AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0773960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773960 MtrunA17_Chr5g0428001 99.211 507 4 0 1 507 1 507 0.0 1046
Msa0773960 MtrunA17_Chr5g0411661 83.430 519 71 2 1 507 3 518 0.0 892
Msa0773960 MtrunA17_Chr2g0285171 59.211 456 173 3 45 497 87 532 0.0 564
Msa0773960 MtrunA17_Chr8g0378091 58.120 468 187 5 42 506 9 470 0.0 554
Msa0773960 MtrunA17_Chr3g0121851 57.692 468 189 5 42 506 9 470 0.0 548
Msa0773960 MtrunA17_Chr2g0277581 53.004 466 207 5 42 500 133 593 1.92e-170 493
Msa0773960 MtrunA17_Chr3g0115291 52.371 464 206 5 42 498 120 575 4.04e-168 487
Msa0773960 MtrunA17_Chr7g0268951 62.286 175 66 0 70 244 1 175 5.07e-74 232
Msa0773960 MtrunA17_Chr1g0186271 36.446 332 153 7 160 490 10 284 8.01e-54 183
Msa0773960 MtrunA17_Chr7g0268941 45.695 151 81 1 349 498 16 166 4.08e-37 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0773960 AT5G26780.1 83.172 517 77 2 1 507 1 517 0.0 896
Msa0773960 AT5G26780.4 83.172 517 77 2 1 507 1 517 0.0 896
Msa0773960 AT4G37930.1 84.047 514 74 2 1 506 3 516 0.0 892
Msa0773960 AT5G26780.2 80.863 533 76 3 1 507 1 533 0.0 888
Msa0773960 AT5G26780.3 80.863 533 76 3 1 507 1 533 0.0 888
Msa0773960 AT4G32520.2 61.233 454 167 3 45 497 83 528 0.0 585
Msa0773960 AT4G32520.1 61.233 454 167 3 45 497 83 528 0.0 585
Msa0773960 AT4G13930.1 57.906 468 188 5 42 506 9 470 0.0 544
Msa0773960 AT4G13890.1 56.061 462 194 5 42 500 9 464 0.0 522
Msa0773960 AT4G13890.2 59.375 384 152 3 42 422 9 391 2.24e-165 474
Msa0773960 AT1G22020.2 49.893 467 220 5 42 500 139 599 2.02e-161 471
Msa0773960 AT1G22020.1 49.893 467 220 5 42 500 139 599 2.02e-161 471
Msa0773960 AT1G36370.1 50.870 460 212 5 42 493 135 588 3.84e-161 470

Find 145 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAATAGATATTAATTATT+TGG 0.165019 5_2:-49382123 Msa0773960:three_prime_UTR
AGTTACTAAGAACTTGTTTC+TGG 0.199826 5_2:+49383724 None:intergenic
GCACCGGCAACTATTAATTT+TGG 0.206093 5_2:+49385321 None:intergenic
CAAAATAGCCTTACAAATTA+AGG 0.250232 5_2:-49382577 Msa0773960:CDS
AAGCGTGCATTGGAAGCTTT+TGG 0.259016 5_2:-49389961 Msa0773960:CDS
GGCAGTTATGTTGGCTGATA+TGG 0.263270 5_2:-49385142 Msa0773960:CDS
GTCAATGTGCAGTCATTATC+TGG 0.297729 5_2:-49388371 Msa0773960:CDS
CATACGGAGTTAGTTTCTTT+TGG 0.307828 5_2:-49382299 Msa0773960:three_prime_UTR
AGAAAATGATAAACCATATA+TGG 0.314464 5_2:+49382155 None:intergenic
TTCTGGTAATTCTTGAATTC+CGG 0.322524 5_2:+49383741 None:intergenic
TCCATTTGACAGGGCATTGA+TGG 0.325277 5_2:-49382863 Msa0773960:intron
ATATGATAATAAACCATATA+TGG 0.335365 5_2:-49382168 Msa0773960:three_prime_UTR
TGTGTGGGTATATTATTATA+TGG 0.340946 5_2:+49390733 None:intergenic
TAGCATAACCTTCTACTTCA+TGG 0.350871 5_2:+49382381 None:intergenic
CCTCACAATCACACTATTAC+AGG 0.355329 5_2:-49383948 Msa0773960:CDS
GCTAAGCAATTTCCCACAAT+TGG 0.366785 5_2:-49382362 Msa0773960:CDS
AGGCCAAAATTAATAGTTGC+CGG 0.371671 5_2:-49385324 Msa0773960:CDS
GAACTCCTGCTCTTACATCT+AGG 0.374148 5_2:-49382653 Msa0773960:CDS
GAAACCTCATGAGAGAATTA+TGG 0.376002 5_2:-49388312 Msa0773960:CDS
ACTAATAGTCAATCTGAGTT+TGG 0.391958 5_2:+49381884 None:intergenic
GATGTGTCTGCAATGGTTCC+TGG 0.395208 5_2:-49382776 Msa0773960:CDS
TGGCCATTGTGATTTGTGTT+TGG 0.396454 5_2:+49390688 None:intergenic
AGATACAGCTGATATCTTCT+TGG 0.397878 5_2:+49387270 None:intergenic
GAGAGAAGTTGGTTTGTTGA+TGG 0.399841 5_2:+49390641 None:intergenic
TATCCTGGTGCTAGATACTA+TGG 0.403377 5_2:-49390124 Msa0773960:CDS
ATTATATGGGTTGGCGGTAG+TGG 0.406463 5_2:+49390747 None:intergenic
CTCTATCTCAAAACCAATTG+TGG 0.418208 5_2:+49382349 None:intergenic
TCGATTATATCTTCGATCTC+AGG 0.425038 5_2:+49390345 None:intergenic
CAAATTAAGGAAAATTCTAA+AGG 0.428238 5_2:-49382564 Msa0773960:intron
AAATATTCGTACTCTGGTCT+TGG 0.431656 5_2:-49382246 Msa0773960:three_prime_UTR
TGGGTTGGATCCAACACAAT+GGG 0.433045 5_2:-49389941 Msa0773960:CDS
GTGGGGCTATGATATTCTTC+AGG 0.434783 5_2:-49385020 Msa0773960:CDS
GCATCTATCACATGGATATC+AGG 0.439763 5_2:-49388267 Msa0773960:intron
TCTTTGAAACAATGCCATAC+AGG 0.439854 5_2:-49387243 Msa0773960:CDS
GTGTAAACTTGGAAGTTAGA+AGG 0.444272 5_2:+49388344 None:intergenic
GTGTGGGTATATTATTATAT+GGG 0.455358 5_2:+49390734 None:intergenic
TCAATAAAGCAGTGTAAACT+TGG 0.458750 5_2:+49388333 None:intergenic
TGGTGAATTGCGTTGGAGGT+TGG 0.463633 5_2:+49390708 None:intergenic
AGAATGGTCAGGTGCAGAAA+AGG 0.464733 5_2:-49382199 Msa0773960:three_prime_UTR
CTTAGCAGTTGCATTGAAGC+AGG 0.467847 5_2:-49383925 Msa0773960:intron
AACTCCTGCTCTTACATCTA+GGG 0.470086 5_2:-49382652 Msa0773960:CDS
ACCATTGCAGACACATCTCC+TGG 0.470380 5_2:+49382782 None:intergenic
TATGTACCTCCCCATTGTGT+TGG 0.472134 5_2:+49389931 None:intergenic
AAATTCAGGCACAAAGTTGA+AGG 0.472831 5_2:-49382462 Msa0773960:intron
CTACGAAGACAAGATAAATC+AGG 0.475699 5_2:-49383997 Msa0773960:CDS
GATCTCTGCCATGAAGTAGA+AGG 0.480347 5_2:-49382389 Msa0773960:CDS
GCGTTGGAGGTTGGTGTGTG+TGG 0.481655 5_2:+49390717 None:intergenic
TGAAAGAGATAAACAAGAAA+GGG 0.482029 5_2:-49384990 Msa0773960:CDS
TTAAGTTTACCAACACCAAA+TGG 0.482107 5_2:+49383498 None:intergenic
ACAACATCTGCATAATCAAA+AGG 0.483389 5_2:+49385078 None:intergenic
GGGTATATTATTATATGGGT+TGG 0.485559 5_2:+49390738 None:intergenic
TGAGGACCACCTTGAAGTCC+AGG 0.488890 5_2:+49383966 None:intergenic
ACCAAGCGATAGAGAGAAGT+TGG 0.494543 5_2:+49390630 None:intergenic
CGTTGGAGGTTGGTGTGTGT+GGG 0.494642 5_2:+49390718 None:intergenic
ATGTCGCCCATGGCTTAGCT+AGG 0.494959 5_2:+49381987 None:intergenic
AAATACAGTGAAGGTTATCC+TGG 0.496861 5_2:-49390139 Msa0773960:CDS
TGTTTGGTGAATTGCGTTGG+AGG 0.498499 5_2:+49390704 None:intergenic
GACAGGGCATTGATGGCTCA+AGG 0.507726 5_2:-49382856 Msa0773960:intron
AAAGGCTATGACCTTGTATC+GGG 0.507829 5_2:-49383533 Msa0773960:CDS
GTGCTCTCATCCAACCTGTA+TGG 0.509528 5_2:+49387229 None:intergenic
AAAATAGAGTTAATACAAGA+TGG 0.509866 5_2:-49382052 Msa0773960:three_prime_UTR
CTGCAGAGCTTGTTAGAGAA+AGG 0.512827 5_2:-49383551 Msa0773960:intron
AGAAGTTGGTTTGTTGATGG+TGG 0.517830 5_2:+49390644 None:intergenic
AGTCACTTCGTGGGCCACGT+GGG 0.521577 5_2:-49385038 Msa0773960:CDS
CTGAAAGAGATAAACAAGAA+AGG 0.522116 5_2:-49384991 Msa0773960:CDS
GAAAGGCTATGACCTTGTAT+CGG 0.522373 5_2:-49383534 Msa0773960:CDS
TCTATCTCAAAACCAATTGT+GGG 0.524634 5_2:+49382350 None:intergenic
ATCAGTGGATTAGTTGCTGC+AGG 0.524776 5_2:-49385114 Msa0773960:CDS
AAACAACTCAACGATCCTCT+TGG 0.526204 5_2:-49390378 Msa0773960:CDS
ACCAACTTCTCTCTATCGCT+TGG 0.526527 5_2:-49390631 Msa0773960:intron
TCTCAGTTCCACCCGATACA+AGG 0.528246 5_2:+49383522 None:intergenic
GTTCATGTAGGCTATGACAC+CGG 0.530615 5_2:-49383760 Msa0773960:intron
TATATTATTATATGGGTTGG+CGG 0.531677 5_2:+49390741 None:intergenic
TTGACTCCCTAGCTAAGCCA+TGG 0.535981 5_2:-49381994 Msa0773960:three_prime_UTR
CAACGATCCTCTTGGTGTAG+TGG 0.537096 5_2:-49390370 Msa0773960:CDS
TGATTATGCGCGTATTCGCA+AGG 0.537140 5_2:-49385277 Msa0773960:intron
TGCTGAAAATATTCGTACTC+TGG 0.538305 5_2:-49382252 Msa0773960:three_prime_UTR
GCACTATTATTAACATGTGT+AGG 0.538606 5_2:+49381906 None:intergenic
GAATGGTCAGGTGCAGAAAA+GGG 0.542321 5_2:-49382198 Msa0773960:three_prime_UTR
TTTGTGTCAGAAGCGTGCAT+TGG 0.545541 5_2:-49389971 Msa0773960:CDS
ATGTGATAGATGCCCACCAT+GGG 0.548654 5_2:+49388277 None:intergenic
GGGTGGAACTGAGAACCATT+TGG 0.548760 5_2:-49383513 Msa0773960:CDS
GTTCCTGGAGGGATCAGAAT+GGG 0.551642 5_2:-49382761 Msa0773960:intron
TTGTGTTTGGTGAATTGCGT+TGG 0.551693 5_2:+49390701 None:intergenic
TGATGGCTCAAGGGTTGAGA+AGG 0.551974 5_2:-49382846 Msa0773960:CDS
CCACCATAGTATCTAGCACC+AGG 0.554761 5_2:+49390121 None:intergenic
