Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037050 | sp|Q8LF05|RBL19_ARATH | 66.890 | 299 | 99 | 0 | 20 | 318 | 6 | 304 | 2.41e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037050 | Msa0206370 | 0.820109 | 8.161553e-53 | -8.615850e-47 |
| Msa0037050 | Msa0273360 | 0.801424 | 9.062180e-49 | -8.615850e-47 |
| Msa0037050 | Msa0279000 | 0.807900 | 4.031400e-50 | -8.615850e-47 |
| Msa0037050 | Msa0336460 | 0.811779 | 5.901507e-51 | -8.615850e-47 |
| Msa0037050 | Msa0416390 | 0.803332 | 3.666753e-49 | -8.615850e-47 |
| Msa0037050 | Msa0447870 | 0.811252 | 7.682271e-51 | -8.615850e-47 |
| Msa0037050 | Msa0458100 | 0.808672 | 2.759973e-50 | -8.615850e-47 |
| Msa0037050 | Msa0530660 | 0.800841 | 1.192668e-48 | -8.615850e-47 |
| Msa0037050 | Msa0587180 | 0.812930 | 3.309447e-51 | -8.615850e-47 |
| Msa0037050 | Msa0627360 | 0.801287 | 9.667041e-49 | -8.615850e-47 |
| Msa0037050 | Msa0630440 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0037050 | Msa0673940 | 0.804400 | 2.199528e-49 | -8.615850e-47 |
| Msa0037050 | Msa0773960 | 0.804603 | 1.995799e-49 | -8.615850e-47 |
| Msa0037050 | Msa1021560 | 0.801216 | 9.995056e-49 | -8.615850e-47 |
| Msa0037050 | Msa1042300 | 0.801548 | 8.546809e-49 | -8.615850e-47 |
| Msa0037050 | Msa1226370 | 0.814477 | 1.510382e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037050 | MtrunA17_Chr1g0199931 | 99.057 | 318 | 2 | 1 | 1 | 318 | 1 | 317 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037050 | AT3G07950.1 | 66.890 | 299 | 99 | 0 | 20 | 318 | 6 | 304 | 2.45e-144 | 409 |
Find 98 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTAAAATATTCCTTTA+AGG | 0.111127 | 1_1:-65965332 | None:intergenic |
| TCTAGCTATACGCCACTTTC+TGG | 0.171913 | 1_1:+65964132 | Msa0037050:intron |
| ATAGTTTGTCTTCTCTTAAT+TGG | 0.213685 | 1_1:+65963628 | Msa0037050:CDS |
| TATCTCCCAACTGTTATATT+TGG | 0.226590 | 1_1:+65964426 | Msa0037050:CDS |
| GTTCTATTGTTCTGAGCTTC+TGG | 0.234816 | 1_1:+65964385 | Msa0037050:CDS |
| GCAAGTTGCTTGAGCCAGTA+TGG | 0.253816 | 1_1:+65963650 | Msa0037050:CDS |
| TCATTCTTGACATCCAATAT+TGG | 0.285799 | 1_1:-65965493 | None:intergenic |
| GGATTTCATGGAGTGATATC+TGG | 0.288533 | 1_1:+65964153 | Msa0037050:CDS |
| ATTGCTTATCGATCCAATAT+TGG | 0.294681 | 1_1:+65965480 | Msa0037050:three_prime_UTR |
| TGGAGTGATATCTGGCTTCT+TGG | 0.301472 | 1_1:+65964161 | Msa0037050:CDS |
| TTATCGACTGTGTCGGTGTC+TGG | 0.303188 | 1_1:+65962835 | Msa0037050:CDS |
| ACGCCACTTTCTGGATTTCA+TGG | 0.317090 | 1_1:+65964141 | Msa0037050:CDS |
| TATCTGAATTTACAAAATCT+AGG | 0.321788 | 1_1:-65965235 | None:intergenic |
| CGCTCATGATAGTTTCATAT+TGG | 0.322870 | 1_1:-65965265 | None:intergenic |
| TCACCCTTAAGCTTTGTTTC+CGG | 0.323823 | 1_1:-65964492 | None:intergenic |
| AGACAAATAAAAGAAAGAAT+TGG | 0.330289 | 1_1:+65962640 | Msa0037050:five_prime_UTR |
| TTTGTAAATTCAGATAAGTT+TGG | 0.343360 | 1_1:+65965242 | Msa0037050:three_prime_UTR |
| CGATGAAATATTGATGCAAT+AGG | 0.351484 | 1_1:-65964673 | None:intergenic |
| ATAACTTACCTTAAAATCTC+TGG | 0.362264 | 1_1:-65964549 | None:intergenic |
| TTGGCTACTTCGCGGAGTGC+AGG | 0.365183 | 1_1:+65965175 | Msa0037050:CDS |
| AACAGTTTGTTCAACGTAAC+CGG | 0.368690 | 1_1:-65963481 | None:intergenic |
| TACGTTGAACAAACTGTTCA+TGG | 0.372400 | 1_1:+65963486 | Msa0037050:CDS |
| CGTCTCCTAGATGCCTCAAT+GGG | 0.379047 | 1_1:-65964775 | None:intergenic |
| GATGCTGAAGATTACGATCT+TGG | 0.405414 | 1_1:+65964727 | Msa0037050:CDS |
| GACAAATAAAAGAAAGAATT+GGG | 0.407285 | 1_1:+65962641 | Msa0037050:five_prime_UTR |
| AATTCCCTGGGACCCCATAC+TGG | 0.413994 | 1_1:-65963664 | None:intergenic |
