Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101380 | XP_024633305.1 | 96.207 | 290 | 11 | 0 | 1 | 290 | 1 | 290 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101380 | sp|Q9SYY4|ELO3L_ARATH | 59.857 | 279 | 109 | 3 | 1 | 276 | 1 | 279 | 4.20e-115 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101380 | A0A1S2Y4C8 | 84.286 | 280 | 44 | 0 | 1 | 280 | 4 | 283 | 2.43e-169 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011040 | Msa0101380 | 0.803809 | 2.920347e-49 | -8.615850e-47 |
| Msa0013270 | Msa0101380 | 0.821876 | 3.197626e-53 | -8.615850e-47 |
| Msa0025570 | Msa0101380 | 0.806100 | 9.690938e-50 | -8.615850e-47 |
| Msa0030800 | Msa0101380 | 0.806426 | 8.273686e-50 | -8.615850e-47 |
| Msa0045810 | Msa0101380 | 0.804476 | 2.121284e-49 | -8.615850e-47 |
| Msa0054610 | Msa0101380 | 0.919090 | 6.943530e-87 | -8.615850e-47 |
| Msa0062190 | Msa0101380 | 0.811276 | 7.590890e-51 | -8.615850e-47 |
| Msa0073110 | Msa0101380 | 0.804924 | 1.710566e-49 | -8.615850e-47 |
| Msa0101380 | Msa0106540 | 0.819070 | 1.408362e-52 | -8.615850e-47 |
| Msa0101380 | Msa0120450 | 0.802245 | 6.146474e-49 | -8.615850e-47 |
| Msa0101380 | Msa0143590 | 0.804879 | 1.747726e-49 | -8.615850e-47 |
| Msa0101380 | Msa0145640 | 0.919350 | 5.022626e-87 | -8.615850e-47 |
| Msa0101380 | Msa0265480 | 0.801900 | 7.239268e-49 | -8.615850e-47 |
| Msa0101380 | Msa0318490 | 0.803998 | 2.667570e-49 | -8.615850e-47 |
| Msa0101380 | Msa0345890 | 0.803128 | 4.041261e-49 | -8.615850e-47 |
| Msa0101380 | Msa0345980 | 0.822645 | 2.120876e-53 | -8.615850e-47 |
| Msa0101380 | Msa0390160 | 0.813585 | 2.375653e-51 | -8.615850e-47 |
| Msa0101380 | Msa0390170 | 0.805696 | 1.178323e-49 | -8.615850e-47 |
| Msa0101380 | Msa0393100 | 0.810090 | 1.369995e-50 | -8.615850e-47 |
| Msa0101380 | Msa0405200 | 0.804150 | 2.480649e-49 | -8.615850e-47 |
| Msa0101380 | Msa0427560 | 0.807604 | 4.661047e-50 | -8.615850e-47 |
| Msa0101380 | Msa0441600 | 0.800820 | 1.204593e-48 | -8.615850e-47 |
| Msa0101380 | Msa0456450 | -0.800747 | 1.246858e-48 | -8.615850e-47 |
| Msa0101380 | Msa0457070 | -0.806431 | 8.254395e-50 | -8.615850e-47 |
| Msa0101380 | Msa0460600 | 0.803476 | 3.423664e-49 | -8.615850e-47 |
| Msa0101380 | Msa0478080 | 0.801472 | 8.859357e-49 | -8.615850e-47 |
| Msa0101380 | Msa0488580 | 0.832055 | 1.175696e-55 | -8.615850e-47 |
| Msa0101380 | Msa0567330 | 0.800330 | 1.516347e-48 | -8.615850e-47 |
| Msa0101380 | Msa0604220 | 0.802458 | 5.558391e-49 | -8.615850e-47 |
| Msa0101380 | Msa0618680 | 0.803412 | 3.528809e-49 | -8.615850e-47 |
| Msa0101380 | Msa0682110 | 0.800741 | 1.250348e-48 | -8.615850e-47 |
| Msa0101380 | Msa0682160 | 0.804088 | 2.555350e-49 | -8.615850e-47 |
| Msa0101380 | Msa0704560 | 0.803602 | 3.223140e-49 | -8.615850e-47 |
| Msa0101380 | Msa0707330 | 0.818146 | 2.282626e-52 | -8.615850e-47 |
| Msa0101380 | Msa0731580 | 0.818611 | 1.791269e-52 | -8.615850e-47 |
| Msa0101380 | Msa0733560 | 0.827982 | 1.157748e-54 | -8.615850e-47 |
| Msa0101380 | Msa0789780 | 0.813545 | 2.424835e-51 | -8.615850e-47 |
| Msa0101380 | Msa0829990 | 0.811993 | 5.302073e-51 | -8.615850e-47 |
| Msa0101380 | Msa0839530 | 0.806164 | 9.393550e-50 | -8.615850e-47 |
| Msa0101380 | Msa0881510 | 0.804248 | 2.366153e-49 | -8.615850e-47 |
| Msa0101380 | Msa0921790 | 0.817104 | 3.919752e-52 | -8.615850e-47 |
| Msa0101380 | Msa0960580 | 0.808528 | 2.963652e-50 | -8.615850e-47 |
| Msa0101380 | Msa1001120 | 0.801391 | 9.204889e-49 | -8.615850e-47 |
| Msa0101380 | Msa1013190 | 0.806020 | 1.007293e-49 | -8.615850e-47 |
