Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054610 | XP_024633305.1 | 96.552 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054610 | sp|Q9SYY4|ELO3L_ARATH | 60.215 | 279 | 108 | 3 | 1 | 276 | 1 | 279 | 2.35e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054610 | A0A396JM73 | 86.897 | 290 | 9 | 1 | 1 | 290 | 1 | 261 | 3.06e-178 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054610 | Msa0101380 | 0.919090 | 6.943530e-87 | -8.615850e-47 |
| Msa0054610 | Msa0143590 | 0.803534 | 3.329543e-49 | -8.615850e-47 |
| Msa0054610 | Msa0145640 | 0.998888 | 1.489171e-280 | -8.615850e-47 |
| Msa0054610 | Msa0345980 | 0.817444 | 3.287458e-52 | -8.615850e-47 |
| Msa0054610 | Msa0393100 | 0.817386 | 3.386957e-52 | -8.615850e-47 |
| Msa0054610 | Msa0488580 | 0.815527 | 8.830773e-52 | -8.615850e-47 |
| Msa0054610 | Msa0556270 | 0.802900 | 4.503610e-49 | -8.615850e-47 |
| Msa0054610 | Msa0704560 | 0.805108 | 1.565146e-49 | -8.615850e-47 |
| Msa0054610 | Msa0733560 | 0.805490 | 1.301733e-49 | -8.615850e-47 |
| Msa0054610 | Msa0881510 | 0.824803 | 6.620200e-54 | -8.615850e-47 |
| Msa0054610 | Msa1013190 | 0.807217 | 5.629275e-50 | -8.615850e-47 |
| Msa0054610 | Msa1157110 | 0.801120 | 1.046198e-48 | -8.615850e-47 |
| Msa0054610 | Msa1263110 | 0.809686 | 1.673958e-50 | -8.615850e-47 |
| Msa0054610 | Msa1303550 | 0.813105 | 3.029007e-51 | -8.615850e-47 |
| Msa0054610 | Msa1419320 | 0.913357 | 6.756325e-84 | -8.615850e-47 |
| Msa0054610 | Msa1427000 | 0.811391 | 7.167236e-51 | -8.615850e-47 |
| Msa0054610 | Msa1439780 | 0.806165 | 9.389683e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054610 | MtrunA17_Chr1g0154571 | 86.897 | 290 | 9 | 1 | 1 | 290 | 1 | 261 | 0.0 | 501 |
| Msa0054610 | MtrunA17_Chr3g0141331 | 68.085 | 282 | 88 | 1 | 7 | 288 | 13 | 292 | 1.52e-137 | 390 |
| Msa0054610 | MtrunA17_Chr5g0403531 | 57.801 | 282 | 117 | 2 | 3 | 283 | 5 | 285 | 8.21e-111 | 322 |
| Msa0054610 | MtrunA17_Chr8g0373641 | 58.824 | 272 | 108 | 3 | 8 | 276 | 15 | 285 | 7.92e-106 | 310 |
| Msa0054610 | MtrunA17_Chr7g0273031 | 31.786 | 280 | 169 | 6 | 9 | 280 | 9 | 274 | 4.42e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054610 | AT4G36830.1 | 60.215 | 279 | 108 | 3 | 1 | 276 | 1 | 279 | 2.39e-117 | 339 |
| Msa0054610 | AT1G75000.1 | 61.511 | 278 | 100 | 3 | 8 | 278 | 3 | 280 | 3.11e-112 | 325 |
| Msa0054610 | AT4G36830.2 | 61.628 | 258 | 96 | 3 | 1 | 255 | 1 | 258 | 1.50e-110 | 322 |
| Msa0054610 | AT3G06470.1 | 28.723 | 282 | 181 | 5 | 7 | 278 | 6 | 277 | 1.91e-34 | 126 |
| Msa0054610 | AT3G06460.1 | 30.108 | 279 | 175 | 5 | 7 | 280 | 6 | 269 | 4.55e-34 | 125 |
Find 65 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTGGTTTGTCATTT+TGG | 0.099853 | 1_2:-9309107 | Msa0054610:CDS |
| TTGGTTTATTGTTTGGTTTA+TGG | 0.193155 | 1_2:-9309209 | Msa0054610:CDS |
| TGGTTTATGGCTATAGATTT+TGG | 0.209259 | 1_2:-9309196 | Msa0054610:CDS |
| CTCGACTTTGGTTTATTGTT+TGG | 0.257456 | 1_2:-9309216 | Msa0054610:CDS |
| AGGTGCTATTGTTCTTCTTT+TGG | 0.268883 | 1_2:+9308964 | None:intergenic |
| ACGCAGCCAGGCTGTCCGTC+TGG | 0.310829 | 1_2:-9309600 | Msa0054610:CDS |
| TAGACCATCCATCCATAGTT+TGG | 0.325917 | 1_2:-9309736 | Msa0054610:CDS |
| TGTCCGTCTGGGGCCTATTC+CGG | 0.361610 | 1_2:-9309588 | Msa0054610:CDS |
| CGCAGCCAGGCTGTCCGTCT+GGG | 0.382356 | 1_2:-9309599 | Msa0054610:CDS |
| GGTGTAATGGAATTGGAGCT+TGG | 0.382997 | 1_2:-9309055 | Msa0054610:CDS |
| ACTCCATCGGAACCAAACTA+TGG | 0.389345 | 1_2:+9309724 | None:intergenic |
| AGAGGTGGGTGTAATGGAAT+TGG | 0.394775 | 1_2:-9309062 | Msa0054610:CDS |
| GGCTGCGTTTGAAGATCTTA+AGG | 0.395067 | 1_2:+9309615 | None:intergenic |
| ATCATGAGGTAGTGGATTGC+CGG | 0.403218 | 1_2:+9309569 | None:intergenic |
| TGACACAGAGCCTAAAATAT+TGG | 0.420282 | 1_2:-9309763 | Msa0054610:CDS |
| GTGTAATGGAATTGGAGCTT+GGG | 0.420847 | 1_2:-9309054 | Msa0054610:CDS |
| TAGGCCCCAGACGGACAGCC+TGG | 0.424087 | 1_2:+9309594 | None:intergenic |
| CCACTTGGTATGCGTCCATC+TGG | 0.425938 | 1_2:-9309425 | Msa0054610:CDS |
| TTGATCAGATGTACTACTAT+AGG | 0.432647 | 1_2:+9308944 | None:intergenic |
