Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045080 | Msa0045140 | 0.845749 | 3.345154e-59 | -8.615850e-47 |
Msa0045090 | Msa0045140 | 0.939242 | 1.765905e-99 | -8.615850e-47 |
Msa0045100 | Msa0045140 | 0.884604 | 1.664570e-71 | -8.615850e-47 |
Msa0045120 | Msa0045140 | 0.938985 | 2.712634e-99 | -8.615850e-47 |
Msa0045140 | Msa0045150 | 0.955683 | 1.723292e-113 | -8.615850e-47 |
Msa0045140 | Msa0045160 | 0.889140 | 3.161650e-73 | -8.615850e-47 |
Msa0045140 | Msa0045180 | 0.825655 | 4.163069e-54 | -8.615850e-47 |
Msa0045140 | Msa0045190 | 0.847107 | 1.425568e-59 | -8.615850e-47 |
Msa0045140 | Msa0045350 | 0.942590 | 5.492763e-102 | -8.615850e-47 |
Msa0045140 | Msa0045370 | 0.919110 | 6.778405e-87 | -8.615850e-47 |
Msa0045140 | Msa0045380 | 0.863445 | 2.476607e-64 | -8.615850e-47 |
Msa0045140 | Msa0045400 | 0.911756 | 4.238572e-83 | -8.615850e-47 |
Msa0045140 | Msa0045440 | 0.820583 | 6.351549e-53 | -8.615850e-47 |
Msa0045140 | Msa0484480 | 0.819367 | 1.205448e-52 | -8.615850e-47 |
Msa0045140 | Msa1084980 | 0.831243 | 1.863977e-55 | -8.615850e-47 |
Msa0045140 | Msa1085000 | 0.926069 | 7.773498e-91 | -8.615850e-47 |
Msa0045140 | Msa1085010 | 0.864083 | 1.568902e-64 | -8.615850e-47 |
Msa0045140 | Msa1426790 | 0.884143 | 2.465188e-71 | -8.615850e-47 |
Msa0045140 | Msa1426820 | 0.880095 | 7.277910e-70 | -8.615850e-47 |
Msa0045140 | Msa1426840 | 0.868471 | 6.373266e-66 | -8.615850e-47 |
Msa0045140 | Msa1432570 | 0.824288 | 8.752356e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0045140 | MtrunA17_Chr2g0301881 | 49.485 | 97 | 20 | 1 | 1 | 68 | 246 | 342 | 1.84e-17 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 21 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 1_1:-76840390 | Msa0045140:CDS |
TCTTTATTACTGTTTGTTCT+TGG | 0.257547 | 1_1:-76840486 | Msa0045140:CDS |
CACAAAATTTGTTGAATACA+TGG | 0.358653 | 1_1:-76841618 | Msa0045140:CDS |
TGCAACATACATTTAACCTT+TGG | 0.369964 | 1_1:-76840344 | Msa0045140:CDS |
ATGCAGCTGGGAACACGTTC+AGG | 0.372158 | 1_1:+76840301 | None:intergenic |
GAAGAGGTTGTCCTTCGAAC+TGG | 0.406908 | 1_1:+76841590 | None:intergenic |
CAAGTCTAAATGTATGCAGC+TGG | 0.433392 | 1_1:+76840288 | None:intergenic |
ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 1_1:+76841298 | None:intergenic |
TAGTCAATGAAGACAGCGTT+TGG | 0.456859 | 1_1:-76840510 | Msa0045140:CDS |
CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 1_1:+76841305 | None:intergenic |
ATGCAGGCGAGGTGCTGTCT+CGG | 0.514779 | 1_1:+76841267 | None:intergenic |
AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 1_1:-76840405 | Msa0045140:CDS |
CCTTCATTAGCTCTTCATGC+AGG | 0.532164 | 1_1:+76841251 | None:intergenic |
ACATGGAAATTCCAGTTCGA+AGG | 0.590375 | 1_1:-76841601 | Msa0045140:CDS |
AACATAATAAGCTTCTGAAG+AGG | 0.600221 | 1_1:+76841574 | None:intergenic |
CCTGCATGAAGAGCTAATGA+AGG | 0.605404 | 1_1:-76841251 | Msa0045140:intron |
ATTAGCTCTTCATGCAGGCG+AGG | 0.608084 | 1_1:+76841256 | None:intergenic |
CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 1_1:+76840390 | None:intergenic |
AAGTCTAAATGTATGCAGCT+GGG | 0.631360 | 1_1:+76840289 | None:intergenic |
