Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145640 | XP_024633305.1 | 96.552 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145640 | sp|Q9SYY4|ELO3L_ARATH | 60.215 | 279 | 108 | 3 | 1 | 276 | 1 | 279 | 2.35e-116 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145640 | A0A396JM73 | 86.897 | 290 | 9 | 1 | 1 | 290 | 1 | 261 | 3.06e-178 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054610 | Msa0145640 | 0.998888 | 1.489171e-280 | -8.615850e-47 |
| Msa0101380 | Msa0145640 | 0.919350 | 5.022626e-87 | -8.615850e-47 |
| Msa0143590 | Msa0145640 | 0.803033 | 4.228755e-49 | -8.615850e-47 |
| Msa0145640 | Msa0345980 | 0.816637 | 4.991050e-52 | -8.615850e-47 |
| Msa0145640 | Msa0393100 | 0.816446 | 5.507795e-52 | -8.615850e-47 |
| Msa0145640 | Msa0488580 | 0.814537 | 1.464637e-51 | -8.615850e-47 |
| Msa0145640 | Msa0556270 | 0.802488 | 5.477776e-49 | -8.615850e-47 |
| Msa0145640 | Msa0704560 | 0.804795 | 1.819880e-49 | -8.615850e-47 |
| Msa0145640 | Msa0733560 | 0.804373 | 2.228126e-49 | -8.615850e-47 |
| Msa0145640 | Msa0881510 | 0.825545 | 4.421976e-54 | -8.615850e-47 |
| Msa0145640 | Msa1013190 | 0.806516 | 7.918648e-50 | -8.615850e-47 |
| Msa0145640 | Msa1157110 | 0.801630 | 8.223148e-49 | -8.615850e-47 |
| Msa0145640 | Msa1223990 | 0.800973 | 1.120949e-48 | -8.615850e-47 |
| Msa0145640 | Msa1263110 | 0.810366 | 1.194647e-50 | -8.615850e-47 |
| Msa0145640 | Msa1303550 | 0.814581 | 1.432406e-51 | -8.615850e-47 |
| Msa0145640 | Msa1419320 | 0.912782 | 1.312268e-83 | -8.615850e-47 |
| Msa0145640 | Msa1427000 | 0.810978 | 8.808917e-51 | -8.615850e-47 |
| Msa0145640 | Msa1439780 | 0.805925 | 1.054735e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145640 | MtrunA17_Chr1g0154571 | 86.897 | 290 | 9 | 1 | 1 | 290 | 1 | 261 | 0.0 | 501 |
| Msa0145640 | MtrunA17_Chr3g0141331 | 68.085 | 282 | 88 | 1 | 7 | 288 | 13 | 292 | 1.52e-137 | 390 |
| Msa0145640 | MtrunA17_Chr5g0403531 | 57.801 | 282 | 117 | 2 | 3 | 283 | 5 | 285 | 8.21e-111 | 322 |
| Msa0145640 | MtrunA17_Chr8g0373641 | 58.824 | 272 | 108 | 3 | 8 | 276 | 15 | 285 | 7.92e-106 | 310 |
| Msa0145640 | MtrunA17_Chr7g0273031 | 31.786 | 280 | 169 | 6 | 9 | 280 | 9 | 274 | 4.42e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145640 | AT4G36830.1 | 60.215 | 279 | 108 | 3 | 1 | 276 | 1 | 279 | 2.39e-117 | 339 |
| Msa0145640 | AT1G75000.1 | 61.511 | 278 | 100 | 3 | 8 | 278 | 3 | 280 | 3.11e-112 | 325 |
| Msa0145640 | AT4G36830.2 | 61.628 | 258 | 96 | 3 | 1 | 255 | 1 | 258 | 1.50e-110 | 322 |
| Msa0145640 | AT3G06470.1 | 28.723 | 282 | 181 | 5 | 7 | 278 | 6 | 277 | 1.91e-34 | 126 |
| Msa0145640 | AT3G06460.1 | 30.108 | 279 | 175 | 5 | 7 | 280 | 6 | 269 | 4.55e-34 | 125 |
Find 65 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTGGTTTGTCATTT+TGG | 0.099853 | 1_4:-5343842 | Msa0145640:CDS |
| TTGGTTTATTGTTTGGTTTA+TGG | 0.193155 | 1_4:-5343944 | Msa0145640:CDS |
| TGGTTTATGGCTATAGATTT+TGG | 0.209259 | 1_4:-5343931 | Msa0145640:CDS |
| CTCGACTTTGGTTTATTGTT+TGG | 0.257456 | 1_4:-5343951 | Msa0145640:CDS |