| Msa0101380 | Msa1027910 | 0.810376 | 1.188956e-50 | -8.615850e-47 |
| Msa0101380 | Msa1029860 | 0.801479 | 8.830700e-49 | -8.615850e-47 |
| Msa0101380 | Msa1030210 | 0.814160 | 1.774634e-51 | -8.615850e-47 |
| Msa0101380 | Msa1041250 | 0.812499 | 4.111445e-51 | -8.615850e-47 |
| Msa0101380 | Msa1068710 | 0.804395 | 2.205607e-49 | -8.615850e-47 |
| Msa0101380 | Msa1068780 | 0.804369 | 2.232357e-49 | -8.615850e-47 |
| Msa0101380 | Msa1069250 | 0.814016 | 1.909001e-51 | -8.615850e-47 |
| Msa0101380 | Msa1075090 | 0.812926 | 3.315529e-51 | -8.615850e-47 |
| Msa0101380 | Msa1095590 | 0.808079 | 3.694347e-50 | -8.615850e-47 |
| Msa0101380 | Msa1108560 | 0.808680 | 2.749056e-50 | -8.615850e-47 |
| Msa0101380 | Msa1115980 | 0.806597 | 7.612859e-50 | -8.615850e-47 |
| Msa0101380 | Msa1120580 | 0.808112 | 3.634910e-50 | -8.615850e-47 |
| Msa0101380 | Msa1137750 | 0.804473 | 2.124618e-49 | -8.615850e-47 |
| Msa0101380 | Msa1142390 | 0.812460 | 4.192798e-51 | -8.615850e-47 |
| Msa0101380 | Msa1156730 | 0.820828 | 5.580433e-53 | -8.615850e-47 |
| Msa0101380 | Msa1156740 | 0.808416 | 3.131313e-50 | -8.615850e-47 |
| Msa0101380 | Msa1157110 | 0.802882 | 4.544121e-49 | -8.615850e-47 |
| Msa0101380 | Msa1162430 | 0.805299 | 1.427366e-49 | -8.615850e-47 |
| Msa0101380 | Msa1174280 | 0.802149 | 6.434609e-49 | -8.615850e-47 |
| Msa0101380 | Msa1191530 | -0.800744 | 1.248524e-48 | -8.615850e-47 |
| Msa0101380 | Msa1205770 | 0.805075 | 1.590346e-49 | -8.615850e-47 |
| Msa0101380 | Msa1223960 | 0.812033 | 5.196922e-51 | -8.615850e-47 |
| Msa0101380 | Msa1223990 | 0.819959 | 8.831375e-53 | -8.615850e-47 |
| Msa0101380 | Msa1263110 | 0.830857 | 2.318890e-55 | -8.615850e-47 |
| Msa0101380 | Msa1342360 | -0.800573 | 1.352551e-48 | -8.615850e-47 |
| Msa0101380 | Msa1366480 | 0.810186 | 1.306137e-50 | -8.615850e-47 |
| Msa0101380 | Msa1405830 | 0.818114 | 2.320585e-52 | -8.615850e-47 |
| Msa0101380 | Msa1419320 | 0.923787 | 1.675483e-89 | -8.615850e-47 |
| Msa0101380 | Msa1427000 | 0.804755 | 1.855252e-49 | -8.615850e-47 |
| Msa0101380 | Msa1437780 | 0.800523 | 1.384854e-48 | -8.615850e-47 |
| Msa0101380 | Msa1439780 | 0.802116 | 6.536135e-49 | -8.615850e-47 |
| Msa0101380 | Msa1453050 | 0.804178 | 2.447280e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101380 | MtrunA17_Chr1g0154571 | 86.552 | 290 | 10 | 1 | 1 | 290 | 1 | 261 | 1.83e-172 | 477 |
| Msa0101380 | MtrunA17_Chr3g0141331 | 68.085 | 282 | 88 | 1 | 7 | 288 | 13 | 292 | 1.48e-136 | 387 |
| Msa0101380 | MtrunA17_Chr5g0403531 | 57.447 | 282 | 118 | 2 | 3 | 283 | 5 | 285 | 1.31e-110 | 322 |
| Msa0101380 | MtrunA17_Chr8g0373641 | 58.456 | 272 | 109 | 3 | 8 | 276 | 15 | 285 | 2.05e-105 | 309 |
| Msa0101380 | MtrunA17_Chr7g0273031 | 31.786 | 280 | 169 | 6 | 9 | 280 | 9 | 274 | 6.95e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0101380 | AT4G36830.1 | 59.857 | 279 | 109 | 3 | 1 | 276 | 1 | 279 | 4.27e-116 | 336 |
| Msa0101380 | AT1G75000.1 | 61.151 | 278 | 101 | 3 | 8 | 278 | 3 | 280 | 6.85e-111 | 322 |
| Msa0101380 | AT4G36830.2 | 61.240 | 258 | 97 | 3 | 1 | 255 | 1 | 258 | 4.00e-109 | 319 |
| Msa0101380 | AT3G06460.1 | 30.466 | 279 | 174 | 6 | 7 | 280 | 6 | 269 | 2.11e-34 | 127 |
| Msa0101380 | AT3G06470.1 | 28.772 | 285 | 177 | 6 | 7 | 278 | 6 | 277 | 2.70e-34 | 126 |
Find 65 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTGGTTTGTCATTT+TGG | 0.099853 | 1_3:+7985576 | Msa0101380:CDS |
| TTGGTTTATTGTTTGGTTTA+TGG | 0.193155 | 1_3:+7985474 | Msa0101380:CDS |
| TGGTTTATGGCTATAGATTT+TGG | 0.209259 | 1_3:+7985487 | Msa0101380:CDS |
