AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799830 MtrunA17_Chr5g0405281 100.000 258 0 0 1 258 1 258 0.0 527
Msa0799830 MtrunA17_Chr7g0247311 95.736 258 11 0 1 258 1 258 0.0 508
Msa0799830 MtrunA17_Chr3g0094604 33.333 186 112 4 29 214 49 222 1.45e-23 96.3
Msa0799830 MtrunA17_CPg0492514 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0799830 MtrunA17_Chr3g0090924 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0799830 MtrunA17_Chr4g0015984 33.333 186 112 4 29 214 49 222 1.75e-23 95.9
Msa0799830 MtrunA17_Chr4g0017184 33.333 186 112 4 29 214 56 229 9.52e-23 94.0
Msa0799830 MtrunA17_Chr2g0283311 39.316 117 65 3 98 214 51 161 4.42e-18 80.1
Msa0799830 MtrunA17_Chr4g0024444 29.078 141 93 2 29 169 49 182 7.58e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799830 AT4G36130.1 92.636 258 19 0 1 258 1 258 1.25e-180 496
Msa0799830 AT2G18020.1 91.860 258 21 0 1 258 1 258 7.56e-175 482
Msa0799830 AT3G51190.1 84.519 239 36 1 1 238 1 239 5.84e-152 424
Msa0799830 ATCG01310.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0799830 ATCG00830.1 32.632 190 108 4 29 214 60 233 2.27e-24 99.0
Msa0799830 AT2G44065.3 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0799830 AT2G44065.1 36.691 139 80 3 97 234 58 189 7.53e-18 80.1
Msa0799830 AT2G44065.2 36.691 139 80 3 97 234 58 189 7.53e-18 80.1

Find 112 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATGCTTACCACAAATTT+AGG 0.139039 5_3:-13230688 Msa0799830:CDS
TTCTGTTTCTTATATCTAAA+AGG 0.141313 5_3:+13232180 None:intergenic
GCGAGATGGGTAGGGTTATC+AGG 0.218220 5_3:-13232380 Msa0799830:exon
GACTATTTGAAGAGATTCTT+AGG 0.233323 5_3:-13230451 Msa0799830:three_prime_UTR
ACCACCGTGCGGCGATGATA+TGG 0.271441 5_3:+13232426 None:intergenic
AAAGAATACCCAAGTAGTTT+TGG 0.279478 5_3:+13230378 None:intergenic
GCTAGTGGTGCACCGCGACC+TGG 0.291779 5_3:+13232222 None:intergenic
TTCATAGTTTGCCTTCGTTC+CGG 0.294468 5_3:-13230279 Msa0799830:three_prime_UTR
TCATAGTTTGCCTTCGTTCC+GGG 0.320605 5_3:-13230278 Msa0799830:three_prime_UTR
TTCAGAGAAGTTAGGGTTTG+AGG 0.339397 5_3:+13232456 None:intergenic
GCAGGATTCATACCTTGTTC+AGG 0.343927 5_3:-13230155 Msa0799830:three_prime_UTR
TAATGCTTACCACAAATTTA+GGG 0.348170 5_3:-13230687 Msa0799830:CDS
AACCTAGAGGTATCATTATC+AGG 0.354338 5_3:+13231955 None:intergenic
GGCCTTTGCGATGGTGGGTG+TGG 0.359733 5_3:+13232322 None:intergenic
AGCTGCTTCTGCTGCTGCTA+AGG 0.362731 5_3:-13230489 Msa0799830:CDS
TCCTCTTCACCCTAAATTTG+TGG 0.369145 5_3:+13230678 None:intergenic
CGTTTCCGCAGTCTCGATTT+CGG 0.389930 5_3:-13232294 Msa0799830:CDS
GAAATGAGTTCAGAGAAGTT+AGG 0.390313 5_3:+13232448 None:intergenic
TGAAATTTATTTGTTTAGGT+TGG 0.391477 5_3:-13230194 Msa0799830:three_prime_UTR
GCTATGATTGGGCAAGTTGC+AGG 0.391634 5_3:-13230746 Msa0799830:CDS
CTAAGAGAACTGGTCGTCTC+AGG 0.393643 5_3:-13230517 Msa0799830:CDS
AAATGAGTTCAGAGAAGTTA+GGG 0.407150 5_3:+13232449 None:intergenic
TCATATAAATATGGGGCAAA+AGG 0.412074 5_3:+13230349 None:intergenic
TTAGGGTGAAGAGGAATTGC+TGG 0.413541 5_3:-13230670 Msa0799830:CDS
TTTCGTTCACTACTCCTTTG+AGG 0.415458 5_3:+13232256 None:intergenic
CTGGACAGTTTATTTATTGT+GGG 0.419100 5_3:-13232125 Msa0799830:CDS
GCCTTTGCGATGGTGGGTGT+GGG 0.420149 5_3:+13232323 None:intergenic
TTACAAATAACCGCACCTTC+AGG 0.420706 5_3:+13232054 None:intergenic
CCTCCATGAGGATGTTCAAC+TGG 0.422258 5_3:+13230620 None:intergenic
GTTGTGAAATTTATTTGTTT+AGG 0.426123 5_3:-13230198 Msa0799830:three_prime_UTR
GACAGGATTAAGCTACCATC+AGG 0.430549 5_3:-13230800 Msa0799830:intron
TCTGTTTCTTATATCTAAAA+GGG 0.435806 5_3:+13232181 None:intergenic
GTTAGGCGTGATGCTCCTCC+TGG 0.436286 5_3:-13230563 Msa0799830:CDS
CTCATTGCTGCTAAGAGAAC+TGG 0.437152 5_3:-13230527 Msa0799830:CDS
TCGAGACTGCGGAAACGTGC+TGG 0.440209 5_3:+13232300 None:intergenic
ACTGGACAGTTTATTTATTG+TGG 0.444957 5_3:-13232126 Msa0799830:CDS
AGAGTCGTAGGTTTAGTTTC+CGG 0.445585 5_3:-13232402 Msa0799830:five_prime_UTR
AACTGAGAAGCCAATGCTTA+AGG 0.445753 5_3:-13230714 Msa0799830:CDS
GGAGGTAACCACCAGCATAT+TGG 0.446084 5_3:-13230599 Msa0799830:CDS
TTGTCTGTTCCAAAACTACT+TGG 0.449180 5_3:-13230387 Msa0799830:three_prime_UTR
AGGTTTAGTTTCCGGCGAGA+TGG 0.453078 5_3:-13232394 Msa0799830:exon
CTCGATTTCGGTGAAAGAAA+CGG 0.463830 5_3:-13232282 Msa0799830:CDS
GCATTACCAGCCTTAAGCAT+TGG 0.465748 5_3:+13230704 None:intergenic
ACTATTTGAAGAGATTCTTA+GGG 0.466482 5_3:-13230450 Msa0799830:three_prime_UTR
GGTTTAGTTTCCGGCGAGAT+GGG 0.469108 5_3:-13232393 Msa0799830:exon
AGTGAGTGCAGAGCTATGAT+TGG 0.480414 5_3:-13230758 Msa0799830:CDS
TGCTGGGCCTTTGCGATGGT+GGG 0.484311 5_3:+13232317 None:intergenic
TAGTTTCCGGCGAGATGGGT+AGG 0.490187 5_3:-13232389 Msa0799830:exon
TTCATACCTTGTTCAGGGAG+TGG 0.490403 5_3:-13230149 Msa0799830:three_prime_UTR
ATAGTACTTCTGTAGTGAAA+AGG 0.490501 5_3:-13230099 Msa0799830:three_prime_UTR
CGAGACTGCGGAAACGTGCT+GGG 0.490564 5_3:+13232301 None:intergenic