| GATGCAATAGGATCTATTAC+TGG | 0.414267 | 1_1:-65964661 | None:intergenic |
| CTTGGAAGTGAACATTTGCC+AGG | 0.425379 | 1_1:+65964745 | Msa0037050:CDS |
| CCAACCTTTCTTCCAGTGCT+CGG | 0.426478 | 1_1:-65965141 | None:intergenic |
| CAAGTTGCTTGAGCCAGTAT+GGG | 0.433068 | 1_1:+65963651 | Msa0037050:CDS |
| GATGAACTTTATAAATTCCC+TGG | 0.433979 | 1_1:-65963677 | None:intergenic |
| AGAAAGAGGTGCCCGAGCAC+TGG | 0.436362 | 1_1:+65965129 | Msa0037050:CDS |
| GAACACAATAAAGCGATAGA+TGG | 0.444977 | 1_1:-65964366 | None:intergenic |
| GCTTCTTCTGCCAGTATCTC+AGG | 0.451123 | 1_1:-65964470 | None:intergenic |
| CTGACCCCATTGAGGCATCT+AGG | 0.457185 | 1_1:+65964770 | Msa0037050:CDS |
| GCTGGATTTACCTGAGATAC+TGG | 0.457712 | 1_1:+65964460 | Msa0037050:CDS |
| TGGCTACTTCGCGGAGTGCA+GGG | 0.459320 | 1_1:+65965176 | Msa0037050:CDS |
| ACCGGCTGTAATGAGGTTCC+AGG | 0.465128 | 1_1:-65963463 | None:intergenic |
| GAAGCCGGAAACAAAGCTTA+AGG | 0.465257 | 1_1:+65964488 | Msa0037050:CDS |
| CCGTCTCCTAGATGCCTCAA+TGG | 0.465259 | 1_1:-65964776 | None:intergenic |
| GCAGGACAATACCATTTGCC+TGG | 0.468808 | 1_1:+65963445 | Msa0037050:intron |
| GCCTCAATGGGGTCAGAACC+TGG | 0.474004 | 1_1:-65964763 | None:intergenic |
| CAACCTTTCTTCCAGTGCTC+GGG | 0.477825 | 1_1:-65965140 | None:intergenic |
| GCGAGGTAGGTGAGAGCGGA+AGG | 0.478280 | 1_1:-65962925 | None:intergenic |
| TATGTACCAAATATAACAGT+TGG | 0.478340 | 1_1:-65964432 | None:intergenic |
| TTGAGCCAGTATGGGGTCCC+AGG | 0.478497 | 1_1:+65963659 | Msa0037050:CDS |
| ATCTGAATTTACAAAATCTA+GGG | 0.480923 | 1_1:-65965234 | None:intergenic |
| TATTTGGTACATATATGAGC+TGG | 0.486230 | 1_1:+65964442 | Msa0037050:CDS |
| TCTGAGCTTCTGGATAATAG+AGG | 0.494967 | 1_1:+65964395 | Msa0037050:CDS |
| AAGCCGGAAACAAAGCTTAA+GGG | 0.498827 | 1_1:+65964489 | Msa0037050:CDS |
| ACGTTGAACAAACTGTTCAT+GGG | 0.500320 | 1_1:+65963487 | Msa0037050:CDS |
| TGGATTCACTCGACTCTGCA+AGG | 0.504180 | 1_1:+65962855 | Msa0037050:CDS |
| TTTGTACTACATTACAAGAC+AGG | 0.505647 | 1_1:+65963750 | Msa0037050:CDS |
| TAACTTACCTTAAAATCTCT+GGG | 0.509944 | 1_1:-65964548 | None:intergenic |
| GTAATGAGGTTCCAGGCAAA+TGG | 0.511611 | 1_1:-65963456 | None:intergenic |
| ACGAAAGGAAGCTCTTGATC+TGG | 0.516753 | 1_1:-65964204 | None:intergenic |
| GTGCCCGAGCACTGGAAGAA+AGG | 0.518496 | 1_1:+65965137 | Msa0037050:CDS |
| GCCTGGAACCTCATTACAGC+CGG | 0.524904 | 1_1:+65963462 | Msa0037050:CDS |
| ACCTCGCTCTCATTCCCGCC+AGG | 0.526374 | 1_1:+65962941 | Msa0037050:CDS |
| TCCCGTCTCATCACAGTCAC+AGG | 0.530989 | 1_1:+65962713 | Msa0037050:CDS |
| GAGAATGCAAAATCCTCACT+TGG | 0.534096 | 1_1:-65964516 | None:intergenic |
| TGATTATACAACTGCATGGA+AGG | 0.535217 | 1_1:+65965444 | Msa0037050:three_prime_UTR |
| CCGAGCACTGGAAGAAAGGT+TGG | 0.540323 | 1_1:+65965141 | Msa0037050:CDS |
| ATGAACTTTATAAATTCCCT+GGG | 0.543126 | 1_1:-65963676 | None:intergenic |
| GAGATACTGGCAGAAGAAGC+CGG | 0.547275 | 1_1:+65964473 | Msa0037050:CDS |
| GACTGTGATCTTCATGTGAG+TGG | 0.547508 | 1_1:+65965365 | Msa0037050:three_prime_UTR |
| ACTCCATGAAATCCAGAAAG+TGG | 0.547828 | 1_1:-65964144 | None:intergenic |
| GAGAGCGAGGTAGGTGAGAG+CGG | 0.549328 | 1_1:-65962929 | None:intergenic |
| GCCAGGTTCTGACCCCATTG+AGG | 0.551934 | 1_1:+65964762 | Msa0037050:CDS |
| CAACGTAACCGGCTGTAATG+AGG | 0.557570 | 1_1:-65963470 | None:intergenic |
| TGTGATGAGACGGGAAGAGA+AGG | 0.558428 | 1_1:-65962705 | None:intergenic |
| AAGGTTGGCTAACGAGAGGT+TGG | 0.561612 | 1_1:+65965156 | Msa0037050:CDS |
| ACGAGAGGTTGGCTACTTCG+CGG | 0.563072 | 1_1:+65965167 | Msa0037050:CDS |
| GGCTACTTCGCGGAGTGCAG+GGG | 0.564830 | 1_1:+65965177 | Msa0037050:CDS |