| AGGTAGTGGATTGCCGGAAT+AGG | 0.440809 | 1_2:+9309575 | None:intergenic |
| AAACAAAGGAACCATTCAAA+AGG | 0.452719 | 1_2:+9309449 | None:intergenic |
| GCCATGTGGCGCCCCATGAT+TGG | 0.461847 | 1_2:+9309696 | None:intergenic |
| GATGGAGTCCGAGCCAATCA+TGG | 0.472942 | 1_2:-9309709 | Msa0054610:CDS |
| AAAATGAGAGTTTCCGTTGA+CGG | 0.478008 | 1_2:+9309327 | None:intergenic |
| AAAAGAACTGATCAAGAGAA+TGG | 0.488684 | 1_2:+9309286 | None:intergenic |
| TGGTTCCTTTGTTTCCCACT+TGG | 0.489824 | 1_2:-9309440 | Msa0054610:CDS |
| AACAAAGGAACCATTCAAAA+GGG | 0.499822 | 1_2:+9309450 | None:intergenic |
| ATGGAGTCCGAGCCAATCAT+GGG | 0.507645 | 1_2:-9309708 | Msa0054610:CDS |
| CATCCATAGTTTGGTTCCGA+TGG | 0.512158 | 1_2:-9309727 | Msa0054610:CDS |
| TAAGATCTTCAAACGCAGCC+AGG | 0.516653 | 1_2:-9309612 | Msa0054610:CDS |
| GGAGTAGCCACCGTGTGTCA+TGG | 0.523135 | 1_2:+9309489 | None:intergenic |
| GTGGCGCCCCATGATTGGCT+CGG | 0.534503 | 1_2:+9309701 | None:intergenic |
| TTGGCAATGAACATTGACAT+AGG | 0.540007 | 1_2:+9308983 | None:intergenic |
| TCTTTGTCATTCTCCGTCAA+CGG | 0.544484 | 1_2:-9309340 | Msa0054610:CDS |
| ATGACACACGGTGGCTACTC+CGG | 0.545021 | 1_2:-9309487 | Msa0054610:CDS |
| CATCGGAACCAAACTATGGA+TGG | 0.554197 | 1_2:+9309728 | None:intergenic |
| TTAGTGACATCATGAGGTAG+TGG | 0.557036 | 1_2:+9309561 | None:intergenic |
| GCGATGGCTATGACGAGGAA+TGG | 0.557115 | 1_2:+9309674 | None:intergenic |
| GCCAATCATGGGGCGCCACA+TGG | 0.558381 | 1_2:-9309697 | Msa0054610:CDS |
| ATGATTGGCTCGGACTCCAT+CGG | 0.572372 | 1_2:+9309711 | None:intergenic |
| GCAGCCAGGCTGTCCGTCTG+GGG | 0.572875 | 1_2:-9309598 | Msa0054610:CDS |
| AGCTGTTATATAAGCGGCGA+TGG | 0.577723 | 1_2:+9309658 | None:intergenic |
| CAGAAGAAAACACGACCAGA+TGG | 0.581311 | 1_2:+9309410 | None:intergenic |
| GTCATGGAGTTCTGCAGCCG+CGG | 0.588480 | 1_2:+9309505 | None:intergenic |
| TGAAGATCTTAAGGATGATG+TGG | 0.603265 | 1_2:+9309624 | None:intergenic |
| GCATACCAAGTGGGAAACAA+AGG | 0.605927 | 1_2:+9309435 | None:intergenic |
| TTGCCGGAATAGGCCCCAGA+CGG | 0.613062 | 1_2:+9309585 | None:intergenic |
| TTGACGGAGAATGACAAAGA+AGG | 0.617040 | 1_2:+9309343 | None:intergenic |
| GGAACCAAACTATGGATGGA+TGG | 0.619142 | 1_2:+9309732 | None:intergenic |
| AGATCTTAAGGATGATGTGG+AGG | 0.621098 | 1_2:+9309627 | None:intergenic |
| AGCCGCGGAGAATAGCATGC+CGG | 0.623890 | 1_2:+9309520 | None:intergenic |
| GAGTGCAGCTGTTATATAAG+CGG | 0.625737 | 1_2:+9309652 | None:intergenic |
| CTGCAGAACTCCATGACACA+CGG | 0.630059 | 1_2:-9309499 | Msa0054610:CDS |
| CATGCCGGAGAAAATTGTGA+TGG | 0.634231 | 1_2:+9309535 | None:intergenic |
| CCAGATGGACGCATACCAAG+TGG | 0.648526 | 1_2:+9309425 | None:intergenic |
| ACAAAGGAACCATTCAAAAG+GGG | 0.655501 | 1_2:+9309451 | None:intergenic |
| ACAAATGAAGAAACCTTGAG+AGG | 0.668969 | 1_2:+9309372 | None:intergenic |
| TGGAGATTAGTGACATCATG+AGG | 0.675612 | 1_2:+9309555 | None:intergenic |
| TGGAGTCCGAGCCAATCATG+GGG | 0.680027 | 1_2:-9309707 | Msa0054610:CDS |
| CAGATGGACGCATACCAAGT+GGG | 0.681279 | 1_2:+9309426 | None:intergenic |
| CTCCGGCATGCTATTCTCCG+CGG | 0.683685 | 1_2:-9309522 | Msa0054610:CDS |
| AAGCGGCGATGGCTATGACG+AGG | 0.706832 | 1_2:+9309669 | None:intergenic |
| GATCTTAAGGATGATGTGGA+GGG | 0.711812 | 1_2:+9309628 | None:intergenic |
| TATGACGAGGAATGGCCATG+TGG | 0.744207 | 1_2:+9309682 | None:intergenic |
| CAGAACTCCATGACACACGG+TGG | 0.774706 | 1_2:-9309496 | Msa0054610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTTTGGATTGAAAT+TGG | - | chr1_2:9309517-9309536 | Msa0054610:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | - | chr1_2:9309518-9309537 | Msa0054610:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | + | chr1_2:9309547-9309566 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | - | chr1_2:9309571-9309590 | Msa0054610:CDS | 20.0% |
