53 | -8.615850e-47 |
| Msa0475810 | Msa0597240 | 0.855995 | 4.338317e-62 | -8.615850e-47 |
| Msa0475810 | Msa0602900 | 0.818186 | 2.235293e-52 | -8.615850e-47 |
| Msa0475810 | Msa0619230 | 0.830225 | 3.310263e-55 | -8.615850e-47 |
| Msa0475810 | Msa0622230 | 0.829103 | 6.207186e-55 | -8.615850e-47 |
| Msa0475810 | Msa0629280 | 0.818281 | 2.127272e-52 | -8.615850e-47 |
| Msa0475810 | Msa0643960 | 0.822221 | 2.659650e-53 | -8.615850e-47 |
| Msa0475810 | Msa0648620 | 0.806421 | 8.292127e-50 | -8.615850e-47 |
| Msa0475810 | Msa0648670 | 0.808312 | 3.294909e-50 | -8.615850e-47 |
| Msa0475810 | Msa0653060 | 0.921236 | 4.633648e-88 | -8.615850e-47 |
| Msa0475810 | Msa0656320 | 0.807320 | 5.353461e-50 | -8.615850e-47 |
| Msa0475810 | Msa0694400 | 0.839830 | 1.253136e-57 | -8.615850e-47 |
| Msa0475810 | Msa0705800 | 0.814034 | 1.892382e-51 | -8.615850e-47 |
| Msa0475810 | Msa0708630 | 0.845825 | 3.189602e-59 | -8.615850e-47 |
| Msa0475810 | Msa0717380 | 0.863155 | 3.045922e-64 | -8.615850e-47 |
| Msa0475810 | Msa0748350 | 0.826695 | 2.355788e-54 | -8.615850e-47 |
| Msa0475810 | Msa0758420 | 0.810263 | 1.257482e-50 | -8.615850e-47 |
| Msa0475810 | Msa0788380 | 0.840564 | 8.059189e-58 | -8.615850e-47 |
| Msa0475810 | Msa0790450 | 0.844149 | 9.042617e-59 | -8.615850e-47 |
| Msa0475810 | Msa0799830 | 0.882765 | 7.917781e-71 | -8.615850e-47 |
| Msa0475810 | Msa0838070 | 0.832490 | 9.178067e-56 | -8.615850e-47 |
| Msa0475810 | Msa0861320 | 0.870870 | 1.051983e-66 | -8.615850e-47 |
| Msa0475810 | Msa0929700 | 0.847960 | 8.308865e-60 | -8.615850e-47 |
| Msa0475810 | Msa0930100 | 0.815190 | 1.049695e-51 | -8.615850e-47 |
| Msa0475810 | Msa1025200 | 0.845386 | 4.196081e-59 | -8.615850e-47 |
| Msa0475810 | Msa1025220 | 0.832838 | 7.521634e-56 | -8.615850e-47 |
| Msa0475810 | Msa1037290 | 0.820414 | 6.946416e-53 | -8.615850e-47 |
| Msa0475810 | Msa1040160 | 0.889551 | 2.189664e-73 | -8.615850e-47 |
| Msa0475810 | Msa1041680 | 0.853296 | 2.624693e-61 | -8.615850e-47 |
| Msa0475810 | Msa1042100 | 0.802016 | 6.852390e-49 | -8.615850e-47 |
| Msa0475810 | Msa1050100 | 0.868002 | 9.020955e-66 | -8.615850e-47 |
| Msa0475810 | Msa1054280 | 0.859089 | 5.262028e-63 | -8.615850e-47 |
| Msa0475810 | Msa1078870 | 0.808102 | 3.653076e-50 | -8.615850e-47 |
| Msa0475810 | Msa1078980 | 0.829554 | 4.824267e-55 | -8.615850e-47 |
| Msa0475810 | Msa1082170 | 0.823864 | 1.101103e-53 | -8.615850e-47 |
| Msa0475810 | Msa1083370 | 0.919223 | 5.883628e-87 | -8.615850e-47 |
| Msa0475810 | Msa1089220 | 0.809449 | 1.881720e-50 | -8.615850e-47 |
| Msa0475810 | Msa1091290 | 0.833658 | 4.698262e-56 | -8.615850e-47 |
| Msa0475810 | Msa1096900 | 0.809560 | 1.781387e-50 | -8.615850e-47 |
| Msa0475810 | Msa1109310 | 0.821922 | 3.120888e-53 | -8.615850e-47 |
| Msa0475810 | Msa1116940 | 0.831634 | 1.493501e-55 | -8.615850e-47 |
| Msa0475810 | Msa1124850 | 0.831254 | 1.852430e-55 | -8.615850e-47 |
| Msa0475810 | Msa1126690 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0475810 | Msa1164150 | 0.814828 | 1.262623e-51 | -8.615850e-47 |
| Msa0475810 | Msa1165640 | 0.829996 | 3.765267e-55 | -8.615850e-47 |
| Msa0475810 | Msa1166570 | 0.857825 | 1.253555e-62 | -8.615850e-47 |
| Msa0475810 | Msa1166670 | 0.803493 | 3.395293e-49 | -8.615850e-47 |
| Msa0475810 | Msa1167540 | 0.850762 | 1.376899e-60 | -8.615850e-47 |
| Msa0475810 | Msa1169180 | 0.818374 | 2.026989e-52 | -8.615850e-47 |
| Msa0475810 | Msa1180000 | 0.807433 | 5.067428e-50 | -8.615850e-47 |
| Msa0475810 | Msa1186030 | 0.837721 | 4.396643e-57 | -8.615850e-47 |
| Msa0475810 | Msa1203560 | 0.874762 | 5.243287e-68 | -8.615850e-47 |
| Msa0475810 | Msa1206240 | 0.804175 | 2.451028e-49 | -8.615850e-47 |
| Msa0475810 | Msa1218170 | 0.821934 | 3.100165e-53 | -8.615850e-47 |
| Msa0475810 | Msa1218610 | 0.847989 | 8.157422e-60 | -8.615850e-47 |
| Msa0475810 | Msa1227080 | 0.832486 | 9.197879e-56 | -8.615850e-47 |
| Msa0475810 | Msa1237040 | 0.869154 | 3.829365e-66 | -8.615850e-47 |
| Msa0475810 | Msa1240270 | 0.825806 | 3.834963e-54 | -8.615850e-47 |
| Msa0475810 | Msa1255830 | 0.828023 | 1.131816e-54 | -8.615850e-47 |
| Msa0475810 | Msa1255850 | 0.845368 | 4.241971e-59 | -8.615850e-47 |
| Msa0475810 | Msa1258460 | 0.854266 | 1.380394e-61 | -8.615850e-47 |
| Msa0475810 | Msa1258540 | 0.870527 | 1.364761e-66 | -8.615850e-47 |
| Msa0475810 | Msa1278130 | 0.877438 | 6.281683e-69 | -8.615850e-47 |
| Msa0475810 | Msa1284060 | 0.832934 | 7.118598e-56 | -8.615850e-47 |
