AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556270 MtrunA17_Chr4g0045011 80.000 195 6 3 1 167 8 197 8.83e-106 300
Msa0556270 MtrunA17_Chr4g0045001 71.930 114 10 2 57 148 46 159 1.12e-51 162
Msa0556270 MtrunA17_Chr8g0391431 38.994 159 62 4 32 155 15 173 8.06e-27 100
Msa0556270 MtrunA17_Chr5g0402421 40.625 128 41 3 61 155 51 176 7.00e-23 89.7
Msa0556270 MtrunA17_Chr6g0484871 38.406 138 57 3 57 167 13 149 2.56e-21 84.7
Msa0556270 MtrunA17_Chr8g0391441 38.554 166 72 3 32 167 4 169 6.56e-21 84.3
Msa0556270 MtrunA17_Chr5g0395991 48.718 78 34 3 88 161 51 126 3.13e-16 71.2
Msa0556270 MtrunA17_Chr1g0187341 43.269 104 37 2 61 143 11 113 2.07e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556270 AT1G14870.1 40.580 138 51 4 61 167 15 152 4.27e-27 100
Msa0556270 AT5G35525.1 42.029 138 49 4 61 167 15 152 3.28e-26 97.8
Msa0556270 AT3G18470.1 38.806 134 49 4 60 165 3 131 1.36e-22 87.8
Msa0556270 AT1G14870.2 41.748 103 39 1 62 143 16 118 1.06e-21 85.9
Msa0556270 AT1G49030.1 33.537 164 71 5 29 161 62 218 6.59e-21 85.9
Msa0556270 AT1G14880.1 35.507 138 58 4 61 167 14 151 7.52e-20 81.3
Msa0556270 AT3G18460.1 44.944 89 39 3 79 160 92 177 1.72e-19 81.3
Msa0556270 AT1G68630.1 38.931 131 50 4 62 164 29 157 6.75e-18 76.6
Msa0556270 AT1G68610.1 40.940 149 54 5 53 167 10 158 1.16e-16 73.2
Msa0556270 AT3G18450.1 38.202 89 47 2 79 160 90 177 2.32e-15 70.5
Msa0556270 AT2G40935.8 31.707 164 70 5 18 143 5 164 6.37e-15 69.3
Msa0556270 AT2G40935.9 31.707 164 70 5 18 143 5 164 6.37e-15 69.3
Msa0556270 AT2G40935.1 31.707 164 70 5 18 143 5 164 6.37e-15 69.3
Msa0556270 AT2G40935.6 31.707 164 70 5 18 143 5 164 6.37e-15 69.3
Msa0556270 AT2G40935.5 31.707 164 70 5 18 143 5 164 6.37e-15 69.3
Msa0556270 AT2G40935.3 54.237 59 22 2 88 143 97 153 5.73e-13 63.9
Msa0556270 AT2G40935.2 54.237 59 22 2 88 143 84 140 1.17e-12 62.8
Msa0556270 AT2G40935.7 54.237 59 22 2 88 143 84 140 1.17e-12 62.8
Msa0556270 AT2G40935.4 54.237 59 22 2 88 143 84 140 1.17e-12 62.8
Msa0556270 AT1G52200.1 34.646 127 61 4 38 143 30 155 1.60e-11 60.1
Msa0556270 AT1G52200.2 34.646 127 61 4 38 143 30 155 1.63e-11 60.1
Msa0556270 AT1G58320.1 38.235 136 52 8 61 167 16 148 3.89e-11 58.5
Msa0556270 AT5G51400.1 39.362 94 52 3 73 166 126 214 5.57e-11 59.3

Find 52 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGATGGAACAATTTA+TGG 0.162988 4_1:-54356832 Msa0556270:CDS
CTTGAACTGGTGCTGATATA+TGG 0.295600 4_1:+54357503 None:intergenic
TCTTGGGATGCCCCTTGAAC+TGG 0.352985 4_1:+54357490 None:intergenic
ACATGATCTGTTTCACTTAC+GGG 0.365548 4_1:+54357632 None:intergenic
GTTGACCAGTGATGTGTTCT+TGG 0.377366 4_1:+54357473 None:intergenic
TGAAACTTGTGCTCTTTGTC+AGG 0.408519 4_1:-54356689 Msa0556270:CDS
GGTGGTGCCACTGCAACTCC+TGG 0.418448 4_1:+54355686 None:intergenic
CTTGCCAGAGGCACCTTGTA+TGG 0.422756 4_1:-54356734 Msa0556270:CDS
ACACGATCCTTACAGATTCC+AGG 0.423026 4_1:+54357425 None:intergenic
AGAACACATCACTGGTCAAC+TGG 0.424557 4_1:-54357470 Msa0556270:CDS
TGCCGTTGTCTTGATGATCC+TGG 0.428665 4_1:-54357443 Msa0556270:CDS
AACAATTTATGGGGCGCTAC+TGG 0.429042 4_1:-54356821 Msa0556270:CDS
TACATGATCTGTTTCACTTA+CGG 0.430083 4_1:+54357631 None:intergenic
CTGATATATGGAGGAGCATA+AGG 0.431906 4_1:+54357515 None:intergenic
GACACTGGCATGCCATAACT+TGG 0.469680 4_1:+54357542 None:intergenic
TTGACCAGTGATGTGTTCTT+GGG 0.472581 4_1:+54357474 None:intergenic
GGGGCGCTACTGGCTGTGTC+GGG 0.479808 4_1:-54356811 Msa0556270:CDS
TGGGGCGCTACTGGCTGTGT+CGG 0.483383 4_1:-54356812 Msa0556270:CDS
CTTGTCATAGGTGAAATCAT+TGG 0.483757 4_1:+54355665 None:intergenic
CAGTCCATACAAGGTGCCTC+TGG 0.489012 4_1:+54356730 None:intergenic
GTCCTACAAATGCCAAGTTA+TGG 0.492297 4_1:-54357554 Msa0556270:CDS
TGCCATAACTTGGCATTTGT+AGG 0.492803 4_1:+54357552 None:intergenic
CTTGTGATGGAACAATTTAT+GGG 0.493346 4_1:-54356831 Msa0556270:CDS
CATATATCAGCACCAGTTCA+AGG 0.493929 4_1:-54357502 Msa0556270:CDS
GGAGCATAAGGTTGGGACAC+TGG 0.519387 4_1:+54357527 None:intergenic
GGACATAGCCTTGACCTTGA+GGG 0.520075 4_1:+54357573 None:intergenic
TGATGATCCTGGAATCTGTA+AGG 0.521935 4_1:-54357432 Msa0556270:CDS
TATATGGAGGAGCATAAGGT+TGG 0.523925 4_1:+54357519 None:intergenic
TGGCCTCTGTCTTTCCACGT+TGG 0.547801 4_1:+54355706 None:intergenic
TGAACTAAGCAGTCCATACA+AGG 0.555249 4_1:+54356721 None:intergenic