| CTCGACTTTGGTTTATTGTT+TGG | 0.257456 | 1_3:+7985467 | Msa0101380:CDS |
| AGGTGCTATTGTTCTTCTTT+TGG | 0.268883 | 1_3:-7985719 | None:intergenic |
| ACGCAGCCAGGCTGTCCGTC+TGG | 0.310829 | 1_3:+7985083 | Msa0101380:CDS |
| TAGACCATCCATCCATAGTT+TGG | 0.325917 | 1_3:+7984947 | Msa0101380:CDS |
| TGTCCGTCTGGGGCCTATTC+CGG | 0.361610 | 1_3:+7985095 | Msa0101380:CDS |
| ACGACACACGGTGGCTGCTC+TGG | 0.377266 | 1_3:+7985196 | Msa0101380:CDS |
| CGCAGCCAGGCTGTCCGTCT+GGG | 0.382356 | 1_3:+7985084 | Msa0101380:CDS |
| GGTGTAATGGAATTGGAGCT+TGG | 0.382997 | 1_3:+7985628 | Msa0101380:CDS |
| ACTCCATCGGAACCAAACTA+TGG | 0.389345 | 1_3:-7984959 | None:intergenic |
| AGAGGTGGGTGTAATGGAAT+TGG | 0.394775 | 1_3:+7985621 | Msa0101380:CDS |
| GGCTGCGTTTGAAGATCTTA+AGG | 0.395067 | 1_3:-7985068 | None:intergenic |
| ATCATGAGGTAGTGGATTGC+CGG | 0.403218 | 1_3:-7985114 | None:intergenic |
| TGACACAGAGCCTAAAATAT+TGG | 0.420282 | 1_3:+7984920 | Msa0101380:CDS |
| GTGTAATGGAATTGGAGCTT+GGG | 0.420847 | 1_3:+7985629 | Msa0101380:CDS |
| TAGGCCCCAGACGGACAGCC+TGG | 0.424087 | 1_3:-7985089 | None:intergenic |
| CCACTTGGTATGCGTCCATC+TGG | 0.425938 | 1_3:+7985258 | Msa0101380:CDS |
| TTGATCAGATGTACTACTAT+AGG | 0.432647 | 1_3:-7985739 | None:intergenic |
| AGGTAGTGGATTGCCGGAAT+AGG | 0.440809 | 1_3:-7985108 | None:intergenic |
| AAACAAAGGAACCATTCAAA+AGG | 0.452719 | 1_3:-7985234 | None:intergenic |
| GCCATGTGGCGCCCCATGAT+TGG | 0.461847 | 1_3:-7984987 | None:intergenic |
| GATGGAGTCCGAGCCAATCA+TGG | 0.472942 | 1_3:+7984974 | Msa0101380:CDS |
| AAAATGAGAGTTTCCGTTGA+CGG | 0.478008 | 1_3:-7985356 | None:intergenic |
| AAAAGAACTGATCAAGAGAA+TGG | 0.488684 | 1_3:-7985397 | None:intergenic |
| TGGTTCCTTTGTTTCCCACT+TGG | 0.489824 | 1_3:+7985243 | Msa0101380:CDS |
| AACAAAGGAACCATTCAAAA+GGG | 0.499822 | 1_3:-7985233 | None:intergenic |
| ATGGAGTCCGAGCCAATCAT+GGG | 0.507645 | 1_3:+7984975 | Msa0101380:CDS |
| CATCCATAGTTTGGTTCCGA+TGG | 0.512158 | 1_3:+7984956 | Msa0101380:CDS |
| TAAGATCTTCAAACGCAGCC+AGG | 0.516653 | 1_3:+7985071 | Msa0101380:CDS |
| AGAGCAGCCACCGTGTGTCG+TGG | 0.518569 | 1_3:-7985194 | None:intergenic |
| GTGGCGCCCCATGATTGGCT+CGG | 0.534503 | 1_3:-7984982 | None:intergenic |
| TTGGCAATGAACATTGACAT+AGG | 0.540007 | 1_3:-7985700 | None:intergenic |
| TCTTTGTCATTCTCCGTCAA+CGG | 0.544484 | 1_3:+7985343 | Msa0101380:CDS |
| CATCGGAACCAAACTATGGA+TGG | 0.554197 | 1_3:-7984955 | None:intergenic |
| TTAGTGACATCATGAGGTAG+TGG | 0.557036 | 1_3:-7985122 | None:intergenic |
| GCGATGGCTATGACGAGGAA+TGG | 0.557115 | 1_3:-7985009 | None:intergenic |
| GCCAATCATGGGGCGCCACA+TGG | 0.558381 | 1_3:+7984986 | Msa0101380:CDS |
| ATGATTGGCTCGGACTCCAT+CGG | 0.572372 | 1_3:-7984972 | None:intergenic |
| GCAGCCAGGCTGTCCGTCTG+GGG | 0.572875 | 1_3:+7985085 | Msa0101380:CDS |
| AGCTGTTATATAAGCGGCGA+TGG | 0.577723 | 1_3:-7985025 | None:intergenic |
| CAGAAGAAAACACGACCAGA+TGG | 0.581311 | 1_3:-7985273 | None:intergenic |
| CTGCAGAACTCCACGACACA+CGG | 0.598573 | 1_3:+7985184 | Msa0101380:CDS |
| GTCGTGGAGTTCTGCAGCCG+CGG | 0.601574 | 1_3:-7985178 | None:intergenic |
| TGAAGATCTTAAGGATGATG+TGG | 0.603265 | 1_3:-7985059 | None:intergenic |
| GCATACCAAGTGGGAAACAA+AGG | 0.605927 | 1_3:-7985248 | None:intergenic |
| TTGCCGGAATAGGCCCCAGA+CGG | 0.613062 | 1_3:-7985098 | None:intergenic |
| TTGACGGAGAATGACAAAGA+AGG | 0.617040 | 1_3:-7985340 | None:intergenic |
| GGAACCAAACTATGGATGGA+TGG | 0.619142 | 1_3:-7984951 | None:intergenic |
| AGATCTTAAGGATGATGTGG+AGG | 0.621098 | 1_3:-7985056 | None:intergenic |