TTGGACATGCTAGTACTGTT+AGG 0.490772 5_3:-13230580 Msa0799830:CDS
CTAGTGGTGCACCGCGACCT+GGG 0.492115 5_3:+13232223 None:intergenic
GTGCTGGGCCTTTGCGATGG+TGG 0.492579 5_3:+13232316 None:intergenic
ATCATAGCTCTGCACTCACT+TGG 0.492967 5_3:+13230761 None:intergenic
CAGGATTCATACCTTGTTCA+GGG 0.494458 5_3:-13230154 Msa0799830:three_prime_UTR
ACAATCTTCTTTGCCCCTGA+TGG 0.501695 5_3:+13230785 None:intergenic
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 5_3:-13230551 Msa0799830:CDS
ATCATTCACGACCCAGGTCG+CGG 0.520973 5_3:-13232234 Msa0799830:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 5_3:+13230545 None:intergenic
GAAGAGGAATTGCTGGCCTA+AGG 0.522177 5_3:-13230663 Msa0799830:CDS
AATTGCTGGCCTAAGGTTCG+TGG 0.527466 5_3:-13230656 Msa0799830:CDS
ATTGGGCAAGTTGCAGGTGG+AGG 0.539757 5_3:-13230740 Msa0799830:CDS
GTGAGTGCAGAGCTATGATT+GGG 0.540155 5_3:-13230757 Msa0799830:CDS
TACTAGCATGTCCAATATGC+TGG 0.543123 5_3:+13230588 None:intergenic
GTGGGTGTGGGACTTGAAAA+CGG 0.548294 5_3:+13232335 None:intergenic
GAGAAGCCAATGCTTAAGGC+TGG 0.549710 5_3:-13230710 Msa0799830:CDS
TCTGTAGTGAAAAGGTTACA+AGG 0.550887 5_3:-13230091 Msa0799830:three_prime_UTR
AGTTTCCGGCGAGATGGGTA+GGG 0.550945 5_3:-13232388 Msa0799830:exon
TGATGCTCCTCCTGGACAGA+AGG 0.551156 5_3:-13230555 Msa0799830:CDS
ACCACAAATTTAGGGTGAAG+AGG 0.551702 5_3:-13230679 Msa0799830:CDS
TCTTATATCTAAAAGGGTGT+CGG 0.552820 5_3:+13232187 None:intergenic
AGGGCACAACGTAAAGGAGC+AGG 0.552983 5_3:-13232360 Msa0799830:CDS
CGAGATGGGTAGGGTTATCA+GGG 0.554090 5_3:-13232379 Msa0799830:exon
GAAAGAAACGGTTACCTCAA+AGG 0.558738 5_3:-13232270 Msa0799830:CDS
GTTATCAGGGCACAACGTAA+AGG 0.562139 5_3:-13232366 Msa0799830:CDS
CCTTCAGGAATCATCCTCAA+TGG 0.568035 5_3:+13232069 None:intergenic
AACGAAATCATTCACGACCC+AGG 0.570840 5_3:-13232240 Msa0799830:CDS
TAAGAGAACTGGTCGTCTCA+GGG 0.573235 5_3:-13230516 Msa0799830:CDS
TGTCTGTTCCAAAACTACTT+GGG 0.573527 5_3:-13230386 Msa0799830:three_prime_UTR
TCGCGGTGCACCACTAGCTA+AGG 0.577052 5_3:-13232217 Msa0799830:CDS
CGCACGGTGGTTAGAGTCGT+AGG 0.577340 5_3:-13232414 Msa0799830:five_prime_UTR
AATCCAGTTGAACATCCTCA+TGG 0.581222 5_3:-13230623 Msa0799830:CDS
AACGTGCTGGGCCTTTGCGA+TGG 0.587555 5_3:+13232313 None:intergenic
GCTGCTGAGGGACTTTACAC+TGG 0.588705 5_3:-13232144 Msa0799830:CDS
TGTAATGTTGAACATCATGT+TGG 0.589500 5_3:-13232036 Msa0799830:CDS
CTGGCCTAAGGTTCGTGGTG+TGG 0.593495 5_3:-13230651 Msa0799830:CDS
ATAGCCACACCACGAACCTT+AGG 0.594313 5_3:+13230647 None:intergenic
TCCCACACCCACCATCGCAA+AGG 0.598343 5_3:-13232324 Msa0799830:CDS
CAGTAGAAATAGATGAAACC+CGG 0.602486 5_3:+13230260 None:intergenic
CCATTGAGGATGATTCCTGA+AGG 0.603950 5_3:-13232069 Msa0799830:CDS
ACAGGATTAAGCTACCATCA+GGG 0.606815 5_3:-13230799 Msa0799830:intron
GTTGAACATCCTCATGGAGG+AGG 0.607255 5_3:-13230617 Msa0799830:CDS
AAACAACCACTCCCTGAACA+AGG 0.624339 5_3:+13230143 None:intergenic
ATCCTGATAATGATACCTCT+AGG 0.627712 5_3:-13231957 Msa0799830:intron
ATGATTGGGCAAGTTGCAGG+TGG 0.627869 5_3:-13230743 Msa0799830:CDS
ATAGATGAAACCCGGAACGA+AGG 0.629870 5_3:+13230268 None:intergenic
CTGTAGTGAAAAGGTTACAA+GGG 0.630288 5_3:-13230090 Msa0799830:three_prime_UTR
GAGGATGATTCCTGAAGGTG+CGG 0.634290 5_3:-13232064 Msa0799830:CDS
CAGGATTAAGCTACCATCAG+GGG 0.634909 5_3:-13230798 Msa0799830:CDS
GAACATCATGTTGGTGATCG+TGG 0.646474 5_3:-13232027 Msa0799830:CDS
GATAACCCTACCCATCTCGC+CGG 0.648671 5_3:+13232383 None:intergenic
TCCATATCATCGCCGCACGG+TGG 0.651259 5_3:-13232427 Msa0799830:five_prime_UTR
TTTCACCGAAATCGAGACTG+CGG 0.661724 5_3:+13232289 None:intergenic
TAGCATGTCCAATATGCTGG+TGG 0.670638 5_3:+13230591 None:intergenic
CGGAATGTGACCTTAGCTAG+TGG 0.672073 5_3:+13232207 None:intergenic
AAGAGAACTGGTCGTCTCAG+GGG 0.684178 5_3:-13230515 Msa0799830:CDS
TGGTGGTTACCTCCTCCATG+AGG 0.690890 5_3:+13230608 None:intergenic
AGACCAACCTTCTGTCCAGG+AGG 0.695738 5_3:+13230548 None:intergenic
ATTTCCATATCATCGCCGCA+CGG 0.725893 5_3:-13232430 Msa0799830:five_prime_UTR
CCAGTTGAACATCCTCATGG+AGG 0.726090 5_3:-13230620 Msa0799830:CDS
CTACGACTCTAACCACCGTG+CGG 0.804232 5_3:+13232415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAATATGTTAATTAAAAA+TGG + chr5_3:13230618-13230637 None:intergenic 10.0%
!! AAAAATTTCATATAAATATG+GGG + chr5_3:13232176-13232195 None:intergenic 10.0%
!! TACAATATGTTAATTAAAAA+TGG + chr5_3:13230618-13230637 None:intergenic 10.0%
!! AAAAATTTCATATAAATATG+GGG + chr5_3:13232176-13232195 None:intergenic 10.0%
!! AAATATACAAATATGATTTG+TGG - chr5_3:13230671-13230690 Msa0799830:CDS 15.0%
!! TAATACAACTAATTTCTAAA+TGG + chr5_3:13230751-13230770 None:intergenic 15.0%
!! TATAAAAACTTGAATTATGT+GGG - chr5_3:13231543-13231562 Msa0799830:intron 15.0%
!!! ATGAAATTTTTAAATGACAA+TGG - chr5_3:13232185-13232204 Msa0799830:CDS 15.0%
!! AAATATACAAATATGATTTG+TGG - chr5_3:13230671-13230690 Msa0799830:CDS 15.0%