| Msa0475810 | Msa1311400 | 0.853101 | 2.985471e-61 | -8.615850e-47 |
| Msa0475810 | Msa1317390 | 0.839453 | 1.570155e-57 | -8.615850e-47 |
| Msa0475810 | Msa1332250 | 0.821258 | 4.443033e-53 | -8.615850e-47 |
| Msa0475810 | Msa1341780 | 0.844062 | 9.541337e-59 | -8.615850e-47 |
| Msa0475810 | Msa1363910 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0475810 | Msa1364110 | 0.816181 | 6.312578e-52 | -8.615850e-47 |
| Msa0475810 | Msa1368920 | 0.820901 | 5.367619e-53 | -8.615850e-47 |
| Msa0475810 | Msa1371410 | 0.815525 | 8.842278e-52 | -8.615850e-47 |
| Msa0475810 | Msa1385480 | 0.817636 | 2.976118e-52 | -8.615850e-47 |
| Msa0475810 | Msa1390760 | 0.827458 | 1.547110e-54 | -8.615850e-47 |
| Msa0475810 | Msa1392590 | 0.809962 | 1.460039e-50 | -8.615850e-47 |
| Msa0475810 | Msa1402010 | 0.830167 | 3.419853e-55 | -8.615850e-47 |
| Msa0475810 | Msa1403910 | 0.806971 | 6.348844e-50 | -8.615850e-47 |
| Msa0475810 | Msa1410570 | 0.867219 | 1.607729e-65 | -8.615850e-47 |
| Msa0475810 | Msa1415620 | 0.815138 | 1.077786e-51 | -8.615850e-47 |
| Msa0475810 | Msa1424570 | 0.839282 | 1.739438e-57 | -8.615850e-47 |
| Msa0475810 | Msa1426120 | 0.822672 | 2.089637e-53 | -8.615850e-47 |
| Msa0475810 | Msa1449160 | 0.857441 | 1.629094e-62 | -8.615850e-47 |
| Msa0475810 | Msa1450560 | 0.852078 | 5.844095e-61 | -8.615850e-47 |
| Msa0475810 | Msa1463570 | 0.815860 | 7.445836e-52 | -8.615850e-47 |
| Msa0265250 | Msa0475810 | 0.824627 | 7.285906e-54 | -8.615850e-47 |
| Msa0277600 | Msa0475810 | 0.802847 | 4.619225e-49 | -8.615850e-47 |
| Msa0297830 | Msa0475810 | 0.848327 | 6.576503e-60 | -8.615850e-47 |
| Msa0301220 | Msa0475810 | 0.874411 | 6.898985e-68 | -8.615850e-47 |
| Msa0301250 | Msa0475810 | 0.822983 | 1.768574e-53 | -8.615850e-47 |
| Msa0304250 | Msa0475810 | 0.801049 | 1.081450e-48 | -8.615850e-47 |
| Msa0313060 | Msa0475810 | 0.832153 | 1.111750e-55 | -8.615850e-47 |
| Msa0315430 | Msa0475810 | 0.849214 | 3.733000e-60 | -8.615850e-47 |
| Msa0335840 | Msa0475810 | 0.858972 | 5.704633e-63 | -8.615850e-47 |
| Msa0340560 | Msa0475810 | 0.826287 | 2.947769e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475810 | MtrunA17_Chr1g0204941 | 98.467 | 261 | 4 | 0 | 1 | 261 | 1 | 261 | 0.0 | 533 |
| Msa0475810 | MtrunA17_Chr3g0081171 | 96.169 | 261 | 10 | 0 | 1 | 261 | 1 | 261 | 0.0 | 499 |
| Msa0475810 | MtrunA17_Chr5g0394611 | 94.253 | 261 | 15 | 0 | 1 | 261 | 1 | 261 | 1.91e-176 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475810 | AT3G04840.1 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 1.15e-163 | 454 |
| Msa0475810 | AT4G34670.1 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 2.43e-161 | 448 |
Find 108 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATAGTTTGTTCAAATT+TGG | 0.152753 | 3_3:-79274269 | Msa0475810:three_prime_UTR |
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 3_3:+79275244 | None:intergenic |
| ATTGGATTGGCCATGGGAGC+TGG | 0.245100 | 3_3:-79274498 | Msa0475810:three_prime_UTR |
| GATATCATACCAATCCTTCT+TGG | 0.295389 | 3_3:+79276924 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.319619 | 3_3:-79274804 | Msa0475810:intron |
| GTTTCTCACCCCAAGTCTTT+TGG | 0.335249 | 3_3:-79274412 | Msa0475810:three_prime_UTR |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 3_3:-79275240 | Msa0475810:CDS |
| GAAATTGTTGGTGCTTGATT+TGG | 0.361312 | 3_3:-79274711 | Msa0475810:exon |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 3_3:-79277066 | Msa0475810:CDS |
| TTTATGTTACCGATGTTACT+TGG | 0.367972 | 3_3:+79277196 | None:intergenic |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 3_3:-79275229 | Msa0475810:CDS |
| AAATCAGATATGCATGCTAT+TGG | 0.370591 | 3_3:-79274516 | Msa0475810:three_prime_UTR |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 3_3:-79275336 | Msa0475810:CDS |
| GAGCTGGGTGATTATTGATT+TGG | 0.385457 | 3_3:-79274482 | Msa0475810:three_prime_UTR |
| GGGACGAAGAACATGCATTC+AGG | 0.393353 | 3_3:-79275989 | Msa0475810:CDS |
| TTTAGGTTTCTGATGGATGT+AGG | 0.394357 | 3_3:+79277171 | None:intergenic |
| GACTAATAAACATAAATAAC+AGG | 0.405449 | 3_3:+79274659 | None:intergenic |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 3_3:-79276863 | Msa0475810:CDS |
| AAGTATACATTTAACCTCAT+TGG | 0.408595 | 3_3:-79274368 | Msa0475810:three_prime_UTR |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 3_3:+79276931 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 3_3:-79276024 | Msa0475810:CDS |
| GGCCATGGTTTCACTGTTTG+CGG | 0.414266 | 3_3:+79277094 | None:intergenic |