GGCTATGATATTCTTCAGGA+AGG 0.554841 5_2:-49385016 Msa0773960:CDS
GTACCCATTCTGATCCCTCC+AGG 0.555025 5_2:+49382758 None:intergenic
TAAACAGAAGGCAGTTATGT+TGG 0.561749 5_2:-49385151 Msa0773960:CDS
TGAAACAATGCCATACAGGT+TGG 0.563831 5_2:-49387239 Msa0773960:CDS
TTGTCGGTGATGCAAGCTGT+TGG 0.566801 5_2:-49390178 Msa0773960:CDS
GGCTATGACCTTGTATCGGG+TGG 0.566903 5_2:-49383530 Msa0773960:CDS
AGAGATAAACAAGAAAGGGC+AGG 0.567037 5_2:-49384986 Msa0773960:CDS
ACAACACATAAGTCACTTCG+TGG 0.573831 5_2:-49385048 Msa0773960:CDS
GGAACGTGAGTGAGCGTGGT+TGG 0.575356 5_2:+49390768 None:intergenic
CATGGTGGGCATCTATCACA+TGG 0.576511 5_2:-49388275 Msa0773960:CDS
AACACAAATCACAATGGCCA+TGG 0.577099 5_2:-49390685 Msa0773960:exon
AAGTCACTTCGTGGGCCACG+TGG 0.581045 5_2:-49385039 Msa0773960:CDS
TACAGGTTGGATGAGAGCAC+TGG 0.582002 5_2:-49387226 Msa0773960:CDS
GGTTCCTGGAGGGATCAGAA+TGG 0.584524 5_2:-49382762 Msa0773960:CDS
GCTGATATGGCACACATCAG+TGG 0.589350 5_2:-49385129 Msa0773960:CDS
ACGAAGTGACTTATGTGTTG+TGG 0.593438 5_2:+49385050 None:intergenic
TAACTCCTCGACATTTGCAC+AGG 0.594690 5_2:-49383706 Msa0773960:intron
ACAGGGCATTGATGGCTCAA+GGG 0.594853 5_2:-49382855 Msa0773960:intron
TCTGCATAATCAAAAGGAGA+AGG 0.596550 5_2:+49385084 None:intergenic
GTCACTTCGTGGGCCACGTG+GGG 0.596633 5_2:-49385037 Msa0773960:CDS
TACGCGCATAATCATAAAGA+CGG 0.597101 5_2:+49385286 None:intergenic
ACGTGAGTGAGCGTGGTTGG+TGG 0.600429 5_2:+49390771 None:intergenic
TTAGGTCTGTGATAAACAGA+AGG 0.603056 5_2:-49385163 Msa0773960:intron
TAAGAAGTGAAGATGACATA+CGG 0.604004 5_2:-49382315 Msa0773960:exon
TTGGGTTGGATCCAACACAA+TGG 0.608804 5_2:-49389942 Msa0773960:CDS
AACTGAGAACCATTTGGTGT+TGG 0.610815 5_2:-49383507 Msa0773960:CDS
TGTCGCCCATGGCTTAGCTA+GGG 0.611420 5_2:+49381988 None:intergenic
ACGCGCATAATCATAAAGAC+GGG 0.612584 5_2:+49385287 None:intergenic
ACTCCTGCTCTTACATCTAG+GGG 0.614414 5_2:-49382651 Msa0773960:CDS
TCCAGGAGATGTGTCTGCAA+TGG 0.614881 5_2:-49382783 Msa0773960:CDS
AAACCCCTAGATGTAAGAGC+AGG 0.616006 5_2:+49382648 None:intergenic
CAAGCAAATTATGTCGCCCA+TGG 0.616897 5_2:+49381977 None:intergenic
AGTGCCATAATTCTCTCATG+AGG 0.623699 5_2:+49388308 None:intergenic
ACGGGCATAAGCACTAGCAC+CGG 0.623924 5_2:+49385305 None:intergenic
CATGTGATAGATGCCCACCA+TGG 0.624147 5_2:+49388276 None:intergenic
TGACTCCCTAGCTAAGCCAT+GGG 0.628658 5_2:-49381993 Msa0773960:three_prime_UTR
GTTTACCTGTGCAAATGTCG+AGG 0.632815 5_2:+49383701 None:intergenic
ATGACGAATAAATACAGTGA+AGG 0.634321 5_2:-49390148 Msa0773960:CDS
TAGTGGAACGTGAGTGAGCG+TGG 0.642453 5_2:+49390764 None:intergenic
GCTATGATATTCTTCAGGAA+GGG 0.645121 5_2:-49385015 Msa0773960:CDS
AGTGAGTCTGCGAAGTGCCA+TGG 0.645311 5_2:+49390668 None:intergenic
TTTGATAAGGTACATTGACA+TGG 0.655626 5_2:-49390001 Msa0773960:intron
GGGTTGGATCCAACACAATG+GGG 0.659140 5_2:-49389940 Msa0773960:CDS
TGTCTGCAATGGTTCCTGGA+GGG 0.662301 5_2:-49382772 Msa0773960:CDS
GGTGATGCAAGCTGTTGGAT+CGG 0.663248 5_2:-49390173 Msa0773960:CDS
TGGTTATATTGACTATGACC+AGG 0.663546 5_2:-49387206 Msa0773960:intron
GTTGGTAAACTTAAGAAACA+AGG 0.669487 5_2:-49383489 Msa0773960:intron
CCTGGTGCTAGATACTATGG+TGG 0.671775 5_2:-49390121 Msa0773960:CDS
TCAGGATCCACTACACCAAG+AGG 0.682850 5_2:+49390363 None:intergenic
CAACACATAAGTCACTTCGT+GGG 0.684698 5_2:-49385047 Msa0773960:CDS
TTGGATCCAACACAATGGGG+AGG 0.686303 5_2:-49389937 Msa0773960:intron
GAGGACCACCTTGAAGTCCA+GGG 0.687951 5_2:+49383967 None:intergenic
CCTGTAATAGTGTGATTGTG+AGG 0.688267 5_2:+49383948 None:intergenic
TGTGATAGATGCCCACCATG+GGG 0.693725 5_2:+49388278 None:intergenic
AAGAATATCATAGCCCCACG+TGG 0.696480 5_2:+49385024 None:intergenic
TCACCAAACACAAATCACAA+TGG 0.702440 5_2:-49390691 Msa0773960:exon
GTGATAGATGCCCACCATGG+GGG 0.708056 5_2:+49388279 None:intergenic
AGTAGCTGAATACTTTGACG+CGG 0.710734 5_2:-49382604 Msa0773960:CDS
GTGTCTGCAATGGTTCCTGG+AGG 0.723786 5_2:-49382773 Msa0773960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATAAATTACTGATTT+TGG + chr5_2:49383681-49383700 None:intergenic 10.0%
!! AAATAATGAAAACAAAAAAA+AGG + chr5_2:49384579-49384598 None:intergenic 10.0%
!!! TTTTAAAGAAAATAATTATG+AGG - chr5_2:49389465-49389484 Msa0773960:intron 10.0%
!! TTTAAAGAAAATAATTATGA+GGG - chr5_2:49389466-49389485 Msa0773960:intron 10.0%
!! AAAAAACACTATATATAACT+TGG + chr5_2:49382393-49382412 None:intergenic 15.0%
!!! TTTTTTTTTTTTTAATGTGC+AGG - chr5_2:49382441-49382460 Msa0773960:CDS 15.0%
!!! TTTTTTTTTTTTAATGTGCA+GGG - chr5_2:49382442-49382461 Msa0773960:CDS 15.0%
!!! ATTTGTTAGCATTTATTTTA+AGG + chr5_2:49383346-49383365 None:intergenic 15.0%
!!! ATTGCTCTTTTATAATTTAT+AGG - chr5_2:49383546-49383565 Msa0773960:CDS 15.0%
!!! TTGCTCTTTTATAATTTATA+GGG - chr5_2:49383547-49383566 Msa0773960:CDS 15.0%
!!! AGTAATTATTTTACTACTAA+TGG - chr5_2:49383599-49383618 Msa0773960:intron 15.0%
!!! TAACATACAAAAAACTTTTT+TGG - chr5_2:49384036-49384055 Msa0773960:intron 15.0%
!! TTAAAATATTATGCATCAAA+AGG + chr5_2:49384137-49384156 None:intergenic 15.0%
!! AAGAAAATAATTCATCAAAA+AGG - chr5_2:49384603-49384622 Msa0773960:intron 15.0%
!! TTTCTTTCATAGATTTAAAA+AGG - chr5_2:49384838-49384857 Msa0773960:intron 15.0%
!!! TTTATTACTAAATCATTTTC+TGG - chr5_2:49385231-49385250 Msa0773960:intron 15.0%
!!! AATTATGAATTTTTAAGATG+AGG - chr5_2:49385707-49385726 Msa0773960:intron 15.0%
!!! ACATGATAGAATTTTTTTTT+AGG - chr5_2:49386124-49386143 Msa0773960:intron 15.0%
!! TCAAACAAAAACTAAAATAA+AGG - chr5_2:49386369-49386388 Msa0773960:intron 15.0%
!!! AAAAACTAAAATAAAGGTTT+TGG - chr5_2:49386375-49386394 Msa0773960:intron 15.0%
!!! AAAACTAAAATAAAGGTTTT+GGG - chr5_2:49386376-49386395 Msa0773960:intron 15.0%
!!! AATTAAATTTGAAATCTATC+TGG + chr5_2:49386526-49386545 None:intergenic 15.0%
!!! ATATTTTATGTACATAACAA+TGG - chr5_2:49387456-49387475 Msa0773960:intron 15.0%
!! TTAATGTTACTAAAATTCTA+AGG - chr5_2:49387736-49387755 Msa0773960:intron 15.0%
!!! TTTTTTTCATTGTTTTTTGT+GGG + chr5_2:49387799-49387818 None:intergenic 15.0%
!!! ATTTTTTTCATTGTTTTTTG+TGG + chr5_2:49387800-49387819 None:intergenic 15.0%
!! ATGAAAAAAATAACAATCAT+AGG - chr5_2:49387809-49387828 Msa0773960:intron 15.0%
!! TGAAAAAAATAACAATCATA+GGG - chr5_2:49387810-49387829 Msa0773960:intron 15.0%
!!! TTTTATGTAAGTGAAAATTT+AGG + chr5_2:49387900-49387919 None:intergenic 15.0%
!! TCAATATTTATTGAGATATT+AGG - chr5_2:49388267-49388286 Msa0773960:intron 15.0%
!!! TATTTTAAAATCCATCAATT+GGG - chr5_2:49388535-49388554 Msa0773960:intron 15.0%
!! AAACATCCAATAAAATAAAT+TGG + chr5_2:49389629-49389648 None:intergenic 15.0%
!! AAATATGTTGATATTGATAT+TGG - chr5_2:49389676-49389695 Msa0773960:intron 15.0%
!! AATATGTTGATATTGATATT+GGG - chr5_2:49389677-49389696 Msa0773960:intron 15.0%
!!! ATATTTTGCAATATTGATAT+TGG - chr5_2:49389726-49389745 Msa0773960:intron 15.0%
!!! TATTTTGCAATATTGATATT+GGG - chr5_2:49389727-49389746 Msa0773960:intron 15.0%
!!! TTGTTGATTAAATTAAATTC+AGG - chr5_2:49390201-49390220 Msa0773960:CDS 15.0%
!! ATATGATAATAAACCATATA+TGG - chr5_2:49390509-49390528 Msa0773960:CDS 15.0%
!! GAGAATAGATATTAATTATT+TGG - chr5_2:49390554-49390573 Msa0773960:intron 15.0%
!! AAAAAAAGTTAATCTCTGTT+TGG + chr5_2:49382428-49382447 None:intergenic 20.0%
!! TTTGCATTTGTAATTTGATA+AGG - chr5_2:49382663-49382682 Msa0773960:intron 20.0%
!! AATAAAACAGAGACATTATT+TGG + chr5_2:49383316-49383335 None:intergenic 20.0%
!!! TAGCATTTATTTTAAGGTAT+AGG + chr5_2:49383340-49383359 None:intergenic 20.0%
!!! GAAAAATTAGTAAATGCTTT+TGG - chr5_2:49383737-49383756 Msa0773960:CDS 20.0%
!!! TGTCATTTTGCTTTATTTTT+AGG - chr5_2:49383762-49383781 Msa0773960:intron 20.0%