!! TAATACAACTAATTTCTAAA+TGG + chr5_3:13230751-13230770 None:intergenic 15.0%
!! TATAAAAACTTGAATTATGT+GGG - chr5_3:13231543-13231562 Msa0799830:intron 15.0%
!!! ATGAAATTTTTAAATGACAA+TGG - chr5_3:13232185-13232204 Msa0799830:CDS 15.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_3:13230337-13230356 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_3:13230338-13230357 None:intergenic 20.0%
!! TAACACTTATAGTAGAAAAA+TGG - chr5_3:13230862-13230881 Msa0799830:intron 20.0%
!! AGCTTAAAAAATTAATGATG+TGG - chr5_3:13231253-13231272 Msa0799830:intron 20.0%
!! GTATAAAAACTTGAATTATG+TGG - chr5_3:13231542-13231561 Msa0799830:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_3:13231676-13231695 Msa0799830:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_3:13231677-13231696 Msa0799830:intron 20.0%
!! GTTGTGAAATTTATTTGTTT+AGG - chr5_3:13232317-13232336 Msa0799830:CDS 20.0%
!! TGAAATTTATTTGTTTAGGT+TGG - chr5_3:13232321-13232340 Msa0799830:CDS 20.0%
!!! TCTGTTTCTTATATCTAAAA+GGG + chr5_3:13230337-13230356 None:intergenic 20.0%
!!! TTCTGTTTCTTATATCTAAA+AGG + chr5_3:13230338-13230357 None:intergenic 20.0%
!! TAACACTTATAGTAGAAAAA+TGG - chr5_3:13230862-13230881 Msa0799830:intron 20.0%
!! AGCTTAAAAAATTAATGATG+TGG - chr5_3:13231253-13231272 Msa0799830:intron 20.0%
!! GTATAAAAACTTGAATTATG+TGG - chr5_3:13231542-13231561 Msa0799830:intron 20.0%
!!! TATTTAACTTTTACTGATGA+TGG - chr5_3:13231676-13231695 Msa0799830:intron 20.0%
!!! ATTTAACTTTTACTGATGAT+GGG - chr5_3:13231677-13231696 Msa0799830:intron 20.0%
!! GTTGTGAAATTTATTTGTTT+AGG - chr5_3:13232317-13232336 Msa0799830:CDS 20.0%
!! TGAAATTTATTTGTTTAGGT+TGG - chr5_3:13232321-13232340 Msa0799830:CDS 20.0%
! TAGAATTAGAAATGACAAGT+TGG - chr5_3:13230837-13230856 Msa0799830:intron 25.0%
! AATGGATAGAAACTAGAATT+AGG - chr5_3:13230880-13230899 Msa0799830:intron 25.0%
! AAGAGAAACTAGTATTAAGA+AGG - chr5_3:13231011-13231030 Msa0799830:intron 25.0%
!!! TAAGTATGTGTTTGTTTTAG+AGG + chr5_3:13231201-13231220 None:intergenic 25.0%
! TAAAACAAACACATACTTAG+TGG - chr5_3:13231202-13231221 Msa0799830:intron 25.0%
! AAAACAAACACATACTTAGT+GGG - chr5_3:13231203-13231222 Msa0799830:intron 25.0%
! TCATTTATATGTGTGACTAT+CGG + chr5_3:13231403-13231422 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_3:13231828-13231847 Msa0799830:intron 25.0%
! ACTATTTGAAGAGATTCTTA+GGG - chr5_3:13232065-13232084 Msa0799830:CDS 25.0%
! TAGAATTAGAAATGACAAGT+TGG - chr5_3:13230837-13230856 Msa0799830:intron 25.0%
! AATGGATAGAAACTAGAATT+AGG - chr5_3:13230880-13230899 Msa0799830:intron 25.0%
! AAGAGAAACTAGTATTAAGA+AGG - chr5_3:13231011-13231030 Msa0799830:intron 25.0%
!!! TAAGTATGTGTTTGTTTTAG+AGG + chr5_3:13231201-13231220 None:intergenic 25.0%
! TAAAACAAACACATACTTAG+TGG - chr5_3:13231202-13231221 Msa0799830:intron 25.0%
! AAAACAAACACATACTTAGT+GGG - chr5_3:13231203-13231222 Msa0799830:intron 25.0%
! TCATTTATATGTGTGACTAT+CGG + chr5_3:13231403-13231422 None:intergenic 25.0%
! TAATGCTTACCACAAATTTA+GGG - chr5_3:13231828-13231847 Msa0799830:intron 25.0%
! ACTATTTGAAGAGATTCTTA+GGG - chr5_3:13232065-13232084 Msa0799830:CDS 25.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_3:13230069-13230088 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_3:13230331-13230350 None:intergenic 30.0%
ACTGGACAGTTTATTTATTG+TGG - chr5_3:13230389-13230408 Msa0799830:three_prime_UTR 30.0%
CTGGACAGTTTATTTATTGT+GGG - chr5_3:13230390-13230409 Msa0799830:three_prime_UTR 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_3:13230413-13230432 Msa0799830:three_prime_UTR 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_3:13230479-13230498 Msa0799830:exon 30.0%
AAACTAGAATTAGGTGGTTT+AGG - chr5_3:13230889-13230908 Msa0799830:intron 30.0%
ATGTTAGAAGCTACAATATG+TGG + chr5_3:13231155-13231174 None:intergenic 30.0%
TGTAGCTTCTAACATAATGT+TGG - chr5_3:13231160-13231179 Msa0799830:intron 30.0%
CTCGCAATCAATTATACTAA+GGG + chr5_3:13231481-13231500 None:intergenic 30.0%
TCTCGCAATCAATTATACTA+AGG + chr5_3:13231482-13231501 None:intergenic 30.0%
AAAACTTGAATTATGTGGGA+TGG - chr5_3:13231547-13231566 Msa0799830:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_3:13231827-13231846 Msa0799830:intron 30.0%
GACTATTTGAAGAGATTCTT+AGG - chr5_3:13232064-13232083 Msa0799830:CDS 30.0%
! AAAGAATACCCAAGTAGTTT+TGG + chr5_3:13232140-13232159 None:intergenic 30.0%
TCATATAAATATGGGGCAAA+AGG + chr5_3:13232169-13232188 None:intergenic 30.0%
!!! TGTTTAGGTTGGATTTTTAG+TGG - chr5_3:13232332-13232351 Msa0799830:CDS 30.0%
ATAGTACTTCTGTAGTGAAA+AGG - chr5_3:13232416-13232435 Msa0799830:five_prime_UTR 30.0%
AAATGAGTTCAGAGAAGTTA+GGG + chr5_3:13230069-13230088 None:intergenic 30.0%
! TCTTATATCTAAAAGGGTGT+CGG + chr5_3:13230331-13230350 None:intergenic 30.0%
ACTGGACAGTTTATTTATTG+TGG - chr5_3:13230389-13230408 Msa0799830:three_prime_UTR 30.0%