| !!! | TATAGATTTTGGATTGAAAT+TGG | - | chr1_2:9309517-9309536 | Msa0054610:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | - | chr1_2:9309518-9309537 | Msa0054610:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | + | chr1_2:9309547-9309566 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | - | chr1_2:9309571-9309590 | Msa0054610:CDS | 20.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | + | chr1_2:9308952-9308971 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | - | chr1_2:9309493-9309512 | Msa0054610:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | - | chr1_2:9309570-9309589 | Msa0054610:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | - | chr1_2:9309595-9309614 | Msa0054610:CDS | 25.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | + | chr1_2:9308952-9308971 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | - | chr1_2:9309493-9309512 | Msa0054610:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | - | chr1_2:9309570-9309589 | Msa0054610:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | - | chr1_2:9309595-9309614 | Msa0054610:CDS | 25.0% |
| AACAAAGGAACCATTCAAAA+GGG | + | chr1_2:9309255-9309274 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | + | chr1_2:9309256-9309275 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | - | chr1_2:9309317-9309336 | Msa0054610:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | + | chr1_2:9309419-9309438 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | - | chr1_2:9309422-9309441 | Msa0054610:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | - | chr1_2:9309447-9309466 | Msa0054610:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | - | chr1_2:9309506-9309525 | Msa0054610:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | - | chr1_2:9309582-9309601 | Msa0054610:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | + | chr1_2:9309761-9309780 | None:intergenic | 30.0% | |
| AACAAAGGAACCATTCAAAA+GGG | + | chr1_2:9309255-9309274 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | + | chr1_2:9309256-9309275 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | - | chr1_2:9309317-9309336 | Msa0054610:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | + | chr1_2:9309419-9309438 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | - | chr1_2:9309422-9309441 | Msa0054610:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | - | chr1_2:9309447-9309466 | Msa0054610:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | - | chr1_2:9309506-9309525 | Msa0054610:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | - | chr1_2:9309582-9309601 | Msa0054610:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | + | chr1_2:9309761-9309780 | None:intergenic | 30.0% | |
| TGACACAGAGCCTAAAATAT+TGG | - | chr1_2:9308939-9308958 | Msa0054610:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | + | chr1_2:9309081-9309100 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | - | chr1_2:9309163-9309182 | Msa0054610:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | - | chr1_2:9309242-9309261 | Msa0054610:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | + | chr1_2:9309254-9309273 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | + | chr1_2:9309333-9309352 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | + | chr1_2:9309378-9309397 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | - | chr1_2:9309380-9309399 | Msa0054610:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | - | chr1_2:9309486-9309505 | Msa0054610:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | - | chr1_2:9309605-9309624 | Msa0054610:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | + | chr1_2:9309708-9309727 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | + | chr1_2:9309722-9309741 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | + | chr1_2:9309741-9309760 | None:intergenic | 35.0% |