!! AACATATATAATACTGCAAA+GGG + chr5_2:49383929-49383948 None:intergenic 20.0%
!! TAACATATATAATACTGCAA+AGG + chr5_2:49383930-49383949 None:intergenic 20.0%
!!! TAATTTACTTGTTATTCTTG+TGG - chr5_2:49384178-49384197 Msa0773960:intron 20.0%
!!! ATTTTAGCCAAAAAACAAAA+AGG - chr5_2:49384631-49384650 Msa0773960:intron 20.0%
!! AGTTAAAAAATGTCTTACAT+AGG - chr5_2:49384664-49384683 Msa0773960:intron 20.0%
!! CTATGATAAAAAATCTTACA+AGG - chr5_2:49384699-49384718 Msa0773960:intron 20.0%
!!! TTTTTCAATTTTATGAGATG+CGG + chr5_2:49384917-49384936 None:intergenic 20.0%
!!! TAATTATTTTACACTTGTGT+TGG - chr5_2:49385056-49385075 Msa0773960:CDS 20.0%
!! ATTTAATAGTATATGCTGTT+GGG - chr5_2:49385906-49385925 Msa0773960:intron 20.0%
!! ATACATGAATGAGTTTATAT+TGG + chr5_2:49386100-49386119 None:intergenic 20.0%
!!! GAATTTTTTTTTAGGATAGT+TGG - chr5_2:49386132-49386151 Msa0773960:intron 20.0%
!!! GTTTATTTTGTTGAATTTTG+AGG - chr5_2:49386560-49386579 Msa0773960:intron 20.0%
!!! CACATTTGATTTTTTTTTTC+TGG + chr5_2:49386595-49386614 None:intergenic 20.0%
!!! TGAGTATAAAAGTCTTATTT+TGG - chr5_2:49386797-49386816 Msa0773960:intron 20.0%
!!! ACTCTTTTATATGCATTATA+TGG - chr5_2:49387074-49387093 Msa0773960:intron 20.0%
!!! ATTTTACACAAAATCGTTAA+GGG + chr5_2:49387175-49387194 None:intergenic 20.0%
!!! AATTTTACACAAAATCGTTA+AGG + chr5_2:49387176-49387195 None:intergenic 20.0%
!! TGAAAGATTATACAAAACTA+GGG + chr5_2:49387253-49387272 None:intergenic 20.0%
!! ATGAAAGATTATACAAAACT+AGG + chr5_2:49387254-49387273 None:intergenic 20.0%
!!! TACTAAAATTCTAAGGAAAA+AGG - chr5_2:49387743-49387762 Msa0773960:intron 20.0%
!! AGGAAAAAGGAATTAAAAAT+CGG - chr5_2:49387756-49387775 Msa0773960:intron 20.0%
!!! TTTTTTCATTGTTTTTTGTG+GGG + chr5_2:49387798-49387817 None:intergenic 20.0%
!!! TAAAAAATCAAGAATGGATT+GGG + chr5_2:49388404-49388423 None:intergenic 20.0%
!! ATTGTGTAAAAAATCAAGAA+TGG + chr5_2:49388410-49388429 None:intergenic 20.0%
!!! GTATTTTAAAATCCATCAAT+TGG - chr5_2:49388534-49388553 Msa0773960:intron 20.0%
!! ACTAACTTAAGTATAGAATT+TGG + chr5_2:49388606-49388625 None:intergenic 20.0%
!! AATATATACTTCAGTGTAAA+AGG - chr5_2:49388827-49388846 Msa0773960:intron 20.0%
!! ATCGAAATATATCAACAAAA+TGG + chr5_2:49389281-49389300 None:intergenic 20.0%
!!! TTGATTGTTGATTAATTTGA+AGG + chr5_2:49389587-49389606 None:intergenic 20.0%
!! ATTAATCAACAATCAACAAT+CGG - chr5_2:49389591-49389610 Msa0773960:intron 20.0%
!!! AAATGGCCAATTTATTTTAT+TGG - chr5_2:49389620-49389639 Msa0773960:intron 20.0%
!! TATTGATATTGGGTTTAATT+TGG - chr5_2:49389687-49389706 Msa0773960:intron 20.0%
!! TATTGATATTGGGTTTAATT+TGG - chr5_2:49389687-49389706 Msa0773960:intron 20.0%
!!! TATATTTTGCAATACATCAA+AGG - chr5_2:49389771-49389790 Msa0773960:intron 20.0%
!!! ACCTTTTTATATGCATATAT+TGG - chr5_2:49389954-49389973 Msa0773960:CDS 20.0%
!! ACCAATATATGCATATAAAA+AGG + chr5_2:49389958-49389977 None:intergenic 20.0%
!!! TTTTTATATGCATATATTGG+TGG - chr5_2:49389957-49389976 Msa0773960:CDS 20.0%
!!! AGAATTTTCCTTAATTTGTA+AGG + chr5_2:49390111-49390130 None:intergenic 20.0%
!! CAAATTAAGGAAAATTCTAA+AGG - chr5_2:49390113-49390132 Msa0773960:intron 20.0%
!!! GTGAATTATTTTATGAAGAA+TGG - chr5_2:49390462-49390481 Msa0773960:intron 20.0%
!! AGAAAATGATAAACCATATA+TGG + chr5_2:49390525-49390544 None:intergenic 20.0%
!! AAAATAGAGTTAATACAAGA+TGG - chr5_2:49390625-49390644 Msa0773960:intron 20.0%
!!! TATATTATTATATGGGTTGG+CGG + chr5_2:49381939-49381958 None:intergenic 25.0%
! GTGTGGGTATATTATTATAT+GGG + chr5_2:49381946-49381965 None:intergenic 25.0%
! TGTGTGGGTATATTATTATA+TGG + chr5_2:49381947-49381966 None:intergenic 25.0%
! AAAGGTAGAAAATGAAAATG+CGG + chr5_2:49382104-49382123 None:intergenic 25.0%
!!! GAGAATTTTGAAAATTTCAG+TGG - chr5_2:49382273-49382292 Msa0773960:three_prime_UTR 25.0%
! GAAATGAGTATGTTGAATTA+TGG - chr5_2:49382578-49382597 Msa0773960:CDS 25.0%
! TTTAGTCTCACAAAGAATTT+GGG - chr5_2:49382803-49382822 Msa0773960:CDS 25.0%
! CCTTCTATAGACTAATATAT+CGG + chr5_2:49382915-49382934 None:intergenic 25.0%
!!! TTTTGAAAACAGAACAAAAC+AGG - chr5_2:49383224-49383243 Msa0773960:intron 25.0%
!!! TGTTGATTGCATTCTTTTAA+TGG + chr5_2:49383284-49383303 None:intergenic 25.0%
! GACAAAAAAAAACTGTAAGT+AGG + chr5_2:49383846-49383865 None:intergenic 25.0%
! ACATATATAATACTGCAAAG+GGG + chr5_2:49383928-49383947 None:intergenic 25.0%
! AAATATTATGCATCAAAAGG+AGG + chr5_2:49384134-49384153 None:intergenic 25.0%
!!! CTCTTTTCCTTTTTGTTTTT+TGG + chr5_2:49384641-49384660 None:intergenic 25.0%
! CAAAAAACAAAAAGGAAAAG+AGG - chr5_2:49384639-49384658 Msa0773960:intron 25.0%
! TCAACAATTTAACAGCAAAA+TGG + chr5_2:49385202-49385221 None:intergenic 25.0%
!!! TTGTGTTTCTTTAGAATTTC+CGG + chr5_2:49385295-49385314 None:intergenic 25.0%
! TTCTTCTAATTCTAAGTAGT+TGG - chr5_2:49385550-49385569 Msa0773960:intron 25.0%
! ATACAATCTATAACTATGCA+TGG + chr5_2:49385639-49385658 None:intergenic 25.0%
! TGCATAGTTATAGATTGTAT+TGG - chr5_2:49385639-49385658 Msa0773960:intron 25.0%
! GATTATGGTGTTTAAATAGT+TGG - chr5_2:49385666-49385685 Msa0773960:intron 25.0%
! TACTATTAAATGATGAACCA+TGG + chr5_2:49385897-49385916 None:intergenic 25.0%
! CATTTAATAGTATATGCTGT+TGG - chr5_2:49385905-49385924 Msa0773960:intron 25.0%
!! GAAATTCAATTTTCCATAAG+AGG + chr5_2:49385991-49386010 None:intergenic 25.0%
! AAATTGAATTTCAGCAAACA+AGG - chr5_2:49385999-49386018 Msa0773960:intron 25.0%
!! ATAGTTGGTTCATGAAAAAT+TGG - chr5_2:49386147-49386166 Msa0773960:intron 25.0%
! TGAAAAATTGGTTATATGAC+AGG - chr5_2:49386159-49386178 Msa0773960:intron 25.0%
! ACATGATAGCAAAAACATTT+AGG - chr5_2:49386247-49386266 Msa0773960:intron 25.0%
! ATAGTTAGTTCATGAAAAAC+TGG - chr5_2:49386270-49386289 Msa0773960:intron 25.0%
!! AATTTAATCATTTTGTTCCC+AGG - chr5_2:49386671-49386690 Msa0773960:intron 25.0%
!!! AAAATCGATTTTAACTACCA+TGG + chr5_2:49386729-49386748 None:intergenic 25.0%
! TTTATACTCATAATTGCTGA+GGG + chr5_2:49386787-49386806 None:intergenic 25.0%
!! TTTTATACTCATAATTGCTG+AGG + chr5_2:49386788-49386807 None:intergenic 25.0%
!!! GTATAAAAGTCTTATTTTGG+TGG - chr5_2:49386800-49386819 Msa0773960:intron 25.0%
! CAAAGAAAAGTAGAATATAC+AGG + chr5_2:49386834-49386853 None:intergenic 25.0%
!!! CTGTATATTCTACTTTTCTT+TGG - chr5_2:49386832-49386851 Msa0773960:intron 25.0%
! AAACGTTAAATCAAACTCAT+AGG + chr5_2:49386925-49386944 None:intergenic 25.0%
! GCAATTAAAACTTAACACTT+AGG + chr5_2:49386954-49386973 None:intergenic 25.0%
!! AGTATTTCAAGTGTAATGTA+AGG - chr5_2:49387031-49387050 Msa0773960:intron 25.0%
! AAATTAATCATTTCAAGCCT+AGG - chr5_2:49387191-49387210 Msa0773960:intron 25.0%
! ATAATCTTTCATTCATGTCA+TGG - chr5_2:49387262-49387281 Msa0773960:CDS 25.0%
! TAATCTTTCATTCATGTCAT+GGG - chr5_2:49387263-49387282 Msa0773960:CDS 25.0%
! ATAACAATGGAATTCTGATA+TGG - chr5_2:49387469-49387488 Msa0773960:intron 25.0%
!! TTTCACACATGAATCATTTT+AGG - chr5_2:49387496-49387515 Msa0773960:intron 25.0%
! TGAAAGAGATAAACAAGAAA+GGG - chr5_2:49387687-49387706 Msa0773960:intron 25.0%
! GGAAAAAGGAATTAAAAATC+GGG - chr5_2:49387757-49387776 Msa0773960:intron 25.0%
!!! TTTTTCATTGTTTTTTGTGG+GGG + chr5_2:49387797-49387816 None:intergenic 25.0%
! TTAAATCCTACTGTAACTAT+CGG + chr5_2:49387932-49387951 None:intergenic 25.0%
! TAGATAGATAAACAAGCTTT+AGG - chr5_2:49387960-49387979 Msa0773960:intron 25.0%
!!! ATAAGTCTTCATTTTTGTGA+TGG - chr5_2:49388033-49388052 Msa0773960:intron 25.0%
!!! TTTTGGGGATAAAATACATT+TGG + chr5_2:49388205-49388224 None:intergenic 25.0%
!! AAATAGAGAACTTGTGTTTT+GGG + chr5_2:49388221-49388240 None:intergenic 25.0%
!! AAAGCAATTTCACAGTATTT+TGG - chr5_2:49388303-49388322 Msa0773960:CDS 25.0%