| AATTCATTCCCGAGATGATT+GGG | 0.425172 | 3_3:-79275335 | Msa0475810:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 3_3:-79276011 | Msa0475810:CDS |
| AGCATCATCTTGTGATTTGA+AGG | 0.436321 | 3_3:-79275370 | Msa0475810:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 3_3:-79276938 | Msa0475810:CDS |
| TCCGTCGCCATTTCATCAGC+AGG | 0.447536 | 3_3:+79274744 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 3_3:-79276033 | Msa0475810:CDS |
| CAAAACAAAACCGCTGCACT+TGG | 0.454851 | 3_3:+79274598 | None:intergenic |
| TACCAAGAGGAGAGCTAACC+AGG | 0.455144 | 3_3:-79275691 | Msa0475810:CDS |
| TTGGATTGGCCATGGGAGCT+GGG | 0.455985 | 3_3:-79274497 | Msa0475810:three_prime_UTR |
| GGATGAACACGTTCTGCAAT+GGG | 0.459558 | 3_3:+79275280 | None:intergenic |
| ATCTTGTGATTTGAAGGGAT+TGG | 0.459981 | 3_3:-79275364 | Msa0475810:CDS |
| AACATGCATTCAGGAAGATT+AGG | 0.462005 | 3_3:-79275980 | Msa0475810:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 3_3:-79276933 | Msa0475810:CDS |
| ATCTCTTTCCCAATCATCTC+GGG | 0.472425 | 3_3:+79275327 | None:intergenic |
| CGGATGAACACGTTCTGCAA+TGG | 0.478333 | 3_3:+79275279 | None:intergenic |
| CTGACTAGATTGTGCATAGC+AGG | 0.478379 | 3_3:+79275659 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.479682 | 3_3:-79274751 | Msa0475810:CDS |
| GAAGGATTGGTATGATATCA+AGG | 0.488212 | 3_3:-79276920 | Msa0475810:CDS |
| GTCTCGTACTCAGGGTACTA+AGG | 0.497238 | 3_3:-79276854 | Msa0475810:intron |
| TGGTCAGATCCGTAGGAAGA+TGG | 0.499805 | 3_3:-79275412 | Msa0475810:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 3_3:+79275689 | None:intergenic |
| TTAGGTTTCTGATGGATGTA+GGG | 0.503263 | 3_3:+79277172 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.505511 | 3_3:-79274723 | Msa0475810:CDS |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 3_3:-79275799 | Msa0475810:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 3_3:-79275788 | Msa0475810:CDS |
| TCAAATCACAAGATGATGCT+TGG | 0.512552 | 3_3:+79275373 | None:intergenic |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 3_3:-79277056 | Msa0475810:CDS |
| TCATCTCGGGAATGAATTTG+AGG | 0.518795 | 3_3:+79275340 | None:intergenic |
| CATAGCAGGTCCTCTTCACC+TGG | 0.518854 | 3_3:+79275673 | None:intergenic |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 3_3:-79277065 | Msa0475810:CDS |
| CTTGTTCTTACCAACGGCCA+TGG | 0.523346 | 3_3:+79277079 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 3_3:-79276010 | Msa0475810:CDS |
| TATACATTTAACCTCATTGG+AGG | 0.528971 | 3_3:-79274365 | Msa0475810:three_prime_UTR |
| TTATGTTACCGATGTTACTT+GGG | 0.531693 | 3_3:+79277197 | None:intergenic |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 3_3:+79276884 | None:intergenic |
| CTTTATTTGGTCAGATCCGT+AGG | 0.534876 | 3_3:-79275419 | Msa0475810:intron |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 3_3:-79275957 | Msa0475810:CDS |
| ATGGGCACAACCAAAAGACT+TGG | 0.538736 | 3_3:+79274402 | None:intergenic |
| CAATAATCACCCAGCTCCCA+TGG | 0.543067 | 3_3:+79274488 | None:intergenic |
| GCATCATCTTGTGATTTGAA+GGG | 0.543515 | 3_3:-79275369 | Msa0475810:CDS |
| GATCTCTTTCCCAATCATCT+CGG | 0.545949 | 3_3:+79275326 | None:intergenic |
| AGATATGCATGCTATTGGAT+TGG | 0.548679 | 3_3:-79274511 | Msa0475810:three_prime_UTR |
| TGCTGATGAAATGGCGACGG+AGG | 0.555297 | 3_3:-79274742 | Msa0475810:CDS |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 3_3:-79275683 | Msa0475810:CDS |
| TGGGCACAACCAAAAGACTT+GGG | 0.557728 | 3_3:+79274403 | None:intergenic |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 3_3:-79276056 | Msa0475810:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 3_3:-79274775 | Msa0475810:CDS |
| CATCCATCAGAAACCTAAAA+CGG | 0.564666 | 3_3:-79277167 | Msa0475810:five_prime_UTR |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 3_3:+79277073 | None:intergenic |
| GCATGCTATTGGATTGGCCA+TGG | 0.572768 | 3_3:-79274505 | Msa0475810:three_prime_UTR |
| CATTTAACCTCATTGGAGGA+AGG | 0.575513 | 3_3:-79274361 | Msa0475810:three_prime_UTR |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 3_3:-79275649 | Msa0475810:intron |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 3_3:-79274783 | Msa0475810:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 3_3:+79276895 | None:intergenic |
| CAAGCACCAACAATTTCAGT+AGG | 0.588919 | 3_3:+79274717 | None:intergenic |
| GGGTGATTATTGATTTGGTG+TGG | 0.590317 | 3_3:-79274477 | Msa0475810:three_prime_UTR |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 3_3:+79275403 | None:intergenic |