CTGGACAGTTTATTTATTGT+GGG - chr5_3:13230390-13230409 Msa0799830:three_prime_UTR 30.0%
! AAAAAAGCTACTCTTGTTGT+TGG - chr5_3:13230413-13230432 Msa0799830:three_prime_UTR 30.0%
TGTAATGTTGAACATCATGT+TGG - chr5_3:13230479-13230498 Msa0799830:exon 30.0%
AAACTAGAATTAGGTGGTTT+AGG - chr5_3:13230889-13230908 Msa0799830:intron 30.0%
ATGTTAGAAGCTACAATATG+TGG + chr5_3:13231155-13231174 None:intergenic 30.0%
TGTAGCTTCTAACATAATGT+TGG - chr5_3:13231160-13231179 Msa0799830:intron 30.0%
CTCGCAATCAATTATACTAA+GGG + chr5_3:13231481-13231500 None:intergenic 30.0%
TCTCGCAATCAATTATACTA+AGG + chr5_3:13231482-13231501 None:intergenic 30.0%
AAAACTTGAATTATGTGGGA+TGG - chr5_3:13231547-13231566 Msa0799830:intron 30.0%
GTAATGCTTACCACAAATTT+AGG - chr5_3:13231827-13231846 Msa0799830:intron 30.0%
GACTATTTGAAGAGATTCTT+AGG - chr5_3:13232064-13232083 Msa0799830:CDS 30.0%
! AAAGAATACCCAAGTAGTTT+TGG + chr5_3:13232140-13232159 None:intergenic 30.0%
TCATATAAATATGGGGCAAA+AGG + chr5_3:13232169-13232188 None:intergenic 30.0%
!!! TGTTTAGGTTGGATTTTTAG+TGG - chr5_3:13232332-13232351 Msa0799830:CDS 30.0%
ATAGTACTTCTGTAGTGAAA+AGG - chr5_3:13232416-13232435 Msa0799830:five_prime_UTR 30.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_3:13230070-13230089 None:intergenic 35.0%
! TTGGAAATGTTTTGCCATTG+AGG - chr5_3:13230432-13230451 Msa0799830:three_prime_UTR 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_3:13230558-13230577 Msa0799830:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_3:13230563-13230582 None:intergenic 35.0%
GGATAGAAACTAGAATTAGG+TGG - chr5_3:13230883-13230902 Msa0799830:intron 35.0%
TAGTCTACTCTCCTTAATAC+AGG + chr5_3:13230939-13230958 None:intergenic 35.0%
AACACATACTTAGTGGGATA+AGG - chr5_3:13231209-13231228 Msa0799830:intron 35.0%
CATATGCACGAAAGTTTATG+CGG - chr5_3:13231359-13231378 Msa0799830:intron 35.0%
!!! GGTGTTGATGATTTTTTGAC+AGG - chr5_3:13231698-13231717 Msa0799830:intron 35.0%
!!! AAGTAGTTTTGGAACAGACA+AGG + chr5_3:13232129-13232148 None:intergenic 35.0%
TTGTCTGTTCCAAAACTACT+TGG - chr5_3:13232128-13232147 Msa0799830:CDS 35.0%
TGTCTGTTCCAAAACTACTT+GGG - chr5_3:13232129-13232148 Msa0799830:CDS 35.0%
CAGTAGAAATAGATGAAACC+CGG + chr5_3:13232258-13232277 None:intergenic 35.0%
!! GTTGTTTTACTACGTCGATT+CGG - chr5_3:13232388-13232407 Msa0799830:exon 35.0%
TCTGTAGTGAAAAGGTTACA+AGG - chr5_3:13232424-13232443 Msa0799830:five_prime_UTR 35.0%
CTGTAGTGAAAAGGTTACAA+GGG - chr5_3:13232425-13232444 Msa0799830:five_prime_UTR 35.0%
GAAATGAGTTCAGAGAAGTT+AGG + chr5_3:13230070-13230089 None:intergenic 35.0%
! TTGGAAATGTTTTGCCATTG+AGG - chr5_3:13230432-13230451 Msa0799830:three_prime_UTR 35.0%
! ATCCTGATAATGATACCTCT+AGG - chr5_3:13230558-13230577 Msa0799830:CDS 35.0%
!! AACCTAGAGGTATCATTATC+AGG + chr5_3:13230563-13230582 None:intergenic 35.0%
GGATAGAAACTAGAATTAGG+TGG - chr5_3:13230883-13230902 Msa0799830:intron 35.0%
TAGTCTACTCTCCTTAATAC+AGG + chr5_3:13230939-13230958 None:intergenic 35.0%
AACACATACTTAGTGGGATA+AGG - chr5_3:13231209-13231228 Msa0799830:intron 35.0%
CATATGCACGAAAGTTTATG+CGG - chr5_3:13231359-13231378 Msa0799830:intron 35.0%
!!! GGTGTTGATGATTTTTTGAC+AGG - chr5_3:13231698-13231717 Msa0799830:intron 35.0%
!!! AAGTAGTTTTGGAACAGACA+AGG + chr5_3:13232129-13232148 None:intergenic 35.0%
TTGTCTGTTCCAAAACTACT+TGG - chr5_3:13232128-13232147 Msa0799830:CDS 35.0%
TGTCTGTTCCAAAACTACTT+GGG - chr5_3:13232129-13232148 Msa0799830:CDS 35.0%
CAGTAGAAATAGATGAAACC+CGG + chr5_3:13232258-13232277 None:intergenic 35.0%
!! GTTGTTTTACTACGTCGATT+CGG - chr5_3:13232388-13232407 Msa0799830:exon 35.0%
TCTGTAGTGAAAAGGTTACA+AGG - chr5_3:13232424-13232443 Msa0799830:five_prime_UTR 35.0%
CTGTAGTGAAAAGGTTACAA+GGG - chr5_3:13232425-13232444 Msa0799830:five_prime_UTR 35.0%
! AGAGTCGTAGGTTTAGTTTC+CGG - chr5_3:13230113-13230132 Msa0799830:three_prime_UTR 40.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_3:13230233-13230252 Msa0799830:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_3:13230245-13230264 Msa0799830:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_3:13230262-13230281 None:intergenic 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_3:13230464-13230483 None:intergenic 40.0%
ATGAGAGAGAACAAACCTAG+AGG + chr5_3:13230576-13230595 None:intergenic 40.0%
AAGGAGAGTAGACTAGATGA+AGG - chr5_3:13230944-13230963 Msa0799830:intron 40.0%
AGGAGAGTAGACTAGATGAA+GGG - chr5_3:13230945-13230964 Msa0799830:intron 40.0%
AAGGGGAGTTAAATCACTTG+AGG - chr5_3:13230963-13230982 Msa0799830:intron 40.0%
GGAGTTAAATCACTTGAGGT+AGG - chr5_3:13230967-13230986 Msa0799830:intron 40.0%
AAATGGATACAGACATGAGG+TGG + chr5_3:13231113-13231132 None:intergenic 40.0%
GTGAAATGGATACAGACATG+AGG + chr5_3:13231116-13231135 None:intergenic 40.0%
ACATAATGTTGGTCCACGTT+TGG - chr5_3:13231171-13231190 Msa0799830:intron 40.0%