!! AAGCAATTTCACAGTATTTT+GGG - chr5_2:49388304-49388323 Msa0773960:CDS 25.0%
!!! AAAAAATCAAGAATGGATTG+GGG + chr5_2:49388403-49388422 None:intergenic 25.0%
! GTAAAAAATCAAGAATGGAT+TGG + chr5_2:49388405-49388424 None:intergenic 25.0%
!!! TTCTTCATTTTTGTTCATGT+AGG - chr5_2:49388905-49388924 Msa0773960:intron 25.0%
! TAGTTAGCAATTGTTCTATA+TGG + chr5_2:49389032-49389051 None:intergenic 25.0%
! TAGAACAATTGCTAACTATT+AGG - chr5_2:49389034-49389053 Msa0773960:intron 25.0%
! ATTCTTGTCTTAACATTTCT+TGG - chr5_2:49389222-49389241 Msa0773960:intron 25.0%
! CCTCATTCTTTAATAGTTTA+GGG - chr5_2:49389398-49389417 Msa0773960:intron 25.0%
!! TTAATAGTTTAGGGTGAAAT+AGG - chr5_2:49389407-49389426 Msa0773960:intron 25.0%
!! TAATAGTTTAGGGTGAAATA+GGG - chr5_2:49389408-49389427 Msa0773960:intron 25.0%
!!! TGAAATTTTTCAAGTTTGGT+TGG + chr5_2:49389524-49389543 None:intergenic 25.0%
! AACCAAACTTGAAAAATTTC+AGG - chr5_2:49389523-49389542 Msa0773960:intron 25.0%
!! CAAAATAGCCTTACAAATTA+AGG - chr5_2:49390100-49390119 Msa0773960:intron 25.0%
!!! TTATTTTATGAAGAATGGTC+AGG - chr5_2:49390467-49390486 Msa0773960:intron 25.0%
!!! ACTTTGAGATAAGTTTTGTT+AGG + chr5_2:49390729-49390748 None:intergenic 25.0%
GGGTATATTATTATATGGGT+TGG + chr5_2:49381942-49381961 None:intergenic 30.0%
AGGACGTAAGAATAAAAGAA+AGG + chr5_2:49382122-49382141 None:intergenic 30.0%
! TTTTATTCTTACGTCCTGTT+TGG - chr5_2:49382125-49382144 Msa0773960:three_prime_UTR 30.0%
! AACGACGTAAAATTTTCTGA+AGG + chr5_2:49382481-49382500 None:intergenic 30.0%
! AGAAAATTTTACGTCGTTGT+CGG - chr5_2:49382483-49382502 Msa0773960:intron 30.0%
ATGACGAATAAATACAGTGA+AGG - chr5_2:49382529-49382548 Msa0773960:intron 30.0%
AGTATGTTGAATTATGGATC+TGG - chr5_2:49382584-49382603 Msa0773960:CDS 30.0%
!!! GGTTATGATTGTTTTGTTTC+AGG - chr5_2:49382605-49382624 Msa0773960:CDS 30.0%
TTTGATAAGGTACATTGACA+TGG - chr5_2:49382676-49382695 Msa0773960:intron 30.0%
CTTTAGTCTCACAAAGAATT+TGG - chr5_2:49382802-49382821 Msa0773960:CDS 30.0%
! CCGATATATTAGTCTATAGA+AGG - chr5_2:49382912-49382931 Msa0773960:intron 30.0%
TTGAATGTAATCACATGTGT+CGG - chr5_2:49383070-49383089 Msa0773960:intron 30.0%
AGGACATGATATTAAAGAAC+TGG - chr5_2:49383244-49383263 Msa0773960:intron 30.0%
ATTAAAGAACTGGTAGATCT+TGG - chr5_2:49383254-49383273 Msa0773960:intron 30.0%
TTAAAGAACTGGTAGATCTT+GGG - chr5_2:49383255-49383274 Msa0773960:intron 30.0%
CAGGAAATGATTACTATATC+AGG + chr5_2:49383375-49383394 None:intergenic 30.0%
TCTCCACAGCTATTATAAAA+GGG + chr5_2:49383806-49383825 None:intergenic 30.0%
TTCTCCACAGCTATTATAAA+AGG + chr5_2:49383807-49383826 None:intergenic 30.0%
TCAATATGATCATGCTATGA+TGG - chr5_2:49383864-49383883 Msa0773960:intron 30.0%
CAGTAAATCAATTCTTCACA+AGG + chr5_2:49383977-49383996 None:intergenic 30.0%
! CTTGTGAAGAATTGATTTAC+TGG - chr5_2:49383975-49383994 Msa0773960:CDS 30.0%
! TGAAGAATTGATTTACTGGA+CGG - chr5_2:49383979-49383998 Msa0773960:CDS 30.0%
!! TTTATTTTCCTCTGCAGTAT+AGG - chr5_2:49384230-49384249 Msa0773960:intron 30.0%
TCAATAAAGCAGTGTAAACT+TGG + chr5_2:49384347-49384366 None:intergenic 30.0%
! AGCCTTTTCCATAAATTATG+AGG - chr5_2:49384736-49384755 Msa0773960:intron 30.0%
! GCCTTTTCCATAAATTATGA+GGG - chr5_2:49384737-49384756 Msa0773960:intron 30.0%
TCCCTCATAATTTATGGAAA+AGG + chr5_2:49384741-49384760 None:intergenic 30.0%
TCACAATTCACAAGTCTATT+GGG + chr5_2:49384798-49384817 None:intergenic 30.0%
ATCACAATTCACAAGTCTAT+TGG + chr5_2:49384799-49384818 None:intergenic 30.0%
ATTGTGAGTGAGGTAAATTA+GGG + chr5_2:49385001-49385020 None:intergenic 30.0%
TAAGAGAATGTACTAGTAGA+TGG + chr5_2:49385038-49385057 None:intergenic 30.0%
!! TTGTGTTGGTACTTAGTTTT+GGG - chr5_2:49385070-49385089 Msa0773960:CDS 30.0%
!!! TTTTGGGATTTTTATAGCCT+CGG - chr5_2:49385086-49385105 Msa0773960:CDS 30.0%
AGAGAAAAAAACTTCTGCAT+TGG + chr5_2:49385121-49385140 None:intergenic 30.0%
CTCCATATTCTATGTCAAAA+TGG - chr5_2:49385139-49385158 Msa0773960:CDS 30.0%
!! AGCCATTTTGACATAGAATA+TGG + chr5_2:49385144-49385163 None:intergenic 30.0%
TTTAACAGCAAAATGGAAAG+TGG + chr5_2:49385195-49385214 None:intergenic 30.0%
ATGTGTATCAAATTTCTCTG+TGG - chr5_2:49385343-49385362 Msa0773960:CDS 30.0%
AATCTATAACTATGCATGGA+AGG + chr5_2:49385635-49385654 None:intergenic 30.0%
! AATTTTCCATAAGAGGAACA+GGG + chr5_2:49385984-49386003 None:intergenic 30.0%
AAAATTGGTTATATGACAGG+TGG - chr5_2:49386162-49386181 Msa0773960:intron 30.0%
!! ATGTTTTTGCTATCATGTGA+CGG + chr5_2:49386245-49386264 None:intergenic 30.0%
TGAAAAACTGGTTATATGAC+AGG - chr5_2:49386282-49386301 Msa0773960:intron 30.0%
!!! AATAAAGGTTTTGGGTACTT+TGG - chr5_2:49386384-49386403 Msa0773960:intron 30.0%
!!! ATAAAGGTTTTGGGTACTTT+GGG - chr5_2:49386385-49386404 Msa0773960:intron 30.0%
!! CGACAAAATATTTTGAACCT+GGG + chr5_2:49386691-49386710 None:intergenic 30.0%
!!! ATTTTAACTACCATGGCAAT+TGG + chr5_2:49386722-49386741 None:intergenic 30.0%
!!! CAAAAGGCAACTTTAGTTTT+TGG - chr5_2:49386892-49386911 Msa0773960:intron 30.0%
CTGGAAAAAAAATTGAACCT+AGG + chr5_2:49387211-49387230 None:intergenic 30.0%
AGATTATACAAAACTAGGGT+TGG + chr5_2:49387249-49387268 None:intergenic 30.0%
ACTTATCTAATATCTGCAGA+TGG - chr5_2:49387310-49387329 Msa0773960:intron 30.0%
ACAACATCTGCATAATCAAA+AGG + chr5_2:49387602-49387621 None:intergenic 30.0%
CTGAAAGAGATAAACAAGAA+AGG - chr5_2:49387686-49387705 Msa0773960:intron 30.0%
TAACAACAGAAACAACTTCA+GGG + chr5_2:49387848-49387867 None:intergenic 30.0%
TTAACAACAGAAACAACTTC+AGG + chr5_2:49387849-49387868 None:intergenic 30.0%
ATAAATACACTAACTCCCAA+CGG - chr5_2:49387995-49388014 Msa0773960:intron 30.0%
! CTTTTATTACCAAAACCGTT+GGG + chr5_2:49388013-49388032 None:intergenic 30.0%
! TCTTTTATTACCAAAACCGT+TGG + chr5_2:49388014-49388033 None:intergenic 30.0%
!! TCTTCATTTTTGTGATGGTA+AGG - chr5_2:49388038-49388057 Msa0773960:intron 30.0%
! AATAGAGAACTTGTGTTTTG+GGG + chr5_2:49388220-49388239 None:intergenic 30.0%
! CAAATAGAGAACTTGTGTTT+TGG + chr5_2:49388222-49388241 None:intergenic 30.0%
AAATCCATCAATTGGGTATA+TGG - chr5_2:49388542-49388561 Msa0773960:intron 30.0%
AATCCATCAATTGGGTATAT+GGG - chr5_2:49388543-49388562 Msa0773960:intron 30.0%
CACTTGAACAGAAATTTCAT+TGG - chr5_2:49388627-49388646 Msa0773960:intron 30.0%
GACAACAAAATATGCACAAA+AGG + chr5_2:49388862-49388881 None:intergenic 30.0%
!! TTTGTGCATATTTTGTTGTC+TGG - chr5_2:49388862-49388881 Msa0773960:intron 30.0%
TTCTGGTAATTCTTGAATTC+CGG + chr5_2:49388939-49388958 None:intergenic 30.0%
! AGTTACTAAGAACTTGTTTC+TGG + chr5_2:49388956-49388975 None:intergenic 30.0%
CAATAACAGTAAAATTTGCC+GGG + chr5_2:49389083-49389102 None:intergenic 30.0%
GCAATAACAGTAAAATTTGC+CGG + chr5_2:49389084-49389103 None:intergenic 30.0%
TTAAGTTTACCAACACCAAA+TGG + chr5_2:49389182-49389201 None:intergenic 30.0%
! GTTGGTAAACTTAAGAAACA+AGG - chr5_2:49389188-49389207 Msa0773960:intron 30.0%
GCCTCATTCTTTAATAGTTT+AGG - chr5_2:49389397-49389416 Msa0773960:intron 30.0%
CCCTAAACTATTAAAGAATG+AGG + chr5_2:49389401-49389420 None:intergenic 30.0%
TCTGGAAAAACTAAAAAGGT+TGG + chr5_2:49389563-49389582 None:intergenic 30.0%
!! AGGTTCTGGAAAAACTAAAA+AGG + chr5_2:49389567-49389586 None:intergenic 30.0%
! GTTGATTAATTTGAAGGTTC+TGG + chr5_2:49389581-49389600 None:intergenic 30.0%
!! TCAACAATCGGTTTGTTAAA+TGG - chr5_2:49389603-49389622 Msa0773960:intron 30.0%
!! CTGTAATTACGTGTTGATTA+CGG - chr5_2:49389982-49390001 Msa0773960:CDS 30.0%
GTCAAGATAATAAGAAGGTA+TGG + chr5_2:49390158-49390177 None:intergenic 30.0%
AGTGAGTCAAGATAATAAGA+AGG + chr5_2:49390163-49390182 None:intergenic 30.0%