| AGGTGCTATTGTTCTTCTTT+TGG | 0.268883 | 1_4:+5343699 | None:intergenic |
| ACGCAGCCAGGCTGTCCGTC+TGG | 0.310829 | 1_4:-5344335 | Msa0145640:CDS |
| TAGACCATCCATCCATAGTT+TGG | 0.325917 | 1_4:-5344471 | Msa0145640:CDS |
| TGTCCGTCTGGGGCCTATTC+CGG | 0.361610 | 1_4:-5344323 | Msa0145640:CDS |
| CGCAGCCAGGCTGTCCGTCT+GGG | 0.382356 | 1_4:-5344334 | Msa0145640:CDS |
| GGTGTAATGGAATTGGAGCT+TGG | 0.382997 | 1_4:-5343790 | Msa0145640:CDS |
| ACTCCATCGGAACCAAACTA+TGG | 0.389345 | 1_4:+5344459 | None:intergenic |
| AGAGGTGGGTGTAATGGAAT+TGG | 0.394775 | 1_4:-5343797 | Msa0145640:CDS |
| GGCTGCGTTTGAAGATCTTA+AGG | 0.395067 | 1_4:+5344350 | None:intergenic |
| ATCATGAGGTAGTGGATTGC+CGG | 0.403218 | 1_4:+5344304 | None:intergenic |
| TGACACAGAGCCTAAAATAT+TGG | 0.420282 | 1_4:-5344498 | Msa0145640:CDS |
| GTGTAATGGAATTGGAGCTT+GGG | 0.420847 | 1_4:-5343789 | Msa0145640:CDS |
| TAGGCCCCAGACGGACAGCC+TGG | 0.424087 | 1_4:+5344329 | None:intergenic |
| CCACTTGGTATGCGTCCATC+TGG | 0.425938 | 1_4:-5344160 | Msa0145640:CDS |
| TTGATCAGATGTACTACTAT+AGG | 0.432647 | 1_4:+5343679 | None:intergenic |
| AGGTAGTGGATTGCCGGAAT+AGG | 0.440809 | 1_4:+5344310 | None:intergenic |
| AAACAAAGGAACCATTCAAA+AGG | 0.452719 | 1_4:+5344184 | None:intergenic |
| GCCATGTGGCGCCCCATGAT+TGG | 0.461847 | 1_4:+5344431 | None:intergenic |
| GATGGAGTCCGAGCCAATCA+TGG | 0.472942 | 1_4:-5344444 | Msa0145640:CDS |
| AAAATGAGAGTTTCCGTTGA+CGG | 0.478008 | 1_4:+5344062 | None:intergenic |
| AAAAGAACTGATCAAGAGAA+TGG | 0.488684 | 1_4:+5344021 | None:intergenic |
| TGGTTCCTTTGTTTCCCACT+TGG | 0.489824 | 1_4:-5344175 | Msa0145640:CDS |
| AACAAAGGAACCATTCAAAA+GGG | 0.499822 | 1_4:+5344185 | None:intergenic |
| ATGGAGTCCGAGCCAATCAT+GGG | 0.507645 | 1_4:-5344443 | Msa0145640:CDS |
| CATCCATAGTTTGGTTCCGA+TGG | 0.512158 | 1_4:-5344462 | Msa0145640:CDS |
| TAAGATCTTCAAACGCAGCC+AGG | 0.516653 | 1_4:-5344347 | Msa0145640:CDS |
| GGAGTAGCCACCGTGTGTCA+TGG | 0.523135 | 1_4:+5344224 | None:intergenic |
| GTGGCGCCCCATGATTGGCT+CGG | 0.534503 | 1_4:+5344436 | None:intergenic |
| TTGGCAATGAACATTGACAT+AGG | 0.540007 | 1_4:+5343718 | None:intergenic |
| TCTTTGTCATTCTCCGTCAA+CGG | 0.544484 | 1_4:-5344075 | Msa0145640:CDS |
| ATGACACACGGTGGCTACTC+CGG | 0.545021 | 1_4:-5344222 | Msa0145640:CDS |
| CATCGGAACCAAACTATGGA+TGG | 0.554197 | 1_4:+5344463 | None:intergenic |
| TTAGTGACATCATGAGGTAG+TGG | 0.557036 | 1_4:+5344296 | None:intergenic |
| GCGATGGCTATGACGAGGAA+TGG | 0.557115 | 1_4:+5344409 | None:intergenic |
| GCCAATCATGGGGCGCCACA+TGG | 0.558381 | 1_4:-5344432 | Msa0145640:CDS |
| ATGATTGGCTCGGACTCCAT+CGG | 0.572372 | 1_4:+5344446 | None:intergenic |
| GCAGCCAGGCTGTCCGTCTG+GGG | 0.572875 | 1_4:-5344333 | Msa0145640:CDS |
| AGCTGTTATATAAGCGGCGA+TGG | 0.577723 | 1_4:+5344393 | None:intergenic |
| CAGAAGAAAACACGACCAGA+TGG | 0.581311 | 1_4:+5344145 | None:intergenic |
| GTCATGGAGTTCTGCAGCCG+CGG | 0.588480 | 1_4:+5344240 | None:intergenic |
| TGAAGATCTTAAGGATGATG+TGG | 0.603265 | 1_4:+5344359 | None:intergenic |