| AGCCGCGGAGAATAGCATGC+CGG | 0.623890 | 1_3:-7985163 | None:intergenic |
| GAGTGCAGCTGTTATATAAG+CGG | 0.625737 | 1_3:-7985031 | None:intergenic |
| CATGCCGGAGAAAATTGTGA+TGG | 0.634231 | 1_3:-7985148 | None:intergenic |
| CCAGATGGACGCATACCAAG+TGG | 0.648526 | 1_3:-7985258 | None:intergenic |
| ACAAAGGAACCATTCAAAAG+GGG | 0.655501 | 1_3:-7985232 | None:intergenic |
| ACAAATGAAGAAACCTTGAG+AGG | 0.668969 | 1_3:-7985311 | None:intergenic |
| TGGAGATTAGTGACATCATG+AGG | 0.675612 | 1_3:-7985128 | None:intergenic |
| TGGAGTCCGAGCCAATCATG+GGG | 0.680027 | 1_3:+7984976 | Msa0101380:CDS |
| CAGATGGACGCATACCAAGT+GGG | 0.681279 | 1_3:-7985257 | None:intergenic |
| CTCCGGCATGCTATTCTCCG+CGG | 0.683685 | 1_3:+7985161 | Msa0101380:CDS |
| AAGCGGCGATGGCTATGACG+AGG | 0.706832 | 1_3:-7985014 | None:intergenic |
| GATCTTAAGGATGATGTGGA+GGG | 0.711812 | 1_3:-7985055 | None:intergenic |
| CAGAACTCCACGACACACGG+TGG | 0.733766 | 1_3:+7985187 | Msa0101380:CDS |
| TATGACGAGGAATGGCCATG+TGG | 0.744207 | 1_3:-7985001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTTTGGATTGAAAT+TGG | + | chr1_3:7985498-7985517 | Msa0101380:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | + | chr1_3:7985499-7985518 | Msa0101380:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | - | chr1_3:7985528-7985547 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | + | chr1_3:7985552-7985571 | Msa0101380:CDS | 20.0% |
| !!! | TATAGATTTTGGATTGAAAT+TGG | + | chr1_3:7985498-7985517 | Msa0101380:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | + | chr1_3:7985499-7985518 | Msa0101380:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | - | chr1_3:7985528-7985547 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | + | chr1_3:7985552-7985571 | Msa0101380:CDS | 20.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | - | chr1_3:7984933-7984952 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | + | chr1_3:7985474-7985493 | Msa0101380:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | + | chr1_3:7985551-7985570 | Msa0101380:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | + | chr1_3:7985576-7985595 | Msa0101380:CDS | 25.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | - | chr1_3:7984933-7984952 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | + | chr1_3:7985474-7985493 | Msa0101380:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | + | chr1_3:7985551-7985570 | Msa0101380:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | + | chr1_3:7985576-7985595 | Msa0101380:CDS | 25.0% |
| AACAAAGGAACCATTCAAAA+GGG | - | chr1_3:7985236-7985255 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | - | chr1_3:7985237-7985256 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | + | chr1_3:7985298-7985317 | Msa0101380:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | - | chr1_3:7985400-7985419 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | + | chr1_3:7985403-7985422 | Msa0101380:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | + | chr1_3:7985428-7985447 | Msa0101380:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | + | chr1_3:7985487-7985506 | Msa0101380:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | + | chr1_3:7985563-7985582 | Msa0101380:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | - | chr1_3:7985742-7985761 | None:intergenic | 30.0% | |