TCTATCTCAAAACCAATTGT+GGG + chr5_2:49390330-49390349 None:intergenic 30.0%
TAAGAAGTGAAGATGACATA+CGG - chr5_2:49390362-49390381 Msa0773960:CDS 30.0%
GCACTATTATTAACATGTGT+AGG + chr5_2:49390774-49390793 None:intergenic 30.0%
TCACCAAACACAAATCACAA+TGG - chr5_2:49381986-49382005 Msa0773960:three_prime_UTR 35.0%
! AAAAAGTGCAGTGCTTACAT+CGG + chr5_2:49382200-49382219 None:intergenic 35.0%
TCGATTATATCTTCGATCTC+AGG + chr5_2:49382335-49382354 None:intergenic 35.0%
AACTTGAAAAAGCTCGTCAA+TGG - chr5_2:49382354-49382373 Msa0773960:CDS 35.0%
AAATACAGTGAAGGTTATCC+TGG - chr5_2:49382538-49382557 Msa0773960:intron 35.0%
TCAGGTTCAGAACTTTGTTA+TGG - chr5_2:49382623-49382642 Msa0773960:CDS 35.0%
TGTTTGTGTCAATGCTTCAT+AGG + chr5_2:49382990-49383009 None:intergenic 35.0%
!! ATGAAGCATTGACACAAACA+TGG - chr5_2:49382990-49383009 Msa0773960:intron 35.0%
TAAAGAACTGGTAGATCTTG+GGG - chr5_2:49383256-49383275 Msa0773960:intron 35.0%
CAAAATGTTCATCTGAACAC+AGG + chr5_2:49383394-49383413 None:intergenic 35.0%
TTTCAGTTGACCAAAAACTG+AGG + chr5_2:49383580-49383599 None:intergenic 35.0%
TTAGCTGTTGAACACTTATG+TGG - chr5_2:49383640-49383659 Msa0773960:intron 35.0%
CACAGCTATTATAAAAGGGA+GGG + chr5_2:49383802-49383821 None:intergenic 35.0%
GTGTAAACTTGGAAGTTAGA+AGG + chr5_2:49384336-49384355 None:intergenic 35.0%
GAAACCTCATGAGAGAATTA+TGG - chr5_2:49384365-49384384 Msa0773960:intron 35.0%
TTTCTATGGTTGTCAACTCA+TGG + chr5_2:49384481-49384500 None:intergenic 35.0%
ATTCATTCATCATGTCCTAG+TGG + chr5_2:49384515-49384534 None:intergenic 35.0%
TCCATAAATTATGAGGGAGA+AGG - chr5_2:49384743-49384762 Msa0773960:intron 35.0%
TCCTTCTCCCTCATAATTTA+TGG + chr5_2:49384747-49384766 None:intergenic 35.0%
!! TGTAAATGTCTTGGCTCTAT+TGG + chr5_2:49384887-49384906 None:intergenic 35.0%
GGATACTTCTGTAAATGTCT+TGG + chr5_2:49384896-49384915 None:intergenic 35.0%
TTGTGAGTGAGGTAAATTAG+GGG + chr5_2:49385000-49385019 None:intergenic 35.0%
GATTGTGAGTGAGGTAAATT+AGG + chr5_2:49385002-49385021 None:intergenic 35.0%
!! CTTGTGTTGGTACTTAGTTT+TGG - chr5_2:49385069-49385088 Msa0773960:CDS 35.0%
ATGCCAAAATGATGCAATTC+CGG - chr5_2:49385273-49385292 Msa0773960:intron 35.0%
! TTTCCGGAATTGCATCATTT+TGG + chr5_2:49385279-49385298 None:intergenic 35.0%
AGATACAGCTGATATCTTCT+TGG + chr5_2:49385410-49385429 None:intergenic 35.0%
!! TCTTTGAAACAATGCCATAC+AGG - chr5_2:49385434-49385453 Msa0773960:intron 35.0%
! TGGTTATATTGACTATGACC+AGG - chr5_2:49385471-49385490 Msa0773960:intron 35.0%
! TATATTGACTATGACCAGGT+AGG - chr5_2:49385475-49385494 Msa0773960:intron 35.0%
! ACCATTGTATTTCTGTGTTG+TGG - chr5_2:49385503-49385522 Msa0773960:intron 35.0%
TCCACAACACAGAAATACAA+TGG + chr5_2:49385507-49385526 None:intergenic 35.0%
GAGCTCATTAGCAAAGATAA+AGG + chr5_2:49385602-49385621 None:intergenic 35.0%
! GATTGTATTGGCAGAGATTA+TGG - chr5_2:49385651-49385670 Msa0773960:intron 35.0%
CTACCATATGCCTTAACTAT+GGG + chr5_2:49385750-49385769 None:intergenic 35.0%
CATAGTTAAGGCATATGGTA+GGG - chr5_2:49385749-49385768 Msa0773960:intron 35.0%
AGATGATTGAGAAACTTGTG+TGG - chr5_2:49385788-49385807 Msa0773960:intron 35.0%
GATGATTGAGAAACTTGTGT+GGG - chr5_2:49385789-49385808 Msa0773960:intron 35.0%
ATGTGATGCAAAATCATCCA+TGG - chr5_2:49385877-49385896 Msa0773960:intron 35.0%
! CAATTTTCCATAAGAGGAAC+AGG + chr5_2:49385985-49386004 None:intergenic 35.0%
TGAATTTCAGCAAACAAGGT+AGG - chr5_2:49386003-49386022 Msa0773960:intron 35.0%
GAATTTCAGCAAACAAGGTA+GGG - chr5_2:49386004-49386023 Msa0773960:intron 35.0%
TATATGACAGGTAGTAACAG+AGG - chr5_2:49386294-49386313 Msa0773960:intron 35.0%
ATATGACAGGTAGTAACAGA+GGG - chr5_2:49386295-49386314 Msa0773960:intron 35.0%
! TATGGATTAAGAGAAGAGAG+TGG - chr5_2:49386219-49386238 Msa0773960:intron 35.0%
!! CATTTTCCCTAATTCTAGGA+GGG - chr5_2:49386467-49386486 Msa0773960:intron 35.0%
!! GCGACAAAATATTTTGAACC+TGG + chr5_2:49386692-49386711 None:intergenic 35.0%
AAAAGTAGAATATACAGGCG+AGG + chr5_2:49386829-49386848 None:intergenic 35.0%
! TGGAAACGATTCTACGATTT+TGG - chr5_2:49386852-49386871 Msa0773960:intron 35.0%
TTGGCAATAAACTACTAGTC+TGG + chr5_2:49387230-49387249 None:intergenic 35.0%
!!! AGAAAAGTGCTGCACTTTTT+AGG - chr5_2:49387333-49387352 Msa0773960:intron 35.0%
AGGCCAAAATTAATAGTTGC+CGG - chr5_2:49387353-49387372 Msa0773960:intron 35.0%
TACGCGCATAATCATAAAGA+CGG + chr5_2:49387394-49387413 None:intergenic 35.0%
TTAGGTCTGTGATAAACAGA+AGG - chr5_2:49387514-49387533 Msa0773960:intron 35.0%
TAAACAGAAGGCAGTTATGT+TGG - chr5_2:49387526-49387545 Msa0773960:intron 35.0%
TCTGCATAATCAAAAGGAGA+AGG + chr5_2:49387596-49387615 None:intergenic 35.0%
GCTATGATATTCTTCAGGAA+GGG - chr5_2:49387662-49387681 Msa0773960:intron 35.0%
TTCACTGAAAATCAACTGTG+AGG - chr5_2:49388152-49388171 Msa0773960:intron 35.0%
TCACTGAAAATCAACTGTGA+GGG - chr5_2:49388153-49388172 Msa0773960:intron 35.0%
GAAAGAAAGGGCTATACTTA+AGG - chr5_2:49388176-49388195 Msa0773960:intron 35.0%
CACAATATCATGACTGACAT+CGG + chr5_2:49388440-49388459 None:intergenic 35.0%
! GATCAACATTTGTTGAGTCT+TGG - chr5_2:49388463-49388482 Msa0773960:intron 35.0%
! TATATGGGCAAGTAGCTTTT+GGG - chr5_2:49388558-49388577 Msa0773960:intron 35.0%
CTACGAAGACAAGATAAATC+AGG - chr5_2:49388680-49388699 Msa0773960:intron 35.0%
AAATGCAAGCTCAGCATATA+TGG + chr5_2:49389325-49389344 None:intergenic 35.0%
!! TCAAGTTTGGTTGGTAAAGT+AGG + chr5_2:49389515-49389534 None:intergenic 35.0%
!!! GGCCTGAAATTTTTCAAGTT+TGG + chr5_2:49389528-49389547 None:intergenic 35.0%
AAAGGTTGGACAAGTCTTTA+AGG + chr5_2:49389549-49389568 None:intergenic 35.0%
TCAAATGGAACAGCATAAGA+CGG + chr5_2:49389803-49389822 None:intergenic 35.0%
TTATGCTGTTCCATTTGACA+GGG - chr5_2:49389805-49389824 Msa0773960:intron 35.0%
!! TCCTGGAACAGTGTTTTTAT+TGG + chr5_2:49389881-49389900 None:intergenic 35.0%
TTATCTTGACTCACTTATGC+TGG - chr5_2:49390168-49390187 Msa0773960:CDS 35.0%
AAATTCAGGCACAAAGTTGA+AGG - chr5_2:49390215-49390234 Msa0773960:CDS 35.0%
! CACAAAGTTGAAGGATTTTG+TGG - chr5_2:49390224-49390243 Msa0773960:intron 35.0%
TAGCATAACCTTCTACTTCA+TGG + chr5_2:49390299-49390318 None:intergenic 35.0%
CTCTATCTCAAAACCAATTG+TGG + chr5_2:49390331-49390350 None:intergenic 35.0%
!! CATACGGAGTTAGTTTCTTT+TGG - chr5_2:49390378-49390397 Msa0773960:CDS 35.0%
TGCTGAAAATATTCGTACTC+TGG - chr5_2:49390425-49390444 Msa0773960:intron 35.0%
AAATATTCGTACTCTGGTCT+TGG - chr5_2:49390431-49390450 Msa0773960:intron 35.0%
! TTGTGTTTGGTGAATTGCGT+TGG + chr5_2:49381979-49381998 None:intergenic 40.0%
! TGGCCATTGTGATTTGTGTT+TGG + chr5_2:49381992-49382011 None:intergenic 40.0%
AACACAAATCACAATGGCCA+TGG - chr5_2:49381992-49382011 Msa0773960:three_prime_UTR 40.0%
!! AGAAGTTGGTTTGTTGATGG+TGG + chr5_2:49382036-49382055 None:intergenic 40.0%
!! GAGAGAAGTTGGTTTGTTGA+TGG + chr5_2:49382039-49382058 None:intergenic 40.0%
! AAAAGTGCAGTGCTTACATC+GGG + chr5_2:49382199-49382218 None:intergenic 40.0%
AAACAACTCAACGATCCTCT+TGG - chr5_2:49382299-49382318 Msa0773960:three_prime_UTR 40.0%
TGAAAAAGCTCGTCAATGGA+AGG - chr5_2:49382358-49382377 Msa0773960:CDS 40.0%
! TATCCTGGTGCTAGATACTA+TGG - chr5_2:49382553-49382572 Msa0773960:intron 40.0%
! AACGTGTCATTATCGTATCC+GGG + chr5_2:49383018-49383037 None:intergenic 40.0%
! CAACGTGTCATTATCGTATC+CGG + chr5_2:49383019-49383038 None:intergenic 40.0%
! GTGCAAGTGGTTCTATTCAA+TGG - chr5_2:49383193-49383212 Msa0773960:intron 40.0%
CCACAGCTATTATAAAAGGG+AGG + chr5_2:49383803-49383822 None:intergenic 40.0%
! CCTCCCTTTTATAATAGCTG+TGG - chr5_2:49383800-49383819 Msa0773960:intron 40.0%
TCAAACGTAGTCTTTCTCTG+CGG - chr5_2:49384073-49384092 Msa0773960:intron 40.0%