| TGACACAGAGCCTAAAATAT+TGG | - | chr1_2:9308939-9308958 | Msa0054610:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | + | chr1_2:9309081-9309100 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | - | chr1_2:9309163-9309182 | Msa0054610:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | - | chr1_2:9309242-9309261 | Msa0054610:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | + | chr1_2:9309254-9309273 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | + | chr1_2:9309333-9309352 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | + | chr1_2:9309378-9309397 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | - | chr1_2:9309380-9309399 | Msa0054610:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | - | chr1_2:9309486-9309505 | Msa0054610:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | - | chr1_2:9309605-9309624 | Msa0054610:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | + | chr1_2:9309708-9309727 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | + | chr1_2:9309722-9309741 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | + | chr1_2:9309741-9309760 | None:intergenic | 35.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | + | chr1_2:9308937-9308956 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | - | chr1_2:9308966-9308985 | Msa0054610:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | + | chr1_2:9309053-9309072 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | + | chr1_2:9309077-9309096 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | + | chr1_2:9309078-9309097 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | + | chr1_2:9309144-9309163 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | + | chr1_2:9309150-9309169 | None:intergenic | 40.0% | |
| !!! | AAGGGGTAGTTTTAGTTCTC+CGG | + | chr1_2:9309237-9309256 | None:intergenic | 40.0% |
| TTGACGGAGAATGACAAAGA+AGG | + | chr1_2:9309362-9309381 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | - | chr1_2:9309362-9309381 | Msa0054610:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | - | chr1_2:9309454-9309473 | Msa0054610:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | - | chr1_2:9309455-9309474 | Msa0054610:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | - | chr1_2:9309617-9309636 | Msa0054610:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | - | chr1_2:9309622-9309641 | Msa0054610:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | - | chr1_2:9309648-9309667 | Msa0054610:CDS | 40.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | + | chr1_2:9308937-9308956 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | - | chr1_2:9308966-9308985 | Msa0054610:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | + | chr1_2:9309053-9309072 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | + | chr1_2:9309077-9309096 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | + | chr1_2:9309078-9309097 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | + | chr1_2:9309144-9309163 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | + | chr1_2:9309150-9309169 | None:intergenic | 40.0% | |
| !!! | AAGGGGTAGTTTTAGTTCTC+CGG | + | chr1_2:9309237-9309256 | None:intergenic | 40.0% |
| TTGACGGAGAATGACAAAGA+AGG | + | chr1_2:9309362-9309381 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | - | chr1_2:9309362-9309381 | Msa0054610:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | - | chr1_2:9309454-9309473 | Msa0054610:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | - | chr1_2:9309455-9309474 | Msa0054610:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | - | chr1_2:9309617-9309636 | Msa0054610:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | - | chr1_2:9309622-9309641 | Msa0054610:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | - | chr1_2:9309648-9309667 | Msa0054610:CDS | 40.0% |
| GGAACCAAACTATGGATGGA+TGG | + | chr1_2:9308973-9308992 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | + | chr1_2:9308977-9308996 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | - | chr1_2:9308975-9308994 | Msa0054610:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | + | chr1_2:9308981-9309000 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | + | chr1_2:9309047-9309066 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | + | chr1_2:9309090-9309109 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | - | chr1_2:9309090-9309109 | Msa0054610:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | + | chr1_2:9309136-9309155 