| AACAAAGGAACCATTCAAAA+GGG | - | chr1_3:7985236-7985255 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | - | chr1_3:7985237-7985256 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | + | chr1_3:7985298-7985317 | Msa0101380:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | - | chr1_3:7985400-7985419 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | + | chr1_3:7985403-7985422 | Msa0101380:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | + | chr1_3:7985428-7985447 | Msa0101380:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | + | chr1_3:7985487-7985506 | Msa0101380:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | + | chr1_3:7985563-7985582 | Msa0101380:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | - | chr1_3:7985742-7985761 | None:intergenic | 30.0% | |
| TGACACAGAGCCTAAAATAT+TGG | + | chr1_3:7984920-7984939 | Msa0101380:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | - | chr1_3:7985062-7985081 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | + | chr1_3:7985144-7985163 | Msa0101380:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | + | chr1_3:7985223-7985242 | Msa0101380:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | - | chr1_3:7985235-7985254 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | - | chr1_3:7985314-7985333 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | - | chr1_3:7985359-7985378 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | + | chr1_3:7985361-7985380 | Msa0101380:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | + | chr1_3:7985467-7985486 | Msa0101380:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | + | chr1_3:7985586-7985605 | Msa0101380:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | - | chr1_3:7985689-7985708 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | - | chr1_3:7985703-7985722 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | - | chr1_3:7985722-7985741 | None:intergenic | 35.0% |
| TGACACAGAGCCTAAAATAT+TGG | + | chr1_3:7984920-7984939 | Msa0101380:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | - | chr1_3:7985062-7985081 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | + | chr1_3:7985144-7985163 | Msa0101380:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | + | chr1_3:7985223-7985242 | Msa0101380:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | - | chr1_3:7985235-7985254 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | - | chr1_3:7985314-7985333 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | - | chr1_3:7985359-7985378 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | + | chr1_3:7985361-7985380 | Msa0101380:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | + | chr1_3:7985467-7985486 | Msa0101380:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | + | chr1_3:7985586-7985605 | Msa0101380:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | - | chr1_3:7985689-7985708 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | - | chr1_3:7985703-7985722 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | - | chr1_3:7985722-7985741 | None:intergenic | 35.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | - | chr1_3:7984918-7984937 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | + | chr1_3:7984947-7984966 | Msa0101380:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | - | chr1_3:7985034-7985053 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | - | chr1_3:7985058-7985077 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | - | chr1_3:7985059-7985078 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | - | chr1_3:7985125-7985144 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | - | chr1_3:7985131-7985150 | None:intergenic | 40.0% | |