ATTCTAGAGTGATATACCAA+AGG | 0.636013 | 1_1:+76840328 | None:intergenic |
ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 1_1:+76841306 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATATGATATGTTTTAAT+AGG | - | chr1_1:76840892-76840911 | Msa0045140:intron | 10.0% |
!!! | TTTATATGATATGTTTTAAT+AGG | - | chr1_1:76840892-76840911 | Msa0045140:intron | 10.0% |
!! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:76840483-76840502 | None:intergenic | 15.0% |
!!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:76840791-76840810 | Msa0045140:intron | 15.0% |
!!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:76840792-76840811 | Msa0045140:intron | 15.0% |
!!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:76840827-76840846 | Msa0045140:intron | 15.0% |
!! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:76840986-76841005 | None:intergenic | 15.0% |
!! | CAAAAAAAGAATACATTATT+TGG | + | chr1_1:76840483-76840502 | None:intergenic | 15.0% |
!!! | TATTTTACTTATTGAAAAAC+TGG | - | chr1_1:76840791-76840810 | Msa0045140:intron | 15.0% |
!!! | ATTTTACTTATTGAAAAACT+GGG | - | chr1_1:76840792-76840811 | Msa0045140:intron | 15.0% |
!!! | AAACTACATAAATTTAAAGT+AGG | - | chr1_1:76840827-76840846 | Msa0045140:intron | 15.0% |
!! | TGATAATCTTAATTTAAATG+TGG | + | chr1_1:76840986-76841005 | None:intergenic | 15.0% |
!!! | CACAAAATTTGTTGAATACA+TGG | - | chr1_1:76840304-76840323 | Msa0045140:CDS | 25.0% |
! | TCTAAACGAAAATATCATAG+GGG | + | chr1_1:76840552-76840571 | None:intergenic | 25.0% |
! | GTCTAAACGAAAATATCATA+GGG | + | chr1_1:76840553-76840572 | None:intergenic | 25.0% |
! | TGTCTAAACGAAAATATCAT+AGG | + | chr1_1:76840554-76840573 | None:intergenic | 25.0% |
! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:76840722-76840741 | None:intergenic | 25.0% |
! | ATACTTAACAGTAAGATGAA+CGG | + | chr1_1:76840766-76840785 | None:intergenic | 25.0% |
! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:76841114-76841133 | None:intergenic | 25.0% |
! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:76841225-76841244 | None:intergenic | 25.0% |
!! | TATGATTTTTCTCTGAACTT+TGG | - | chr1_1:76841347-76841366 | Msa0045140:CDS | 25.0% |
!! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:76841402-76841421 | None:intergenic | 25.0% |
! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:76841436-76841455 | Msa0045140:intron | 25.0% |
!!! | CACAAAATTTGTTGAATACA+TGG | - | chr1_1:76840304-76840323 | Msa0045140:CDS | 25.0% |
! | TCTAAACGAAAATATCATAG+GGG | + | chr1_1:76840552-76840571 | None:intergenic | 25.0% |
! | GTCTAAACGAAAATATCATA+GGG | + | chr1_1:76840553-76840572 | None:intergenic | 25.0% |
! | TGTCTAAACGAAAATATCAT+AGG | + | chr1_1:76840554-76840573 | None:intergenic | 25.0% |
! | ATCGAATCTAATCTATCAAA+AGG | + | chr1_1:76840722-76840741 | None:intergenic | 25.0% |
! | ATACTTAACAGTAAGATGAA+CGG | + | chr1_1:76840766-76840785 | None:intergenic | 25.0% |
! | CATGAAATATATAAAGAGAC+TGG | + | chr1_1:76841114-76841133 | None:intergenic | 25.0% |
! | AAAGAAATTGTTGTAGATGA+AGG | + | chr1_1:76841225-76841244 | None:intergenic | 25.0% |
!! | TATGATTTTTCTCTGAACTT+TGG | - | chr1_1:76841347-76841366 | Msa0045140:CDS | 25.0% |
!! | TCATTGACTAGTAAATTGAA+AGG | + | chr1_1:76841402-76841421 | None:intergenic | 25.0% |
! | TCTTTATTACTGTTTGTTCT+TGG | - | chr1_1:76841436-76841455 | Msa0045140:intron | 25.0% |
! | AACATAATAAGCTTCTGAAG+AGG | + | chr1_1:76840351-76840370 | None:intergenic | 30.0% |
ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:76840627-76840646 | None:intergenic | 30.0% | |
! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:76840628-76840647 | Msa0045140:intron | 30.0% |
!! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:76840967-76840986 | None:intergenic | 30.0% |
GTCATCATTATCTTATGTGA+TGG | - | chr1_1:76841016-76841035 | Msa0045140:intron | 30.0% | |
TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:76841199-76841218 | None:intergenic | 30.0% | |
! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:76841237-76841256 | Msa0045140:intron | 30.0% |
TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:76841260-76841279 | Msa0045140:CDS | 30.0% | |
GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:76841261-76841280 | Msa0045140:CDS | 30.0% | |
! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:76841561-76841580 | None:intergenic | 30.0% |
TGCAACATACATTTAACCTT+TGG | - | chr1_1:76841578-76841597 | Msa0045140:CDS | 30.0% | |
!! | ATTCTAGAGTGATATACCAA+AGG | + | chr1_1:76841597-76841616 | None:intergenic | 30.0% |
! | AACATAATAAGCTTCTGAAG+AGG | + | chr1_1:76840351-76840370 | None:intergenic | 30.0% |
ATGAAATCACTTGCAAAAGA+TGG | + | chr1_1:76840627-76840646 | None:intergenic | 30.0% | |
! | CTTTTGCAAGTGATTTCATA+CGG | - | chr1_1:76840628-76840647 | Msa0045140:intron | 30.0% |
!! | GTGGTTATCATCTTTAGTTT+TGG | + | chr1_1:76840967-76840986 | None:intergenic | 30.0% |
GTCATCATTATCTTATGTGA+TGG | - | chr1_1:76841016-76841035 | Msa0045140:intron | 30.0% | |
TAAATGCAAGCGATAAGAAA+AGG | + | chr1_1:76841199-76841218 | None:intergenic | 30.0% | |
! | ATTTCTTTTCCTATGCAACT+AGG | - | chr1_1:76841237-76841256 | Msa0045140:intron | 30.0% |
TGTAAATCAATTGTTGTACC+AGG | - | chr1_1:76841260-76841279 | Msa0045140:CDS | 30.0% | |
GTAAATCAATTGTTGTACCA+GGG | - | chr1_1:76841261-76841280 | Msa0045140:CDS | 30.0% | |
! | GCACATTTTCTATAACTTCT+TGG | + | chr1_1:76841561-76841580 | None:intergenic | 30.0% |
TGCAACATACATTTAACCTT+TGG | - | chr1_1:76841578-76841597 | Msa0045140:CDS | 30.0% | |
!! | ATTCTAGAGTGATATACCAA+AGG | + | chr1_1:76841597-76841616 | None:intergenic | 30.0% |
TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:76841153-76841172 | Msa0045140:intron | 35.0% | |
CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:76841154-76841173 | Msa0045140:intron | 35.0% | |
TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:76841249-76841268 | None:intergenic | 35.0% | |
! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:76841503-76841522 | Msa0045140:intron | 35.0% |
TCAACAGTTGCTAAAGTAAG+AGG | - | chr1_1:76841153-76841172 | Msa0045140:intron | 35.0% | |
CAACAGTTGCTAAAGTAAGA+GGG | - | chr1_1:76841154-76841173 | Msa0045140:intron | 35.0% | |
TGATTTACACCTAGTTGCAT+AGG | + | chr1_1:76841249-76841268 | None:intergenic | 35.0% | |
! | TTTTGTTGATACAGAGAGCT+TGG | - | chr1_1:76841503-76841522 | Msa0045140:intron | 35.0% |
ACATGGAAATTCCAGTTCGA+AGG | - | chr1_1:76840321-76840340 | Msa0045140:CDS | 40.0% | |
GCTCTTGCTTAATGTTCTTG+AGG | + | chr1_1:76840398-76840417 | None:intergenic | 40.0% | |
ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:76840619-76840638 | None:intergenic | 40.0% | |
TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:76841412-76841431 | Msa0045140:intron | 40.0% | |
ACATGGAAATTCCAGTTCGA+AGG | - | chr1_1:76840321-76840340 | Msa0045140:CDS | 40.0% | |
GCTCTTGCTTAATGTTCTTG+AGG | + | chr1_1:76840398-76840417 | None:intergenic | 40.0% | |
ACTTGCAAAAGATGGAGACA+GGG | + | chr1_1:76840619-76840638 | None:intergenic | 40.0% | |
TAGTCAATGAAGACAGCGTT+TGG | - | chr1_1:76841412-76841431 | Msa0045140:intron | 40.0% | |
! | AGCAAGAGCAGACCAAGTTT+TGG | - | chr1_1:76840409-76840428 | Msa0045140:CDS | 45.0% |
CACGATGCTCTTCCAAAACT+TGG | + | chr1_1:76840424-76840443 | None:intergenic | 45.0% | |
TCATAGGGGTGAGCACAAAA+AGG | + | chr1_1:76840538-76840557 | None:intergenic | 45.0% | |
CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:76840620-76840639 | None:intergenic | 45.0% | |
! | CCTTCATTAGCTCTTCATGC+AGG | + | chr1_1:76840674-76840693 | None:intergenic | 45.0% |
CCTGCATGAAGAGCTAATGA+AGG | - | chr1_1:76840671-76840690 | Msa0045140:intron | 45.0% | |
GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:76840678-76840697 | Msa0045140:intron | 45.0% | |
ATATAAACCCACACTCCCAC+AGG | + | chr1_1:76840879-76840898 | None:intergenic | 45.0% | |
! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:76841097-76841116 | None:intergenic | 45.0% |
ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:76841281-76841300 | None:intergenic | 45.0% | |
CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:76841535-76841554 | None:intergenic | 45.0% | |
! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:76841532-76841551 | Msa0045140:intron | 45.0% |
!!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:76841535-76841554 | Msa0045140:intron | 45.0% |
! | AGCAAGAGCAGACCAAGTTT+TGG | - | chr1_1:76840409-76840428 | Msa0045140:CDS | 45.0% |
CACGATGCTCTTCCAAAACT+TGG | + | chr1_1:76840424-76840443 | None:intergenic | 45.0% | |
TCATAGGGGTGAGCACAAAA+AGG | + | chr1_1:76840538-76840557 | None:intergenic | 45.0% | |
CACTTGCAAAAGATGGAGAC+AGG | + | chr1_1:76840620-76840639 | None:intergenic | 45.0% | |
! | CCTTCATTAGCTCTTCATGC+AGG | + | chr1_1:76840674-76840693 | None:intergenic | 45.0% |
CCTGCATGAAGAGCTAATGA+AGG | - | chr1_1:76840671-76840690 | Msa0045140:intron | 45.0% | |
GAAGAGCTAATGAAGGTGAC+TGG | - | chr1_1:76840678-76840697 | Msa0045140:intron | 45.0% | |
ATATAAACCCACACTCCCAC+AGG | + | chr1_1:76840879-76840898 | None:intergenic | 45.0% | |
! | GACTGGAGCATTAGACAATG+AGG | + | chr1_1:76841097-76841116 | None:intergenic | 45.0% |
ATTCGCATTGCTTCAAACCC+TGG | + | chr1_1:76841281-76841300 | None:intergenic | 45.0% | |
CCAAAATAAGCACGACCAAG+AGG | + | chr1_1:76841535-76841554 | None:intergenic | 45.0% | |
! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr1_1:76841532-76841551 | Msa0045140:intron | 45.0% |
!!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr1_1:76841535-76841554 | Msa0045140:intron | 45.0% |
GAAGAGGTTGTCCTTCGAAC+TGG | + | chr1_1:76840335-76840354 | None:intergenic | 50.0% | |
!! | AGAGCATCGTGTACTAGCAG+AGG | - | chr1_1:76840433-76840452 | Msa0045140:CDS | 50.0% |
! | ATTAGCTCTTCATGCAGGCG+AGG | + | chr1_1:76840669-76840688 | None:intergenic | 50.0% |
AGTAGGCTGAACTGCACTTG+TGG | - | chr1_1:76840844-76840863 | Msa0045140:intron | 50.0% | |
TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:76840861-76840880 | Msa0045140:intron | 50.0% | |
!! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:76841517-76841536 | Msa0045140:intron | 50.0% |
GAAGAGGTTGTCCTTCGAAC+TGG | + | chr1_1:76840335-76840354 | None:intergenic | 50.0% | |
!! | AGAGCATCGTGTACTAGCAG+AGG | - | chr1_1:76840433-76840452 | Msa0045140:CDS | 50.0% |
! | ATTAGCTCTTCATGCAGGCG+AGG | + | chr1_1:76840669-76840688 | None:intergenic | 50.0% |
AGTAGGCTGAACTGCACTTG+TGG | - | chr1_1:76840844-76840863 | Msa0045140:intron | 50.0% | |
TTGTGGCAAGCTCTTCCTGT+GGG | - | chr1_1:76840861-76840880 | Msa0045140:intron | 50.0% | |
!! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr1_1:76841517-76841536 | Msa0045140:intron | 50.0% |
CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:76840860-76840879 | Msa0045140:intron | 55.0% | |
AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:76840868-76840887 | Msa0045140:intron | 55.0% | |
! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:76840869-76840888 | Msa0045140:intron | 55.0% |
ATGCAGCTGGGAACACGTTC+AGG | + | chr1_1:76841624-76841643 | None:intergenic | 55.0% | |
CTTGTGGCAAGCTCTTCCTG+TGG | - | chr1_1:76840860-76840879 | Msa0045140:intron | 55.0% | |
AAGCTCTTCCTGTGGGAGTG+TGG | - | chr1_1:76840868-76840887 | Msa0045140:intron | 55.0% | |
! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr1_1:76840869-76840888 | Msa0045140:intron | 55.0% |
ATGCAGCTGGGAACACGTTC+AGG | + | chr1_1:76841624-76841643 | None:intergenic | 55.0% | |
!! | ATGCAGGCGAGGTGCTGTCT+CGG | + | chr1_1:76840658-76840677 | None:intergenic | 60.0% |
!! | ATGCAGGCGAGGTGCTGTCT+CGG | + | chr1_1:76840658-76840677 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 76840293 | 76841651 | 76840293 | ID=Msa0045140;Name=Msa0045140 |
chr1_1 | mRNA | 76840293 | 76841651 | 76840293 | ID=Msa0045140-mRNA-1;Parent=Msa0045140;Name=Msa0045140-mRNA-1;_AED=0.44;_eAED=0.85;_QI=0|0|0.33|1|1|1|3|0|146 |
chr1_1 | exon | 76841566 | 76841651 | 76841566 | ID=Msa0045140-mRNA-1:exon:26265;Parent=Msa0045140-mRNA-1 |
chr1_1 | exon | 76841252 | 76841369 | 76841252 | ID=Msa0045140-mRNA-1:exon:26264;Parent=Msa0045140-mRNA-1 |
chr1_1 | exon | 76840293 | 76840529 | 76840293 | ID=Msa0045140-mRNA-1:exon:26263;Parent=Msa0045140-mRNA-1 |
chr1_1 | CDS | 76841566 | 76841651 | 76841566 | ID=Msa0045140-mRNA-1:cds;Parent=Msa0045140-mRNA-1 |
chr1_1 | CDS | 76841252 | 76841369 | 76841252 | ID=Msa0045140-mRNA-1:cds;Parent=Msa0045140-mRNA-1 |
chr1_1 | CDS | 76840293 | 76840529 | 76840293 | ID=Msa0045140-mRNA-1:cds;Parent=Msa0045140-mRNA-1 |
Gene Sequence |
Protein sequence |