TATGCAGATCATAGTAGTCA+TGG 0.562595 4_1:-54357608 Msa0556270:CDS
ATATATCAGCACCAGTTCAA+GGG 0.567137 4_1:-54357501 Msa0556270:CDS
ATATGGAGGAGCATAAGGTT+GGG 0.569101 4_1:+54357520 None:intergenic
GTTATTATCGCTCAAAACTG+AGG 0.570843 4_1:-54356768 Msa0556270:CDS
ACAGAGGCCAGGAGTTGCAG+TGG 0.578607 4_1:-54355693 Msa0556270:CDS
AACGTGGAAAGACAGAGGCC+AGG 0.580413 4_1:-54355704 Msa0556270:CDS
AGGACATAGCCTTGACCTTG+AGG 0.581870 4_1:+54357572 None:intergenic
GACATAGCCTTGACCTTGAG+GGG 0.583468 4_1:+54357574 None:intergenic
TATGCAGCTTGCACTTGTGA+TGG 0.596135 4_1:-54356844 Msa0556270:intron
GTCATAGGTGAAATCATTGG+TGG 0.613790 4_1:+54355668 None:intergenic
GCATCCCAAGAACACATCAC+TGG 0.621240 4_1:-54357478 Msa0556270:CDS
TATATCAGCACCAGTTCAAG+GGG 0.623123 4_1:-54357500 Msa0556270:CDS
GATCATAGTAGTCATGGCCA+TGG 0.626268 4_1:-54357602 Msa0556270:CDS
TTATTATCGCTCAAAACTGA+GGG 0.630443 4_1:-54356767 Msa0556270:CDS
TTGTGATGGAACAATTTATG+GGG 0.659307 4_1:-54356830 Msa0556270:CDS
TTCCAGGATCATCAAGACAA+CGG 0.663060 4_1:+54357441 None:intergenic
TGATCTGTTTCACTTACGGG+AGG 0.664833 4_1:+54357635 None:intergenic
TATAGGTTGGGATGCCAACG+TGG 0.683467 4_1:-54355720 Msa0556270:intron
ACATAGCCTTGACCTTGAGG+GGG 0.690202 4_1:+54357575 None:intergenic
ATGCCAACGTGGAAAGACAG+AGG 0.696902 4_1:-54355709 Msa0556270:CDS
GAACTGGTGCTGATATATGG+AGG 0.713639 4_1:+54357506 None:intergenic
GGCACAATATGACTTGCCAG+AGG 0.740534 4_1:-54356746 Msa0556270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACACATATTATATATATTA+TGG - chr4_1:54355928-54355947 Msa0556270:intron 10.0%
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_1:54356347-54356366 Msa0556270:intron 10.0%
!! AACACATATTATATATATTA+TGG - chr4_1:54355928-54355947 Msa0556270:intron 10.0%
!! ATTAAATGAAATTAAGTTAA+GGG - chr4_1:54356347-54356366 Msa0556270:intron 10.0%
!!! ATAATATGTGTTTTAAAGAA+AGG + chr4_1:54355920-54355939 None:intergenic 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_1:54355962-54355981 Msa0556270:intron 15.0%
!!! AAAGCTTTTACATAAAATAT+AGG - chr4_1:54356063-54356082 Msa0556270:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_1:54356343-54356362 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_1:54356346-54356365 Msa0556270:intron 15.0%
!!! CATTATTATTTATCATGTTT+TGG - chr4_1:54356427-54356446 Msa0556270:intron 15.0%
!! TCAATATACTAAATTAAACT+TGG - chr4_1:54356703-54356722 Msa0556270:CDS 15.0%
!!! CATTTTATTTTTCTATTTGT+TGG + chr4_1:54357192-54357211 None:intergenic 15.0%
!! TAGAAAAATCTATTACAATA+AGG - chr4_1:54357247-54357266 Msa0556270:intron 15.0%
!!! ATAAGATTTTTATCTTAGTA+AGG + chr4_1:54357277-54357296 None:intergenic 15.0%
!!! ATAATATGTGTTTTAAAGAA+AGG + chr4_1:54355920-54355939 None:intergenic 15.0%
!!! TTTTTCTTTTCTAATTGATA+AGG - chr4_1:54355962-54355981 Msa0556270:intron 15.0%
!!! AAAGCTTTTACATAAAATAT+AGG - chr4_1:54356063-54356082 Msa0556270:intron 15.0%
!!! CTTAATTTCATTTAATGTTT+TGG + chr4_1:54356343-54356362 None:intergenic 15.0%
!! CATTAAATGAAATTAAGTTA+AGG - chr4_1:54356346-54356365 Msa0556270:intron 15.0%
!!! CATTATTATTTATCATGTTT+TGG - chr4_1:54356427-54356446 Msa0556270:intron 15.0%
!! TCAATATACTAAATTAAACT+TGG - chr4_1:54356703-54356722 Msa0556270:CDS 15.0%
!!! CATTTTATTTTTCTATTTGT+TGG + chr4_1:54357192-54357211 None:intergenic 15.0%
!! TAGAAAAATCTATTACAATA+AGG - chr4_1:54357247-54357266 Msa0556270:intron 15.0%
!!! ATAAGATTTTTATCTTAGTA+AGG + chr4_1:54357277-54357296 None:intergenic 15.0%
!!! TATCTTTTTTCATGTCATTT+TGG - chr4_1:54356139-54356158 Msa0556270:intron 20.0%
!!! GTTTTTTCTCATGTAATTTT+GGG + chr4_1:54356313-54356332 None:intergenic 20.0%
!!! AGTTTTTTCTCATGTAATTT+TGG + chr4_1:54356314-54356333 None:intergenic 20.0%
!! AAGTATTTGAAGAAAGAATT+AGG + chr4_1:54356684-54356703 None:intergenic 20.0%
!!! TATCTTTTTTCATGTCATTT+TGG - chr4_1:54356139-54356158 Msa0556270:intron 20.0%
!!! GTTTTTTCTCATGTAATTTT+GGG + chr4_1:54356313-54356332 None:intergenic 20.0%
!!! AGTTTTTTCTCATGTAATTT+TGG + chr4_1:54356314-54356333 None:intergenic 20.0%
!! AAGTATTTGAAGAAAGAATT+AGG + chr4_1:54356684-54356703 None:intergenic 20.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_1:54355967-54355986 Msa0556270:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_1:54356111-54356130 Msa0556270:intron 25.0%
! ATGACATGAAAAAAGATACA+AGG + chr4_1:54356137-54356156 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_1:54356177-54356196 Msa0556270:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_1:54356278-54356297 Msa0556270:intron 25.0%
! TGTTGTTGGATATATAATAG+AGG - chr4_1:54356840-54356859 Msa0556270:CDS 25.0%
! GAATAAAATGTAACGTCTTA+AGG - chr4_1:54357122-54357141 Msa0556270:intron 25.0%
!!! TTACATTTTTGAGGTATTGA+AGG - chr4_1:54357467-54357486 Msa0556270:CDS 25.0%
!! CTTTTCTAATTGATAAGGTT+TGG - chr4_1:54355967-54355986 Msa0556270:intron 25.0%
!! TTTAATTTCAAGTGACGTTT+AGG - chr4_1:54356111-54356130 Msa0556270:intron 25.0%
! ATGACATGAAAAAAGATACA+AGG + chr4_1:54356137-54356156 None:intergenic 25.0%
!!! ATTTTCAAGCTTCAAATCTA+TGG - chr4_1:54356177-54356196 Msa0556270:intron 25.0%
! CTTGAAAATTCATATGCAAA+CGG - chr4_1:54356278-54356297 Msa0556270:intron 25.0%
! TGTTGTTGGATATATAATAG+AGG - chr4_1:54356840-54356859 Msa0556270:CDS 25.0%
! GAATAAAATGTAACGTCTTA+AGG - chr4_1:54357122-54357141 Msa0556270:intron 25.0%
!!! TTACATTTTTGAGGTATTGA+AGG - chr4_1:54357467-54357486 Msa0556270:CDS 25.0%
TACATGATCTGTTTCACTTA+CGG + chr4_1:54355674-54355693 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_1:54356006-54356025 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_1:54356007-54356026 None:intergenic 30.0%
! TTTATTTACCTGTGACTTGT+CGG - chr4_1:54356201-54356220 Msa0556270:intron 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_1:54356249-54356268 None:intergenic 30.0%
AAATTAAGTTAAGGGACAAC+AGG - chr4_1:54356355-54356374 Msa0556270:intron 30.0%
! ACTTGTGATGGAACAATTTA+TGG - chr4_1:54356470-54356489 Msa0556270:intron 30.0%
! CTTGTGATGGAACAATTTAT+GGG - chr4_1:54356471-54356490 Msa0556270:intron 30.0%
! TTGTGATGGAACAATTTATG+GGG - chr4_1:54356472-54356491 Msa0556270:intron 30.0%
TTATTATCGCTCAAAACTGA+GGG - chr4_1:54356535-54356554 Msa0556270:intron 30.0%
TGTTGGATATATAATAGAGG+TGG - chr4_1:54356843-54356862 Msa0556270:intron 30.0%
! CCTTAAGGTATTAGGTATAT+GGG + chr4_1:54356869-54356888 None:intergenic 30.0%
! ACCTTAAGGTATTAGGTATA+TGG + chr4_1:54356870-54356889 None:intergenic 30.0%
! TACCTAATACCTTAAGGTTT+TGG - chr4_1:54356872-54356891 Msa0556270:intron 30.0%
! TTCCAAAACCTTAAGGTATT+AGG + chr4_1:54356877-54356896 None:intergenic 30.0%
!!! TAATACCTTAAGGTTTTGGA+AGG - chr4_1:54356876-54356895 Msa0556270:intron 30.0%
TTGTGTTGGATCCTATTATA+GGG - chr4_1:54357028-54357047 Msa0556270:intron 30.0%
! AATGTAACGTCTTAAGGTTT+TGG - chr4_1:54357128-54357147 Msa0556270:intron 30.0%
! ATGTAACGTCTTAAGGTTTT+GGG - chr4_1:54357129-54357148 Msa0556270:intron 30.0%
AACTTGCACTTAATACTAAC+CGG - chr4_1:54357300-54357319 Msa0556270:intron 30.0%
! ATCTAGTTGAAGTTTGTTCA+AGG + chr4_1:54357336-54357355 None:intergenic 30.0%
!! GGTTCTAACTTACATTTTTG+AGG - chr4_1:54357458-54357477 Msa0556270:CDS 30.0%
AGTTGTCAAAAACAAGTCAA+GGG + chr4_1:54357548-54357567 None:intergenic 30.0%
TAGTTGTCAAAAACAAGTCA+AGG + chr4_1:54357549-54357568 None:intergenic 30.0%
! ACTAACTGAGTCTGAAATAT+AGG - chr4_1:54357565-54357584 Msa0556270:CDS 30.0%
TACATGATCTGTTTCACTTA+CGG + chr4_1:54355674-54355693 None:intergenic 30.0%
TCAATCCAAAAGTAACACAT+GGG + chr4_1:54356006-54356025 None:intergenic 30.0%
ATCAATCCAAAAGTAACACA+TGG + chr4_1:54356007-54356026 None:intergenic 30.0%
! TTTATTTACCTGTGACTTGT+CGG - chr4_1:54356201-54356220 Msa0556270:intron 30.0%
TCATGTTCATATGCAAACAT+GGG + chr4_1:54356249-54356268 None:intergenic 30.0%
AAATTAAGTTAAGGGACAAC+AGG - chr4_1:54356355-54356374 Msa0556270:intron 30.0%
! ACTTGTGATGGAACAATTTA+TGG - chr4_1:54356470-54356489 Msa0556270:intron 30.0%
! CTTGTGATGGAACAATTTAT+GGG - chr4_1:54356471-54356490 Msa0556270:intron 30.0%
! TTGTGATGGAACAATTTATG+GGG - chr4_1:54356472-54356491 Msa0556270:intron 30.0%
TTATTATCGCTCAAAACTGA+GGG - chr4_1:54356535-54356554 Msa0556270:intron 30.0%
TGTTGGATATATAATAGAGG+TGG - chr4_1:54356843-54356862 Msa0556270:intron 30.0%
! CCTTAAGGTATTAGGTATAT+GGG + chr4_1:54356869-54356888 None:intergenic 30.0%
! ACCTTAAGGTATTAGGTATA+TGG + chr4_1:54356870-54356889 None:intergenic 30.0%
! TACCTAATACCTTAAGGTTT+TGG - chr4_1:54356872-54356891 Msa0556270:intron 30.0%
! TTCCAAAACCTTAAGGTATT+AGG + chr4_1:54356877-54356896 None:intergenic 30.0%
!!! TAATACCTTAAGGTTTTGGA+AGG - chr4_1:54356876-54356895 Msa0556270:intron 30.0%
TTGTGTTGGATCCTATTATA+GGG - chr4_1:54357028-54357047 Msa0556270:intron 30.0%
! AATGTAACGTCTTAAGGTTT+TGG - chr4_1:54357128-54357147 Msa0556270:intron 30.0%
! ATGTAACGTCTTAAGGTTTT+GGG - chr4_1:54357129-54357148 Msa0556270:intron 30.0%
AACTTGCACTTAATACTAAC+CGG - chr4_1:54357300-54357319 Msa0556270:intron 30.0%
! ATCTAGTTGAAGTTTGTTCA+AGG + chr4_1:54357336-54357355 None:intergenic 30.0%
!! GGTTCTAACTTACATTTTTG+AGG - chr4_1:54357458-54357477 Msa0556270:CDS 30.0%
AGTTGTCAAAAACAAGTCAA+GGG + chr4_1:54357548-54357567 None:intergenic 30.0%
TAGTTGTCAAAAACAAGTCA+AGG + chr4_1:54357549-54357568 None:intergenic 30.0%
! ACTAACTGAGTCTGAAATAT+AGG - chr4_1:54357565-54357584 Msa0556270:CDS 30.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_1:54355673-54355692 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_1:54355694-54355713 Msa0556270:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_1:54355801-54355820 Msa0556270:intron 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_1:54356025-54356044 Msa0556270:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_1:54356250-54356269 None:intergenic 35.0%
! TCATGTAATTTTGGGCCTTT+TGG + chr4_1:54356305-54356324 None:intergenic 35.0%
GTTATTATCGCTCAAAACTG+AGG - chr4_1:54356534-54356553 Msa0556270:intron 35.0%
TATAGAGAACTCAAAAACCG+TGG - chr4_1:54356638-54356657 Msa0556270:intron 35.0%
TGAGATGAGAAAACATGGTT+TGG - chr4_1:54356750-54356769 Msa0556270:CDS 35.0%
ATGTTGAGTTCAAGTGTAAG+TGG - chr4_1:54356785-54356804 Msa0556270:CDS 35.0%
GTCAATGGGTAAAATGTTGT+TGG - chr4_1:54356826-54356845 Msa0556270:CDS 35.0%
CCCATATACCTAATACCTTA+AGG - chr4_1:54356866-54356885 Msa0556270:intron 35.0%
CTTGTGTTGGATCCTATTAT+AGG - chr4_1:54357027-54357046 Msa0556270:intron 35.0%
ATTAAGAAAGCAGAGATCCT+GGG + chr4_1:54357417-54357436 None:intergenic 35.0%
AATTAAGAAAGCAGAGATCC+TGG + chr4_1:54357418-54357437 None:intergenic 35.0%
! ATTTTTGCCAGTTTCCAAGT+TGG - chr4_1:54357435-54357454 Msa0556270:CDS 35.0%
! TTTTTGCCAGTTTCCAAGTT+GGG - chr4_1:54357436-54357455 Msa0556270:CDS 35.0%
! ACTGAGTCTGAAATATAGGT+TGG - chr4_1:54357569-54357588 Msa0556270:CDS 35.0%
! CTGAGTCTGAAATATAGGTT+GGG - chr4_1:54357570-54357589 Msa0556270:CDS 35.0%
CTTGTCATAGGTGAAATCAT+TGG + chr4_1:54357640-54357659 None:intergenic 35.0%
ACATGATCTGTTTCACTTAC+GGG + chr4_1:54355673-54355692 None:intergenic 35.0%
TATGCAGATCATAGTAGTCA+TGG - chr4_1:54355694-54355713 Msa0556270:CDS 35.0%
ATATATCAGCACCAGTTCAA+GGG - chr4_1:54355801-54355820 Msa0556270:intron 35.0%
ATAGCAGAGATAGTAGACAA+AGG - chr4_1:54356025-54356044 Msa0556270:intron 35.0%
CTCATGTTCATATGCAAACA+TGG + chr4_1:54356250-54356269 None:intergenic 35.0%
! TCATGTAATTTTGGGCCTTT+TGG + chr4_1:54356305-54356324 None:intergenic 35.0%
GTTATTATCGCTCAAAACTG+AGG - chr4_1:54356534-54356553 Msa0556270:intron 35.0%
TATAGAGAACTCAAAAACCG+TGG - chr4_1:54356638-54356657 Msa0556270:intron 35.0%
TGAGATGAGAAAACATGGTT+TGG - chr4_1:54356750-54356769 Msa0556270:CDS 35.0%
ATGTTGAGTTCAAGTGTAAG+TGG - chr4_1:54356785-54356804 Msa0556270:CDS 35.0%
GTCAATGGGTAAAATGTTGT+TGG - chr4_1:54356826-54356845 Msa0556270:CDS 35.0%
CCCATATACCTAATACCTTA+AGG - chr4_1:54356866-54356885 Msa0556270:intron 35.0%
CTTGTGTTGGATCCTATTAT+AGG - chr4_1:54357027-54357046 Msa0556270:intron 35.0%
ATTAAGAAAGCAGAGATCCT+GGG + chr4_1:54357417-54357436 None:intergenic 35.0%
AATTAAGAAAGCAGAGATCC+TGG + chr4_1:54357418-54357437 None:intergenic 35.0%
! ATTTTTGCCAGTTTCCAAGT+TGG - chr4_1:54357435-54357454 Msa0556270:CDS 35.0%
! TTTTTGCCAGTTTCCAAGTT+GGG - chr4_1:54357436-54357455 Msa0556270:CDS 35.0%
! ACTGAGTCTGAAATATAGGT+TGG - chr4_1:54357569-54357588 Msa0556270:CDS 35.0%
! CTGAGTCTGAAATATAGGTT+GGG - chr4_1:54357570-54357589 Msa0556270:CDS 35.0%
CTTGTCATAGGTGAAATCAT+TGG + chr4_1:54357640-54357659 None:intergenic 35.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_1:54355748-54355767 Msa0556270:intron 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_1:54355753-54355772 None:intergenic 40.0%
! ATATGGAGGAGCATAAGGTT+GGG + chr4_1:54355785-54355804 None:intergenic 40.0%
! TATATGGAGGAGCATAAGGT+TGG + chr4_1:54355786-54355805 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_1:54355790-54355809 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_1:54355802-54355821 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_1:54355800-54355819 Msa0556270:intron 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_1:54355802-54355821 Msa0556270:intron 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_1:54355831-54355850 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_1:54355864-54355883 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_1:54355870-54355889 Msa0556270:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_1:54355998-54356017 Msa0556270:intron 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_1:54356216-54356235 Msa0556270:intron 40.0%
TCATATGCAAACGGACCAAA+AGG - chr4_1:54356287-54356306 Msa0556270:intron 40.0%
TGAACTAAGCAGTCCATACA+AGG + chr4_1:54356584-54356603 None:intergenic 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_1:54356613-54356632 Msa0556270:intron 40.0%
CTATGCTCATGTCATATCCA+CGG + chr4_1:54356658-54356677 None:intergenic 40.0%
GGATCTCTTAAGCAATGTCT+CGG - chr4_1:54356724-54356743 Msa0556270:CDS 40.0%
GATCTCTTAAGCAATGTCTC+GGG - chr4_1:54356725-54356744 Msa0556270:CDS 40.0%
! GGGTTTGAGATGAGAAAACA+TGG - chr4_1:54356745-54356764 Msa0556270:CDS 40.0%
AGTCTCACATCTCATGTCAA+TGG - chr4_1:54356811-54356830 Msa0556270:CDS 40.0%
GTCTCACATCTCATGTCAAT+GGG - chr4_1:54356812-54356831 Msa0556270:CDS 40.0%
CATCTCCTTCCAAAACCTTA+AGG + chr4_1:54356884-54356903 None:intergenic 40.0%
!!! TAAGGTTTTGGAAGGAGATG+TGG - chr4_1:54356884-54356903 Msa0556270:intron 40.0%
AGGGATCTGATACAACTTGT+CGG + chr4_1:54356975-54356994 None:intergenic 40.0%
TTGTTGGATTCAAGTGTGAG+TGG - chr4_1:54357075-54357094 Msa0556270:intron 40.0%
!!! AACGTCTTAAGGTTTTGGGT+TGG - chr4_1:54357133-54357152 Msa0556270:intron 40.0%
!! TTGGACTCTAGAGCACAAAA+GGG + chr4_1:54357173-54357192 None:intergenic 40.0%
!! CCTCACTGATCACTTTTAGT+TGG + chr4_1:54357391-54357410 None:intergenic 40.0%
CCAACTAAAAGTGATCAGTG+AGG - chr4_1:54357388-54357407 Msa0556270:intron 40.0%
! TTTTGCCAGTTTCCAAGTTG+GGG - chr4_1:54357437-54357456 Msa0556270:CDS 40.0%
TGTAAGTTAGAACCCCAACT+TGG + chr4_1:54357452-54357471 None:intergenic 40.0%
GTCATAGGTGAAATCATTGG+TGG + chr4_1:54357637-54357656 None:intergenic 40.0%
GTCCTACAAATGCCAAGTTA+TGG - chr4_1:54355748-54355767 Msa0556270:intron 40.0%
TGCCATAACTTGGCATTTGT+AGG + chr4_1:54355753-54355772 None:intergenic 40.0%
! ATATGGAGGAGCATAAGGTT+GGG + chr4_1:54355785-54355804 None:intergenic 40.0%
! TATATGGAGGAGCATAAGGT+TGG + chr4_1:54355786-54355805 None:intergenic 40.0%
! CTGATATATGGAGGAGCATA+AGG + chr4_1:54355790-54355809 None:intergenic 40.0%
!! CTTGAACTGGTGCTGATATA+TGG + chr4_1:54355802-54355821 None:intergenic 40.0%
CATATATCAGCACCAGTTCA+AGG - chr4_1:54355800-54355819 Msa0556270:intron 40.0%
TATATCAGCACCAGTTCAAG+GGG - chr4_1:54355802-54355821 Msa0556270:intron 40.0%
TTGACCAGTGATGTGTTCTT+GGG + chr4_1:54355831-54355850 None:intergenic 40.0%
TTCCAGGATCATCAAGACAA+CGG + chr4_1:54355864-54355883 None:intergenic 40.0%
TGATGATCCTGGAATCTGTA+AGG - chr4_1:54355870-54355889 Msa0556270:intron 40.0%
!!! TTCTGCCCATGTGTTACTTT+TGG - chr4_1:54355998-54356017 Msa0556270:intron 40.0%
CTTGTCGGTCTTCAAATCTA+TGG - chr4_1:54356216-54356235 Msa0556270:intron 40.0%
TCATATGCAAACGGACCAAA+AGG - chr4_1:54356287-54356306 Msa0556270:intron 40.0%
TGAACTAAGCAGTCCATACA+AGG + chr4_1:54356584-54356603 None:intergenic 40.0%
TGAAACTTGTGCTCTTTGTC+AGG - chr4_1:54356613-54356632 Msa0556270:intron 40.0%
CTATGCTCATGTCATATCCA+CGG + chr4_1:54356658-54356677 None:intergenic 40.0%
GGATCTCTTAAGCAATGTCT+CGG - chr4_1:54356724-54356743 Msa0556270:CDS 40.0%
GATCTCTTAAGCAATGTCTC+GGG - chr4_1:54356725-54356744 Msa0556270:CDS 40.0%
! GGGTTTGAGATGAGAAAACA+TGG - chr4_1:54356745-54356764 Msa0556270:CDS 40.0%
AGTCTCACATCTCATGTCAA+TGG - chr4_1:54356811-54356830 Msa0556270:CDS 40.0%
GTCTCACATCTCATGTCAAT+GGG - chr4_1:54356812-54356831 Msa0556270:CDS 40.0%
CATCTCCTTCCAAAACCTTA+AGG + chr4_1:54356884-54356903 None:intergenic 40.0%
!!! TAAGGTTTTGGAAGGAGATG+TGG - chr4_1:54356884-54356903 Msa0556270:intron 40.0%
AGGGATCTGATACAACTTGT+CGG + chr4_1:54356975-54356994 None:intergenic 40.0%
TTGTTGGATTCAAGTGTGAG+TGG - chr4_1:54357075-54357094 Msa0556270:intron 40.0%
!!! AACGTCTTAAGGTTTTGGGT+TGG - chr4_1:54357133-54357152 Msa0556270:intron 40.0%
!! TTGGACTCTAGAGCACAAAA+GGG + chr4_1:54357173-54357192 None:intergenic 40.0%
!! CCTCACTGATCACTTTTAGT+TGG + chr4_1:54357391-54357410 None:intergenic 40.0%
CCAACTAAAAGTGATCAGTG+AGG - chr4_1:54357388-54357407 Msa0556270:intron 40.0%
! TTTTGCCAGTTTCCAAGTTG+GGG - chr4_1:54357437-54357456 Msa0556270:CDS 40.0%
TGTAAGTTAGAACCCCAACT+TGG + chr4_1:54357452-54357471 None:intergenic 40.0%
GTCATAGGTGAAATCATTGG+TGG + chr4_1:54357637-54357656 None:intergenic 40.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_1:54355670-54355689 None:intergenic 45.0%
GATCATAGTAGTCATGGCCA+TGG - chr4_1:54355700-54355719 Msa0556270:CDS 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_1:54355799-54355818 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_1:54355832-54355851 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_1:54355832-54355851 Msa0556270:intron 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_1:54355880-54355899 None:intergenic 45.0%
TTTGAAGACCGACAAGTCAC+AGG + chr4_1:54356212-54356231 None:intergenic 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_1:54356458-54356477 Msa0556270:intron 45.0%
! AACAATTTATGGGGCGCTAC+TGG - chr4_1:54356481-54356500 Msa0556270:intron 45.0%
CGTGGATATGACATGAGCAT+AGG - chr4_1:54356656-54356675 Msa0556270:intron 45.0%
ACAACTTGTCGGGGAGTTTA+GGG + chr4_1:54356964-54356983 None:intergenic 45.0%
TACAACTTGTCGGGGAGTTT+AGG + chr4_1:54356965-54356984 None:intergenic 45.0%
GGATCTGATACAACTTGTCG+GGG + chr4_1:54356973-54356992 None:intergenic 45.0%
GGGATCTGATACAACTTGTC+GGG + chr4_1:54356974-54356993 None:intergenic 45.0%
GACAAGTTGTATCAGATCCC+TGG - chr4_1:54356974-54356993 Msa0556270:intron 45.0%
GTTGTATCAGATCCCTGGTT+CGG - chr4_1:54356979-54356998 Msa0556270:intron 45.0%
TTGGATCCTATTATAGGGCG+TGG - chr4_1:54357033-54357052 Msa0556270:intron 45.0%
TGGATCCTATTATAGGGCGT+GGG - chr4_1:54357034-54357053 Msa0556270:intron 45.0%
!! TGGACTCTAGAGCACAAAAG+GGG + chr4_1:54357172-54357191 None:intergenic 45.0%
!! GTTGGACTCTAGAGCACAAA+AGG + chr4_1:54357174-54357193 None:intergenic 45.0%
TGTTCAAGGTAGTCACAAGC+CGG + chr4_1:54357322-54357341 None:intergenic 45.0%
TAGAACCCCAACTTGGAAAC+TGG + chr4_1:54357445-54357464 None:intergenic 45.0%
TGATCTGTTTCACTTACGGG+AGG + chr4_1:54355670-54355689 None:intergenic 45.0%
GATCATAGTAGTCATGGCCA+TGG - chr4_1:54355700-54355719 Msa0556270:CDS 45.0%
!! GAACTGGTGCTGATATATGG+AGG + chr4_1:54355799-54355818 None:intergenic 45.0%
GTTGACCAGTGATGTGTTCT+TGG + chr4_1:54355832-54355851 None:intergenic 45.0%
AGAACACATCACTGGTCAAC+TGG - chr4_1:54355832-54355851 Msa0556270:intron 45.0%
ACACGATCCTTACAGATTCC+AGG + chr4_1:54355880-54355899 None:intergenic 45.0%
TTTGAAGACCGACAAGTCAC+AGG + chr4_1:54356212-54356231 None:intergenic 45.0%
TATGCAGCTTGCACTTGTGA+TGG - chr4_1:54356458-54356477 Msa0556270:intron 45.0%
! AACAATTTATGGGGCGCTAC+TGG - chr4_1:54356481-54356500 Msa0556270:intron 45.0%
CGTGGATATGACATGAGCAT+AGG - chr4_1:54356656-54356675 Msa0556270:intron 45.0%
ACAACTTGTCGGGGAGTTTA+GGG + chr4_1:54356964-54356983 None:intergenic 45.0%
TACAACTTGTCGGGGAGTTT+AGG + chr4_1:54356965-54356984 None:intergenic 45.0%
GGATCTGATACAACTTGTCG+GGG + chr4_1:54356973-54356992 None:intergenic 45.0%
GGGATCTGATACAACTTGTC+GGG + chr4_1:54356974-54356993 None:intergenic 45.0%
GACAAGTTGTATCAGATCCC+TGG - chr4_1:54356974-54356993 Msa0556270:intron 45.0%
GTTGTATCAGATCCCTGGTT+CGG - chr4_1:54356979-54356998 Msa0556270:intron 45.0%
TTGGATCCTATTATAGGGCG+TGG - chr4_1:54357033-54357052 Msa0556270:intron 45.0%
TGGATCCTATTATAGGGCGT+GGG - chr4_1:54357034-54357053 Msa0556270:intron 45.0%
!! TGGACTCTAGAGCACAAAAG+GGG + chr4_1:54357172-54357191 None:intergenic 45.0%
!! GTTGGACTCTAGAGCACAAA+AGG + chr4_1:54357174-54357193 None:intergenic 45.0%
TGTTCAAGGTAGTCACAAGC+CGG + chr4_1:54357322-54357341 None:intergenic 45.0%
TAGAACCCCAACTTGGAAAC+TGG + chr4_1:54357445-54357464 None:intergenic 45.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_1:54355730-54355749 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_1:54355731-54355750 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_1:54355732-54355751 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_1:54355733-54355752 None:intergenic 50.0%
GACACTGGCATGCCATAACT+TGG + chr4_1:54355763-54355782 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_1:54355824-54355843 Msa0556270:intron 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_1:54355859-54355878 Msa0556270:intron 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_1:54356556-54356575 Msa0556270:intron 50.0%
AGGGAAGTCGGAAGCAACAA+CGG + chr4_1:54356945-54356964 None:intergenic 50.0%
GATGGAGCTGGATCTTGTGT+TGG - chr4_1:54357014-54357033 Msa0556270:intron 50.0%
TGCTTCCCACGCCCTATAAT+AGG + chr4_1:54357042-54357061 None:intergenic 50.0%
GCACTTGAGGGAGAGATTGT+TGG - chr4_1:54357059-54357078 Msa0556270:intron 50.0%
!! GGACTCTAGAGCACAAAAGG+GGG + chr4_1:54357171-54357190 None:intergenic 50.0%
AGTGATCAGTGAGGTTACCC+AGG - chr4_1:54357397-54357416 Msa0556270:intron 50.0%
! TATAGGTTGGGATGCCAACG+TGG - chr4_1:54357582-54357601 Msa0556270:CDS 50.0%
ATGCCAACGTGGAAAGACAG+AGG - chr4_1:54357593-54357612 Msa0556270:CDS 50.0%
! ACATAGCCTTGACCTTGAGG+GGG + chr4_1:54355730-54355749 None:intergenic 50.0%
! GACATAGCCTTGACCTTGAG+GGG + chr4_1:54355731-54355750 None:intergenic 50.0%
! GGACATAGCCTTGACCTTGA+GGG + chr4_1:54355732-54355751 None:intergenic 50.0%
! AGGACATAGCCTTGACCTTG+AGG + chr4_1:54355733-54355752 None:intergenic 50.0%
GACACTGGCATGCCATAACT+TGG + chr4_1:54355763-54355782 None:intergenic 50.0%
GCATCCCAAGAACACATCAC+TGG - chr4_1:54355824-54355843 Msa0556270:intron 50.0%
! TGCCGTTGTCTTGATGATCC+TGG - chr4_1:54355859-54355878 Msa0556270:intron 50.0%
! GGCACAATATGACTTGCCAG+AGG - chr4_1:54356556-54356575 Msa0556270:intron 50.0%
AGGGAAGTCGGAAGCAACAA+CGG + chr4_1:54356945-54356964 None:intergenic 50.0%
GATGGAGCTGGATCTTGTGT+TGG - chr4_1:54357014-54357033 Msa0556270:intron 50.0%
TGCTTCCCACGCCCTATAAT+AGG + chr4_1:54357042-54357061 None:intergenic 50.0%
GCACTTGAGGGAGAGATTGT+TGG - chr4_1:54357059-54357078 Msa0556270:intron 50.0%
!! GGACTCTAGAGCACAAAAGG+GGG + chr4_1:54357171-54357190 None:intergenic 50.0%
AGTGATCAGTGAGGTTACCC+AGG - chr4_1:54357397-54357416 Msa0556270:intron 50.0%
! TATAGGTTGGGATGCCAACG+TGG - chr4_1:54357582-54357601 Msa0556270:CDS 50.0%
ATGCCAACGTGGAAAGACAG+AGG - chr4_1:54357593-54357612 Msa0556270:CDS 50.0%
GGAGCATAAGGTTGGGACAC+TGG + chr4_1:54355778-54355797 None:intergenic 55.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_1:54355815-54355834 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_1:54356568-54356587 Msa0556270:intron 55.0%
! CAGTCCATACAAGGTGCCTC+TGG + chr4_1:54356575-54356594 None:intergenic 55.0%
GGGAAGTCGGAAGCAACAAC+GGG + chr4_1:54356944-54356963 None:intergenic 55.0%
GTCGGGGAGTTTAGGGAAGT+CGG + chr4_1:54356957-54356976 None:intergenic 55.0%
!! ATCAGATCCCTGGTTCGGCT+TGG - chr4_1:54356984-54357003 Msa0556270:intron 55.0%
!! ATCCCTGGTTCGGCTTGGAA+GGG - chr4_1:54356989-54357008 Msa0556270:intron 55.0%
TGGCCTCTGTCTTTCCACGT+TGG + chr4_1:54357599-54357618 None:intergenic 55.0%
AACGTGGAAAGACAGAGGCC+AGG - chr4_1:54357598-54357617 Msa0556270:CDS 55.0%
GGAGCATAAGGTTGGGACAC+TGG + chr4_1:54355778-54355797 None:intergenic 55.0%
TCTTGGGATGCCCCTTGAAC+TGG + chr4_1:54355815-54355834 None:intergenic 55.0%
!! CTTGCCAGAGGCACCTTGTA+TGG - chr4_1:54356568-54356587 Msa0556270:intron 55.0%
! CAGTCCATACAAGGTGCCTC+TGG + chr4_1:54356575-54356594 None:intergenic 55.0%
GGGAAGTCGGAAGCAACAAC+GGG + chr4_1:54356944-54356963 None:intergenic 55.0%
GTCGGGGAGTTTAGGGAAGT+CGG + chr4_1:54356957-54356976 None:intergenic 55.0%
!! ATCAGATCCCTGGTTCGGCT+TGG - chr4_1:54356984-54357003 Msa0556270:intron 55.0%
!! ATCCCTGGTTCGGCTTGGAA+GGG - chr4_1:54356989-54357008 Msa0556270:intron 55.0%
TGGCCTCTGTCTTTCCACGT+TGG + chr4_1:54357599-54357618 None:intergenic 55.0%
AACGTGGAAAGACAGAGGCC+AGG - chr4_1:54357598-54357617 Msa0556270:CDS 55.0%
GACCTTGAGGGGGATGACCA+TGG + chr4_1:54355720-54355739 None:intergenic 60.0%
GGTCATCCCCCTCAAGGTCA+AGG - chr4_1:54355721-54355740 Msa0556270:intron 60.0%
TGTGGCGTCTCCCTCTCTTG+TGG - chr4_1:54356902-54356921 Msa0556270:intron 60.0%
GTGGCGTCTCCCTCTCTTGT+GGG - chr4_1:54356903-54356922 Msa0556270:intron 60.0%
TGGCGTCTCCCTCTCTTGTG+GGG - chr4_1:54356904-54356923 Msa0556270:intron 60.0%
TCTCCCTCTCTTGTGGGGCT+TGG - chr4_1:54356909-54356928 Msa0556270:intron 60.0%
GCTCCAAGCCCCACAAGAGA+GGG + chr4_1:54356915-54356934 None:intergenic 60.0%
TGCTCCAAGCCCCACAAGAG+AGG + chr4_1:54356916-54356935 None:intergenic 60.0%