CATAATGTTGGTCCACGTTT+GGG - chr5_3:13231172-13231191 Msa0799830:intron 40.0%
ATACTTAGTGGGATAAGGCT+TGG - chr5_3:13231214-13231233 Msa0799830:intron 40.0%
CTTATTGCACTTCTGATGCA+TGG - chr5_3:13231447-13231466 Msa0799830:intron 40.0%
TGAATTATGTGGGATGGTGA+TGG - chr5_3:13231553-13231572 Msa0799830:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_3:13231716-13231735 Msa0799830:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_3:13231801-13231820 Msa0799830:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_3:13231836-13231855 Msa0799830:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_3:13231840-13231859 None:intergenic 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_3:13231892-13231911 Msa0799830:intron 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_3:13231930-13231949 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_3:13231935-13231954 Msa0799830:intron 40.0%
! TTCATAGTTTGCCTTCGTTC+CGG - chr5_3:13232236-13232255 Msa0799830:CDS 40.0%
!!! GGATTTTTAGTGGTAAGTGC+AGG - chr5_3:13232342-13232361 Msa0799830:CDS 40.0%
CAGGATTCATACCTTGTTCA+GGG - chr5_3:13232361-13232380 Msa0799830:CDS 40.0%
! AGAGTCGTAGGTTTAGTTTC+CGG - chr5_3:13230113-13230132 Msa0799830:three_prime_UTR 40.0%
CTCGATTTCGGTGAAAGAAA+CGG - chr5_3:13230233-13230252 Msa0799830:three_prime_UTR 40.0%
GAAAGAAACGGTTACCTCAA+AGG - chr5_3:13230245-13230264 Msa0799830:three_prime_UTR 40.0%
TTTCGTTCACTACTCCTTTG+AGG + chr5_3:13230262-13230281 None:intergenic 40.0%
TTACAAATAACCGCACCTTC+AGG + chr5_3:13230464-13230483 None:intergenic 40.0%
ATGAGAGAGAACAAACCTAG+AGG + chr5_3:13230576-13230595 None:intergenic 40.0%
AAGGAGAGTAGACTAGATGA+AGG - chr5_3:13230944-13230963 Msa0799830:intron 40.0%
AGGAGAGTAGACTAGATGAA+GGG - chr5_3:13230945-13230964 Msa0799830:intron 40.0%
AAGGGGAGTTAAATCACTTG+AGG - chr5_3:13230963-13230982 Msa0799830:intron 40.0%
GGAGTTAAATCACTTGAGGT+AGG - chr5_3:13230967-13230986 Msa0799830:intron 40.0%
AAATGGATACAGACATGAGG+TGG + chr5_3:13231113-13231132 None:intergenic 40.0%
GTGAAATGGATACAGACATG+AGG + chr5_3:13231116-13231135 None:intergenic 40.0%
ACATAATGTTGGTCCACGTT+TGG - chr5_3:13231171-13231190 Msa0799830:intron 40.0%
CATAATGTTGGTCCACGTTT+GGG - chr5_3:13231172-13231191 Msa0799830:intron 40.0%
ATACTTAGTGGGATAAGGCT+TGG - chr5_3:13231214-13231233 Msa0799830:intron 40.0%
CTTATTGCACTTCTGATGCA+TGG - chr5_3:13231447-13231466 Msa0799830:intron 40.0%
TGAATTATGTGGGATGGTGA+TGG - chr5_3:13231553-13231572 Msa0799830:intron 40.0%
ACAGGATTAAGCTACCATCA+GGG - chr5_3:13231716-13231735 Msa0799830:intron 40.0%
AACTGAGAAGCCAATGCTTA+AGG - chr5_3:13231801-13231820 Msa0799830:intron 40.0%
! ACCACAAATTTAGGGTGAAG+AGG - chr5_3:13231836-13231855 Msa0799830:intron 40.0%
TCCTCTTCACCCTAAATTTG+TGG + chr5_3:13231840-13231859 None:intergenic 40.0%
AATCCAGTTGAACATCCTCA+TGG - chr5_3:13231892-13231911 Msa0799830:intron 40.0%
TACTAGCATGTCCAATATGC+TGG + chr5_3:13231930-13231949 None:intergenic 40.0%
TTGGACATGCTAGTACTGTT+AGG - chr5_3:13231935-13231954 Msa0799830:intron 40.0%
! TTCATAGTTTGCCTTCGTTC+CGG - chr5_3:13232236-13232255 Msa0799830:CDS 40.0%
!!! GGATTTTTAGTGGTAAGTGC+AGG - chr5_3:13232342-13232361 Msa0799830:CDS 40.0%
CAGGATTCATACCTTGTTCA+GGG - chr5_3:13232361-13232380 Msa0799830:CDS 40.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_3:13230085-13230104 Msa0799830:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_3:13230149-13230168 Msa0799830:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_3:13230229-13230248 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_3:13230275-13230294 Msa0799830:three_prime_UTR 45.0%
CCTTCAGGAATCATCCTCAA+TGG + chr5_3:13230449-13230468 None:intergenic 45.0%
CCATTGAGGATGATTCCTGA+AGG - chr5_3:13230446-13230465 Msa0799830:three_prime_UTR 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_3:13230488-13230507 Msa0799830:CDS 45.0%
GACGCATGGAACCTGTATTA+AGG - chr5_3:13230925-13230944 Msa0799830:intron 45.0%
GGAGAGTAGACTAGATGAAG+GGG - chr5_3:13230946-13230965 Msa0799830:intron 45.0%
TGTCTGTATCCATTTCACCG+CGG - chr5_3:13231118-13231137 Msa0799830:intron 45.0%
TATCCATTTCACCGCGGAAA+TGG - chr5_3:13231124-13231143 Msa0799830:intron 45.0%
!! TTTTAGAGGCTTCCCAAACG+TGG + chr5_3:13231187-13231206 None:intergenic 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_3:13231715-13231734 Msa0799830:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_3:13231717-13231736 Msa0799830:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_3:13231733-13231752 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_3:13231757-13231776 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_3:13231757-13231776 Msa0799830:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_3:13231758-13231777 Msa0799830:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_3:13231814-13231833 None:intergenic 45.0%