GTCAATGTGCAGTCATTATC+TGG - chr5_2:49384306-49384325 Msa0773960:intron 40.0%
AGTGCCATAATTCTCTCATG+AGG + chr5_2:49384372-49384391 None:intergenic 40.0%
GCATCTATCACATGGATATC+AGG - chr5_2:49384410-49384429 Msa0773960:intron 40.0%
!! CTGCTTTTGATCATCAGTTG+TGG - chr5_2:49384440-49384459 Msa0773960:intron 40.0%
AGTAGACACTTACACGTGAT+TGG - chr5_2:49384545-49384564 Msa0773960:intron 40.0%
AATTCACAAGTCTATTGGGC+TGG + chr5_2:49384794-49384813 None:intergenic 40.0%
AATGAGATGACTCCTAACTC+CGG - chr5_2:49384961-49384980 Msa0773960:intron 40.0%
TACTAGTAGATGGCATTGCA+AGG + chr5_2:49385028-49385047 None:intergenic 40.0%
TGAAACAATGCCATACAGGT+TGG - chr5_2:49385438-49385457 Msa0773960:intron 40.0%
CCTACCATATGCCTTAACTA+TGG + chr5_2:49385751-49385770 None:intergenic 40.0%
CCATAGTTAAGGCATATGGT+AGG - chr5_2:49385748-49385767 Msa0773960:intron 40.0%
TTGCATCACATCTCTAACGA+AGG + chr5_2:49385868-49385887 None:intergenic 40.0%
TGCTCTTTGGACTTGAAACA+GGG + chr5_2:49386045-49386064 None:intergenic 40.0%
!! TTTCAAGTCCAAAGAGCACT+TGG - chr5_2:49386047-49386066 Msa0773960:intron 40.0%
TATATGACAGGTGGTAACAG+AGG - chr5_2:49386171-49386190 Msa0773960:intron 40.0%
ATATGACAGGTGGTAACAGA+GGG - chr5_2:49386172-49386191 Msa0773960:intron 40.0%
TATGACAGGTAGTAACAGAG+GGG - chr5_2:49386296-49386315 Msa0773960:intron 40.0%
TAGTAACAGAGGGGAGAATT+GGG - chr5_2:49386305-49386324 Msa0773960:intron 40.0%
GCTCAGCAAAACCTATATGT+AGG - chr5_2:49386414-49386433 Msa0773960:intron 40.0%
AAGGAGAGAGACCTACATAT+AGG + chr5_2:49386428-49386447 None:intergenic 40.0%
!!! TGTAGGTCTCTCTCCTTTTT+TGG - chr5_2:49386431-49386450 Msa0773960:intron 40.0%
CCTCTTAGTTGCACCAAAAA+AGG + chr5_2:49386447-49386466 None:intergenic 40.0%
!!! CCTTTTTTGGTGCAACTAAG+AGG - chr5_2:49386444-49386463 Msa0773960:intron 40.0%
!! GAGGCATTTTCCCTAATTCT+AGG - chr5_2:49386463-49386482 Msa0773960:intron 40.0%
! GCATTTTCCCTAATTCTAGG+AGG - chr5_2:49386466-49386485 Msa0773960:intron 40.0%
GAATCTCCCTCCTAGAATTA+GGG + chr5_2:49386476-49386495 None:intergenic 40.0%
TGAATCTCCCTCCTAGAATT+AGG + chr5_2:49386477-49386496 None:intergenic 40.0%
TACCATGGCAATTGGTACTA+AGG + chr5_2:49386714-49386733 None:intergenic 40.0%
!! GCACCGGCAACTATTAATTT+TGG + chr5_2:49387359-49387378 None:intergenic 40.0%
ACGAAGTGACTTATGTGTTG+TGG + chr5_2:49387630-49387649 None:intergenic 40.0%
ACAACACATAAGTCACTTCG+TGG - chr5_2:49387629-49387648 Msa0773960:intron 40.0%
CAACACATAAGTCACTTCGT+GGG - chr5_2:49387630-49387649 Msa0773960:intron 40.0%
GGCTATGATATTCTTCAGGA+AGG - chr5_2:49387661-49387680 Msa0773960:intron 40.0%
AGAGATAAACAAGAAAGGGC+AGG - chr5_2:49387691-49387710 Msa0773960:intron 40.0%
!!! ATTGTTTTTTGTGGGGGATG+GGG + chr5_2:49387791-49387810 None:intergenic 40.0%
!!! CATTGTTTTTTGTGGGGGAT+GGG + chr5_2:49387792-49387811 None:intergenic 40.0%
!!! TCATTGTTTTTTGTGGGGGA+TGG + chr5_2:49387793-49387812 None:intergenic 40.0%
AGAAACAACTTCAGGGAAGT+TGG + chr5_2:49387841-49387860 None:intergenic 40.0%
AGCTTTCCGATAGTTACAGT+AGG - chr5_2:49387923-49387942 Msa0773960:intron 40.0%
GTATGTGCCTTATGACTCTT+GGG - chr5_2:49388071-49388090 Msa0773960:intron 40.0%
AGCAAAACCCAAGAGTCATA+AGG + chr5_2:49388081-49388100 None:intergenic 40.0%
GTATGTGCCTTATGACTCTT+GGG - chr5_2:49388071-49388090 Msa0773960:intron 40.0%
AGCAAAACCCAAGAGTCATA+AGG + chr5_2:49388081-49388100 None:intergenic 40.0%
CACTGAAAATCAACTGTGAG+GGG - chr5_2:49388154-49388173 Msa0773960:intron 40.0%
! TCGTCATTTGAGCCAACTTT+TGG - chr5_2:49388366-49388385 Msa0773960:CDS 40.0%
! CGTCATTTGAGCCAACTTTT+GGG - chr5_2:49388367-49388386 Msa0773960:CDS 40.0%
! GTCATTTGAGCCAACTTTTG+GGG - chr5_2:49388368-49388387 Msa0773960:CDS 40.0%
GTTAGTTCAACCCCAAAAGT+TGG + chr5_2:49388381-49388400 None:intergenic 40.0%
AAGAGTCAAGACTGGACATA+TGG + chr5_2:49388501-49388520 None:intergenic 40.0%
! TCTTGACTCTTGAAGGTGTA+GGG - chr5_2:49388510-49388529 Msa0773960:intron 40.0%
TTGCCCATATACCCAATTGA+TGG + chr5_2:49388549-49388568 None:intergenic 40.0%
! GTATATGGGCAAGTAGCTTT+TGG - chr5_2:49388557-49388576 Msa0773960:intron 40.0%
! ATATGGGCAAGTAGCTTTTG+GGG - chr5_2:49388559-49388578 Msa0773960:intron 40.0%
!! ATAAATCAGGCTGTTTTCCC+TGG - chr5_2:49388693-49388712 Msa0773960:intron 40.0%
CCTGTAATAGTGTGATTGTG+AGG + chr5_2:49388732-49388751 None:intergenic 40.0%
CCTCACAATCACACTATTAC+AGG - chr5_2:49388729-49388748 Msa0773960:intron 40.0%
! CTTCTACTGATTGTTTAGCC+CGG - chr5_2:49389062-49389081 Msa0773960:intron 40.0%
GAAAGGCTATGACCTTGTAT+CGG - chr5_2:49389143-49389162 Msa0773960:intron 40.0%
AAAGGCTATGACCTTGTATC+GGG - chr5_2:49389144-49389163 Msa0773960:intron 40.0%
!! AACTGAGAACCATTTGGTGT+TGG - chr5_2:49389170-49389189 Msa0773960:intron 40.0%
ATGCTGAGCTTGCATTTACA+TGG - chr5_2:49389328-49389347 Msa0773960:intron 40.0%
CTTATGCTGTTCCATTTGAC+AGG - chr5_2:49389804-49389823 Msa0773960:intron 40.0%
GCCAATAAAAACACTGTTCC+AGG - chr5_2:49389877-49389896 Msa0773960:intron 40.0%
CAGAATGGGTACAGTATATC+AGG - chr5_2:49389930-49389949 Msa0773960:intron 40.0%
CGGTTATGTCTTTGTGATTC+AGG - chr5_2:49390002-49390021 Msa0773960:intron 40.0%
AACTCCTGCTCTTACATCTA+GGG - chr5_2:49390025-49390044 Msa0773960:intron 40.0%
!!! TACATCTAGGGGTTTTGTTG+AGG - chr5_2:49390037-49390056 Msa0773960:intron 40.0%
AGTAGCTGAATACTTTGACG+CGG - chr5_2:49390073-49390092 Msa0773960:intron 40.0%
! GAAGGATTTTGTGGAAGCTA+TGG - chr5_2:49390233-49390252 Msa0773960:intron 40.0%
GCTAAGCAATTTCCCACAAT+TGG - chr5_2:49390315-49390334 Msa0773960:intron 40.0%
!! ACGGAGTTAGTTTCTTTTGG+TGG - chr5_2:49390381-49390400 Msa0773960:CDS 40.0%
!! ATTATATGGGTTGGCGGTAG+TGG + chr5_2:49381933-49381952 None:intergenic 45.0%
! TGTTTGGTGAATTGCGTTGG+AGG + chr5_2:49381976-49381995 None:intergenic 45.0%
ACCAACTTCTCTCTATCGCT+TGG - chr5_2:49382046-49382065 Msa0773960:three_prime_UTR 45.0%
ACCAAGCGATAGAGAGAAGT+TGG + chr5_2:49382050-49382069 None:intergenic 45.0%
GATGACTGCAACAACCAAAC+AGG + chr5_2:49382142-49382161 None:intergenic 45.0%
AAAGTGCAGTGCTTACATCG+GGG + chr5_2:49382198-49382217 None:intergenic 45.0%
AAAAGCTCGTCAATGGAAGG+TGG - chr5_2:49382361-49382380 Msa0773960:CDS 45.0%
! TTTGTGTCAGAAGCGTGCAT+TGG - chr5_2:49382706-49382725 Msa0773960:intron 45.0%
! AAGCGTGCATTGGAAGCTTT+TGG - chr5_2:49382716-49382735 Msa0773960:intron 45.0%
! AGCGTGCATTGGAAGCTTTT+GGG - chr5_2:49382717-49382736 Msa0773960:intron 45.0%
!! TGCATTGGAAGCTTTTGGGT+TGG - chr5_2:49382721-49382740 Msa0773960:intron 45.0%
!! TTGGGTTGGATCCAACACAA+TGG - chr5_2:49382735-49382754 Msa0773960:intron 45.0%
! TGGGTTGGATCCAACACAAT+GGG - chr5_2:49382736-49382755 Msa0773960:intron 45.0%
TATGTACCTCCCCATTGTGT+TGG + chr5_2:49382749-49382768 None:intergenic 45.0%
GCAATGCAATGCAGTTAGCA+TGG + chr5_2:49382893-49382912 None:intergenic 45.0%
ATTGACACAAACATGGACCC+CGG - chr5_2:49382997-49383016 Msa0773960:intron 45.0%
! ACGTGTCATTATCGTATCCG+GGG + chr5_2:49383017-49383036 None:intergenic 45.0%
! ATGCCTTCGATCAGAAGTGT+CGG - chr5_2:49383119-49383138 Msa0773960:intron 45.0%
! TCAGTTGCTAAGAGTGCAAG+TGG - chr5_2:49383180-49383199 Msa0773960:intron 45.0%
! GGGTTCAGTACCTCAGTTTT+TGG - chr5_2:49383567-49383586 Msa0773960:intron 45.0%
TAACATCCTTGTTGCTCTGC+TGG - chr5_2:49384154-49384173 Msa0773960:intron 45.0%
AACATCCTTGTTGCTCTGCT+GGG - chr5_2:49384155-49384174 Msa0773960:intron 45.0%
AATTACCCAGCAGAGCAACA+AGG + chr5_2:49384163-49384182 None:intergenic 45.0%
TTTGTTCGCCTATACTGCAG+AGG + chr5_2:49384241-49384260 None:intergenic 45.0%
ATGTGATAGATGCCCACCAT+GGG + chr5_2:49384403-49384422 None:intergenic 45.0%
TGGCTAGTGCAGACTTTCTA+TGG + chr5_2:49384495-49384514 None:intergenic 45.0%