| TTGACGGAGAATGACAAAGA+AGG | - | chr1_3:7985343-7985362 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | + | chr1_3:7985343-7985362 | Msa0101380:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | + | chr1_3:7985435-7985454 | Msa0101380:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | + | chr1_3:7985436-7985455 | Msa0101380:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | + | chr1_3:7985598-7985617 | Msa0101380:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | + | chr1_3:7985603-7985622 | Msa0101380:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | + | chr1_3:7985629-7985648 | Msa0101380:CDS | 40.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | - | chr1_3:7984918-7984937 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | + | chr1_3:7984947-7984966 | Msa0101380:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | - | chr1_3:7985034-7985053 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | - | chr1_3:7985058-7985077 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | - | chr1_3:7985059-7985078 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | - | chr1_3:7985125-7985144 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | - | chr1_3:7985131-7985150 | None:intergenic | 40.0% | |
| TTGACGGAGAATGACAAAGA+AGG | - | chr1_3:7985343-7985362 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | + | chr1_3:7985343-7985362 | Msa0101380:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | + | chr1_3:7985435-7985454 | Msa0101380:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | + | chr1_3:7985436-7985455 | Msa0101380:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | + | chr1_3:7985598-7985617 | Msa0101380:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | + | chr1_3:7985603-7985622 | Msa0101380:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | + | chr1_3:7985629-7985648 | Msa0101380:CDS | 40.0% |
| GGAACCAAACTATGGATGGA+TGG | - | chr1_3:7984954-7984973 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | - | chr1_3:7984958-7984977 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | + | chr1_3:7984956-7984975 | Msa0101380:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | - | chr1_3:7984962-7984981 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | - | chr1_3:7985028-7985047 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | - | chr1_3:7985071-7985090 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | + | chr1_3:7985071-7985090 | Msa0101380:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | - | chr1_3:7985117-7985136 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | - | chr1_3:7985151-7985170 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | + | chr1_3:7985243-7985262 | Msa0101380:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | - | chr1_3:7985251-7985270 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | - | chr1_3:7985276-7985295 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | + | chr1_3:7985274-7985293 | Msa0101380:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | + | chr1_3:7985455-7985474 | Msa0101380:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | + | chr1_3:7985606-7985625 | Msa0101380:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | + | chr1_3:7985607-7985626 | Msa0101380:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | + | chr1_3:7985615-7985634 | Msa0101380:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | + | chr1_3:7985621-7985640 | Msa0101380:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | + | chr1_3:7985628-7985647 | Msa0101380:CDS | 45.0% |