| GCATACCAAGTGGGAAACAA+AGG | 0.605927 | 1_4:+5344170 | None:intergenic |
| TTGCCGGAATAGGCCCCAGA+CGG | 0.613062 | 1_4:+5344320 | None:intergenic |
| TTGACGGAGAATGACAAAGA+AGG | 0.617040 | 1_4:+5344078 | None:intergenic |
| GGAACCAAACTATGGATGGA+TGG | 0.619142 | 1_4:+5344467 | None:intergenic |
| AGATCTTAAGGATGATGTGG+AGG | 0.621098 | 1_4:+5344362 | None:intergenic |
| AGCCGCGGAGAATAGCATGC+CGG | 0.623890 | 1_4:+5344255 | None:intergenic |
| GAGTGCAGCTGTTATATAAG+CGG | 0.625737 | 1_4:+5344387 | None:intergenic |
| CTGCAGAACTCCATGACACA+CGG | 0.630059 | 1_4:-5344234 | Msa0145640:CDS |
| CATGCCGGAGAAAATTGTGA+TGG | 0.634231 | 1_4:+5344270 | None:intergenic |
| CCAGATGGACGCATACCAAG+TGG | 0.648526 | 1_4:+5344160 | None:intergenic |
| ACAAAGGAACCATTCAAAAG+GGG | 0.655501 | 1_4:+5344186 | None:intergenic |
| ACAAATGAAGAAACCTTGAG+AGG | 0.668969 | 1_4:+5344107 | None:intergenic |
| TGGAGATTAGTGACATCATG+AGG | 0.675612 | 1_4:+5344290 | None:intergenic |
| TGGAGTCCGAGCCAATCATG+GGG | 0.680027 | 1_4:-5344442 | Msa0145640:CDS |
| CAGATGGACGCATACCAAGT+GGG | 0.681279 | 1_4:+5344161 | None:intergenic |
| CTCCGGCATGCTATTCTCCG+CGG | 0.683685 | 1_4:-5344257 | Msa0145640:CDS |
| AAGCGGCGATGGCTATGACG+AGG | 0.706832 | 1_4:+5344404 | None:intergenic |
| GATCTTAAGGATGATGTGGA+GGG | 0.711812 | 1_4:+5344363 | None:intergenic |
| TATGACGAGGAATGGCCATG+TGG | 0.744207 | 1_4:+5344417 | None:intergenic |
| CAGAACTCCATGACACACGG+TGG | 0.774706 | 1_4:-5344231 | Msa0145640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGATTTTGGATTGAAAT+TGG | - | chr1_4:5344252-5344271 | Msa0145640:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | - | chr1_4:5344253-5344272 | Msa0145640:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | + | chr1_4:5344282-5344301 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | - | chr1_4:5344306-5344325 | Msa0145640:CDS | 20.0% |
| !!! | TATAGATTTTGGATTGAAAT+TGG | - | chr1_4:5344252-5344271 | Msa0145640:CDS | 20.0% |
| !!! | ATAGATTTTGGATTGAAATT+GGG | - | chr1_4:5344253-5344272 | Msa0145640:CDS | 20.0% |
| !! | GTGAAATAAAAATTCTTACT+TGG | + | chr1_4:5344282-5344301 | None:intergenic | 20.0% |
| !!! | AATTGTCAAATGATTTTGTT+GGG | - | chr1_4:5344306-5344325 | Msa0145640:CDS | 20.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | + | chr1_4:5343687-5343706 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | - | chr1_4:5344228-5344247 | Msa0145640:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | - | chr1_4:5344305-5344324 | Msa0145640:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | - | chr1_4:5344330-5344349 | Msa0145640:CDS | 25.0% |
| !! | GGTCTATTAACCAATATTTT+AGG | + | chr1_4:5343687-5343706 | None:intergenic | 25.0% |
| !! | TTGGTTTATTGTTTGGTTTA+TGG | - | chr1_4:5344228-5344247 | Msa0145640:CDS | 25.0% |
| !! | GAATTGTCAAATGATTTTGT+TGG | - | chr1_4:5344305-5344324 | Msa0145640:CDS | 25.0% |
| !!! | TGTAATTTGGTTTGTCATTT+TGG | - | chr1_4:5344330-5344349 | Msa0145640:CDS | 25.0% |