| ATGTACCAAATATAACAGTT+GGG | 0.565063 | 1_1:-65964431 | None:intergenic |
| AGAAAAGGTAGTTACCTGGC+GGG | 0.583997 | 1_1:-65962955 | None:intergenic |
| ATGAGCGACATTATCACAGT+TGG | 0.585291 | 1_1:+65965281 | Msa0037050:three_prime_UTR |
| GGATTCACTCGACTCTGCAA+GGG | 0.585484 | 1_1:+65962856 | Msa0037050:CDS |
| CGTTGAACAAACTGTTCATG+GGG | 0.600069 | 1_1:+65963488 | Msa0037050:CDS |
| TGAGCCAGTATGGGGTCCCA+GGG | 0.605388 | 1_1:+65963660 | Msa0037050:CDS |
| CAGCTCAATTATCTGAGACA+AGG | 0.610943 | 1_1:-65965398 | None:intergenic |
| CGAGGTAGGTGAGAGCGGAA+GGG | 0.618929 | 1_1:-65962924 | None:intergenic |
| AAGTTGCTTGAGCCAGTATG+GGG | 0.623617 | 1_1:+65963652 | Msa0037050:CDS |
| TACCTGTGACTGTGATGAGA+CGG | 0.626766 | 1_1:-65962715 | None:intergenic |
| GGCGGGAATGAGAGCGAGGT+AGG | 0.628802 | 1_1:-65962938 | None:intergenic |
| ACCTGTGACTGTGATGAGAC+GGG | 0.629877 | 1_1:-65962714 | None:intergenic |
| TGTAATGTAGTACAAAGCAA+TGG | 0.632081 | 1_1:-65963743 | None:intergenic |
| ATATTGATTATACAACTGCA+TGG | 0.632517 | 1_1:+65965440 | Msa0037050:three_prime_UTR |
| GAGTTGCAAACAAATGCCGC+AGG | 0.633483 | 1_1:+65965199 | Msa0037050:CDS |
| CCATTGAGGCATCTAGGAGA+CGG | 0.641159 | 1_1:+65964776 | Msa0037050:CDS |
| AGAATGCAAAATCCTCACTT+GGG | 0.648231 | 1_1:-65964515 | None:intergenic |
| ACCTGGCGGGAATGAGAGCG+AGG | 0.651805 | 1_1:-65962942 | None:intergenic |
| GCTTAAGGGTGACCCAAGTG+AGG | 0.669268 | 1_1:+65964503 | Msa0037050:CDS |
| AGGGAATTATACATTTCCTG+CGG | 0.669691 | 1_1:-65965215 | None:intergenic |
| ATATTTCATCGAATGCTCTG+TGG | 0.677191 | 1_1:+65964685 | Msa0037050:CDS |
| AAGAACGTTATCGACTGTGT+CGG | 0.685286 | 1_1:+65962828 | Msa0037050:CDS |
| AAGAAAGGTTGGCTAACGAG+AGG | 0.692597 | 1_1:+65965152 | Msa0037050:CDS |
| GTCTCCTAGATGCCTCAATG+GGG | 0.734529 | 1_1:-65964774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCATAATCTATTAATTAT+TGG | - | chr1_1:65963022-65963041 | None:intergenic | 15.0% |
| !! | TTTAATAATTGTACTAAGTT+GGG | - | chr1_1:65963265-65963284 | None:intergenic | 15.0% |
| !!! | TTTTAATAATTGTACTAAGT+TGG | - | chr1_1:65963266-65963285 | None:intergenic | 15.0% |
| !! | TAAAAACATACTAATGTTAA+TGG | - | chr1_1:65963593-65963612 | None:intergenic | 15.0% |
| !!! | TAACATTAGTATGTTTTTAT+AGG | + | chr1_1:65963594-65963613 | Msa0037050:intron | 15.0% |
| !! | AATATAATCTCATAAAGTAA+TGG | - | chr1_1:65963801-65963820 | None:intergenic | 15.0% |
| !! | GTAAAAAGATATAAAAGAAT+TGG | - | chr1_1:65964101-65964120 | None:intergenic | 15.0% |
| !! | AAATTATAAATTACTACTGT+GGG | + | chr1_1:65964846-65964865 | Msa0037050:intron | 15.0% |
| !! | CAAATTAAAATATTCCTTTA+AGG | - | chr1_1:65965335-65965354 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTGCATGTATT+TGG | + | chr1_1:65965343-65965362 | Msa0037050:three_prime_UTR | 15.0% |
| !! | AGACAAATAAAAGAAAGAAT+TGG | + | chr1_1:65962640-65962659 | Msa0037050:five_prime_UTR | 20.0% |
| !! | GACAAATAAAAGAAAGAATT+GGG | + | chr1_1:65962641-65962660 | Msa0037050:five_prime_UTR | 20.0% |
| !! | TATTGGAAATATGTGATAAA+GGG | - | chr1_1:65963005-65963024 | None:intergenic | 20.0% |
| !! | TTATTGGAAATATGTGATAA+AGG | - | chr1_1:65963006-65963025 | None:intergenic | 20.0% |
| !! | AAGAAAGAAATATGATAAAC+AGG | - | chr1_1:65963859-65963878 | None:intergenic | 20.0% |
| !! | TAAGCTTGTAATAGAAAAAA+TGG | - | chr1_1:65963911-65963930 | None:intergenic | 20.0% |
| !!! | TTTTTCTATTACAAGCTTAA+TGG | + | chr1_1:65963912-65963931 | Msa0037050:intron | 20.0% |
| !!! | ATGACTTGTTTAAAAAACAT+TGG | - | chr1_1:65964001-65964020 | None:intergenic | 20.0% |
| !!! | TTCATTTTTATATTGACGAA+AGG | - | chr1_1:65964222-65964241 | None:intergenic | 20.0% |