| GCCTGCTGATGAAATGGCGA+CGG | 0.592955 | 3_3:-79274745 | Msa0475810:CDS |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 3_3:-79276009 | Msa0475810:CDS |
| CAGTAGTCTTGACATCCACA+TGG | 0.596992 | 3_3:+79275748 | None:intergenic |
| AACAGTGAAACCATGGCCGT+TGG | 0.599680 | 3_3:-79277089 | Msa0475810:exon |
| CATGCTATTGGATTGGCCAT+GGG | 0.601212 | 3_3:-79274504 | Msa0475810:three_prime_UTR |
| AACTCTTATTGAAGCCCATG+TGG | 0.605950 | 3_3:-79275763 | Msa0475810:CDS |
| GGCTCAGAGTACAGCAACAA+TGG | 0.609727 | 3_3:+79277142 | None:intergenic |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 3_3:-79275226 | Msa0475810:intron |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 3_3:-79275956 | Msa0475810:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 3_3:-79276862 | Msa0475810:CDS |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 3_3:-79277053 | Msa0475810:CDS |
| GAAAACTCCTTCCTCCAATG+AGG | 0.623219 | 3_3:+79274354 | None:intergenic |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 3_3:-79277076 | Msa0475810:CDS |
| CGCCGCAAACAGTGAAACCA+TGG | 0.625701 | 3_3:-79277096 | Msa0475810:exon |
| CAATGGGTAAATACTAGACG+TGG | 0.627663 | 3_3:+79275296 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 3_3:-79275731 | Msa0475810:CDS |
| AAGAGTGAGAGAGCTTGTGA+CGG | 0.642297 | 3_3:+79277121 | None:intergenic |
| AGCACAAGCCCAAGTAACAT+CGG | 0.644854 | 3_3:-79277205 | Msa0475810:five_prime_UTR |
| TACCCTGAGTACGAGACACG+AGG | 0.648922 | 3_3:+79276860 | None:intergenic |
| TTTGCATTGGATTTACCAAG+AGG | 0.649561 | 3_3:-79275704 | Msa0475810:CDS |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 3_3:-79274767 | Msa0475810:CDS |
| ACTTGGCTTACATAGAACTC+AGG | 0.670546 | 3_3:+79274615 | None:intergenic |
| TCTATGTAAGCCAAGTGCAG+CGG | 0.672422 | 3_3:-79274608 | Msa0475810:three_prime_UTR |
| GGGCACAACCAAAAGACTTG+GGG | 0.672707 | 3_3:+79274404 | None:intergenic |
| ACCCTGAGTACGAGACACGA+GGG | 0.678904 | 3_3:+79276861 | None:intergenic |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 3_3:-79275806 | Msa0475810:CDS |
| AGTAGTCTTGACATCCACAT+GGG | 0.706350 | 3_3:+79275749 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 3_3:-79277064 | Msa0475810:CDS |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 3_3:-79274790 | Msa0475810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAAAATTTAAA+AGG | + | chr3_3:79276580-79276599 | None:intergenic | 0.0% |
| !! | ATTGTAAAAAAATGAAAAAA+GGG | + | chr3_3:79274491-79274510 | None:intergenic | 10.0% |
| !! | AATTGTAAAAAAATGAAAAA+AGG | + | chr3_3:79274492-79274511 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTTTATTTACAG+GGG | - | chr3_3:79275662-79275681 | Msa0475810:CDS | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | + | chr3_3:79276338-79276357 | None:intergenic | 10.0% |
| !! | TTAGTATAAAAATTGTTTCA+TGG | + | chr3_3:79275223-79275242 | None:intergenic | 15.0% |
| !!! | AAAATCTTTTGACAAATTTT+TGG | - | chr3_3:79275563-79275582 | Msa0475810:intron | 15.0% |
| !!! | AAATCTTTTGACAAATTTTT+GGG | - | chr3_3:79275564-79275583 | Msa0475810:intron | 15.0% |
| !!! | AAATATATCTGAATTTTGTT+TGG | - | chr3_3:79276948-79276967 | Msa0475810:intron | 15.0% |
| !! | TAAAAAAATGAAAAAAGGGT+TGG | + | chr3_3:79274487-79274506 | None:intergenic | 20.0% |
| !! | TTGTATTCATATTCAATTCT+TGG | - | chr3_3:79274523-79274542 | Msa0475810:three_prime_UTR | 20.0% |
| !! | GATACATTTCATTGAATATT+TGG | - | chr3_3:79274780-79274799 | Msa0475810:CDS | 20.0% |
| !! | ATAAGCTATTTAAACAATCA+GGG | + | chr3_3:79274807-79274826 | None:intergenic | 20.0% |
| !! | TATAAGCTATTTAAACAATC+AGG | + | chr3_3:79274808-79274827 | None:intergenic | 20.0% |
| !! | TTATTTCCATAATAGCTTAT+AGG | + | chr3_3:79274929-79274948 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATATAGAAAA+TGG | - | chr3_3:79275409-79275428 | Msa0475810:intron | 20.0% |
| !!! | AATAGCTTTTAATAATCTGA+AGG | + | chr3_3:79276488-79276507 | None:intergenic | 20.0% |
| !! | GACTAATAAACATAAATAAC+AGG | + | chr3_3:79276839-79276858 | None:intergenic | 20.0% |
| ! | TTACAAAAAACAAGACAAAG+CGG | + | chr3_3:79274676-79274695 | None:intergenic | 25.0% |
| !!! | GATTTGATTTGTACATTGTT+AGG | - | chr3_3:79274704-79274723 | Msa0475810:exon | 25.0% |
| !! | GTTTTTCCTATAAGCTATTA+TGG | - | chr3_3:79274920-79274939 | Msa0475810:intron | 25.0% |
| ! | AAAAAAATGTTGTCAACTAG+CGG | + | chr3_3:79275186-79275205 | None:intergenic | 25.0% |
| ! | TTATACTAAATAACATACCG+TGG | - | chr3_3:79275234-79275253 | Msa0475810:CDS | 25.0% |