TTAGGGTGAAGAGGAATTGC+TGG - chr5_3:13231845-13231864 Msa0799830:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_3:13231927-13231946 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_3:13231988-13232007 Msa0799830:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_3:13231999-13232018 Msa0799830:CDS 45.0%
! TCATAGTTTGCCTTCGTTCC+GGG - chr5_3:13232237-13232256 Msa0799830:CDS 45.0%
ATAGATGAAACCCGGAACGA+AGG + chr5_3:13232250-13232269 None:intergenic 45.0%
GCAGGATTCATACCTTGTTC+AGG - chr5_3:13232360-13232379 Msa0799830:CDS 45.0%
TTCATACCTTGTTCAGGGAG+TGG - chr5_3:13232366-13232385 Msa0799830:CDS 45.0%
AAACAACCACTCCCTGAACA+AGG + chr5_3:13232375-13232394 None:intergenic 45.0%
ATTTCCATATCATCGCCGCA+CGG - chr5_3:13230085-13230104 Msa0799830:three_prime_UTR 45.0%
GTTATCAGGGCACAACGTAA+AGG - chr5_3:13230149-13230168 Msa0799830:three_prime_UTR 45.0%
TTTCACCGAAATCGAGACTG+CGG + chr5_3:13230229-13230248 None:intergenic 45.0%
AACGAAATCATTCACGACCC+AGG - chr5_3:13230275-13230294 Msa0799830:three_prime_UTR 45.0%
CCTTCAGGAATCATCCTCAA+TGG + chr5_3:13230449-13230468 None:intergenic 45.0%
CCATTGAGGATGATTCCTGA+AGG - chr5_3:13230446-13230465 Msa0799830:three_prime_UTR 45.0%
!! GAACATCATGTTGGTGATCG+TGG - chr5_3:13230488-13230507 Msa0799830:CDS 45.0%
GACGCATGGAACCTGTATTA+AGG - chr5_3:13230925-13230944 Msa0799830:intron 45.0%
GGAGAGTAGACTAGATGAAG+GGG - chr5_3:13230946-13230965 Msa0799830:intron 45.0%
TGTCTGTATCCATTTCACCG+CGG - chr5_3:13231118-13231137 Msa0799830:intron 45.0%
TATCCATTTCACCGCGGAAA+TGG - chr5_3:13231124-13231143 Msa0799830:intron 45.0%
!! TTTTAGAGGCTTCCCAAACG+TGG + chr5_3:13231187-13231206 None:intergenic 45.0%
GACAGGATTAAGCTACCATC+AGG - chr5_3:13231715-13231734 Msa0799830:intron 45.0%
CAGGATTAAGCTACCATCAG+GGG - chr5_3:13231717-13231736 Msa0799830:intron 45.0%
ACAATCTTCTTTGCCCCTGA+TGG + chr5_3:13231733-13231752 None:intergenic 45.0%
! ATCATAGCTCTGCACTCACT+TGG + chr5_3:13231757-13231776 None:intergenic 45.0%
AGTGAGTGCAGAGCTATGAT+TGG - chr5_3:13231757-13231776 Msa0799830:intron 45.0%
GTGAGTGCAGAGCTATGATT+GGG - chr5_3:13231758-13231777 Msa0799830:intron 45.0%
GCATTACCAGCCTTAAGCAT+TGG + chr5_3:13231814-13231833 None:intergenic 45.0%
TTAGGGTGAAGAGGAATTGC+TGG - chr5_3:13231845-13231864 Msa0799830:intron 45.0%
TAGCATGTCCAATATGCTGG+TGG + chr5_3:13231927-13231946 None:intergenic 45.0%
CTCATTGCTGCTAAGAGAAC+TGG - chr5_3:13231988-13232007 Msa0799830:CDS 45.0%
TAAGAGAACTGGTCGTCTCA+GGG - chr5_3:13231999-13232018 Msa0799830:CDS 45.0%
! TCATAGTTTGCCTTCGTTCC+GGG - chr5_3:13232237-13232256 Msa0799830:CDS 45.0%
ATAGATGAAACCCGGAACGA+AGG + chr5_3:13232250-13232269 None:intergenic 45.0%
GCAGGATTCATACCTTGTTC+AGG - chr5_3:13232360-13232379 Msa0799830:CDS 45.0%
TTCATACCTTGTTCAGGGAG+TGG - chr5_3:13232366-13232385 Msa0799830:CDS 45.0%
AAACAACCACTCCCTGAACA+AGG + chr5_3:13232375-13232394 None:intergenic 45.0%
!! TAAAAATTTCATATAAATAT+GGG + chr5_3:13232177-13232196 None:intergenic 5.0%
!! TTAAAAATTTCATATAAATA+TGG + chr5_3:13232178-13232197 None:intergenic 5.0%
!! TAAAAATTTCATATAAATAT+GGG + chr5_3:13232177-13232196 None:intergenic 5.0%
!! TTAAAAATTTCATATAAATA+TGG + chr5_3:13232178-13232197 None:intergenic 5.0%
! AGGTTTAGTTTCCGGCGAGA+TGG - chr5_3:13230121-13230140 Msa0799830:three_prime_UTR 50.0%
! GGTTTAGTTTCCGGCGAGAT+GGG - chr5_3:13230122-13230141 Msa0799830:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_3:13230136-13230155 Msa0799830:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_3:13230183-13230202 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_3:13230221-13230240 Msa0799830:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_3:13230311-13230330 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_3:13230358-13230377 Msa0799830:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_3:13230359-13230378 Msa0799830:three_prime_UTR 50.0%
GAGGATGATTCCTGAAGGTG+CGG - chr5_3:13230451-13230470 Msa0799830:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_3:13230501-13230520 Msa0799830:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_3:13230509-13230528 Msa0799830:CDS 50.0%
GCATGTGTAGAGAAGACGCA+TGG - chr5_3:13230911-13230930 Msa0799830:intron 50.0%
TCTCCATTTCCGCGGTGAAA+TGG + chr5_3:13231130-13231149 None:intergenic 50.0%
ATGTGGCTTCTCCATTTCCG+CGG + chr5_3:13231138-13231157 None:intergenic 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_3:13231769-13231788 Msa0799830:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_3:13231772-13231791 Msa0799830:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_3:13231805-13231824 Msa0799830:intron 50.0%
! GAAGAGGAATTGCTGGCCTA+AGG - chr5_3:13231852-13231871 Msa0799830:intron 50.0%