| GGAACCAAACTATGGATGGA+TGG | - | chr1_3:7984954-7984973 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | - | chr1_3:7984958-7984977 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | + | chr1_3:7984956-7984975 | Msa0101380:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | - | chr1_3:7984962-7984981 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | - | chr1_3:7985028-7985047 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | - | chr1_3:7985071-7985090 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | + | chr1_3:7985071-7985090 | Msa0101380:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | - | chr1_3:7985117-7985136 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | - | chr1_3:7985151-7985170 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | + | chr1_3:7985243-7985262 | Msa0101380:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | - | chr1_3:7985251-7985270 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | - | chr1_3:7985276-7985295 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | + | chr1_3:7985274-7985293 | Msa0101380:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | + | chr1_3:7985455-7985474 | Msa0101380:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | + | chr1_3:7985606-7985625 | Msa0101380:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | + | chr1_3:7985607-7985626 | Msa0101380:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | + | chr1_3:7985615-7985634 | Msa0101380:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | + | chr1_3:7985621-7985640 | Msa0101380:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | + | chr1_3:7985628-7985647 | Msa0101380:CDS | 45.0% |
| !! | ATGATTGGCTCGGACTCCAT+CGG | - | chr1_3:7984975-7984994 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | + | chr1_3:7984975-7984994 | Msa0101380:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | - | chr1_3:7985004-7985023 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | - | chr1_3:7985111-7985130 | None:intergenic | 50.0% |
| CAGATGGACGCATACCAAGT+GGG | - | chr1_3:7985260-7985279 | None:intergenic | 50.0% | |
| !! | ATGATTGGCTCGGACTCCAT+CGG | - | chr1_3:7984975-7984994 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | + | chr1_3:7984975-7984994 | Msa0101380:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | - | chr1_3:7985004-7985023 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | - | chr1_3:7985111-7985130 | None:intergenic | 50.0% |
| CAGATGGACGCATACCAAGT+GGG | - | chr1_3:7985260-7985279 | None:intergenic | 50.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | + | chr1_3:7984974-7984993 | Msa0101380:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | + | chr1_3:7984976-7984995 | Msa0101380:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | - | chr1_3:7985012-7985031 | None:intergenic | 55.0% | |
| CTGCAGAACTCCACGACACA+CGG | + | chr1_3:7985184-7985203 | Msa0101380:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | - | chr1_3:7985261-7985280 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | + | chr1_3:7985258-7985277 | Msa0101380:CDS | 55.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | + | chr1_3:7984974-7984993 | Msa0101380:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | + | chr1_3:7984976-7984995 | Msa0101380:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | - | chr1_3:7985012-7985031 | None:intergenic | 55.0% | |
| CTGCAGAACTCCACGACACA+CGG | + | chr1_3:7985184-7985203 | Msa0101380:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | - | chr1_3:7985261-7985280 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | + | chr1_3:7985258-7985277 | Msa0101380:CDS | 55.0% | |