| ! | TATACTAAATAACATACCGT+GGG | - | chr3_3:79275235-79275254 | Msa0475810:CDS | 25.0% |
| ! | AAGGAATAACAAATATGTCT+TGG | - | chr3_3:79275341-79275360 | Msa0475810:CDS | 25.0% |
| !!! | AAATTTTTGGGTATGATATG+CGG | - | chr3_3:79275576-79275595 | Msa0475810:intron | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | + | chr3_3:79275604-79275623 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | - | chr3_3:79275608-79275627 | Msa0475810:intron | 25.0% |
| !!! | AATCACTTGTTTTGAACTTA+TGG | - | chr3_3:79276002-79276021 | Msa0475810:CDS | 25.0% |
| ! | ACTAATGTAACACCTTTATT+TGG | - | chr3_3:79276063-79276082 | Msa0475810:intron | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | + | chr3_3:79276264-79276283 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | - | chr3_3:79276368-79276387 | Msa0475810:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | + | chr3_3:79276437-79276456 | None:intergenic | 25.0% |
| !!! | TAATAATCTGAAGGTGTTTA+TGG | + | chr3_3:79276479-79276498 | None:intergenic | 25.0% |
| !!! | AATCAATGACACTTTTTAGA+TGG | + | chr3_3:79276658-79276677 | None:intergenic | 25.0% |
| !!! | AAAGTGTCATTGATTTGATT+TGG | - | chr3_3:79276663-79276682 | Msa0475810:intron | 25.0% |
| !! | TATACTTTTCAGCAATGAAT+GGG | + | chr3_3:79277114-79277133 | None:intergenic | 25.0% |
| ! | AAGTATACATTTAACCTCAT+TGG | - | chr3_3:79277127-79277146 | Msa0475810:five_prime_UTR | 25.0% |
| !!! | GATCATAGTTTGTTCAAATT+TGG | - | chr3_3:79277226-79277245 | Msa0475810:five_prime_UTR | 25.0% |
| ! | TTATGTTACCGATGTTACTT+GGG | + | chr3_3:79274301-79274320 | None:intergenic | 30.0% |
| TTTATGTTACCGATGTTACT+TGG | + | chr3_3:79274302-79274321 | None:intergenic | 30.0% | |
| ! | TTGTACATTGTTAGGTTGTT+TGG | - | chr3_3:79274712-79274731 | Msa0475810:exon | 30.0% |
| GTTACTTATGTTCGAAGATA+AGG | - | chr3_3:79275014-79275033 | Msa0475810:intron | 30.0% | |
| GAGTATACTTAGTGATGTTA+TGG | - | chr3_3:79275070-79275089 | Msa0475810:intron | 30.0% | |
| AAAAAATGTTGTCAACTAGC+GGG | + | chr3_3:79275185-79275204 | None:intergenic | 30.0% | |
| ! | AAATATGTCTTGGTCTTTCA+TGG | - | chr3_3:79275351-79275370 | Msa0475810:CDS | 30.0% |
| ! | AATATGTCTTGGTCTTTCAT+GGG | - | chr3_3:79275352-79275371 | Msa0475810:CDS | 30.0% |
| CTACTGATAATTACACATTG+AGG | - | chr3_3:79275764-79275783 | Msa0475810:CDS | 30.0% | |
| CAGATATTAGTGATTCAACA+TGG | - | chr3_3:79275917-79275936 | Msa0475810:intron | 30.0% | |
| ! | TGGTATCCAACACATATTTT+AGG | - | chr3_3:79275937-79275956 | Msa0475810:CDS | 30.0% |
| GTTCTACCTAAAATATGTGT+TGG | + | chr3_3:79275946-79275965 | None:intergenic | 30.0% | |
| AGCAGCATTTCATAAAAGAA+AGG | + | chr3_3:79275968-79275987 | None:intergenic | 30.0% | |
| !! | CTTTAAGGATCTTCACTTTT+CGG | + | chr3_3:79276239-79276258 | None:intergenic | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | + | chr3_3:79276265-79276284 | None:intergenic | 30.0% |
| GTTTGATCTTGGAAAATTGA+TGG | - | chr3_3:79276266-79276285 | Msa0475810:intron | 30.0% | |
| !! | GATTTGATTTGGTTGCTATT+TGG | - | chr3_3:79276674-79276693 | Msa0475810:intron | 30.0% |
| AAATCAGATATGCATGCTAT+TGG | - | chr3_3:79276979-79276998 | Msa0475810:intron | 30.0% | |
| ! | GTATACTTTTCAGCAATGAA+TGG | + | chr3_3:79277115-79277134 | None:intergenic | 30.0% |
| TATACATTTAACCTCATTGG+AGG | - | chr3_3:79277130-79277149 | Msa0475810:five_prime_UTR | 30.0% | |
| ! | GCTTGTGCTTTTCTTCTTTA+TGG | + | chr3_3:79274279-79274298 | None:intergenic | 35.0% |
| ! | TTAGGTTTCTGATGGATGTA+GGG | + | chr3_3:79274326-79274345 | None:intergenic | 35.0% |
| ! | TTTAGGTTTCTGATGGATGT+AGG | + | chr3_3:79274327-79274346 | None:intergenic | 35.0% |
| CATCCATCAGAAACCTAAAA+CGG | - | chr3_3:79274328-79274347 | Msa0475810:three_prime_UTR | 35.0% | |
| GATATCATACCAATCCTTCT+TGG | + | chr3_3:79274574-79274593 | None:intergenic | 35.0% | |
| ! | GAAGGATTGGTATGATATCA+AGG | - | chr3_3:79274575-79274594 | Msa0475810:three_prime_UTR | 35.0% |
| ! | CATTGTTAGGTTGTTTGGTT+TGG | - | chr3_3:79274717-79274736 | Msa0475810:CDS | 35.0% |
| TAAGCTGCAAAAACATCTCA+TGG | - | chr3_3:79274946-79274965 | Msa0475810:intron | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | - | chr3_3:79275037-79275056 | Msa0475810:intron | 35.0% | |
| TGTGTTAAATAGCAGCTATG+CGG | + | chr3_3:79275307-79275326 | None:intergenic | 35.0% | |
| ! | ATAGCTGCTATTTAACACAC+TGG | - | chr3_3:79275308-79275327 | Msa0475810:CDS | 35.0% |
| !!! | ACACACTGGTTTTAGTTACA+AGG | - | chr3_3:79275322-79275341 | Msa0475810:CDS | 35.0% |