| !! | TTTCGTCAATATAAAAATGA+AGG | + | chr1_1:65964221-65964240 | Msa0037050:CDS | 20.0% |
| !!! | TTTAAGGTAAGTTATGATTT+TGG | + | chr1_1:65964557-65964576 | Msa0037050:intron | 20.0% |
| !! | GACATCAGATATAAAAAAAA+AGG | - | chr1_1:65964634-65964653 | None:intergenic | 20.0% |
| !! | CAAATTATAAATTACTACTG+TGG | + | chr1_1:65964845-65964864 | Msa0037050:intron | 20.0% |
| !! | AATTATAAATTACTACTGTG+GGG | + | chr1_1:65964847-65964866 | Msa0037050:intron | 20.0% |
| !! | ATCTGAATTTACAAAATCTA+GGG | - | chr1_1:65965237-65965256 | None:intergenic | 20.0% |
| !! | TATCTGAATTTACAAAATCT+AGG | - | chr1_1:65965238-65965257 | None:intergenic | 20.0% |
| !! | TTTGTAAATTCAGATAAGTT+TGG | + | chr1_1:65965242-65965261 | Msa0037050:three_prime_UTR | 20.0% |
| ! | AATTGAGAATTGCAATTTGT+AGG | + | chr1_1:65962801-65962820 | Msa0037050:intron | 25.0% |
| ! | ATTGAGAATTGCAATTTGTA+GGG | + | chr1_1:65962802-65962821 | Msa0037050:intron | 25.0% |
| ! | TTAGGTATAAGTATAACCAT+TGG | + | chr1_1:65963127-65963146 | Msa0037050:intron | 25.0% |
| ! | ATAATGTTATGAAGACTCAT+AGG | - | chr1_1:65963380-65963399 | None:intergenic | 25.0% |
| !! | ATAGTTTGTCTTCTCTTAAT+TGG | + | chr1_1:65963628-65963647 | Msa0037050:CDS | 25.0% |
| ! | ATGAACTTTATAAATTCCCT+GGG | - | chr1_1:65963679-65963698 | None:intergenic | 25.0% |
| ! | ACATAATGAAAGCTTGAAAT+GGG | - | chr1_1:65963941-65963960 | None:intergenic | 25.0% |
| ! | ATGTACCAAATATAACAGTT+GGG | - | chr1_1:65964434-65964453 | None:intergenic | 25.0% |
| ! | TATGTACCAAATATAACAGT+TGG | - | chr1_1:65964435-65964454 | None:intergenic | 25.0% |
| ! | TAACTTACCTTAAAATCTCT+GGG | - | chr1_1:65964551-65964570 | None:intergenic | 25.0% |
| ! | ATAACTTACCTTAAAATCTC+TGG | - | chr1_1:65964552-65964571 | None:intergenic | 25.0% |
| ! | AAATGGTTTCAGTTAAAGAA+AGG | + | chr1_1:65964953-65964972 | Msa0037050:intron | 25.0% |
| ! | CTCAAATAAACAAGAAAAGA+TGG | - | chr1_1:65965010-65965029 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTGTCCTTAA+AGG | + | chr1_1:65965318-65965337 | Msa0037050:three_prime_UTR | 25.0% |
| !! | ATATTGATTATACAACTGCA+TGG | + | chr1_1:65965440-65965459 | Msa0037050:three_prime_UTR | 25.0% |
| AATTGAAGGTGAGAAAGAAA+AGG | - | chr1_1:65962973-65962992 | None:intergenic | 30.0% | |
| AAGGGAAACATTTGAATTGA+AGG | - | chr1_1:65962987-65963006 | None:intergenic | 30.0% | |
| ACTTATACCTAAGCTAATGA+TGG | - | chr1_1:65963119-65963138 | None:intergenic | 30.0% | |
| ! | CTGTTTTCATATATTGTCAC+CGG | + | chr1_1:65963174-65963193 | Msa0037050:intron | 30.0% |
| ! | AAAGTGTCTGTGTTTATAAG+TGG | + | chr1_1:65963318-65963337 | Msa0037050:intron | 30.0% |
| AAGTGTCTGTGTTTATAAGT+GGG | + | chr1_1:65963319-65963338 | Msa0037050:intron | 30.0% | |
| ! | CATTATTTTCCGTCAATGTA+AGG | + | chr1_1:65963394-65963413 | Msa0037050:intron | 30.0% |
| GATGAACTTTATAAATTCCC+TGG | - | chr1_1:65963680-65963699 | None:intergenic | 30.0% | |
| TGTAATGTAGTACAAAGCAA+TGG | - | chr1_1:65963746-65963765 | None:intergenic | 30.0% | |
| TTTGTACTACATTACAAGAC+AGG | + | chr1_1:65963750-65963769 | Msa0037050:CDS | 30.0% | |
| TTCTATTACAAGCTTAATGG+AGG | + | chr1_1:65963915-65963934 | Msa0037050:intron | 30.0% | |
| CACATAATGAAAGCTTGAAA+TGG | - | chr1_1:65963942-65963961 | None:intergenic | 30.0% | |
| CATTTCAAGCTTTCATTATG+TGG | + | chr1_1:65963940-65963959 | Msa0037050:intron | 30.0% | |
| TCAACACTAGAAAACATTGT+TGG | + | chr1_1:65963975-65963994 | Msa0037050:intron | 30.0% | |
| ATTAATGTGCATTGTGCAAT+TGG | - | chr1_1:65964078-65964097 | None:intergenic | 30.0% | |
| AAGCAATGAGTTACAAGTTA+AGG | - | chr1_1:65964267-65964286 | None:intergenic | 30.0% | |