| AAGCGGCGATGGCTATGACG+AGG | - | chr1_3:7985017-7985036 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | + | chr1_3:7985095-7985114 | Msa0101380:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | - | chr1_3:7985101-7985120 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | + | chr1_3:7985161-7985180 | Msa0101380:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | - | chr1_3:7985166-7985185 | None:intergenic | 60.0% | |
| CAGAACTCCACGACACACGG+TGG | + | chr1_3:7985187-7985206 | Msa0101380:CDS | 60.0% | |
| AAGCGGCGATGGCTATGACG+AGG | - | chr1_3:7985017-7985036 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | + | chr1_3:7985095-7985114 | Msa0101380:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | - | chr1_3:7985101-7985120 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | + | chr1_3:7985161-7985180 | Msa0101380:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | - | chr1_3:7985166-7985185 | None:intergenic | 60.0% | |
| CAGAACTCCACGACACACGG+TGG | + | chr1_3:7985187-7985206 | Msa0101380:CDS | 60.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | - | chr1_3:7984985-7985004 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | + | chr1_3:7984986-7985005 | Msa0101380:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | - | chr1_3:7984990-7985009 | None:intergenic | 65.0% | |
| GTCGTGGAGTTCTGCAGCCG+CGG | - | chr1_3:7985181-7985200 | None:intergenic | 65.0% | |
| AGAGCAGCCACCGTGTGTCG+TGG | - | chr1_3:7985197-7985216 | None:intergenic | 65.0% | |
| ACGACACACGGTGGCTGCTC+TGG | + | chr1_3:7985196-7985215 | Msa0101380:CDS | 65.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | - | chr1_3:7984985-7985004 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | + | chr1_3:7984986-7985005 | Msa0101380:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | - | chr1_3:7984990-7985009 | None:intergenic | 65.0% | |
| GTCGTGGAGTTCTGCAGCCG+CGG | - | chr1_3:7985181-7985200 | None:intergenic | 65.0% | |
| AGAGCAGCCACCGTGTGTCG+TGG | - | chr1_3:7985197-7985216 | None:intergenic | 65.0% | |
| ACGACACACGGTGGCTGCTC+TGG | + | chr1_3:7985196-7985215 | Msa0101380:CDS | 65.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | + | chr1_3:7985083-7985102 | Msa0101380:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | + | chr1_3:7985084-7985103 | Msa0101380:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | + | chr1_3:7985085-7985104 | Msa0101380:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | - | chr1_3:7985092-7985111 | None:intergenic | 70.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | + | chr1_3:7985083-7985102 | Msa0101380:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | + | chr1_3:7985084-7985103 | Msa0101380:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | + | chr1_3:7985085-7985104 | Msa0101380:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | - | chr1_3:7985092-7985111 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 7984907 | 7985779 | 7984907 | ID=Msa0101380;Name=Msa0101380 |
| chr1_3 | mRNA | 7984907 | 7985779 | 7984907 | ID=Msa0101380-mRNA-1;Parent=Msa0101380;Name=Msa0101380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|290 |
| chr1_3 | exon | 7984907 | 7985779 | 7984907 | ID=Msa0101380-mRNA-1:exon:3122;Parent=Msa0101380-mRNA-1 |
| chr1_3 | CDS | 7984907 | 7985779 | 7984907 | ID=Msa0101380-mRNA-1:cds;Parent=Msa0101380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