| ! | ATATGTCTTGGTCTTTCATG+GGG | - | chr3_3:79275353-79275372 | Msa0475810:CDS | 35.0% |
| ! | GATGCTGAAAGTTGATCAAT+TGG | - | chr3_3:79275375-79275394 | Msa0475810:CDS | 35.0% |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | - | chr3_3:79275471-79275490 | Msa0475810:intron | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | - | chr3_3:79275485-79275504 | Msa0475810:intron | 35.0% |
| AACATGCATTCAGGAAGATT+AGG | - | chr3_3:79275515-79275534 | Msa0475810:intron | 35.0% | |
| ATTTCACAACTGACAAACTG+AGG | - | chr3_3:79275689-79275708 | Msa0475810:CDS | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | - | chr3_3:79275778-79275797 | Msa0475810:CDS | 35.0% |
| TTTGCATTGGATTTACCAAG+AGG | - | chr3_3:79275791-79275810 | Msa0475810:CDS | 35.0% | |
| ACAATCTAGTCAGATTAGAC+AGG | - | chr3_3:79275846-79275865 | Msa0475810:intron | 35.0% | |
| TCAAATCACAAGATGATGCT+TGG | + | chr3_3:79276125-79276144 | None:intergenic | 35.0% | |
| AGCATCATCTTGTGATTTGA+AGG | - | chr3_3:79276125-79276144 | Msa0475810:intron | 35.0% | |
| GCATCATCTTGTGATTTGAA+GGG | - | chr3_3:79276126-79276145 | Msa0475810:intron | 35.0% | |
| ATCTTGTGATTTGAAGGGAT+TGG | - | chr3_3:79276131-79276150 | Msa0475810:intron | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | - | chr3_3:79276159-79276178 | Msa0475810:intron | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | - | chr3_3:79276160-79276179 | Msa0475810:intron | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | - | chr3_3:79276269-79276288 | Msa0475810:intron | 35.0% | |
| ! | AACAACCAAAGTTTTTGTGC+AGG | + | chr3_3:79276364-79276383 | None:intergenic | 35.0% |
| CTTTCCAAAAGCTCTCTATT+CGG | - | chr3_3:79276448-79276467 | Msa0475810:intron | 35.0% | |
| ! | GTTTTCACACAAGCACTTAT+TGG | + | chr3_3:79276541-79276560 | None:intergenic | 35.0% |
| TCAAGCTAAAAGAGAACAGA+AGG | + | chr3_3:79276604-79276623 | None:intergenic | 35.0% | |
| ! | GAAATTGTTGGTGCTTGATT+TGG | - | chr3_3:79276784-79276803 | Msa0475810:intron | 35.0% |
| AGATATGCATGCTATTGGAT+TGG | - | chr3_3:79276984-79277003 | Msa0475810:intron | 35.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | - | chr3_3:79274429-79274448 | Msa0475810:three_prime_UTR | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | - | chr3_3:79274430-79274449 | Msa0475810:three_prime_UTR | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | - | chr3_3:79274562-79274581 | Msa0475810:three_prime_UTR | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | + | chr3_3:79274567-79274586 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | + | chr3_3:79274603-79274622 | None:intergenic | 40.0% | |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | - | chr3_3:79274606-79274625 | Msa0475810:three_prime_UTR | 40.0% |
| CACTAAGTATACTCAGTCCA+AGG | + | chr3_3:79275064-79275083 | None:intergenic | 40.0% | |
| GTGTTGTCAATCTTGTAGTG+CGG | - | chr3_3:79275115-79275134 | Msa0475810:intron | 40.0% | |
| TGTTGTCAATCTTGTAGTGC+GGG | - | chr3_3:79275116-79275135 | Msa0475810:intron | 40.0% | |
| TACAAACCACTATTGTCCCA+CGG | + | chr3_3:79275254-79275273 | None:intergenic | 40.0% | |
| GAATGACAGATTGCTTCAGA+TGG | - | chr3_3:79275439-79275458 | Msa0475810:intron | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | - | chr3_3:79275462-79275481 | Msa0475810:intron | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | - | chr3_3:79275484-79275503 | Msa0475810:intron | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | - | chr3_3:79275486-79275505 | Msa0475810:intron | 40.0% |
| TTGAGAGCTGAAGATGTTCA+AGG | - | chr3_3:79275538-79275557 | Msa0475810:intron | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | - | chr3_3:79275539-79275558 | Msa0475810:intron | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | - | chr3_3:79275696-79275715 | Msa0475810:CDS | 40.0% | |
| AACTCTTATTGAAGCCCATG+TGG | - | chr3_3:79275732-79275751 | Msa0475810:CDS | 40.0% | |
| ! | AGTAGTCTTGACATCCACAT+GGG | + | chr3_3:79275749-79275768 | None:intergenic | 40.0% |
| CTACGGATCTGACCAAATAA+AGG | + | chr3_3:79276078-79276097 | None:intergenic | 40.0% | |
| ! | CTTTATTTGGTCAGATCCGT+AGG | - | chr3_3:79276076-79276095 | Msa0475810:intron | 40.0% |
| TGATCTCAACCATCTTCCTA+CGG | + | chr3_3:79276095-79276114 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+AGG | + | chr3_3:79276158-79276177 | None:intergenic | 40.0% | |
| ATCTCTTTCCCAATCATCTC+GGG | + | chr3_3:79276171-79276190 | None:intergenic | 40.0% | |
| GATCTCTTTCCCAATCATCT+CGG | + | chr3_3:79276172-79276191 | None:intergenic | 40.0% | |
| CAATGGGTAAATACTAGACG+TGG | + | chr3_3:79276202-79276221 | None:intergenic | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | + | chr3_3:79276254-79276273 | None:intergenic | 40.0% | |
| AAAGCTCCCAAGTTTGATCT+TGG | - | chr3_3:79276255-79276274 | Msa0475810:intron | 40.0% | |
| TCGTTCCTGCACAAAAACTT+TGG | - | chr3_3:79276356-79276375 | Msa0475810:intron | 40.0% | |
| ! | GAAACCGAATAGAGAGCTTT+TGG | + | chr3_3:79276455-79276474 | None:intergenic | 40.0% |
| ATTTGGTCCTTGTAGGTTCA+TGG | - | chr3_3:79276691-79276710 | Msa0475810:intron | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | + | chr3_3:79276701-79276720 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | - | chr3_3:79276772-79276791 | Msa0475810:intron | 40.0% | |
| CAAGCACCAACAATTTCAGT+AGG | + | chr3_3:79276781-79276800 | None:intergenic | 40.0% | |
| ACTTGGCTTACATAGAACTC+AGG | + | chr3_3:79276883-79276902 | None:intergenic | 40.0% | |
| ! | GAGCTGGGTGATTATTGATT+TGG | - | chr3_3:79277013-79277032 | Msa0475810:intron | 40.0% |
| !! | GGGTGATTATTGATTTGGTG+TGG | - | chr3_3:79277018-79277037 | Msa0475810:intron | 40.0% |
| CATTTAACCTCATTGGAGGA+AGG | - | chr3_3:79277134-79277153 | Msa0475810:five_prime_UTR | 40.0% | |
| AGCACAAGCCCAAGTAACAT+CGG | - | chr3_3:79274290-79274309 | Msa0475810:three_prime_UTR | 45.0% | |
| !!! | GCACCGTTTTAGGTTTCTGA+TGG | + | chr3_3:79274334-79274353 | None:intergenic | 45.0% |
| ! | AGCAACAATGGCACCGTTTT+AGG | + | chr3_3:79274344-79274363 | None:intergenic | 45.0% |
| AAGAGTGAGAGAGCTTGTGA+CGG | + | chr3_3:79274377-79274396 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | + | chr3_3:79274425-79274444 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | - | chr3_3:79274431-79274450 | Msa0475810:three_prime_UTR | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | - | chr3_3:79274442-79274461 | Msa0475810:three_prime_UTR | 45.0% |
| TGCTGATCCATTTGCCAAGA+AGG | - | chr3_3:79274557-79274576 | Msa0475810:three_prime_UTR | 45.0% | |
| ! | TTGTCAACTAGCGGGTAAAG+TGG | + | chr3_3:79275177-79275196 | None:intergenic | 45.0% |
| AACATACCGTGGGACAATAG+TGG | - | chr3_3:79275245-79275264 | Msa0475810:CDS | 45.0% | |
| ! | CAGTAGTCTTGACATCCACA+TGG | + | chr3_3:79275750-79275769 | None:intergenic | 45.0% |
| CTGACTAGATTGTGCATAGC+AGG | + | chr3_3:79275839-79275858 | None:intergenic | 45.0% | |
| GGATGAACACGTTCTGCAAT+GGG | + | chr3_3:79276218-79276237 | None:intergenic | 45.0% | |
| !! | GGTTGCTATTTGGTCCTTGT+AGG | - | chr3_3:79276684-79276703 | Msa0475810:intron | 45.0% |
| GGTTCATGGAGATTACTCTG+AGG | - | chr3_3:79276705-79276724 | Msa0475810:intron | 45.0% | |
| ! | GGAGATTACTCTGAGGATGT+TGG | - | chr3_3:79276712-79276731 | Msa0475810:intron | 45.0% |
| ATGTTGGCACAAAGGTAGAG+AGG | - | chr3_3:79276728-79276747 | Msa0475810:intron | 45.0% | |
| TCTATGTAAGCCAAGTGCAG+CGG | - | chr3_3:79276887-79276906 | Msa0475810:CDS | 45.0% | |
| CAAAACAAAACCGCTGCACT+TGG | + | chr3_3:79276900-79276919 | None:intergenic | 45.0% | |
| !! | CATGCTATTGGATTGGCCAT+GGG | - | chr3_3:79276991-79277010 | Msa0475810:intron | 45.0% |
| ! | GTTTCTCACCCCAAGTCTTT+TGG | - | chr3_3:79277083-79277102 | Msa0475810:exon | 45.0% |
| TGGGCACAACCAAAAGACTT+GGG | + | chr3_3:79277095-79277114 | None:intergenic | 45.0% | |
| ATGGGCACAACCAAAAGACT+TGG | + | chr3_3:79277096-79277115 | None:intergenic | 45.0% | |
| GAAAACTCCTTCCTCCAATG+AGG | + | chr3_3:79277144-79277163 | None:intergenic | 45.0% | |
| !!! | TATTTTTATTTTTTATTTAC+AGG | - | chr3_3:79275660-79275679 | Msa0475810:CDS | 5.0% |
| !!! | ATTTTTATTTTTTATTTACA+GGG | - | chr3_3:79275661-79275680 | Msa0475810:CDS | 5.0% |
| !! | ATATTATGAAAATAAATATT+GGG | + | chr3_3:79276337-79276356 | None:intergenic | 5.0% |
| GGCTCAGAGTACAGCAACAA+TGG | + | chr3_3:79274356-79274375 | None:intergenic | 50.0% | |
| GGCCATGGTTTCACTGTTTG+CGG | + | chr3_3:79274404-79274423 | None:intergenic | 50.0% | |
| AACAGTGAAACCATGGCCGT+TGG | - | chr3_3:79274406-79274425 | Msa0475810:three_prime_UTR | 50.0% | |
| CTTGTTCTTACCAACGGCCA+TGG | + | chr3_3:79274419-79274438 | None:intergenic | 50.0% | |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | - | chr3_3:79274419-79274438 | Msa0475810:three_prime_UTR | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | - | chr3_3:79274439-79274458 | Msa0475810:three_prime_UTR | 50.0% |
| ! | CAAGGCTCCTTCAGTTTTCC+AGG | - | chr3_3:79274593-79274612 | Msa0475810:three_prime_UTR | 50.0% |
| TCTTGCCGACATTCTTCACC+TGG | + | chr3_3:79274614-79274633 | None:intergenic | 50.0% | |
| ! | GTCTCGTACTCAGGGTACTA+AGG | - | chr3_3:79274641-79274660 | Msa0475810:three_prime_UTR | 50.0% |
| TGCCAATCCAAACAGGTCCT+TGG | - | chr3_3:79275044-79275063 | Msa0475810:intron | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | + | chr3_3:79275049-79275068 | None:intergenic | 50.0% | |
| ACTCAGTCCAAGGACCTGTT+TGG | + | chr3_3:79275054-79275073 | None:intergenic | 50.0% | |
| ATGCGGCGCTATATCGCTAT+CGG | + | chr3_3:79275290-79275309 | None:intergenic | 50.0% | |
| GGGACGAAGAACATGCATTC+AGG | - | chr3_3:79275506-79275525 | Msa0475810:intron | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | - | chr3_3:79275707-79275726 | Msa0475810:CDS | 50.0% | |
| TACCAAGAGGAGAGCTAACC+AGG | - | chr3_3:79275804-79275823 | Msa0475810:CDS | 50.0% | |
| TGGTCAGATCCGTAGGAAGA+TGG | - | chr3_3:79276083-79276102 | Msa0475810:intron | 50.0% | |
| CGGATGAACACGTTCTGCAA+TGG | + | chr3_3:79276219-79276238 | None:intergenic | 50.0% | |
| ! | CTCTGAGGATGTTGGCACAA+AGG | - | chr3_3:79276720-79276739 | Msa0475810:intron | 50.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | - | chr3_3:79276744-79276763 | Msa0475810:intron | 50.0% | |
| !! | GCATGCTATTGGATTGGCCA+TGG | - | chr3_3:79276990-79277009 | Msa0475810:intron | 50.0% |
| CAATAATCACCCAGCTCCCA+TGG | + | chr3_3:79277010-79277029 | None:intergenic | 50.0% | |
| GGGCACAACCAAAAGACTTG+GGG | + | chr3_3:79277094-79277113 | None:intergenic | 50.0% | |
| CGCCGCAAACAGTGAAACCA+TGG | - | chr3_3:79274399-79274418 | Msa0475810:three_prime_UTR | 55.0% | |
| ACCCTCGTGTCTCGTACTCA+GGG | - | chr3_3:79274633-79274652 | Msa0475810:three_prime_UTR | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | + | chr3_3:79274637-79274656 | None:intergenic | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | + | chr3_3:79274638-79274657 | None:intergenic | 55.0% | |
| TGCGGCGCTATATCGCTATC+GGG | + | chr3_3:79275289-79275308 | None:intergenic | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | + | chr3_3:79275809-79275828 | None:intergenic | 55.0% |
| GGAGAGCTAACCAGGTGAAG+AGG | - | chr3_3:79275812-79275831 | Msa0475810:CDS | 55.0% | |
| CATAGCAGGTCCTCTTCACC+TGG | + | chr3_3:79275825-79275844 | None:intergenic | 55.0% | |
| GCCTGCTGATGAAATGGCGA+CGG | - | chr3_3:79276750-79276769 | Msa0475810:intron | 55.0% | |
| TCCGTCGCCATTTCATCAGC+AGG | + | chr3_3:79276754-79276773 | None:intergenic | 55.0% | |
| TGCTGATGAAATGGCGACGG+AGG | - | chr3_3:79276753-79276772 | Msa0475810:intron | 55.0% | |
| !! | ATTGGATTGGCCATGGGAGC+TGG | - | chr3_3:79276997-79277016 | Msa0475810:intron | 55.0% |
| !! | TTGGATTGGCCATGGGAGCT+GGG | - | chr3_3:79276998-79277017 | Msa0475810:intron | 55.0% |
| GACCCTCGTGTCTCGTACTC+AGG | - | chr3_3:79274632-79274651 | Msa0475810:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79274256 | 79277261 | 79274256 | ID=Msa0475810;Name=Msa0475810 |
| chr3_3 | mRNA | 79274256 | 79277261 | 79274256 | ID=Msa0475810-mRNA-1;Parent=Msa0475810;Name=Msa0475810-mRNA-1;_AED=0.06;_eAED=0.06;_QI=162|1|1|1|1|1|6|460|261 |
| chr3_3 | exon | 79274256 | 79274811 | 79274256 | ID=Msa0475810-mRNA-1:exon:21509;Parent=Msa0475810-mRNA-1 |
| chr3_3 | exon | 79275227 | 79275427 | 79275227 | ID=Msa0475810-mRNA-1:exon:21508;Parent=Msa0475810-mRNA-1 |
| chr3_3 | exon | 79275650 | 79275835 | 79275650 | ID=Msa0475810-mRNA-1:exon:21507;Parent=Msa0475810-mRNA-1 |
| chr3_3 | exon | 79275932 | 79276069 | 79275932 | ID=Msa0475810-mRNA-1:exon:21506;Parent=Msa0475810-mRNA-1 |
| chr3_3 | exon | 79276855 | 79276960 | 79276855 | ID=Msa0475810-mRNA-1:exon:21505;Parent=Msa0475810-mRNA-1 |
| chr3_3 | exon | 79277041 | 79277261 | 79277041 | ID=Msa0475810-mRNA-1:exon:21504;Parent=Msa0475810-mRNA-1 |
| chr3_3 | five_prime_UTR | 79277100 | 79277261 | 79277100 | ID=Msa0475810-mRNA-1:five_prime_utr;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79277041 | 79277099 | 79277041 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79276855 | 79276960 | 79276855 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79275932 | 79276069 | 79275932 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79275650 | 79275835 | 79275650 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79275227 | 79275427 | 79275227 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | CDS | 79274716 | 79274811 | 79274716 | ID=Msa0475810-mRNA-1:cds;Parent=Msa0475810-mRNA-1 |
| chr3_3 | three_prime_UTR | 79274256 | 79274715 | 79274256 | ID=Msa0475810-mRNA-1:three_prime_utr;Parent=Msa0475810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