| AACAAAGGAACCATTCAAAA+GGG | + | chr1_4:5343990-5344009 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | + | chr1_4:5343991-5344010 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | - | chr1_4:5344052-5344071 | Msa0145640:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | + | chr1_4:5344154-5344173 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | - | chr1_4:5344157-5344176 | Msa0145640:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | - | chr1_4:5344182-5344201 | Msa0145640:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | - | chr1_4:5344241-5344260 | Msa0145640:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | - | chr1_4:5344317-5344336 | Msa0145640:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | + | chr1_4:5344496-5344515 | None:intergenic | 30.0% | |
| AACAAAGGAACCATTCAAAA+GGG | + | chr1_4:5343990-5344009 | None:intergenic | 30.0% | |
| AAACAAAGGAACCATTCAAA+AGG | + | chr1_4:5343991-5344010 | None:intergenic | 30.0% | |
| ! | CTTATATTTTCTACCTCTCA+AGG | - | chr1_4:5344052-5344071 | Msa0145640:CDS | 30.0% |
| AAAAGAACTGATCAAGAGAA+TGG | + | chr1_4:5344154-5344173 | None:intergenic | 30.0% | |
| ! | TCTTGATCAGTTCTTTTCTA+TGG | - | chr1_4:5344157-5344176 | Msa0145640:CDS | 30.0% |
| ! | TGAATTTTCACAGTCTTTTC+AGG | - | chr1_4:5344182-5344201 | Msa0145640:CDS | 30.0% |
| ! | TGGTTTATGGCTATAGATTT+TGG | - | chr1_4:5344241-5344260 | Msa0145640:CDS | 30.0% |
| !! | GATTTTGTTGGGTTGTAATT+TGG | - | chr1_4:5344317-5344336 | Msa0145640:CDS | 30.0% |
| TTGATCAGATGTACTACTAT+AGG | + | chr1_4:5344496-5344515 | None:intergenic | 30.0% | |
| TGACACAGAGCCTAAAATAT+TGG | - | chr1_4:5343674-5343693 | Msa0145640:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | + | chr1_4:5343816-5343835 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | - | chr1_4:5343898-5343917 | Msa0145640:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | - | chr1_4:5343977-5343996 | Msa0145640:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | + | chr1_4:5343989-5344008 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | + | chr1_4:5344068-5344087 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | + | chr1_4:5344113-5344132 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | - | chr1_4:5344115-5344134 | Msa0145640:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | - | chr1_4:5344221-5344240 | Msa0145640:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | - | chr1_4:5344340-5344359 | Msa0145640:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | + | chr1_4:5344443-5344462 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | + | chr1_4:5344457-5344476 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | + | chr1_4:5344476-5344495 | None:intergenic | 35.0% |
| TGACACAGAGCCTAAAATAT+TGG | - | chr1_4:5343674-5343693 | Msa0145640:CDS | 35.0% | |
| TGAAGATCTTAAGGATGATG+TGG | + | chr1_4:5343816-5343835 | None:intergenic | 35.0% | |
| ! | ATCTCCATCACAATTTTCTC+CGG | - | chr1_4:5343898-5343917 | Msa0145640:CDS | 35.0% |
| ! | CTAAAACTACCCCTTTTGAA+TGG | - | chr1_4:5343977-5343996 | Msa0145640:CDS | 35.0% |