| ATTTACTTCACAGCAACAAT+AGG | + | chr1_1:65964288-65964307 | Msa0037050:intron | 30.0% | |
| TATCTCCCAACTGTTATATT+TGG | + | chr1_1:65964426-65964445 | Msa0037050:CDS | 30.0% | |
| TATTTGGTACATATATGAGC+TGG | + | chr1_1:65964442-65964461 | Msa0037050:CDS | 30.0% | |
| ! | CATTTTTCCCAGAGATTTTA+AGG | + | chr1_1:65964541-65964560 | Msa0037050:CDS | 30.0% |
| AAGTTGCTCAGAATAACTAA+AGG | - | chr1_1:65964608-65964627 | None:intergenic | 30.0% | |
| CGATGAAATATTGATGCAAT+AGG | - | chr1_1:65964676-65964695 | None:intergenic | 30.0% | |
| ! | TGAATTAAAAGCGCAGAAAA+GGG | - | chr1_1:65964808-65964827 | None:intergenic | 30.0% |
| !! | AATTTGCTATATGCTCAACT+AGG | - | chr1_1:65964831-65964850 | None:intergenic | 30.0% |
| AGAAAGATAATAGAAGTTGC+AGG | + | chr1_1:65964892-65964911 | Msa0037050:intron | 30.0% | |
| !!! | GAAACTTTTTTTTGCTGTGA+TGG | + | chr1_1:65964918-65964937 | Msa0037050:intron | 30.0% |
| TATTACAACAATGCTATGAC+AGG | - | chr1_1:65965060-65965079 | None:intergenic | 30.0% | |
| ATTGCTTATCGATCCAATAT+TGG | + | chr1_1:65965480-65965499 | Msa0037050:three_prime_UTR | 30.0% | |
| TCATTCTTGACATCCAATAT+TGG | - | chr1_1:65965496-65965515 | None:intergenic | 30.0% | |
| AGAAAGAAAAGGTAGTTACC+TGG | - | chr1_1:65962962-65962981 | None:intergenic | 35.0% | |
| CAATATATGAAAACAGGAGC+AGG | - | chr1_1:65963170-65963189 | None:intergenic | 35.0% | |
| CGGTGACAATATATGAAAAC+AGG | - | chr1_1:65963176-65963195 | None:intergenic | 35.0% | |
| AGTGTCTGTGTTTATAAGTG+GGG | + | chr1_1:65963320-65963339 | Msa0037050:intron | 35.0% | |
| ATGAAGACTCATAGGAATTG+TGG | - | chr1_1:65963372-65963391 | None:intergenic | 35.0% | |
| ! | AACAGTTTGTTCAACGTAAC+CGG | - | chr1_1:65963484-65963503 | None:intergenic | 35.0% |
| TACGTTGAACAAACTGTTCA+TGG | + | chr1_1:65963486-65963505 | Msa0037050:CDS | 35.0% | |
| ACGTTGAACAAACTGTTCAT+GGG | + | chr1_1:65963487-65963506 | Msa0037050:CDS | 35.0% | |
| GTATAGCTAGAACATTGCAA+AGG | - | chr1_1:65964123-65964142 | None:intergenic | 35.0% | |
| GAGTTACAAGTTAAGGAACA+AGG | - | chr1_1:65964260-65964279 | None:intergenic | 35.0% | |
| GAGACATGGCACAATATTTA+GGG | - | chr1_1:65964328-65964347 | None:intergenic | 35.0% | |
| AGAGACATGGCACAATATTT+AGG | - | chr1_1:65964329-65964348 | None:intergenic | 35.0% | |
| GAACACAATAAAGCGATAGA+TGG | - | chr1_1:65964369-65964388 | None:intergenic | 35.0% | |
| AGAATGCAAAATCCTCACTT+GGG | - | chr1_1:65964518-65964537 | None:intergenic | 35.0% | |
| GATGCAATAGGATCTATTAC+TGG | - | chr1_1:65964664-65964683 | None:intergenic | 35.0% | |
| ATATTTCATCGAATGCTCTG+TGG | + | chr1_1:65964685-65964704 | Msa0037050:CDS | 35.0% | |
| ! | GTGAATTAAAAGCGCAGAAA+AGG | - | chr1_1:65964809-65964828 | None:intergenic | 35.0% |
| CAAGAGAAAAGTAGTCACAA+TGG | - | chr1_1:65965106-65965125 | None:intergenic | 35.0% | |
| ! | CTTTTCTCTTGTAGAGAAAG+AGG | + | chr1_1:65965115-65965134 | Msa0037050:intron | 35.0% |
| AGGGAATTATACATTTCCTG+CGG | - | chr1_1:65965218-65965237 | None:intergenic | 35.0% | |
| CGCTCATGATAGTTTCATAT+TGG | - | chr1_1:65965268-65965287 | None:intergenic | 35.0% | |
| TGATTATACAACTGCATGGA+AGG | + | chr1_1:65965444-65965463 | Msa0037050:three_prime_UTR | 35.0% | |
| ! | AAGAACGTTATCGACTGTGT+CGG | + | chr1_1:65962828-65962847 | Msa0037050:CDS | 40.0% |
| AAGAAAAGGTAGTTACCTGG+CGG | - | chr1_1:65962959-65962978 | None:intergenic | 40.0% | |
| ! | ATTGCTGCCATCATTAGCTT+AGG | + | chr1_1:65963109-65963128 | Msa0037050:intron | 40.0% |
| TGTGGCTTATGTAATGCCAA+TGG | - | chr1_1:65963146-65963165 | None:intergenic | 40.0% | |
| TCCACTTGTCAGTGTTTCAT+AGG | + | chr1_1:65963199-65963218 | Msa0037050:intron | 40.0% | |