GCAAGGAAAGATTGTGAGTG+AGG + chr5_2:49385011-49385030 None:intergenic 45.0%
! GGGATTTTTATAGCCTCGGT+AGG - chr5_2:49385090-49385109 Msa0773960:CDS 45.0%
GCTCCCATAGTTAAGGCATA+TGG - chr5_2:49385744-49385763 Msa0773960:intron 45.0%
TAAGGCATATGGTAGGGAGA+AGG - chr5_2:49385755-49385774 Msa0773960:intron 45.0%
AAGGCATATGGTAGGGAGAA+GGG - chr5_2:49385756-49385775 Msa0773960:intron 45.0%
ATATGGTAGGGAGAAGGGAA+TGG - chr5_2:49385761-49385780 Msa0773960:intron 45.0%
TTGAGAAACTTGTGTGGGCA+TGG - chr5_2:49385794-49385813 Msa0773960:intron 45.0%
GTGCTCTTTGGACTTGAAAC+AGG + chr5_2:49386046-49386065 None:intergenic 45.0%
ATCCTCATCCAAGTGCTCTT+TGG + chr5_2:49386058-49386077 None:intergenic 45.0%
TATGACAGGTGGTAACAGAG+GGG - chr5_2:49386173-49386192 Msa0773960:intron 45.0%
TGGTAACAGAGGGGAGAATT+GGG - chr5_2:49386182-49386201 Msa0773960:intron 45.0%
TGGGTTGTGGGAAGGAATTA+TGG - chr5_2:49386201-49386220 Msa0773960:intron 45.0%
GTAGTAACAGAGGGGAGAAT+TGG - chr5_2:49386304-49386323 Msa0773960:intron 45.0%
!! CGATTCTACGATTTTGGTCG+TGG - chr5_2:49386858-49386877 Msa0773960:intron 45.0%
!! TTCTACGATTTTGGTCGTGG+TGG - chr5_2:49386861-49386880 Msa0773960:intron 45.0%
TGATTATGCGCGTATTCGCA+AGG - chr5_2:49387400-49387419 Msa0773960:intron 45.0%
! GGCAGTTATGTTGGCTGATA+TGG - chr5_2:49387535-49387554 Msa0773960:intron 45.0%
!! ATCAGTGGATTAGTTGCTGC+AGG - chr5_2:49387563-49387582 Msa0773960:intron 45.0%
AAGAATATCATAGCCCCACG+TGG + chr5_2:49387656-49387675 None:intergenic 45.0%
GTGGGGCTATGATATTCTTC+AGG - chr5_2:49387657-49387676 Msa0773960:intron 45.0%
!!! TTGTTTTTTGTGGGGGATGG+GGG + chr5_2:49387790-49387809 None:intergenic 45.0%
! ACACTAACTCCCAACGGTTT+TGG - chr5_2:49388001-49388020 Msa0773960:intron 45.0%
CGTATGTGCCTTATGACTCT+TGG - chr5_2:49388070-49388089 Msa0773960:intron 45.0%
CGTATGTGCCTTATGACTCT+TGG - chr5_2:49388070-49388089 Msa0773960:intron 45.0%
TCAACTGTGAGGGGAAAGAA+AGG - chr5_2:49388163-49388182 Msa0773960:intron 45.0%
CAACTGTGAGGGGAAAGAAA+GGG - chr5_2:49388164-49388183 Msa0773960:intron 45.0%
GCTCGAGTATACATCAGATG+TGG + chr5_2:49388341-49388360 None:intergenic 45.0%
TGTCCAGTCTTGACTCTTGA+AGG - chr5_2:49388503-49388522 Msa0773960:intron 45.0%
ACACCTTCAAGAGTCAAGAC+TGG + chr5_2:49388509-49388528 None:intergenic 45.0%
! GTCTTGACTCTTGAAGGTGT+AGG - chr5_2:49388509-49388528 Msa0773960:intron 45.0%
!!! GTAGCTTTTGGGGTTGAGTT+AGG - chr5_2:49388569-49388588 Msa0773960:intron 45.0%
TGGCTCAATTTCATCCTGAC+AGG - chr5_2:49388647-49388666 Msa0773960:intron 45.0%
CTTAGCAGTTGCATTGAAGC+AGG - chr5_2:49388752-49388771 Msa0773960:intron 45.0%
GTTCATGTAGGCTATGACAC+CGG - chr5_2:49388917-49388936 Msa0773960:intron 45.0%
TAACTCCTCGACATTTGCAC+AGG - chr5_2:49388971-49388990 Msa0773960:intron 45.0%
GTTTACCTGTGCAAATGTCG+AGG + chr5_2:49388979-49388998 None:intergenic 45.0%
!! CTGCAGAGCTTGTTAGAGAA+AGG - chr5_2:49389126-49389145 Msa0773960:intron 45.0%
!! TCCATTTGACAGGGCATTGA+TGG - chr5_2:49389814-49389833 Msa0773960:intron 45.0%
GAACTCCTGCTCTTACATCT+AGG - chr5_2:49390024-49390043 Msa0773960:intron 45.0%
ACTCCTGCTCTTACATCTAG+GGG - chr5_2:49390026-49390045 Msa0773960:intron 45.0%
AAACCCCTAGATGTAAGAGC+AGG + chr5_2:49390032-49390051 None:intergenic 45.0%
GATCTCTGCCATGAAGTAGA+AGG - chr5_2:49390288-49390307 Msa0773960:intron 45.0%
AGAATGGTCAGGTGCAGAAA+AGG - chr5_2:49390478-49390497 Msa0773960:intron 45.0%
GAATGGTCAGGTGCAGAAAA+GGG - chr5_2:49390479-49390498 Msa0773960:intron 45.0%
CAAGCAAATTATGTCGCCCA+TGG + chr5_2:49390703-49390722 None:intergenic 45.0%
TGGTGAATTGCGTTGGAGGT+TGG + chr5_2:49381972-49381991 None:intergenic 50.0%
! CAACGATCCTCTTGGTGTAG+TGG - chr5_2:49382307-49382326 Msa0773960:three_prime_UTR 50.0%
TCAGGATCCACTACACCAAG+AGG + chr5_2:49382317-49382336 None:intergenic 50.0%
TTGTCGGTGATGCAAGCTGT+TGG - chr5_2:49382499-49382518 Msa0773960:intron 50.0%
GGTGATGCAAGCTGTTGGAT+CGG - chr5_2:49382504-49382523 Msa0773960:intron 50.0%
CCACCATAGTATCTAGCACC+AGG + chr5_2:49382559-49382578 None:intergenic 50.0%
! CCTGGTGCTAGATACTATGG+TGG - chr5_2:49382556-49382575 Msa0773960:intron 50.0%
GGGTTGGATCCAACACAATG+GGG - chr5_2:49382737-49382756 Msa0773960:intron 50.0%
TTGGATCCAACACAATGGGG+AGG - chr5_2:49382740-49382759 Msa0773960:intron 50.0%
!! TGTCGGTGTAGTGTCGATGT+CGG - chr5_2:49383087-49383106 Msa0773960:intron 50.0%
!! GTAGTGTCGATGTCGGATAC+TGG - chr5_2:49383094-49383113 Msa0773960:intron 50.0%
GAAACTGACGACTACAGCAG+CGG + chr5_2:49383906-49383925 None:intergenic 50.0%
TGTGATAGATGCCCACCATG+GGG + chr5_2:49384402-49384421 None:intergenic 50.0%
CATGTGATAGATGCCCACCA+TGG + chr5_2:49384404-49384423 None:intergenic 50.0%
!! CATGGTGGGCATCTATCACA+TGG - chr5_2:49384402-49384421 Msa0773960:intron 50.0%
GAAAGTCTGCACTAGCCACT+AGG - chr5_2:49384497-49384516 Msa0773960:intron 50.0%
CTTCAAGTGAGACCGGAGTT+AGG + chr5_2:49384976-49384995 None:intergenic 50.0%
TAGGGGTCTTCAAGTGAGAC+CGG + chr5_2:49384983-49385002 None:intergenic 50.0%
GTGCTCTCATCCAACCTGTA+TGG + chr5_2:49385451-49385470 None:intergenic 50.0%
! TACAGGTTGGATGAGAGCAC+TGG - chr5_2:49385451-49385470 Msa0773960:intron 50.0%
TTGACTATGACCAGGTAGGC+AGG - chr5_2:49385479-49385498 Msa0773960:intron 50.0%
TACAATGGTACCTGCCTACC+TGG + chr5_2:49385492-49385511 None:intergenic 50.0%
CCTTAACTATGGGAGCAGCT+TGG + chr5_2:49385740-49385759 None:intergenic 50.0%
CCAAGCTGCTCCCATAGTTA+AGG - chr5_2:49385737-49385756 Msa0773960:intron 50.0%
AGAAACTTGTGTGGGCATGG+AGG - chr5_2:49385797-49385816 Msa0773960:intron 50.0%
GGTTTGTCATCAGCTCGTTG+TGG - chr5_2:49385823-49385842 Msa0773960:intron 50.0%
TAAGAGGAACAGGGACGACA+AGG + chr5_2:49385975-49385994 None:intergenic 50.0%
TGTCGTCCCTGTTCCTCTTA+TGG - chr5_2:49385975-49385994 Msa0773960:intron 50.0%
!! GTCCAAAGAGCACTTGGATG+AGG - chr5_2:49386053-49386072 Msa0773960:intron 50.0%
GTGGTAACAGAGGGGAGAAT+TGG - chr5_2:49386181-49386200 Msa0773960:intron 50.0%
! AGAGGGGAGAATTGGGTTGT+GGG - chr5_2:49386189-49386208 Msa0773960:intron 50.0%
! AGAGGGGAGAATTGGGTTGT+GGG - chr5_2:49386189-49386208 Msa0773960:intron 50.0%
! GGAGAATTGGGTTGTGGGAA+GGG - chr5_2:49386194-49386213 Msa0773960:intron 50.0%
TGGGTTGTGGGAAGGGATTA+TGG - chr5_2:49386324-49386343 Msa0773960:intron 50.0%
CGCCTTAGTACCAATTGCCA+TGG - chr5_2:49386709-49386728 Msa0773960:intron 50.0%
!! TACGATTTTGGTCGTGGTGG+TGG - chr5_2:49386864-49386883 Msa0773960:intron 50.0%
!! CGTGGTGGTGGAACTACAAA+AGG - chr5_2:49386876-49386895 Msa0773960:intron 50.0%
GCTGATATGGCACACATCAG+TGG - chr5_2:49387548-49387567 Msa0773960:intron 50.0%
GTAGTCATACAGCACCTGTC+AGG + chr5_2:49388664-49388683 None:intergenic 50.0%
!! GCTGTTTTCCCTGGACTTCA+AGG - chr5_2:49388702-49388721 Msa0773960:intron 50.0%
! GTTTTCCCTGGACTTCAAGG+TGG - chr5_2:49388705-49388724 Msa0773960:intron 50.0%
TCTCAGTTCCACCCGATACA+AGG + chr5_2:49389158-49389177 None:intergenic 50.0%
GGGTGGAACTGAGAACCATT+TGG - chr5_2:49389164-49389183 Msa0773960:intron 50.0%
GCCATCAATGCCCTGTCAAA+TGG + chr5_2:49389818-49389837 None:intergenic 50.0%
!! ACAGGGCATTGATGGCTCAA+GGG - chr5_2:49389822-49389841 Msa0773960:intron 50.0%
TGATGGCTCAAGGGTTGAGA+AGG - chr5_2:49389831-49389850 Msa0773960:intron 50.0%
TCCAGGAGATGTGTCTGCAA+TGG - chr5_2:49389894-49389913 Msa0773960:intron 50.0%
ACCATTGCAGACACATCTCC+TGG + chr5_2:49389898-49389917 None:intergenic 50.0%
GATGTGTCTGCAATGGTTCC+TGG - chr5_2:49389901-49389920 Msa0773960:intron 50.0%
TGTCTGCAATGGTTCCTGGA+GGG - chr5_2:49389905-49389924 Msa0773960:intron 50.0%
GTTCCTGGAGGGATCAGAAT+GGG - chr5_2:49389916-49389935 Msa0773960:intron 50.0%