| ACAAAGGAACCATTCAAAAG+GGG | + | chr1_4:5343989-5344008 | None:intergenic | 35.0% | |
| ACAAATGAAGAAACCTTGAG+AGG | + | chr1_4:5344068-5344087 | None:intergenic | 35.0% | |
| AAAATGAGAGTTTCCGTTGA+CGG | + | chr1_4:5344113-5344132 | None:intergenic | 35.0% | |
| !! | AACGGAAACTCTCATTTTTC+AGG | - | chr1_4:5344115-5344134 | Msa0145640:CDS | 35.0% |
| ! | CTCGACTTTGGTTTATTGTT+TGG | - | chr1_4:5344221-5344240 | Msa0145640:CDS | 35.0% |
| !!! | TTTGTCATTTTGGTGTGCTT+TGG | - | chr1_4:5344340-5344359 | Msa0145640:CDS | 35.0% |
| TGACATAGGACTTCAAAAAG+AGG | + | chr1_4:5344443-5344462 | None:intergenic | 35.0% | |
| TTGGCAATGAACATTGACAT+AGG | + | chr1_4:5344457-5344476 | None:intergenic | 35.0% | |
| !!! | AGGTGCTATTGTTCTTCTTT+TGG | + | chr1_4:5344476-5344495 | None:intergenic | 35.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | + | chr1_4:5343672-5343691 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | - | chr1_4:5343701-5343720 | Msa0145640:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | + | chr1_4:5343788-5343807 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | + | chr1_4:5343812-5343831 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | + | chr1_4:5343813-5343832 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | + | chr1_4:5343879-5343898 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | + | chr1_4:5343885-5343904 | None:intergenic | 40.0% | |
| !!! | AAGGGGTAGTTTTAGTTCTC+CGG | + | chr1_4:5343972-5343991 | None:intergenic | 40.0% |
| TTGACGGAGAATGACAAAGA+AGG | + | chr1_4:5344097-5344116 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | - | chr1_4:5344097-5344116 | Msa0145640:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | - | chr1_4:5344189-5344208 | Msa0145640:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | - | chr1_4:5344190-5344209 | Msa0145640:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | - | chr1_4:5344352-5344371 | Msa0145640:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | - | chr1_4:5344357-5344376 | Msa0145640:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | - | chr1_4:5344383-5344402 | Msa0145640:CDS | 40.0% |
| ! | ATTTTAGGCTCTGTGTCAGT+TGG | + | chr1_4:5343672-5343691 | None:intergenic | 40.0% |
| TAGACCATCCATCCATAGTT+TGG | - | chr1_4:5343701-5343720 | Msa0145640:CDS | 40.0% | |
| GAGTGCAGCTGTTATATAAG+CGG | + | chr1_4:5343788-5343807 | None:intergenic | 40.0% | |
| GATCTTAAGGATGATGTGGA+GGG | + | chr1_4:5343812-5343831 | None:intergenic | 40.0% | |
| AGATCTTAAGGATGATGTGG+AGG | + | chr1_4:5343813-5343832 | None:intergenic | 40.0% | |
| TTAGTGACATCATGAGGTAG+TGG | + | chr1_4:5343879-5343898 | None:intergenic | 40.0% | |
| TGGAGATTAGTGACATCATG+AGG | + | chr1_4:5343885-5343904 | None:intergenic | 40.0% | |
| !!! | AAGGGGTAGTTTTAGTTCTC+CGG | + | chr1_4:5343972-5343991 | None:intergenic | 40.0% |
| TTGACGGAGAATGACAAAGA+AGG | + | chr1_4:5344097-5344116 | None:intergenic | 40.0% | |
| TCTTTGTCATTCTCCGTCAA+CGG | - | chr1_4:5344097-5344116 | Msa0145640:CDS | 40.0% | |
| !!! | TCACAGTCTTTTCAGGTTCT+TGG | - | chr1_4:5344189-5344208 | Msa0145640:CDS | 40.0% |
| !!! | CACAGTCTTTTCAGGTTCTT+GGG | - | chr1_4:5344190-5344209 | Msa0145640:CDS | 40.0% |
| ! | GTGTGCTTTGGTTGCATTTT+TGG | - | chr1_4:5344352-5344371 | Msa0145640:CDS | 40.0% |
| !! | CTTTGGTTGCATTTTTGGAG+AGG | - | chr1_4:5344357-5344376 | Msa0145640:CDS | 40.0% |
| ! | GTGTAATGGAATTGGAGCTT+GGG | - | chr1_4:5344383-5344402 | Msa0145640:CDS | 40.0% |
| GGAACCAAACTATGGATGGA+TGG | + | chr1_4:5343708-5343727 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | + | chr1_4:5343712-5343731 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | - | chr1_4:5343710-5343729 | Msa0145640:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | + | chr1_4:5343716-5343735 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | + | chr1_4:5343782-5343801 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | + | chr1_4:5343825-5343844 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | - | chr1_4:5343825-5343844 | Msa0145640:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | + | chr1_4:5343871-5343890 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | + | chr1_4:5343905-5343924 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | - | chr1_4:5343997-5344016 | Msa0145640:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | + | chr1_4:5344005-5344024 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | + | chr1_4:5344030-5344049 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | - | chr1_4:5344028-5344047 | Msa0145640:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | - | chr1_4:5344209-5344228 | Msa0145640:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | - | chr1_4:5344360-5344379 | Msa0145640:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | - | chr1_4:5344361-5344380 | Msa0145640:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | - | chr1_4:5344369-5344388 | Msa0145640:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | - | chr1_4:5344375-5344394 | Msa0145640:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | - | chr1_4:5344382-5344401 | Msa0145640:CDS | 45.0% |
| GGAACCAAACTATGGATGGA+TGG | + | chr1_4:5343708-5343727 | None:intergenic | 45.0% | |
| CATCGGAACCAAACTATGGA+TGG | + | chr1_4:5343712-5343731 | None:intergenic | 45.0% | |
| ! | CATCCATAGTTTGGTTCCGA+TGG | - | chr1_4:5343710-5343729 | Msa0145640:CDS | 45.0% |
| ACTCCATCGGAACCAAACTA+TGG | + | chr1_4:5343716-5343735 | None:intergenic | 45.0% | |
| AGCTGTTATATAAGCGGCGA+TGG | + | chr1_4:5343782-5343801 | None:intergenic | 45.0% | |
| GGCTGCGTTTGAAGATCTTA+AGG | + | chr1_4:5343825-5343844 | None:intergenic | 45.0% | |
| TAAGATCTTCAAACGCAGCC+AGG | - | chr1_4:5343825-5343844 | Msa0145640:CDS | 45.0% | |
| !! | ATCATGAGGTAGTGGATTGC+CGG | + | chr1_4:5343871-5343890 | None:intergenic | 45.0% |
| CATGCCGGAGAAAATTGTGA+TGG | + | chr1_4:5343905-5343924 | None:intergenic | 45.0% | |
| ! | TGGTTCCTTTGTTTCCCACT+TGG | - | chr1_4:5343997-5344016 | Msa0145640:CDS | 45.0% |