| ACCTATGAAACACTGACAAG+TGG | - | chr1_1:65963203-65963222 | None:intergenic | 40.0% | |
| TTGTCAGTGTTTCATAGGTG+TGG | + | chr1_1:65963204-65963223 | Msa0037050:intron | 40.0% | |
| TGTCAGTGTTTCATAGGTGT+GGG | + | chr1_1:65963205-65963224 | Msa0037050:intron | 40.0% | |
| ! | TGTACTAAGTTGGGAGTGAA+AGG | - | chr1_1:65963256-65963275 | None:intergenic | 40.0% |
| GTGTCTGTGTTTATAAGTGG+GGG | + | chr1_1:65963321-65963340 | Msa0037050:intron | 40.0% | |
| GACTCATAGGAATTGTGGTT+GGG | - | chr1_1:65963367-65963386 | None:intergenic | 40.0% | |
| AGACTCATAGGAATTGTGGT+TGG | - | chr1_1:65963368-65963387 | None:intergenic | 40.0% | |
| !! | AGGAAAGCACCTTACATTGA+CGG | - | chr1_1:65963406-65963425 | None:intergenic | 40.0% |
| CAACATGAAACCAACAGGAA+AGG | - | chr1_1:65963426-65963445 | None:intergenic | 40.0% | |
| CGTTGAACAAACTGTTCATG+GGG | + | chr1_1:65963488-65963507 | Msa0037050:CDS | 40.0% | |
| TGAAGCAACAGATAGATCTC+AGG | - | chr1_1:65963558-65963577 | None:intergenic | 40.0% | |
| ! | GAGATCTATCTGTTGCTTCA+AGG | + | chr1_1:65963558-65963577 | Msa0037050:intron | 40.0% |
| GAGTTTCAAAGTGAAGTGCA+AGG | - | chr1_1:65963889-65963908 | None:intergenic | 40.0% | |
| ACTCCATGAAATCCAGAAAG+TGG | - | chr1_1:65964147-65964166 | None:intergenic | 40.0% | |
| GGATTTCATGGAGTGATATC+TGG | + | chr1_1:65964153-65964172 | Msa0037050:CDS | 40.0% | |
| CACTGAACAGAAAAGAGACA+TGG | - | chr1_1:65964342-65964361 | None:intergenic | 40.0% | |
| ! | CATGTCTCTTTTCTGTTCAG+TGG | + | chr1_1:65964340-65964359 | Msa0037050:intron | 40.0% |
| ! | GTTCTATTGTTCTGAGCTTC+TGG | + | chr1_1:65964385-65964404 | Msa0037050:CDS | 40.0% |
| TCTGAGCTTCTGGATAATAG+AGG | + | chr1_1:65964395-65964414 | Msa0037050:CDS | 40.0% | |
| AAGCCGGAAACAAAGCTTAA+GGG | + | chr1_1:65964489-65964508 | Msa0037050:CDS | 40.0% | |
| !! | TCACCCTTAAGCTTTGTTTC+CGG | - | chr1_1:65964495-65964514 | None:intergenic | 40.0% |
| GAGAATGCAAAATCCTCACT+TGG | - | chr1_1:65964519-65964538 | None:intergenic | 40.0% | |
| ! | AGGATCTATTACTGGTCTAC+AGG | - | chr1_1:65964656-65964675 | None:intergenic | 40.0% |
| GATGCTGAAGATTACGATCT+TGG | + | chr1_1:65964727-65964746 | Msa0037050:CDS | 40.0% | |
| ! | GATGGTTGCTTGATGGTAAA+TGG | + | chr1_1:65964936-65964955 | Msa0037050:intron | 40.0% |
| ATGAGCGACATTATCACAGT+TGG | + | chr1_1:65965281-65965300 | Msa0037050:three_prime_UTR | 40.0% | |
| ! | CAGCTCAATTATCTGAGACA+AGG | - | chr1_1:65965401-65965420 | None:intergenic | 40.0% |
| GATCATCATCATCATCGTCG+TGG | + | chr1_1:65962606-65962625 | Msa0037050:five_prime_UTR | 45.0% | |
| TACCTGTGACTGTGATGAGA+CGG | - | chr1_1:65962718-65962737 | None:intergenic | 45.0% | |
| AGAAAAGGTAGTTACCTGGC+GGG | - | chr1_1:65962958-65962977 | None:intergenic | 45.0% | |
| ATGAAAACAGGAGCAGGTTG+TGG | - | chr1_1:65963164-65963183 | None:intergenic | 45.0% | |
| AAACACTGACAAGTGGACAC+CGG | - | chr1_1:65963196-65963215 | None:intergenic | 45.0% | |
| GTTTATAAGTGGGGGATTCG+TGG | + | chr1_1:65963329-65963348 | Msa0037050:intron | 45.0% | |
| ! | AAGGTGCTTTCCTTTCCTGT+TGG | + | chr1_1:65963413-65963432 | Msa0037050:intron | 45.0% |
| !! | TCCTGTTGGTTTCATGTTGC+AGG | + | chr1_1:65963427-65963446 | Msa0037050:intron | 45.0% |
| TCCTGCAACATGAAACCAAC+AGG | - | chr1_1:65963431-65963450 | None:intergenic | 45.0% | |
| GTAATGAGGTTCCAGGCAAA+TGG | - | chr1_1:65963459-65963478 | None:intergenic | 45.0% | |
| CAAGTTGCTTGAGCCAGTAT+GGG | + | chr1_1:65963651-65963670 | Msa0037050:CDS | 45.0% | |
| AAGTTGCTTGAGCCAGTATG+GGG | + | chr1_1:65963652-65963671 | Msa0037050:CDS | 45.0% | |