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | + | chr1_2:9309170-9309189 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | - | chr1_2:9309262-9309281 | Msa0054610:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | + | chr1_2:9309270-9309289 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | + | chr1_2:9309295-9309314 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | - | chr1_2:9309293-9309312 | Msa0054610:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | - | chr1_2:9309474-9309493 | Msa0054610:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | - | chr1_2:9309625-9309644 | Msa0054610:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | - | chr1_2:9309626-9309645 | Msa0054610:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | - | chr1_2:9309634-9309653 | Msa0054610:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | - | chr1_2:9309640-9309659 | Msa0054610:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | - | chr1_2:9309647-9309666 | Msa0054610:CDS | 45.0% |
| GGAACCAAACTATGGATGGA+TGG | + | chr1_2:9308973-9308992 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | + | chr1_2:9308977-9308996 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | - | chr1_2:9308975-9308994 | Msa0054610:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | + | chr1_2:9308981-9309000 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | + | chr1_2:9309047-9309066 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | + | chr1_2:9309090-9309109 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | - | chr1_2:9309090-9309109 | Msa0054610:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | + | chr1_2:9309136-9309155 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | + | chr1_2:9309170-9309189 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | - | chr1_2:9309262-9309281 | Msa0054610:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | + | chr1_2:9309270-9309289 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | + | chr1_2:9309295-9309314 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | - | chr1_2:9309293-9309312 | Msa0054610:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | - | chr1_2:9309474-9309493 | Msa0054610:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | - | chr1_2:9309625-9309644 | Msa0054610:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | - | chr1_2:9309626-9309645 | Msa0054610:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | - | chr1_2:9309634-9309653 | Msa0054610:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | - | chr1_2:9309640-9309659 | Msa0054610:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | - | chr1_2:9309647-9309666 | Msa0054610:CDS | 45.0% |
| !! | ATGATTGGCTCGGACTCCAT+CGG | + | chr1_2:9308994-9309013 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | - | chr1_2:9308994-9309013 | Msa0054610:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | + | chr1_2:9309023-9309042 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | + | chr1_2:9309130-9309149 | None:intergenic | 50.0% |
| CTGCAGAACTCCATGACACA+CGG | - | chr1_2:9309203-9309222 | Msa0054610:CDS | 50.0% | |
| CAGATGGACGCATACCAAGT+GGG | + | chr1_2:9309279-9309298 | None:intergenic | 50.0% | |
| !! | ATGATTGGCTCGGACTCCAT+CGG | + | chr1_2:9308994-9309013 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | - | chr1_2:9308994-9309013 | Msa0054610:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | + | chr1_2:9309023-9309042 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | + | chr1_2:9309130-9309149 | None:intergenic | 50.0% |
| CTGCAGAACTCCATGACACA+CGG | - | chr1_2:9309203-9309222 | Msa0054610:CDS | 50.0% | |
| CAGATGGACGCATACCAAGT+GGG | + | chr1_2:9309279-9309298 | None:intergenic | 50.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | - | chr1_2:9308993-9309012 | Msa0054610:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | - | chr1_2:9308995-9309014 | Msa0054610:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | + | chr1_2:9309031-9309050 | None:intergenic | 55.0% | |