!! GATCCCTGGTTCGGCTTGGA+AGG - chr4_1:54356988-54357007 Msa0556270:intron 60.0%
!! TCCCTGGTTCGGCTTGGAAG+GGG - chr4_1:54356990-54357009 Msa0556270:intron 60.0%
TCCCCTTCCAAGCCGAACCA+GGG + chr4_1:54356994-54357013 None:intergenic 60.0%
!! GTTCGGCTTGGAAGGGGAGA+TGG - chr4_1:54356996-54357015 Msa0556270:intron 60.0%
CTTGGAAGGGGAGATGGAGC+TGG - chr4_1:54357002-54357021 Msa0556270:intron 60.0%
!! TAGGGCGTGGGAAGCACTTG+AGG - chr4_1:54357046-54357065 Msa0556270:intron 60.0%
!! AGGGCGTGGGAAGCACTTGA+GGG - chr4_1:54357047-54357066 Msa0556270:intron 60.0%
ACAGAGGCCAGGAGTTGCAG+TGG - chr4_1:54357609-54357628 Msa0556270:CDS 60.0%
GACCTTGAGGGGGATGACCA+TGG + chr4_1:54355720-54355739 None:intergenic 60.0%
GGTCATCCCCCTCAAGGTCA+AGG - chr4_1:54355721-54355740 Msa0556270:intron 60.0%
TGTGGCGTCTCCCTCTCTTG+TGG - chr4_1:54356902-54356921 Msa0556270:intron 60.0%
GTGGCGTCTCCCTCTCTTGT+GGG - chr4_1:54356903-54356922 Msa0556270:intron 60.0%
TGGCGTCTCCCTCTCTTGTG+GGG - chr4_1:54356904-54356923 Msa0556270:intron 60.0%
TCTCCCTCTCTTGTGGGGCT+TGG - chr4_1:54356909-54356928 Msa0556270:intron 60.0%
GCTCCAAGCCCCACAAGAGA+GGG + chr4_1:54356915-54356934 None:intergenic 60.0%
TGCTCCAAGCCCCACAAGAG+AGG + chr4_1:54356916-54356935 None:intergenic 60.0%
!! GATCCCTGGTTCGGCTTGGA+AGG - chr4_1:54356988-54357007 Msa0556270:intron 60.0%
!! TCCCTGGTTCGGCTTGGAAG+GGG - chr4_1:54356990-54357009 Msa0556270:intron 60.0%
TCCCCTTCCAAGCCGAACCA+GGG + chr4_1:54356994-54357013 None:intergenic 60.0%
!! GTTCGGCTTGGAAGGGGAGA+TGG - chr4_1:54356996-54357015 Msa0556270:intron 60.0%
CTTGGAAGGGGAGATGGAGC+TGG - chr4_1:54357002-54357021 Msa0556270:intron 60.0%
!! TAGGGCGTGGGAAGCACTTG+AGG - chr4_1:54357046-54357065 Msa0556270:intron 60.0%
!! AGGGCGTGGGAAGCACTTGA+GGG - chr4_1:54357047-54357066 Msa0556270:intron 60.0%
ACAGAGGCCAGGAGTTGCAG+TGG - chr4_1:54357609-54357628 Msa0556270:CDS 60.0%
GGCCATGGTCATCCCCCTCA+AGG - chr4_1:54355715-54355734 Msa0556270:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_1:54356490-54356509 Msa0556270:intron 65.0%
CTCCCCTTCCAAGCCGAACC+AGG + chr4_1:54356995-54357014 None:intergenic 65.0%
!! GGTGGTGCCACTGCAACTCC+TGG + chr4_1:54357619-54357638 None:intergenic 65.0%
GGCCATGGTCATCCCCCTCA+AGG - chr4_1:54355715-54355734 Msa0556270:CDS 65.0%
! TGGGGCGCTACTGGCTGTGT+CGG - chr4_1:54356490-54356509 Msa0556270:intron 65.0%
CTCCCCTTCCAAGCCGAACC+AGG + chr4_1:54356995-54357014 None:intergenic 65.0%
!! GGTGGTGCCACTGCAACTCC+TGG + chr4_1:54357619-54357638 None:intergenic 65.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_1:54356491-54356510 Msa0556270:intron 70.0%
! GGGGCGCTACTGGCTGTGTC+GGG - chr4_1:54356491-54356510 Msa0556270:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54355661 54357663 54355661 ID=Msa0556270;Name=Msa0556270
chr4_1 mRNA 54355661 54357663 54355661 ID=Msa0556270-mRNA-1;Parent=Msa0556270;Name=Msa0556270-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0.33|3|0|167
chr4_1 exon 54357429 54357663 54357429 ID=Msa0556270-mRNA-1:exon:16001;Parent=Msa0556270-mRNA-1
chr4_1 exon 54356668 54356859 54356668 ID=Msa0556270-mRNA-1:exon:16000;Parent=Msa0556270-mRNA-1
chr4_1 exon 54355661 54355737 54355661 ID=Msa0556270-mRNA-1:exon:15999;Parent=Msa0556270-mRNA-1
chr4_1 CDS 54357429 54357663 54357429 ID=Msa0556270-mRNA-1:cds;Parent=Msa0556270-mRNA-1
chr4_1 CDS 54356668 54356859 54356668 ID=Msa0556270-mRNA-1:cds;Parent=Msa0556270-mRNA-1
chr4_1 CDS 54355661 54355737 54355661 ID=Msa0556270-mRNA-1:cds;Parent=Msa0556270-mRNA-1
Gene Sequence

>Msa0556270

ATGTATCCTCCCGTAAGTGAAACAGATCATGTATATGCAGATCATAGTAGTCATGGCCATGGTCATCCCCCTCAAGGTCAAGGCTATGTCCTACAAATGCCAAGTTATGGCATGCCAGTGTCCCAACCTTATGCTCCTCCATATATCAGCACCAGTTCAAGGGGCATCCCAAGAACACATCACTGGTCAACTGGTCTTTGCCGTTGTCTTGATGATCCTGGAATCTGTAAGGATCCTTGCACTTGTGATGGAACAATTTATGGGGCGCTACTGGCTGTGTCGGGACTTGCATGTTTATATTCATGTTATTATCGCTCAAAACTGAGGGCACAATATGACTTGCCAGAGGCACCTTGTATGGACTGCTTAGTTCATTTTTGTTGTGAAACTTGTGCTCTTTGTCAGGAATATAGAGAACTCAAAAACCGTTGGGATGCCAACGTGGAAAGACAGAGGCCAGGAGTTGCAGTGGCACCACCAATGATTTCACCTATGACAAGATAA

Protein sequence

>Msa0556270

MYPPVSETDHVYADHSSHGHGHPPQGQGYVLQMPSYGMPVSQPYAPPYISTSSRGIPRTHHWSTGLCRCLDDPGICKDPCTCDGTIYGALLAVSGLACLYSCYYRSKLRAQYDLPEAPCMDCLVHFCCETCALCQEYRELKNRWDANVERQRPGVAVAPPMISPMTR*