! AATTGCTGGCCTAAGGTTCG+TGG - chr5_3:13231859-13231878 Msa0799830:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_3:13231871-13231890 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_3:13231898-13231917 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_3:13231895-13231914 Msa0799830:intron 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_3:13231898-13231917 Msa0799830:intron 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_3:13231916-13231935 Msa0799830:intron 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_3:13231973-13231992 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_3:13231998-13232017 Msa0799830:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_3:13232000-13232019 Msa0799830:CDS 50.0%
! AGGTTTAGTTTCCGGCGAGA+TGG - chr5_3:13230121-13230140 Msa0799830:three_prime_UTR 50.0%
! GGTTTAGTTTCCGGCGAGAT+GGG - chr5_3:13230122-13230141 Msa0799830:three_prime_UTR 50.0%
CGAGATGGGTAGGGTTATCA+GGG - chr5_3:13230136-13230155 Msa0799830:three_prime_UTR 50.0%
GTGGGTGTGGGACTTGAAAA+CGG + chr5_3:13230183-13230202 None:intergenic 50.0%
CGTTTCCGCAGTCTCGATTT+CGG - chr5_3:13230221-13230240 Msa0799830:three_prime_UTR 50.0%
CGGAATGTGACCTTAGCTAG+TGG + chr5_3:13230311-13230330 None:intergenic 50.0%
! AGAGCTTTTCGTTGCTGCTG+AGG - chr5_3:13230358-13230377 Msa0799830:three_prime_UTR 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG - chr5_3:13230359-13230378 Msa0799830:three_prime_UTR 50.0%
GAGGATGATTCCTGAAGGTG+CGG - chr5_3:13230451-13230470 Msa0799830:three_prime_UTR 50.0%
! GTGATCGTGGTGCTTTTGCT+AGG - chr5_3:13230501-13230520 Msa0799830:CDS 50.0%
! GGTGCTTTTGCTAGGTGTTC+TGG - chr5_3:13230509-13230528 Msa0799830:CDS 50.0%
GCATGTGTAGAGAAGACGCA+TGG - chr5_3:13230911-13230930 Msa0799830:intron 50.0%
TCTCCATTTCCGCGGTGAAA+TGG + chr5_3:13231130-13231149 None:intergenic 50.0%
ATGTGGCTTCTCCATTTCCG+CGG + chr5_3:13231138-13231157 None:intergenic 50.0%
GCTATGATTGGGCAAGTTGC+AGG - chr5_3:13231769-13231788 Msa0799830:intron 50.0%
ATGATTGGGCAAGTTGCAGG+TGG - chr5_3:13231772-13231791 Msa0799830:intron 50.0%
GAGAAGCCAATGCTTAAGGC+TGG - chr5_3:13231805-13231824 Msa0799830:intron 50.0%
! GAAGAGGAATTGCTGGCCTA+AGG - chr5_3:13231852-13231871 Msa0799830:intron 50.0%
! AATTGCTGGCCTAAGGTTCG+TGG - chr5_3:13231859-13231878 Msa0799830:intron 50.0%
ATAGCCACACCACGAACCTT+AGG + chr5_3:13231871-13231890 None:intergenic 50.0%
CCTCCATGAGGATGTTCAAC+TGG + chr5_3:13231898-13231917 None:intergenic 50.0%
CCAGTTGAACATCCTCATGG+AGG - chr5_3:13231895-13231914 Msa0799830:intron 50.0%
GTTGAACATCCTCATGGAGG+AGG - chr5_3:13231898-13231917 Msa0799830:intron 50.0%
GGAGGTAACCACCAGCATAT+TGG - chr5_3:13231916-13231935 Msa0799830:intron 50.0%
ATGAGACCAACCTTCTGTCC+AGG + chr5_3:13231973-13231992 None:intergenic 50.0%
CTAAGAGAACTGGTCGTCTC+AGG - chr5_3:13231998-13232017 Msa0799830:CDS 50.0%
AAGAGAACTGGTCGTCTCAG+GGG - chr5_3:13232000-13232019 Msa0799830:CDS 50.0%
CTACGACTCTAACCACCGTG+CGG + chr5_3:13230103-13230122 None:intergenic 55.0%
TAGTTTCCGGCGAGATGGGT+AGG - chr5_3:13230126-13230145 Msa0799830:three_prime_UTR 55.0%
AGTTTCCGGCGAGATGGGTA+GGG - chr5_3:13230127-13230146 Msa0799830:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_3:13230135-13230154 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_3:13230135-13230154 Msa0799830:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_3:13230155-13230174 Msa0799830:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_3:13230281-13230300 Msa0799830:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+TGG - chr5_3:13230371-13230390 Msa0799830:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_3:13231775-13231794 Msa0799830:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_3:13231910-13231929 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_3:13231960-13231979 Msa0799830:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_3:13231970-13231989 None:intergenic 55.0%
AGCTGCTTCTGCTGCTGCTA+AGG - chr5_3:13232026-13232045 Msa0799830:CDS 55.0%
CTACGACTCTAACCACCGTG+CGG + chr5_3:13230103-13230122 None:intergenic 55.0%
TAGTTTCCGGCGAGATGGGT+AGG - chr5_3:13230126-13230145 Msa0799830:three_prime_UTR 55.0%
AGTTTCCGGCGAGATGGGTA+GGG - chr5_3:13230127-13230146 Msa0799830:three_prime_UTR 55.0%
GATAACCCTACCCATCTCGC+CGG + chr5_3:13230135-13230154 None:intergenic 55.0%
GCGAGATGGGTAGGGTTATC+AGG - chr5_3:13230135-13230154 Msa0799830:three_prime_UTR 55.0%
AGGGCACAACGTAAAGGAGC+AGG - chr5_3:13230155-13230174 Msa0799830:three_prime_UTR 55.0%
ATCATTCACGACCCAGGTCG+CGG - chr5_3:13230281-13230300 Msa0799830:three_prime_UTR 55.0%
GCTGCTGAGGGACTTTACAC+TGG - chr5_3:13230371-13230390 Msa0799830:three_prime_UTR 55.0%
ATTGGGCAAGTTGCAGGTGG+AGG - chr5_3:13231775-13231794 Msa0799830:intron 55.0%
TGGTGGTTACCTCCTCCATG+AGG + chr5_3:13231910-13231929 None:intergenic 55.0%
TGATGCTCCTCCTGGACAGA+AGG - chr5_3:13231960-13231979 Msa0799830:CDS 55.0%
AGACCAACCTTCTGTCCAGG+AGG + chr5_3:13231970-13231989 None:intergenic 55.0%