| CAAAGTGAAGTGCAAGGTCT+GGG | - | chr1_1:65963883-65963902 | None:intergenic | 45.0% | |
| TCAAAGTGAAGTGCAAGGTC+TGG | - | chr1_1:65963884-65963903 | None:intergenic | 45.0% | |
| ! | TCTAGCTATACGCCACTTTC+TGG | + | chr1_1:65964132-65964151 | Msa0037050:intron | 45.0% |
| ! | ACGCCACTTTCTGGATTTCA+TGG | + | chr1_1:65964141-65964160 | Msa0037050:CDS | 45.0% |
| ! | TGGAGTGATATCTGGCTTCT+TGG | + | chr1_1:65964161-65964180 | Msa0037050:CDS | 45.0% |
| ACGAAAGGAAGCTCTTGATC+TGG | - | chr1_1:65964207-65964226 | None:intergenic | 45.0% | |
| GCTGGATTTACCTGAGATAC+TGG | + | chr1_1:65964460-65964479 | Msa0037050:CDS | 45.0% | |
| GAAGCCGGAAACAAAGCTTA+AGG | + | chr1_1:65964488-65964507 | Msa0037050:CDS | 45.0% | |
| CTTGGAAGTGAACATTTGCC+AGG | + | chr1_1:65964745-65964764 | Msa0037050:CDS | 45.0% | |
| TTGCTGTGATGGTTGCTTGA+TGG | + | chr1_1:65964929-65964948 | Msa0037050:intron | 45.0% | |
| ! | AAGAAAGGTTGGCTAACGAG+AGG | + | chr1_1:65965152-65965171 | Msa0037050:CDS | 45.0% |
| GACTGTGATCTTCATGTGAG+TGG | + | chr1_1:65965365-65965384 | Msa0037050:three_prime_UTR | 45.0% | |
| TGTGATGAGACGGGAAGAGA+AGG | - | chr1_1:65962708-65962727 | None:intergenic | 50.0% | |
| ACCTGTGACTGTGATGAGAC+GGG | - | chr1_1:65962717-65962736 | None:intergenic | 50.0% | |
| ! | TTATCGACTGTGTCGGTGTC+TGG | + | chr1_1:65962835-65962854 | Msa0037050:CDS | 50.0% |
| TGGATTCACTCGACTCTGCA+AGG | + | chr1_1:65962855-65962874 | Msa0037050:CDS | 50.0% | |
| GGATTCACTCGACTCTGCAA+GGG | + | chr1_1:65962856-65962875 | Msa0037050:CDS | 50.0% | |
| CAGTGTTTCATAGGTGTGGG+TGG | + | chr1_1:65963208-65963227 | Msa0037050:intron | 50.0% | |
| TTTCATAGGTGTGGGTGGAG+TGG | + | chr1_1:65963213-65963232 | Msa0037050:intron | 50.0% | |
| GCAGGACAATACCATTTGCC+TGG | + | chr1_1:65963445-65963464 | Msa0037050:intron | 50.0% | |
| CAACGTAACCGGCTGTAATG+AGG | - | chr1_1:65963473-65963492 | None:intergenic | 50.0% | |
| GCAAGTTGCTTGAGCCAGTA+TGG | + | chr1_1:65963650-65963669 | Msa0037050:CDS | 50.0% | |
| GCTTCTTCTGCCAGTATCTC+AGG | - | chr1_1:65964473-65964492 | None:intergenic | 50.0% | |
| GAGATACTGGCAGAAGAAGC+CGG | + | chr1_1:65964473-65964492 | Msa0037050:CDS | 50.0% | |
| GTCTCCTAGATGCCTCAATG+GGG | - | chr1_1:65964777-65964796 | None:intergenic | 50.0% | |
| CGTCTCCTAGATGCCTCAAT+GGG | - | chr1_1:65964778-65964797 | None:intergenic | 50.0% | |
| ! | CCATTGAGGCATCTAGGAGA+CGG | + | chr1_1:65964776-65964795 | Msa0037050:CDS | 50.0% |
| CAACCTTTCTTCCAGTGCTC+GGG | - | chr1_1:65965143-65965162 | None:intergenic | 50.0% | |
| CCAACCTTTCTTCCAGTGCT+CGG | - | chr1_1:65965144-65965163 | None:intergenic | 50.0% | |
| ! | AAGGTTGGCTAACGAGAGGT+TGG | + | chr1_1:65965156-65965175 | Msa0037050:CDS | 50.0% |
| GAGTTGCAAACAAATGCCGC+AGG | + | chr1_1:65965199-65965218 | Msa0037050:CDS | 50.0% | |
| TCCCGTCTCATCACAGTCAC+AGG | + | chr1_1:65962713-65962732 | Msa0037050:CDS | 55.0% | |
| !! | GGGATTCGTGGTGTTGCGTT+AGG | + | chr1_1:65963341-65963360 | Msa0037050:intron | 55.0% |
| GCCTGGAACCTCATTACAGC+CGG | + | chr1_1:65963462-65963481 | Msa0037050:CDS | 55.0% | |
| ACCGGCTGTAATGAGGTTCC+AGG | - | chr1_1:65963466-65963485 | None:intergenic | 55.0% | |
| AATTCCCTGGGACCCCATAC+TGG | - | chr1_1:65963667-65963686 | None:intergenic | 55.0% | |
| GCTTAAGGGTGACCCAAGTG+AGG | + | chr1_1:65964503-65964522 | Msa0037050:CDS | 55.0% | |
| ! | CTGACCCCATTGAGGCATCT+AGG | + | chr1_1:65964770-65964789 | Msa0037050:CDS | 55.0% |
| CCGTCTCCTAGATGCCTCAA+TGG | - | chr1_1:65964779-65964798 | None:intergenic | 55.0% | |
| !! | CCGAGCACTGGAAGAAAGGT+TGG | + | chr1_1:65965141-65965160 | Msa0037050:CDS | 55.0% |
| ! | ACGAGAGGTTGGCTACTTCG+CGG | + | chr1_1:65965167-65965186 | Msa0037050:CDS | 55.0% |