TTGACTCCCTAGCTAAGCCA+TGG - chr5_2:49390683-49390702 Msa0773960:exon 50.0%
TGACTCCCTAGCTAAGCCAT+GGG - chr5_2:49390684-49390703 Msa0773960:exon 50.0%
TAGTGGAACGTGAGTGAGCG+TGG + chr5_2:49381916-49381935 None:intergenic 55.0%
!! CGTTGGAGGTTGGTGTGTGT+GGG + chr5_2:49381962-49381981 None:intergenic 55.0%
! AGTGAGTCTGCGAAGTGCCA+TGG + chr5_2:49382012-49382031 None:intergenic 55.0%
! GCACCGACACTTCTGATCGA+AGG + chr5_2:49383125-49383144 None:intergenic 55.0%
ATGGCACTTGATCTCCCCCA+TGG - chr5_2:49384384-49384403 Msa0773960:intron 55.0%
CACTTGATCTCCCCCATGGT+GGG - chr5_2:49384388-49384407 Msa0773960:intron 55.0%
GTGATAGATGCCCACCATGG+GGG + chr5_2:49384401-49384420 None:intergenic 55.0%
!! TGCATTGGCTTAGCCTACCG+AGG + chr5_2:49385106-49385125 None:intergenic 55.0%
CTTGTGTGGGCATGGAGGAA+AGG - chr5_2:49385802-49385821 Msa0773960:intron 55.0%
! CAGAGGGGAGAATTGGGTTG+TGG - chr5_2:49386188-49386207 Msa0773960:intron 55.0%
! GGGAGAATTGGGTTGTGGGA+AGG - chr5_2:49386193-49386212 Msa0773960:intron 55.0%
! CAGAGGGGAGAATTGGGTTG+TGG - chr5_2:49386188-49386207 Msa0773960:intron 55.0%
! GGGAGAATTGGGTTGTGGGA+AGG - chr5_2:49386193-49386212 Msa0773960:intron 55.0%
GAGGACCACCTTGAAGTCCA+GGG + chr5_2:49388713-49388732 None:intergenic 55.0%
TGAGGACCACCTTGAAGTCC+AGG + chr5_2:49388714-49388733 None:intergenic 55.0%
GGCTATGACCTTGTATCGGG+TGG - chr5_2:49389147-49389166 Msa0773960:intron 55.0%
!! GACAGGGCATTGATGGCTCA+AGG - chr5_2:49389821-49389840 Msa0773960:intron 55.0%
GTGTCTGCAATGGTTCCTGG+AGG - chr5_2:49389904-49389923 Msa0773960:intron 55.0%
GGTTCCTGGAGGGATCAGAA+TGG - chr5_2:49389915-49389934 Msa0773960:intron 55.0%
GTACCCATTCTGATCCCTCC+AGG + chr5_2:49389922-49389941 None:intergenic 55.0%
TGTCGCCCATGGCTTAGCTA+GGG + chr5_2:49390692-49390711 None:intergenic 55.0%
ATGTCGCCCATGGCTTAGCT+AGG + chr5_2:49390693-49390712 None:intergenic 55.0%
ACGTGAGTGAGCGTGGTTGG+TGG + chr5_2:49381909-49381928 None:intergenic 60.0%
GGAACGTGAGTGAGCGTGGT+TGG + chr5_2:49381912-49381931 None:intergenic 60.0%
!! GCGTTGGAGGTTGGTGTGTG+TGG + chr5_2:49381963-49381982 None:intergenic 60.0%
GCACTTGATCTCCCCCATGG+TGG - chr5_2:49384387-49384406 Msa0773960:intron 60.0%
AAGTCACTTCGTGGGCCACG+TGG - chr5_2:49387638-49387657 Msa0773960:intron 60.0%
AGTCACTTCGTGGGCCACGT+GGG - chr5_2:49387639-49387658 Msa0773960:intron 60.0%
GTCACTTCGTGGGCCACGTG+GGG - chr5_2:49387640-49387659 Msa0773960:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 49381891 49390808 49381891 ID=Msa0773960;Name=Msa0773960
chr5_2 mRNA 49381891 49390808 49381891 ID=Msa0773960-mRNA-1;Parent=Msa0773960;Name=Msa0773960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=114|1|1|1|1|1|15|437|507
chr5_2 exon 49381891 49382476 49381891 ID=Msa0773960-mRNA-1:exon:14851;Parent=Msa0773960-mRNA-1
chr5_2 exon 49382565 49382675 49382565 ID=Msa0773960-mRNA-1:exon:14850;Parent=Msa0773960-mRNA-1
chr5_2 exon 49382762 49382873 49382762 ID=Msa0773960-mRNA-1:exon:14849;Parent=Msa0773960-mRNA-1
chr5_2 exon 49383490 49383567 49383490 ID=Msa0773960-mRNA-1:exon:14848;Parent=Msa0773960-mRNA-1
chr5_2 exon 49383707 49383772 49383707 ID=Msa0773960-mRNA-1:exon:14847;Parent=Msa0773960-mRNA-1
chr5_2 exon 49383926 49384030 49383926 ID=Msa0773960-mRNA-1:exon:14846;Parent=Msa0773960-mRNA-1
chr5_2 exon 49384984 49385181 49384984 ID=Msa0773960-mRNA-1:exon:14845;Parent=Msa0773960-mRNA-1
chr5_2 exon 49385278 49385370 49385278 ID=Msa0773960-mRNA-1:exon:14844;Parent=Msa0773960-mRNA-1
chr5_2 exon 49387207 49387299 49387207 ID=Msa0773960-mRNA-1:exon:14843;Parent=Msa0773960-mRNA-1
chr5_2 exon 49388268 49388392 49388268 ID=Msa0773960-mRNA-1:exon:14842;Parent=Msa0773960-mRNA-1
chr5_2 exon 49389938 49390014 49389938 ID=Msa0773960-mRNA-1:exon:14841;Parent=Msa0773960-mRNA-1
chr5_2 exon 49390115 49390236 49390115 ID=Msa0773960-mRNA-1:exon:14840;Parent=Msa0773960-mRNA-1
chr5_2 exon 49390320 49390406 49390320 ID=Msa0773960-mRNA-1:exon:14839;Parent=Msa0773960-mRNA-1
chr5_2 exon 49390498 49390542 49390498 ID=Msa0773960-mRNA-1:exon:14838;Parent=Msa0773960-mRNA-1
chr5_2 exon 49390632 49390808 49390632 ID=Msa0773960-mRNA-1:exon:14837;Parent=Msa0773960-mRNA-1
chr5_2 five_prime_UTR 49390695 49390808 49390695 ID=Msa0773960-mRNA-1:five_prime_utr;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49390632 49390694 49390632 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49390498 49390542 49390498 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49390320 49390406 49390320 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49390115 49390236 49390115 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49389938 49390014 49389938 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49388268 49388392 49388268 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49387207 49387299 49387207 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49385278 49385370 49385278 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49384984 49385181 49384984 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49383926 49384030 49383926 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49383707 49383772 49383707 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49383490 49383567 49383490 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49382762 49382873 49382762 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49382565 49382675 49382565 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 CDS 49382328 49382476 49382328 ID=Msa0773960-mRNA-1:cds;Parent=Msa0773960-mRNA-1
chr5_2 three_prime_UTR 49381891 49382327 49381891 ID=Msa0773960-mRNA-1:three_prime_utr;Parent=Msa0773960-mRNA-1
Gene Sequence

>Msa0773960

ATGGCCATGGCACTTCGCAGACTCACTTCCACCATCAACAAACCAACTTCTCTCTATCGCTTGTCATCTTCTCTCTCAGCTCAACACACTCACAAATCTCACCCCGATTGGATTAAACAACTCAACGATCCTCTTGGTGTAGTGGATCCTGAGATCGAAGATATAATCGAACTTGAAAAAGCTCGTCAATGGAAGGGACTAGAGCTTATACCTTCAGAAAATTTTACGTCGTTGTCGGTGATGCAAGCTGTTGGATCGGTTATGACGAATAAATACAGTGAAGGTTATCCTGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACTTTGTGTCAGAAGCGTGCATTGGAAGCTTTTGGGTTGGATCCAACACAATGGGGAGTCAATGTGCAGTCATTATCTGGATCTCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTCCCCCATGGTGGGCATCTATCACATGGATATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACAATGCCATACAGGTTGGATGAGAGCACTGGTTATATTGACTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCCGGTGCTAGTGCTTATGCCCGTCTTTATGATTATGCGCGTATTCGCAAGGTCTGTGATAAACAGAAGGCAGTTATGTTGGCTGATATGGCACACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGGCCACGTGGGGCTATGATATTCTTCAGGAAGGGTCTGAAAGAGATAAACAAGAAAGGGCAGGAAGTGCTGTATGACTACGAAGACAAGATAAATCAGGCTGTTTTCCCTGGACTTCAAGGTGGTCCTCACAATCACACTATTACAGGCTTAGCAGTTGCATTGAAGCAGGCTATGACACCGGAATTCAAGAATTACCAGAAACAAGTTCTTAGTAACTCCTCGACATTTGCACAGAGCTTGTTAGAGAAAGGCTATGACCTTGTATCGGGTGGAACTGAGAACCATTTGGTGTTGGTAAACTTAAGAAACAAGGGCATTGATGGCTCAAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAACACTGTTCCAGGAGATGTGTCTGCAATGGTTCCTGGAGGGATCAGAATGGGAACTCCTGCTCTTACATCTAGGGGTTTTGTTGAGGATGATTTTAAAAAAGTAGCTGAATACTTTGACGCGGCTGTCAAAATAGCCTTACAAATTAAGGAAAATTCTAAAGGCACAAAGTTGAAGGATTTTGTGGAAGCTATGGAGTCAGATTCACAAGTTCAATCTCAAATCGCTGATCTCTGCCATGAAGTAGAAGGTTATGCTAAGCAATTTCCCACAATTGGTTTTGAGATAGAGACAATGAAGTATAAGAAGTGA

Protein sequence

>Msa0773960

MAMALRRLTSTINKPTSLYRLSSSLSAQHTHKSHPDWIKQLNDPLGVVDPEIEDIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFGLDPTQWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQKQVLSNSSTFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEDDFKKVAEYFDAAVKIALQIKENSKGTKLKDFVEAMESDSQVQSQIADLCHEVEGYAKQFPTIGFEIETMKYKK*