AGCTGCTTCTGCTGCTGCTA+AGG - chr5_3:13232026-13232045 Msa0799830:CDS 55.0%
TCCATATCATCGCCGCACGG+TGG - chr5_3:13230088-13230107 Msa0799830:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_3:13230092-13230111 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_3:13230101-13230120 Msa0799830:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_3:13230191-13230210 Msa0799830:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_3:13230195-13230214 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_3:13230201-13230220 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_3:13230205-13230224 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_3:13230217-13230236 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_3:13230218-13230237 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_3:13230298-13230317 Msa0799830:three_prime_UTR 60.0%
CTGGCCTAAGGTTCGTGGTG+TGG - chr5_3:13231864-13231883 Msa0799830:intron 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_3:13231952-13231971 Msa0799830:intron 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_3:13231964-13231983 Msa0799830:CDS 60.0%
TCCATATCATCGCCGCACGG+TGG - chr5_3:13230088-13230107 Msa0799830:three_prime_UTR 60.0%
ACCACCGTGCGGCGATGATA+TGG + chr5_3:13230092-13230111 None:intergenic 60.0%
CGCACGGTGGTTAGAGTCGT+AGG - chr5_3:13230101-13230120 Msa0799830:three_prime_UTR 60.0%
TCCCACACCCACCATCGCAA+AGG - chr5_3:13230191-13230210 Msa0799830:three_prime_UTR 60.0%
!! GCCTTTGCGATGGTGGGTGT+GGG + chr5_3:13230195-13230214 None:intergenic 60.0%
TGCTGGGCCTTTGCGATGGT+GGG + chr5_3:13230201-13230220 None:intergenic 60.0%
AACGTGCTGGGCCTTTGCGA+TGG + chr5_3:13230205-13230224 None:intergenic 60.0%
CGAGACTGCGGAAACGTGCT+GGG + chr5_3:13230217-13230236 None:intergenic 60.0%
TCGAGACTGCGGAAACGTGC+TGG + chr5_3:13230218-13230237 None:intergenic 60.0%
TCGCGGTGCACCACTAGCTA+AGG - chr5_3:13230298-13230317 Msa0799830:three_prime_UTR 60.0%
CTGGCCTAAGGTTCGTGGTG+TGG - chr5_3:13231864-13231883 Msa0799830:intron 60.0%
GTTAGGCGTGATGCTCCTCC+TGG - chr5_3:13231952-13231971 Msa0799830:intron 60.0%
GCTCCTCCTGGACAGAAGGT+TGG - chr5_3:13231964-13231983 Msa0799830:CDS 60.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_3:13230196-13230215 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_3:13230202-13230221 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_3:13230295-13230314 None:intergenic 65.0%
!! GGCCTTTGCGATGGTGGGTG+TGG + chr5_3:13230196-13230215 None:intergenic 65.0%
GTGCTGGGCCTTTGCGATGG+TGG + chr5_3:13230202-13230221 None:intergenic 65.0%
CTAGTGGTGCACCGCGACCT+GGG + chr5_3:13230295-13230314 None:intergenic 65.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_3:13230296-13230315 None:intergenic 70.0%
GCTAGTGGTGCACCGCGACC+TGG + chr5_3:13230296-13230315 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13230062 13232475 13230062 ID=Msa0799830;Name=Msa0799830
chr5_3 mRNA 13230062 13232475 13230062 ID=Msa0799830-mRNA-1;Parent=Msa0799830;Name=Msa0799830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=78|1|1|1|1|1|2|419|258
chr5_3 exon 13230062 13230817 13230062 ID=Msa0799830-mRNA-1:exon:5446;Parent=Msa0799830-mRNA-1
chr5_3 exon 13231958 13232475 13231958 ID=Msa0799830-mRNA-1:exon:5445;Parent=Msa0799830-mRNA-1
chr5_3 five_prime_UTR 13232398 13232475 13232398 ID=Msa0799830-mRNA-1:five_prime_utr;Parent=Msa0799830-mRNA-1
chr5_3 CDS 13231958 13232397 13231958 ID=Msa0799830-mRNA-1:cds;Parent=Msa0799830-mRNA-1
chr5_3 CDS 13230481 13230817 13230481 ID=Msa0799830-mRNA-1:cds;Parent=Msa0799830-mRNA-1
chr5_3 three_prime_UTR 13230062 13230480 13230062 ID=Msa0799830-mRNA-1:three_prime_utr;Parent=Msa0799830-mRNA-1
Gene Sequence

>Msa0799830

ATGGGTAGGGTTATCAGGGCACAACGTAAAGGAGCAGGCTCCGTTTTCAAGTCCCACACCCACCATCGCAAAGGCCCAGCACGTTTCCGCAGTCTCGATTTCGGTGAAAGAAACGGTTACCTCAAAGGAGTAGTGAACGAAATCATTCACGACCCAGGTCGCGGTGCACCACTAGCTAAGGTCACATTCCGACACCCTTTTAGATATAAGAAACAGAAAGAGCTTTTCGTTGCTGCTGAGGGACTTTACACTGGACAGTTTATTTATTGTGGGAAAAAAGCTACTCTTGTTGTTGGAAATGTTTTGCCATTGAGGATGATTCCTGAAGGTGCGGTTATTTGTAATGTTGAACATCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGTTCTGGTGATTATGCTATTGTTATTAGTCATAATCCTGATAATGATACCTCTAGGATTAAGCTACCATCAGGGGCAAAGAAGATTGTTCCAAGTGAGTGCAGAGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCAATGCTTAAGGCTGGTAATGCTTACCACAAATTTAGGGTGAAGAGGAATTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAACATCCTCATGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACTGTTAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCTAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTTCTGCTGCTGCTAAGGCTGATTAA

Protein sequence

>Msa0799830

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVNEIIHDPGRGAPLAKVTFRHPFRYKKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRMIPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAAAKAD*