Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045080 | Msa1085000 | 0.868083 | 8.499987e-66 | -8.615850e-47 |
| Msa0045090 | Msa1085000 | 0.981252 | 3.870024e-152 | -8.615850e-47 |
| Msa0045100 | Msa1085000 | 0.885943 | 5.256691e-72 | -8.615850e-47 |
| Msa0045120 | Msa1085000 | 0.940520 | 2.027798e-100 | -8.615850e-47 |
| Msa0045140 | Msa1085000 | 0.926069 | 7.773498e-91 | -8.615850e-47 |
| Msa0045150 | Msa1085000 | 0.944177 | 3.146398e-103 | -8.615850e-47 |
| Msa0045160 | Msa1085000 | 0.889770 | 1.798105e-73 | -8.615850e-47 |
| Msa0045190 | Msa1085000 | 0.865640 | 5.098535e-65 | -8.615850e-47 |
| Msa0045350 | Msa1085000 | 0.951051 | 4.606531e-109 | -8.615850e-47 |
| Msa0045370 | Msa1085000 | 0.933307 | 2.292039e-95 | -8.615850e-47 |
| Msa0045380 | Msa1085000 | 0.861253 | 1.168200e-63 | -8.615850e-47 |
| Msa0045400 | Msa1085000 | 0.904188 | 1.593424e-79 | -8.615850e-47 |
| Msa0045440 | Msa1085000 | 0.833073 | 6.573280e-56 | -8.615850e-47 |
| Msa1084980 | Msa1085000 | 0.863693 | 2.074750e-64 | -8.615850e-47 |
| Msa1085000 | Msa1085010 | 0.866615 | 2.505103e-65 | -8.615850e-47 |
| Msa1085000 | Msa1426790 | 0.907923 | 2.997438e-81 | -8.615850e-47 |
| Msa1085000 | Msa1426820 | 0.878069 | 3.784415e-69 | -8.615850e-47 |
| Msa1085000 | Msa1426840 | 0.878772 | 2.142135e-69 | -8.615850e-47 |
| Msa1085000 | Msa1432570 | 0.836554 | 8.740683e-57 | -8.615850e-47 |
| Msa0484480 | Msa1085000 | 0.832468 | 9.294372e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085000 | MtrunA17_Chr2g0301881 | 76.190 | 42 | 10 | 0 | 40 | 81 | 303 | 344 | 1.02e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGGTCGTGCTTATTT+TGG | 0.178155 | 7_2:-85388677 | Msa1085000:CDS |
| ATCAATTTATTTCAAGTAGT+TGG | 0.311082 | 7_2:-85388471 | Msa1085000:three_prime_UTR |
| AGCTGCATACATTTAACCTT+TGG | 0.369719 | 7_2:-85388574 | Msa1085000:three_prime_UTR |
| TGGACTAGGTGTAAATCTAT+TGG | 0.372492 | 7_2:-85388451 | Msa1085000:three_prime_UTR |
| AACAAGTTGTTTAATAGCAT+TGG | 0.401520 | 7_2:-85388497 | Msa1085000:three_prime_UTR |
| ATGCAGCTCGGAACACGTTC+AGG | 0.405907 | 7_2:+85388589 | None:intergenic |
| TTAATTTCATAGCACGTAGC+TGG | 0.411589 | 7_2:+85388518 | None:intergenic |
| ATGAAATCACTTGCAAAAGA+TGG | 0.438991 | 7_2:+85389599 | None:intergenic |
| GGACTAGGTGTAAATCTATT+GGG | 0.449499 | 7_2:-85388450 | Msa1085000:three_prime_UTR |
| CACTTGCAAAAGATGGAGAC+AGG | 0.478454 | 7_2:+85389606 | None:intergenic |
| AGAGCTTGGTGTAGTCCTCT+TGG | 0.517761 | 7_2:-85388692 | Msa1085000:CDS |
| TTATTTCAAGTAGTTGGACT+AGG | 0.530204 | 7_2:-85388465 | Msa1085000:three_prime_UTR |
| GTGCAACATACATTTAACCT+TGG | 0.533755 | 7_2:-85388632 | Msa1085000:CDS |
| CCTTCATTAGCTCTTCAAGC+AGG | 0.534184 | 7_2:+85389552 | None:intergenic |
| TGTCACGTCTTCTGATTCTC+CGG | 0.535001 | 7_2:-85391573 | Msa1085000:intron |
| TAATTTCATAGCACGTAGCT+GGG | 0.547817 | 7_2:+85388519 | None:intergenic |
| AAGAAAACGACGGGATTGAG+AGG | 0.586955 | 7_2:+85391610 | None:intergenic |
| TCGATTGAGAAGAAAACGAC+GGG | 0.590073 | 7_2:+85391601 | None:intergenic |
| CCTGCTTGAAGAGCTAATGA+AGG | 0.599554 | 7_2:-85389552 | Msa1085000:intron |
| ATTAGCTCTTCAAGCAGGCG+AGG | 0.618540 | 7_2:+85389557 | None:intergenic |
| CCAAAATAAGCACGACCAAG+AGG | 0.622212 | 7_2:+85388677 | None:intergenic |
| AAGGTTAAATGTATGCAGCT+CGG | 0.635793 | 7_2:+85388577 | None:intergenic |
| ACTCTAGAGTGATATACCAA+AGG | 0.656240 | 7_2:+85388558 | None:intergenic |
| CTCGATTGAGAAGAAAACGA+CGG | 0.679795 | 7_2:+85391600 | None:intergenic |
| GAGGTTGATGAAGAAGACGA+CGG | 0.681666 | 7_2:+85391629 | None:intergenic |
| ACTTGCAAAAGATGGAGACA+GGG | 0.688727 | 7_2:+85389607 | None:intergenic |
| AATTCTAGAGTGATATACCA+AGG | 0.688891 | 7_2:+85388615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAATGAAAATATGTAT+TGG | + | chr7_2:85388443-85388462 | None:intergenic | 10.0% |
| !!! | ATATTTTAATTGAGAAAATT+GGG | - | chr7_2:85389522-85389541 | Msa1085000:intron | 10.0% |
| !!! | TTTTTTTACTTAAGCTTTAA+AGG | - | chr7_2:85388538-85388557 | Msa1085000:three_prime_UTR | 15.0% |
| !!! | TATCTCAATATATTTTGATT+TGG | - | chr7_2:85389220-85389239 | Msa1085000:intron | 15.0% |
| !!! | CATATTTTAATTGAGAAAAT+TGG | - | chr7_2:85389521-85389540 | Msa1085000:intron | 15.0% |
| !!! | AAATATTTTGAATTCGATTT+GGG | + | chr7_2:85389681-85389700 | None:intergenic | 15.0% |
| !!! | AAAATATTTTGAATTCGATT+TGG | + | chr7_2:85389682-85389701 | None:intergenic | 15.0% |
| !!! | TTTTAATTTTCTGTTTACTT+TGG | - | chr7_2:85390027-85390046 | Msa1085000:intron | 15.0% |
| !! | CAAAAAAAGAATACATTATT+TGG | + | chr7_2:85390989-85391008 | None:intergenic | 15.0% |
| !!! | TATTTTACTTATTGAAAAAC+TGG | - | chr7_2:85391289-85391308 | Msa1085000:intron | 15.0% |
| !!! | ATTTTACTTATTGAAAAACT+GGG | - | chr7_2:85391290-85391309 | Msa1085000:intron | 15.0% |
| !!! | AAACTACATAAATTTAAAGT+AGG | - | chr7_2:85391325-85391344 | Msa1085000:intron | 15.0% |
| !! | TGATAATCTTAATTTAAATG+TGG | + | chr7_2:85391481-85391500 | None:intergenic | 15.0% |
| !! | AGTATCTCAAAAACAAAAAT+AGG | + | chr7_2:85388633-85388652 | None:intergenic | 20.0% |
| !! | TCAACTAAAATACAAACTAT+CGG | + | chr7_2:85388700-85388719 | None:intergenic | 20.0% |
| !! | AAATTGTTAAAGTGTAAAGT+GGG | + | chr7_2:85388902-85388921 | None:intergenic | 20.0% |
| !!! | AATATTTTGAATTCGATTTG+GGG | + | chr7_2:85389680-85389699 | None:intergenic | 20.0% |
| !! | AATATACACCATATATGAAT+CGG | + | chr7_2:85389931-85389950 | None:intergenic | 20.0% |
| !! | TTCATATATGGTGTATATTT+AGG | - | chr7_2:85389932-85389951 | Msa1085000:intron | 20.0% |
| !!! | ACTTATTGTTAAGGAAATTT+TGG | - | chr7_2:85390098-85390117 | Msa1085000:intron | 20.0% |
| !! | TTAGATGTAATCATCATTAA+AGG | - | chr7_2:85390285-85390304 | Msa1085000:intron | 20.0% |
| !! | TAGATGTAATCATCATTAAA+GGG | - | chr7_2:85390286-85390305 | Msa1085000:intron | 20.0% |
| !! | TCTAAACGAAAATATCATAA+GGG | + | chr7_2:85391058-85391077 | None:intergenic | 20.0% |
| !! | ATTTATCTTATCTTATGTGA+TGG | - | chr7_2:85391555-85391574 | Msa1085000:intron | 20.0% |
| !!! | ATCAATTTATTTCAAGTAGT+TGG | - | chr7_2:85392258-85392277 | Msa1085000:intron | 20.0% |
| ! | AACTAAAATACAAACTATCG+GGG | + | chr7_2:85388698-85388717 | None:intergenic | 25.0% |
| ! | CAACTAAAATACAAACTATC+GGG | + | chr7_2:85388699-85388718 | None:intergenic | 25.0% |
| ! | AAGATGACTAAAAGTGAATT+GGG | + | chr7_2:85388734-85388753 | None:intergenic | 25.0% |
| ! | AAAGATGACTAAAAGTGAAT+TGG | + | chr7_2:85388735-85388754 | None:intergenic | 25.0% |
| !!! | AGATCTTTTTGGCAAAATTA+GGG | + | chr7_2:85388832-85388851 | None:intergenic | 25.0% |
| !!! | AAGATCTTTTTGGCAAAATT+AGG | + | chr7_2:85388833-85388852 | None:intergenic | 25.0% |
| ! | CAAATTGTTAAAGTGTAAAG+TGG | + | chr7_2:85388903-85388922 | None:intergenic | 25.0% |
| ! | CACTTTACACTTTAACAATT+TGG | - | chr7_2:85388901-85388920 | Msa1085000:intron | 25.0% |
| !!! | GTTAATAAGATGGTTTTAGT+TGG | + | chr7_2:85388985-85389004 | None:intergenic | 25.0% |
| ! | TTAATTGAGAAAATTGGGTT+TGG | - | chr7_2:85389527-85389546 | Msa1085000:intron | 25.0% |
| !!! | TTTTAATTTTTGTGCTGAAG+TGG | - | chr7_2:85389572-85389591 | Msa1085000:CDS | 25.0% |
| ! | AATAAACAAAAGGAAGAAAG+AGG | + | chr7_2:85390007-85390026 | None:intergenic | 25.0% |
| ! | GGATGATATACTTATTGTTA+AGG | - | chr7_2:85390089-85390108 | Msa1085000:intron | 25.0% |
| ! | AATTAGATATCAGTTGCTAA+AGG | - | chr7_2:85390186-85390205 | Msa1085000:intron | 25.0% |
| ! | ATTCCTAGATATGAGAAAAT+GGG | + | chr7_2:85390225-85390244 | None:intergenic | 25.0% |
| ! | TATTCCTAGATATGAGAAAA+TGG | + | chr7_2:85390226-85390245 | None:intergenic | 25.0% |
| ! | TTCCACAGATTTCAAATAAT+AGG | + | chr7_2:85390260-85390279 | None:intergenic | 25.0% |
| ! | TTCATGTTTGTTCTTTAGTT+TGG | - | chr7_2:85390452-85390471 | Msa1085000:intron | 25.0% |
| !! | AGATTGATACAAGAGTATAA+TGG | + | chr7_2:85390609-85390628 | None:intergenic | 25.0% |
| ! | TTGAGATTCATATAACCTAA+GGG | + | chr7_2:85390696-85390715 | None:intergenic | 25.0% |
| ! | ATTGAGATTCATATAACCTA+AGG | + | chr7_2:85390697-85390716 | None:intergenic | 25.0% |
| ! | TGATAGTTTACATACTGAAT+GGG | - | chr7_2:85390720-85390739 | Msa1085000:intron | 25.0% |
| !! | TATGCATAATATTTTGTCAC+AGG | - | chr7_2:85390744-85390763 | Msa1085000:intron | 25.0% |
| !! | ATGCATAATATTTTGTCACA+GGG | - | chr7_2:85390745-85390764 | Msa1085000:intron | 25.0% |
| !!! | AATTCCTGCTAAATTTTGAT+GGG | - | chr7_2:85390794-85390813 | Msa1085000:intron | 25.0% |
| ! | TTACACATAGAATATACAGA+GGG | + | chr7_2:85390927-85390946 | None:intergenic | 25.0% |
| ! | ATTACACATAGAATATACAG+AGG | + | chr7_2:85390928-85390947 | None:intergenic | 25.0% |
| ! | GTCTAAACGAAAATATCATA+AGG | + | chr7_2:85391059-85391078 | None:intergenic | 25.0% |
| ! | ATCGAATCTAATCTATCAAA+AGG | + | chr7_2:85391228-85391247 | None:intergenic | 25.0% |
| ! | ATACTTAACAGTAAGACAAA+CGG | + | chr7_2:85391272-85391291 | None:intergenic | 25.0% |
| !! | CTACATAAATTTAAAGTAGG+CGG | - | chr7_2:85391328-85391347 | Msa1085000:intron | 25.0% |
| ! | AAAGAAATTCTTGTAGATGA+AGG | + | chr7_2:85391763-85391782 | None:intergenic | 25.0% |
| !! | TATGATTTTTCTCTGAACTT+TGG | - | chr7_2:85391867-85391886 | Msa1085000:intron | 25.0% |
| ! | TCTTTGACTAGTAAATTGAA+AGG | + | chr7_2:85391922-85391941 | None:intergenic | 25.0% |
| ! | TCTTTATTACTGTTTGTTCT+TGG | - | chr7_2:85391956-85391975 | Msa1085000:intron | 25.0% |
| ! | AACAAGTTGTTTAATAGCAT+TGG | - | chr7_2:85392232-85392251 | Msa1085000:intron | 25.0% |
| !! | TCAAGGTGCAATTTTGAAAA+TGG | - | chr7_2:85388768-85388787 | Msa1085000:intron | 30.0% |
| AAATATTACTCTGTTCTGTC+TGG | + | chr7_2:85388801-85388820 | None:intergenic | 30.0% | |
| !! | GATCTTTTTGGCAAAATTAG+GGG | + | chr7_2:85388831-85388850 | None:intergenic | 30.0% |
| ! | ATCTTTTCTTCACCTATCTT+GGG | + | chr7_2:85388877-85388896 | None:intergenic | 30.0% |
| ! | AATCTTTTCTTCACCTATCT+TGG | + | chr7_2:85388878-85388897 | None:intergenic | 30.0% |
| CTCAAAAAGAAAACGAATAG+TGG | + | chr7_2:85388940-85388959 | None:intergenic | 30.0% | |
| ! | TCTCTCGATGCATTTTTATT+TGG | - | chr7_2:85389261-85389280 | Msa1085000:intron | 30.0% |
| AAAAGCAAAGTTGAAGAACA+AGG | + | chr7_2:85389326-85389345 | None:intergenic | 30.0% | |
| CTTAGAGAATTAGAGATTGT+TGG | - | chr7_2:85389349-85389368 | Msa1085000:intron | 30.0% | |
| CAGTATTTGAGTAACATAAC+CGG | + | chr7_2:85389836-85389855 | None:intergenic | 30.0% | |
| !!! | ACATTTTTTCTGTCTCATTC+TGG | - | chr7_2:85389969-85389988 | Msa1085000:intron | 30.0% |
| TGTATGACGTAAATTGATGT+TGG | - | chr7_2:85390053-85390072 | Msa1085000:intron | 30.0% | |
| !! | GATGTTGGTAATTTACACAA+CGG | - | chr7_2:85390068-85390087 | Msa1085000:intron | 30.0% |
| ATGAGAAAATGGGAGAAAAA+AGG | + | chr7_2:85390215-85390234 | None:intergenic | 30.0% | |
| ! | GTCCTATTATTTGAAATCTG+TGG | - | chr7_2:85390255-85390274 | Msa1085000:intron | 30.0% |
| !!! | ATAGACTTTTAGCTCATCTT+GGG | - | chr7_2:85390397-85390416 | Msa1085000:intron | 30.0% |
| !! | ATGTTTGTTCTTTAGTTTGG+TGG | - | chr7_2:85390455-85390474 | Msa1085000:intron | 30.0% |
| ! | TAAACTAGGCTTTGTAAACA+TGG | + | chr7_2:85390525-85390544 | None:intergenic | 30.0% |
| CTGATAGTTTACATACTGAA+TGG | - | chr7_2:85390719-85390738 | Msa1085000:intron | 30.0% | |
| GATAGTTTACATACTGAATG+GGG | - | chr7_2:85390721-85390740 | Msa1085000:intron | 30.0% | |
| ! | TTTGTCACAGGGATTTTAAA+TGG | - | chr7_2:85390756-85390775 | Msa1085000:intron | 30.0% |
| ! | TTGTCACAGGGATTTTAAAT+GGG | - | chr7_2:85390757-85390776 | Msa1085000:intron | 30.0% |
| CAAAATTTAGCAGGAATTGA+GGG | + | chr7_2:85390792-85390811 | None:intergenic | 30.0% | |
| TCAAAATTTAGCAGGAATTG+AGG | + | chr7_2:85390793-85390812 | None:intergenic | 30.0% | |
| ! | CAATTCCTGCTAAATTTTGA+TGG | - | chr7_2:85390793-85390812 | Msa1085000:intron | 30.0% |
| !! | ATTCCTGCTAAATTTTGATG+GGG | - | chr7_2:85390795-85390814 | Msa1085000:intron | 30.0% |
| TACACATAGAATATACAGAG+GGG | + | chr7_2:85390926-85390945 | None:intergenic | 30.0% | |
| ATGAAATCACTTGCAAAAGA+TGG | + | chr7_2:85391133-85391152 | None:intergenic | 30.0% | |
| ! | CTTTTGCAAGTGATTTCATA+CGG | - | chr7_2:85391134-85391153 | Msa1085000:intron | 30.0% |
| !! | GTGGTTATCATCTTTAGTTT+TGG | + | chr7_2:85391462-85391481 | None:intergenic | 30.0% |
| GTCATCATTATCTTATGTGA+TGG | - | chr7_2:85391511-85391530 | Msa1085000:intron | 30.0% | |
| ! | ATTTCTTTTCCTATGCAACT+AGG | - | chr7_2:85391775-85391794 | Msa1085000:intron | 30.0% |
| TGTAAATCAATTGTTGTACC+AGG | - | chr7_2:85391798-85391817 | Msa1085000:intron | 30.0% | |
| GTAAATCAATTGTTGTACCA+GGG | - | chr7_2:85391799-85391818 | Msa1085000:intron | 30.0% | |
| ! | GCACATTTTCTATAACTTCT+TGG | + | chr7_2:85392081-85392100 | None:intergenic | 30.0% |
| !! | AATTCTAGAGTGATATACCA+AGG | + | chr7_2:85392117-85392136 | None:intergenic | 30.0% |
| ! | TTATTTCAAGTAGTTGGACT+AGG | - | chr7_2:85392264-85392283 | Msa1085000:intron | 30.0% |
| TCAAAATTGCACCTTGAATG+CGG | + | chr7_2:85388765-85388784 | None:intergenic | 35.0% | |
| ! | CGCTTGTTTCAAGATCTTTT+TGG | + | chr7_2:85388843-85388862 | None:intergenic | 35.0% |
| AAACGAATAGTGGTTCATTC+TGG | + | chr7_2:85388930-85388949 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGGGTTAATAAGA+TGG | + | chr7_2:85388995-85389014 | None:intergenic | 35.0% |
| GAACTGTAGAAAAACAGTAC+CGG | + | chr7_2:85389178-85389197 | None:intergenic | 35.0% | |
| TCGAGAGAAGAAACGAAAAA+GGG | + | chr7_2:85389249-85389268 | None:intergenic | 35.0% | |
| ATCGAGAGAAGAAACGAAAA+AGG | + | chr7_2:85389250-85389269 | None:intergenic | 35.0% | |
| AGAGAATTAGAGATTGTTGG+TGG | - | chr7_2:85389352-85389371 | Msa1085000:intron | 35.0% | |
| AACATTTAGCAAACAAGCAC+CGG | + | chr7_2:85389465-85389484 | None:intergenic | 35.0% | |
| AAGCTATCATGTAGAACTTG+TGG | - | chr7_2:85389714-85389733 | Msa1085000:intron | 35.0% | |
| !! | AGAAGCATTTGAATTTCGCA+GGG | + | chr7_2:85389808-85389827 | None:intergenic | 35.0% |
| !! | AAGAAGCATTTGAATTTCGC+AGG | + | chr7_2:85389809-85389828 | None:intergenic | 35.0% |
| ATTCAAATGCTTCTTCTCTC+CGG | - | chr7_2:85389814-85389833 | Msa1085000:intron | 35.0% | |
| ATTGTATGCTAGACACTTAG+GGG | + | chr7_2:85389884-85389903 | None:intergenic | 35.0% | |
| GATTGTATGCTAGACACTTA+GGG | + | chr7_2:85389885-85389904 | None:intergenic | 35.0% | |
| AGATTGTATGCTAGACACTT+AGG | + | chr7_2:85389886-85389905 | None:intergenic | 35.0% | |
| CGGTGAAGTCTAAGAAATAA+AGG | + | chr7_2:85389911-85389930 | None:intergenic | 35.0% | |
| !! | AGACTTCACCGATTCATATA+TGG | - | chr7_2:85389920-85389939 | Msa1085000:intron | 35.0% |
| !! | GTTAAGGAAATTTTGGTCTC+TGG | - | chr7_2:85390105-85390124 | Msa1085000:intron | 35.0% |
| TAGATATCAGTTGCTAAAGG+TGG | - | chr7_2:85390189-85390208 | Msa1085000:intron | 35.0% | |
| ! | TCTCCCATTTTCTCATATCT+AGG | - | chr7_2:85390219-85390238 | Msa1085000:intron | 35.0% |
| !!! | TGGGGCATATTCGTTTTTTT+GGG | + | chr7_2:85390316-85390335 | None:intergenic | 35.0% |
| !!! | ATGGGGCATATTCGTTTTTT+TGG | + | chr7_2:85390317-85390336 | None:intergenic | 35.0% |
| ! | TGATGATAATTTGTGGCGAA+AGG | + | chr7_2:85390346-85390365 | None:intergenic | 35.0% |
| !! | GCTGGTTTGATGATAATTTG+TGG | + | chr7_2:85390353-85390372 | None:intergenic | 35.0% |
| TCTATCCATGGTAAATGAGT+GGG | + | chr7_2:85390382-85390401 | None:intergenic | 35.0% | |
| ATGAGCTAAAAGTCTATCCA+TGG | + | chr7_2:85390394-85390413 | None:intergenic | 35.0% | |
| !!! | GATAGACTTTTAGCTCATCT+TGG | - | chr7_2:85390396-85390415 | Msa1085000:intron | 35.0% |
| !! | AGGCTTTGTAAACATGGTTT+TGG | + | chr7_2:85390519-85390538 | None:intergenic | 35.0% |
| ACAAAGCCTAGTTTACAACT+TGG | - | chr7_2:85390530-85390549 | Msa1085000:intron | 35.0% | |
| CAAAGCCTAGTTTACAACTT+GGG | - | chr7_2:85390531-85390550 | Msa1085000:intron | 35.0% | |
| TAGATCCCAAGTTGTAAACT+AGG | + | chr7_2:85390539-85390558 | None:intergenic | 35.0% | |
| GGGAAAGTGAAAGAGAAATA+GGG | + | chr7_2:85390676-85390695 | None:intergenic | 35.0% | |
| AGGGAAAGTGAAAGAGAAAT+AGG | + | chr7_2:85390677-85390696 | None:intergenic | 35.0% | |
| TTTCTCTTTCACTTTCCCTT+AGG | - | chr7_2:85390678-85390697 | Msa1085000:intron | 35.0% | |
| TCAACAGTTGCTAAAGTAAG+AGG | - | chr7_2:85391691-85391710 | Msa1085000:intron | 35.0% | |
| CAACAGTTGCTAAAGTAAGA+GGG | - | chr7_2:85391692-85391711 | Msa1085000:intron | 35.0% | |
| TGATTTACACCTAGTTGCAT+AGG | + | chr7_2:85391787-85391806 | None:intergenic | 35.0% | |
| ! | TTTTGTTGATACAGAGAGCT+TGG | - | chr7_2:85392023-85392042 | Msa1085000:intron | 35.0% |
| GTGCAACATACATTTAACCT+TGG | - | chr7_2:85392097-85392116 | Msa1085000:intron | 35.0% | |
| AAGGTTAAATGTATGCAGCT+CGG | + | chr7_2:85392155-85392174 | None:intergenic | 35.0% | |
| AGCTGCATACATTTAACCTT+TGG | - | chr7_2:85392155-85392174 | Msa1085000:intron | 35.0% | |
| !! | ACTCTAGAGTGATATACCAA+AGG | + | chr7_2:85392174-85392193 | None:intergenic | 35.0% |
| TAATTTCATAGCACGTAGCT+GGG | + | chr7_2:85392213-85392232 | None:intergenic | 35.0% | |
| TTAATTTCATAGCACGTAGC+TGG | + | chr7_2:85392214-85392233 | None:intergenic | 35.0% | |
| ! | TGGACTAGGTGTAAATCTAT+TGG | - | chr7_2:85392278-85392297 | Msa1085000:intron | 35.0% |
| GGACTAGGTGTAAATCTATT+GGG | - | chr7_2:85392279-85392298 | Msa1085000:intron | 35.0% | |
| GATCTTCCTAAACCCAAGAT+AGG | - | chr7_2:85388862-85388881 | Msa1085000:intron | 40.0% | |
| TCTTCACCTATCTTGGGTTT+AGG | + | chr7_2:85388871-85388890 | None:intergenic | 40.0% | |
| TGAGACGTTAACCTTTAACC+TGG | - | chr7_2:85388956-85388975 | Msa1085000:intron | 40.0% | |
| ! | TTAGTTGGTGTCCAGGTTAA+AGG | + | chr7_2:85388970-85388989 | None:intergenic | 40.0% |
| TCGATTGAGAAGAAAACGAC+GGG | + | chr7_2:85389131-85389150 | None:intergenic | 40.0% | |
| CTCGATTGAGAAGAAAACGA+CGG | + | chr7_2:85389132-85389151 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGAATAGCTCCCTC+CGG | - | chr7_2:85389443-85389462 | Msa1085000:intron | 40.0% |
| !! | TGCCACATTTGAGCTGATTT+TGG | - | chr7_2:85389599-85389618 | Msa1085000:CDS | 40.0% |
| CACCAAAATCAGCTCAAATG+TGG | + | chr7_2:85389604-85389623 | None:intergenic | 40.0% | |
| CTGGATTGTAACATGAGGAA+AGG | - | chr7_2:85390124-85390143 | Msa1085000:intron | 40.0% | |
| !! | GAGGAAAGGAGAAGCATTAT+AGG | - | chr7_2:85390138-85390157 | Msa1085000:intron | 40.0% |
| !!! | GGCATATTCGTTTTTTTGGG+TGG | + | chr7_2:85390313-85390332 | None:intergenic | 40.0% |
| ! | GATAATTTGTGGCGAAAGGT+TGG | + | chr7_2:85390342-85390361 | None:intergenic | 40.0% |
| GTCTATCCATGGTAAATGAG+TGG | + | chr7_2:85390383-85390402 | None:intergenic | 40.0% | |
| ATGCCCCATCAAAATTTAGC+AGG | + | chr7_2:85390801-85390820 | None:intergenic | 40.0% | |
| !! | CTAAATTTTGATGGGGCATC+TGG | - | chr7_2:85390802-85390821 | Msa1085000:intron | 40.0% |
| CTTCATGAAGCAAGAGTAAG+TGG | + | chr7_2:85390893-85390912 | None:intergenic | 40.0% | |
| TTGCTTCATGAAGCCTTCTT+TGG | - | chr7_2:85390900-85390919 | Msa1085000:intron | 40.0% | |
| TCATAAGGGTGAGCACAAAA+AGG | + | chr7_2:85391044-85391063 | None:intergenic | 40.0% | |
| ACTTGCAAAAGATGGAGACA+GGG | + | chr7_2:85391125-85391144 | None:intergenic | 40.0% | |
| ! | AGCTAGAGCATTAGACAATG+AGG | + | chr7_2:85391636-85391655 | None:intergenic | 40.0% |
| GTTGCTAAAGTAAGAGGGTT+TGG | - | chr7_2:85391697-85391716 | Msa1085000:intron | 40.0% | |
| TAGTCAAAGAAGACAGCGTT+TGG | - | chr7_2:85391932-85391951 | Msa1085000:intron | 40.0% | |
| ATACAAACTATCGGGGTGTG+CGG | + | chr7_2:85388691-85388710 | None:intergenic | 45.0% | |
| CTTTCACTCATCCGCATTCA+AGG | - | chr7_2:85388751-85388770 | Msa1085000:intron | 45.0% | |
| ACTCTGTTCTGTCTGGTATG+TGG | + | chr7_2:85388794-85388813 | None:intergenic | 45.0% | |
| !!! | GATGGTTTTAGTTGGTGTCC+AGG | + | chr7_2:85388977-85388996 | None:intergenic | 45.0% |
| !!! | ACGGTTTTTGAGGTCTTGGA+GGG | + | chr7_2:85389084-85389103 | None:intergenic | 45.0% |
| ! | GAAGAAGACGACGGTTTTTG+AGG | + | chr7_2:85389094-85389113 | None:intergenic | 45.0% |
| !! | GAGGTTGATGAAGAAGACGA+CGG | + | chr7_2:85389103-85389122 | None:intergenic | 45.0% |
| AAGAAAACGACGGGATTGAG+AGG | + | chr7_2:85389122-85389141 | None:intergenic | 45.0% | |
| TGTCACGTCTTCTGATTCTC+CGG | - | chr7_2:85389156-85389175 | Msa1085000:intron | 45.0% | |
| ACTGAAGACAGTAGCCATCA+GGG | + | chr7_2:85389384-85389403 | None:intergenic | 45.0% | |
| AACTGAAGACAGTAGCCATC+AGG | + | chr7_2:85389385-85389404 | None:intergenic | 45.0% | |
| !! | TTTAGCAAACAAGCACCGGA+GGG | + | chr7_2:85389461-85389480 | None:intergenic | 45.0% |
| !! | ATTTAGCAAACAAGCACCGG+AGG | + | chr7_2:85389462-85389481 | None:intergenic | 45.0% |
| !! | TCGATTTGGGGCTTGTGTTA+TGG | + | chr7_2:85389668-85389687 | None:intergenic | 45.0% |
| GGTCTCTGGATTGTAACATG+AGG | - | chr7_2:85390119-85390138 | Msa1085000:intron | 45.0% | |
| TCCATGGTAAATGAGTGGGT+GGG | + | chr7_2:85390378-85390397 | None:intergenic | 45.0% | |
| ATCCATGGTAAATGAGTGGG+TGG | + | chr7_2:85390379-85390398 | None:intergenic | 45.0% | |
| !! | AATTTTGATGGGGCATCTGG+TGG | - | chr7_2:85390805-85390824 | Msa1085000:intron | 45.0% |
| !! | ATTTTGATGGGGCATCTGGT+GGG | - | chr7_2:85390806-85390825 | Msa1085000:intron | 45.0% |
| ATATACAGAGGGGCCAAAGA+AGG | + | chr7_2:85390916-85390935 | None:intergenic | 45.0% | |
| CACTTGCAAAAGATGGAGAC+AGG | + | chr7_2:85391126-85391145 | None:intergenic | 45.0% | |
| ! | CCTTCATTAGCTCTTCAAGC+AGG | + | chr7_2:85391180-85391199 | None:intergenic | 45.0% |
| CCTGCTTGAAGAGCTAATGA+AGG | - | chr7_2:85391177-85391196 | Msa1085000:intron | 45.0% | |
| GAAGAGCTAATGAAGGTGAC+TGG | - | chr7_2:85391184-85391203 | Msa1085000:intron | 45.0% | |
| ATATAAACCCACACTCCCAC+AGG | + | chr7_2:85391377-85391396 | None:intergenic | 45.0% | |
| ATTCGCATTGCTTCAAACCC+TGG | + | chr7_2:85391819-85391838 | None:intergenic | 45.0% | |
| CCAAAATAAGCACGACCAAG+AGG | + | chr7_2:85392055-85392074 | None:intergenic | 45.0% | |
| ! | CCTCTTGGTCGTGCTTATTT+TGG | - | chr7_2:85392052-85392071 | Msa1085000:intron | 45.0% |
| !!! | CTTGGTCGTGCTTATTTTGG+TGG | - | chr7_2:85392055-85392074 | Msa1085000:intron | 45.0% |
| !! | AAAATTAAAAAATAAACAAA+AGG | + | chr7_2:85390017-85390036 | None:intergenic | 5.0% |
| TACAAACTATCGGGGTGTGC+GGG | + | chr7_2:85388690-85388709 | None:intergenic | 50.0% | |
| !!! | AGCGGGTTCAGTGGTTTTGA+GGG | + | chr7_2:85389007-85389026 | None:intergenic | 50.0% |
| ! | GTGATGAGTGGGTTTCACGA+CGG | + | chr7_2:85389043-85389062 | None:intergenic | 50.0% |
| !! | GCAACTCTGAGGTGATGAGT+GGG | + | chr7_2:85389054-85389073 | None:intergenic | 50.0% |
| !! | AGCAACTCTGAGGTGATGAG+TGG | + | chr7_2:85389055-85389074 | None:intergenic | 50.0% |
| !!! | GACGGTTTTTGAGGTCTTGG+AGG | + | chr7_2:85389085-85389104 | None:intergenic | 50.0% |
| !!! | GACGACGGTTTTTGAGGTCT+TGG | + | chr7_2:85389088-85389107 | None:intergenic | 50.0% |
| !! | GTTGGTGGTATCATCCCTGA+TGG | - | chr7_2:85389367-85389386 | Msa1085000:intron | 50.0% |
| TGTGGCGAAAGGTTGGAGAT+GGG | + | chr7_2:85390335-85390354 | None:intergenic | 50.0% | |
| TTGTGGCGAAAGGTTGGAGA+TGG | + | chr7_2:85390336-85390355 | None:intergenic | 50.0% | |
| CCATGGTAAATGAGTGGGTG+GGG | + | chr7_2:85390377-85390396 | None:intergenic | 50.0% | |
| ! | ATTAGCTCTTCAAGCAGGCG+AGG | + | chr7_2:85391175-85391194 | None:intergenic | 50.0% |
| TTGTGGCAAGCTCTTCCTGT+GGG | - | chr7_2:85391359-85391378 | Msa1085000:intron | 50.0% | |
| !! | AGAGCTTGGTGTAGTCCTCT+TGG | - | chr7_2:85392037-85392056 | Msa1085000:intron | 50.0% |
| !! | GAGCGGGTTCAGTGGTTTTG+AGG | + | chr7_2:85389008-85389027 | None:intergenic | 55.0% |
| ! | ATGAGTGGGTTTCACGACGG+CGG | + | chr7_2:85389040-85389059 | None:intergenic | 55.0% |
| AGGGTTTCGCAGCAACTCTG+AGG | + | chr7_2:85389065-85389084 | None:intergenic | 55.0% | |
| GTGGCGAAAGGTTGGAGATG+GGG | + | chr7_2:85390334-85390353 | None:intergenic | 55.0% | |
| TAAATGAGTGGGTGGGGAGC+TGG | + | chr7_2:85390371-85390390 | None:intergenic | 55.0% | |
| CCCCACCCACTCATTTACCA+TGG | - | chr7_2:85390374-85390393 | Msa1085000:intron | 55.0% | |
| AGTAGGCGGAACTGCACTTG+TGG | - | chr7_2:85391342-85391361 | Msa1085000:intron | 55.0% | |
| CTTGTGGCAAGCTCTTCCTG+TGG | - | chr7_2:85391358-85391377 | Msa1085000:intron | 55.0% | |
| AAGCTCTTCCTGTGGGAGTG+TGG | - | chr7_2:85391366-85391385 | Msa1085000:intron | 55.0% | |
| ! | AGCTCTTCCTGTGGGAGTGT+GGG | - | chr7_2:85391367-85391386 | Msa1085000:intron | 55.0% |
| ATGCAGCTCGGAACACGTTC+AGG | + | chr7_2:85392143-85392162 | None:intergenic | 55.0% | |
| ACTATCGGGGTGTGCGGGTA+TGG | + | chr7_2:85388685-85388704 | None:intergenic | 60.0% | |
| TCGGGGTGTGCGGGTATGGT+GGG | + | chr7_2:85388681-85388700 | None:intergenic | 65.0% | |
| ATCGGGGTGTGCGGGTATGG+TGG | + | chr7_2:85388682-85388701 | None:intergenic | 65.0% | |
| ! | GGGTGGATGAGCGGGTTCAG+TGG | + | chr7_2:85389016-85389035 | None:intergenic | 65.0% |
| GTGGGTTTCACGACGGCGGT+GGG | + | chr7_2:85389036-85389055 | None:intergenic | 65.0% | |
| ! | AGTGGGTTTCACGACGGCGG+TGG | + | chr7_2:85389037-85389056 | None:intergenic | 65.0% |
| GGGGTGTGCGGGTATGGTGG+GGG | + | chr7_2:85388679-85388698 | None:intergenic | 70.0% | |
| CGGGGTGTGCGGGTATGGTG+GGG | + | chr7_2:85388680-85388699 | None:intergenic | 70.0% | |
| ACGGCGGTGGGTGGATGAGC+GGG | + | chr7_2:85389024-85389043 | None:intergenic | 70.0% | |
| GACGGCGGTGGGTGGATGAG+CGG | + | chr7_2:85389025-85389044 | None:intergenic | 70.0% | |
| GGTTTCACGACGGCGGTGGG+TGG | + | chr7_2:85389033-85389052 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 85388404 | 85392347 | 85388404 | ID=Msa1085000;Name=Msa1085000 |
| chr7_2 | mRNA | 85388404 | 85392347 | 85388404 | ID=Msa1085000-mRNA-1;Parent=Msa1085000;Name=Msa1085000-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.25|0.2|0.6|0|0.2|5|215|110 |
| chr7_2 | exon | 85388404 | 85388714 | 85388404 | ID=Msa1085000-mRNA-1:exon:23120;Parent=Msa1085000-mRNA-1 |
| chr7_2 | exon | 85389553 | 85389666 | 85389553 | ID=Msa1085000-mRNA-1:exon:23119;Parent=Msa1085000-mRNA-1 |
| chr7_2 | exon | 85391574 | 85391683 | 85391574 | ID=Msa1085000-mRNA-1:exon:23118;Parent=Msa1085000-mRNA-1 |
| chr7_2 | exon | 85392192 | 85392199 | 85392192 | ID=Msa1085000-mRNA-1:exon:23117;Parent=Msa1085000-mRNA-1 |
| chr7_2 | exon | 85392343 | 85392347 | 85392343 | ID=Msa1085000-mRNA-1:exon:23116;Parent=Msa1085000-mRNA-1 |
| chr7_2 | CDS | 85392343 | 85392347 | 85392343 | ID=Msa1085000-mRNA-1:cds;Parent=Msa1085000-mRNA-1 |
| chr7_2 | CDS | 85392192 | 85392199 | 85392192 | ID=Msa1085000-mRNA-1:cds;Parent=Msa1085000-mRNA-1 |
| chr7_2 | CDS | 85391574 | 85391683 | 85391574 | ID=Msa1085000-mRNA-1:cds;Parent=Msa1085000-mRNA-1 |
| chr7_2 | CDS | 85389553 | 85389666 | 85389553 | ID=Msa1085000-mRNA-1:cds;Parent=Msa1085000-mRNA-1 |
| chr7_2 | CDS | 85388619 | 85388714 | 85388619 | ID=Msa1085000-mRNA-1:cds;Parent=Msa1085000-mRNA-1 |
| chr7_2 | three_prime_UTR | 85388404 | 85388618 | 85388404 | ID=Msa1085000-mRNA-1:three_prime_utr;Parent=Msa1085000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