| GCATACCAAGTGGGAAACAA+AGG | + | chr1_4:5344005-5344024 | None:intergenic | 45.0% | |
| CAGAAGAAAACACGACCAGA+TGG | + | chr1_4:5344030-5344049 | None:intergenic | 45.0% | |
| ! | CATCTGGTCGTGTTTTCTTC+TGG | - | chr1_4:5344028-5344047 | Msa0145640:CDS | 45.0% |
| ! | TGGGATTTTGCTCTCGACTT+TGG | - | chr1_4:5344209-5344228 | Msa0145640:CDS | 45.0% |
| !! | TGGTTGCATTTTTGGAGAGG+TGG | - | chr1_4:5344360-5344379 | Msa0145640:CDS | 45.0% |
| !! | GGTTGCATTTTTGGAGAGGT+GGG | - | chr1_4:5344361-5344380 | Msa0145640:CDS | 45.0% |
| !! | TTTTGGAGAGGTGGGTGTAA+TGG | - | chr1_4:5344369-5344388 | Msa0145640:CDS | 45.0% |
| ! | AGAGGTGGGTGTAATGGAAT+TGG | - | chr1_4:5344375-5344394 | Msa0145640:CDS | 45.0% |
| ! | GGTGTAATGGAATTGGAGCT+TGG | - | chr1_4:5344382-5344401 | Msa0145640:CDS | 45.0% |
| !! | ATGATTGGCTCGGACTCCAT+CGG | + | chr1_4:5343729-5343748 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | - | chr1_4:5343729-5343748 | Msa0145640:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | + | chr1_4:5343758-5343777 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | + | chr1_4:5343865-5343884 | None:intergenic | 50.0% |
| CTGCAGAACTCCATGACACA+CGG | - | chr1_4:5343938-5343957 | Msa0145640:CDS | 50.0% | |
| CAGATGGACGCATACCAAGT+GGG | + | chr1_4:5344014-5344033 | None:intergenic | 50.0% | |
| !! | ATGATTGGCTCGGACTCCAT+CGG | + | chr1_4:5343729-5343748 | None:intergenic | 50.0% |
| ATGGAGTCCGAGCCAATCAT+GGG | - | chr1_4:5343729-5343748 | Msa0145640:CDS | 50.0% | |
| TATGACGAGGAATGGCCATG+TGG | + | chr1_4:5343758-5343777 | None:intergenic | 50.0% | |
| !! | AGGTAGTGGATTGCCGGAAT+AGG | + | chr1_4:5343865-5343884 | None:intergenic | 50.0% |
| CTGCAGAACTCCATGACACA+CGG | - | chr1_4:5343938-5343957 | Msa0145640:CDS | 50.0% | |
| CAGATGGACGCATACCAAGT+GGG | + | chr1_4:5344014-5344033 | None:intergenic | 50.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | - | chr1_4:5343728-5343747 | Msa0145640:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | - | chr1_4:5343730-5343749 | Msa0145640:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | + | chr1_4:5343766-5343785 | None:intergenic | 55.0% | |
| CAGAACTCCATGACACACGG+TGG | - | chr1_4:5343941-5343960 | Msa0145640:CDS | 55.0% | |
| ATGACACACGGTGGCTACTC+CGG | - | chr1_4:5343950-5343969 | Msa0145640:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | + | chr1_4:5344015-5344034 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | - | chr1_4:5344012-5344031 | Msa0145640:CDS | 55.0% | |
| GATGGAGTCCGAGCCAATCA+TGG | - | chr1_4:5343728-5343747 | Msa0145640:CDS | 55.0% | |
| TGGAGTCCGAGCCAATCATG+GGG | - | chr1_4:5343730-5343749 | Msa0145640:CDS | 55.0% | |
| GCGATGGCTATGACGAGGAA+TGG | + | chr1_4:5343766-5343785 | None:intergenic | 55.0% | |
| CAGAACTCCATGACACACGG+TGG | - | chr1_4:5343941-5343960 | Msa0145640:CDS | 55.0% | |
| ATGACACACGGTGGCTACTC+CGG | - | chr1_4:5343950-5343969 | Msa0145640:CDS | 55.0% | |
| CCAGATGGACGCATACCAAG+TGG | + | chr1_4:5344015-5344034 | None:intergenic | 55.0% | |
| CCACTTGGTATGCGTCCATC+TGG | - | chr1_4:5344012-5344031 | Msa0145640:CDS | 55.0% | |