| CAGAACTCCATGACACACGG+TGG | - | chr1_2:9309206-9309225 | Msa0054610:CDS | 55.0% | |
| ATGACACACGGTGGCTACTC+CGG | - | chr1_2:9309215-9309234 | Msa0054610:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | + | chr1_2:9309280-9309299 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | - | chr1_2:9309277-9309296 | Msa0054610:CDS | 55.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | - | chr1_2:9308993-9309012 | Msa0054610:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | - | chr1_2:9308995-9309014 | Msa0054610:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | + | chr1_2:9309031-9309050 | None:intergenic | 55.0% | |
| CAGAACTCCATGACACACGG+TGG | - | chr1_2:9309206-9309225 | Msa0054610:CDS | 55.0% | |
| ATGACACACGGTGGCTACTC+CGG | - | chr1_2:9309215-9309234 | Msa0054610:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | + | chr1_2:9309280-9309299 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | - | chr1_2:9309277-9309296 | Msa0054610:CDS | 55.0% | |
| AAGCGGCGATGGCTATGACG+AGG | + | chr1_2:9309036-9309055 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | - | chr1_2:9309114-9309133 | Msa0054610:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | + | chr1_2:9309120-9309139 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | - | chr1_2:9309180-9309199 | Msa0054610:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | + | chr1_2:9309185-9309204 | None:intergenic | 60.0% | |
| GTCATGGAGTTCTGCAGCCG+CGG | + | chr1_2:9309200-9309219 | None:intergenic | 60.0% | |
| GGAGTAGCCACCGTGTGTCA+TGG | + | chr1_2:9309216-9309235 | None:intergenic | 60.0% | |
| AAGCGGCGATGGCTATGACG+AGG | + | chr1_2:9309036-9309055 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | - | chr1_2:9309114-9309133 | Msa0054610:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | + | chr1_2:9309120-9309139 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | - | chr1_2:9309180-9309199 | Msa0054610:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | + | chr1_2:9309185-9309204 | None:intergenic | 60.0% | |
| GTCATGGAGTTCTGCAGCCG+CGG | + | chr1_2:9309200-9309219 | None:intergenic | 60.0% | |
| GGAGTAGCCACCGTGTGTCA+TGG | + | chr1_2:9309216-9309235 | None:intergenic | 60.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | + | chr1_2:9309004-9309023 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | - | chr1_2:9309005-9309024 | Msa0054610:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | + | chr1_2:9309009-9309028 | None:intergenic | 65.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | + | chr1_2:9309004-9309023 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | - | chr1_2:9309005-9309024 | Msa0054610:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | + | chr1_2:9309009-9309028 | None:intergenic | 65.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | - | chr1_2:9309102-9309121 | Msa0054610:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | - | chr1_2:9309103-9309122 | Msa0054610:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | - | chr1_2:9309104-9309123 | Msa0054610:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | + | chr1_2:9309111-9309130 | None:intergenic | 70.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | - | chr1_2:9309102-9309121 | Msa0054610:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | - | chr1_2:9309103-9309122 | Msa0054610:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | - | chr1_2:9309104-9309123 | Msa0054610:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | + | chr1_2:9309111-9309130 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9308926 | 9309798 | 9308926 | ID=Msa0054610;Name=Msa0054610 |
| chr1_2 | mRNA | 9308926 | 9309798 | 9308926 | ID=Msa0054610-mRNA-1;Parent=Msa0054610;Name=Msa0054610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|290 |
| chr1_2 | exon | 9308926 | 9309798 | 9308926 | ID=Msa0054610-mRNA-1:exon:3437;Parent=Msa0054610-mRNA-1 |
| chr1_2 | CDS | 9308926 | 9309798 | 9308926 | ID=Msa0054610-mRNA-1:cds;Parent=Msa0054610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