| CGAGGTAGGTGAGAGCGGAA+GGG | - | chr1_1:65962927-65962946 | None:intergenic | 60.0% | |
| GAGAGCGAGGTAGGTGAGAG+CGG | - | chr1_1:65962932-65962951 | None:intergenic | 60.0% | |
| TTGAGCCAGTATGGGGTCCC+AGG | + | chr1_1:65963659-65963678 | Msa0037050:CDS | 60.0% | |
| TGAGCCAGTATGGGGTCCCA+GGG | + | chr1_1:65963660-65963679 | Msa0037050:CDS | 60.0% | |
| ! | GCCAGGTTCTGACCCCATTG+AGG | + | chr1_1:65964762-65964781 | Msa0037050:CDS | 60.0% |
| GCCTCAATGGGGTCAGAACC+TGG | - | chr1_1:65964766-65964785 | None:intergenic | 60.0% | |
| !! | AGAAAGAGGTGCCCGAGCAC+TGG | + | chr1_1:65965129-65965148 | Msa0037050:CDS | 60.0% |
| !! | GTGCCCGAGCACTGGAAGAA+AGG | + | chr1_1:65965137-65965156 | Msa0037050:CDS | 60.0% |
| TTGGCTACTTCGCGGAGTGC+AGG | + | chr1_1:65965175-65965194 | Msa0037050:CDS | 60.0% | |
| TGGCTACTTCGCGGAGTGCA+GGG | + | chr1_1:65965176-65965195 | Msa0037050:CDS | 60.0% | |
| GCGAGGTAGGTGAGAGCGGA+AGG | - | chr1_1:65962928-65962947 | None:intergenic | 65.0% | |
| GGCGGGAATGAGAGCGAGGT+AGG | - | chr1_1:65962941-65962960 | None:intergenic | 65.0% | |
| ACCTCGCTCTCATTCCCGCC+AGG | + | chr1_1:65962941-65962960 | Msa0037050:CDS | 65.0% | |
| ACCTGGCGGGAATGAGAGCG+AGG | - | chr1_1:65962945-65962964 | None:intergenic | 65.0% | |
| GGCTACTTCGCGGAGTGCAG+GGG | + | chr1_1:65965177-65965196 | Msa0037050:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65962577 | 65965531 | 65962577 | ID=Msa0037050;Name=Msa0037050 |
| chr1_1 | mRNA | 65962577 | 65965531 | 65962577 | ID=Msa0037050-mRNA-1;Parent=Msa0037050;Name=Msa0037050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|1|1|1|1|1|8|300|318 |
| chr1_1 | exon | 65962577 | 65962734 | 65962577 | ID=Msa0037050-mRNA-1:exon:21271;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65962823 | 65962962 | 65962823 | ID=Msa0037050-mRNA-1:exon:21272;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65963449 | 65963509 | 65963449 | ID=Msa0037050-mRNA-1:exon:21273;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65963616 | 65963782 | 65963616 | ID=Msa0037050-mRNA-1:exon:21274;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65964137 | 65964242 | 65964137 | ID=Msa0037050-mRNA-1:exon:21275;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65964360 | 65964562 | 65964360 | ID=Msa0037050-mRNA-1:exon:21276;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65964660 | 65964797 | 65964660 | ID=Msa0037050-mRNA-1:exon:21277;Parent=Msa0037050-mRNA-1 |
| chr1_1 | exon | 65965129 | 65965531 | 65965129 | ID=Msa0037050-mRNA-1:exon:21278;Parent=Msa0037050-mRNA-1 |
| chr1_1 | five_prime_UTR | 65962577 | 65962695 | 65962577 | ID=Msa0037050-mRNA-1:five_prime_utr;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65962696 | 65962734 | 65962696 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65962823 | 65962962 | 65962823 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65963449 | 65963509 | 65963449 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65963616 | 65963782 | 65963616 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65964137 | 65964242 | 65964137 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65964360 | 65964562 | 65964360 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65964660 | 65964797 | 65964660 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | CDS | 65965129 | 65965231 | 65965129 | ID=Msa0037050-mRNA-1:cds;Parent=Msa0037050-mRNA-1 |
| chr1_1 | three_prime_UTR | 65965232 | 65965531 | 65965232 | ID=Msa0037050-mRNA-1:three_prime_utr;Parent=Msa0037050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