| AAGCGGCGATGGCTATGACG+AGG | + | chr1_4:5343771-5343790 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | - | chr1_4:5343849-5343868 | Msa0145640:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | + | chr1_4:5343855-5343874 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | - | chr1_4:5343915-5343934 | Msa0145640:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | + | chr1_4:5343920-5343939 | None:intergenic | 60.0% | |
| GTCATGGAGTTCTGCAGCCG+CGG | + | chr1_4:5343935-5343954 | None:intergenic | 60.0% | |
| GGAGTAGCCACCGTGTGTCA+TGG | + | chr1_4:5343951-5343970 | None:intergenic | 60.0% | |
| AAGCGGCGATGGCTATGACG+AGG | + | chr1_4:5343771-5343790 | None:intergenic | 60.0% | |
| ! | TGTCCGTCTGGGGCCTATTC+CGG | - | chr1_4:5343849-5343868 | Msa0145640:CDS | 60.0% |
| TTGCCGGAATAGGCCCCAGA+CGG | + | chr1_4:5343855-5343874 | None:intergenic | 60.0% | |
| CTCCGGCATGCTATTCTCCG+CGG | - | chr1_4:5343915-5343934 | Msa0145640:CDS | 60.0% | |
| AGCCGCGGAGAATAGCATGC+CGG | + | chr1_4:5343920-5343939 | None:intergenic | 60.0% | |
| GTCATGGAGTTCTGCAGCCG+CGG | + | chr1_4:5343935-5343954 | None:intergenic | 60.0% | |
| GGAGTAGCCACCGTGTGTCA+TGG | + | chr1_4:5343951-5343970 | None:intergenic | 60.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | + | chr1_4:5343739-5343758 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | - | chr1_4:5343740-5343759 | Msa0145640:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | + | chr1_4:5343744-5343763 | None:intergenic | 65.0% | |
| ! | GTGGCGCCCCATGATTGGCT+CGG | + | chr1_4:5343739-5343758 | None:intergenic | 65.0% |
| ! | GCCAATCATGGGGCGCCACA+TGG | - | chr1_4:5343740-5343759 | Msa0145640:CDS | 65.0% |
| GCCATGTGGCGCCCCATGAT+TGG | + | chr1_4:5343744-5343763 | None:intergenic | 65.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | - | chr1_4:5343837-5343856 | Msa0145640:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | - | chr1_4:5343838-5343857 | Msa0145640:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | - | chr1_4:5343839-5343858 | Msa0145640:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | + | chr1_4:5343846-5343865 | None:intergenic | 70.0% | |
| ACGCAGCCAGGCTGTCCGTC+TGG | - | chr1_4:5343837-5343856 | Msa0145640:CDS | 70.0% | |
| CGCAGCCAGGCTGTCCGTCT+GGG | - | chr1_4:5343838-5343857 | Msa0145640:CDS | 70.0% | |
| GCAGCCAGGCTGTCCGTCTG+GGG | - | chr1_4:5343839-5343858 | Msa0145640:CDS | 70.0% | |
| TAGGCCCCAGACGGACAGCC+TGG | + | chr1_4:5343846-5343865 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5343661 | 5344533 | 5343661 | ID=Msa0145640;Name=Msa0145640 |
| chr1_4 | mRNA | 5343661 | 5344533 | 5343661 | ID=Msa0145640-mRNA-1;Parent=Msa0145640;Name=Msa0145640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|290 |
| chr1_4 | exon | 5343661 | 5344533 | 5343661 | ID=Msa0145640-mRNA-1:exon:2217;Parent=Msa0145640-mRNA-1 |
| chr1_4 | CDS | 5343661 | 5344533 | 5343661 | ID=Msa0145640-mRNA-1:cds;Parent=Msa0145640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
