Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069520 | YP_009827621.1 | 99.457 | 184 | 1 | 0 | 118 | 301 | 11 | 194 | 7.94e-126 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069520 | sp|Q31708|RT04_ARATH | 82.162 | 185 | 32 | 1 | 118 | 301 | 27 | 211 | 2.00e-89 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069520 | A0A6H0QY45 | 99.457 | 184 | 1 | 0 | 118 | 301 | 11 | 194 | 3.79e-126 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069510 | Msa0069520 | 0.940592 | 1.791676e-100 | -8.615850e-47 |
| Msa0069520 | Msa0697990 | 0.801457 | 8.923854e-49 | -8.615850e-47 |
| Msa0069520 | Msa0908850 | 0.825345 | 4.931018e-54 | -8.615850e-47 |
| Msa0069520 | Msa0919980 | 0.952876 | 9.386348e-111 | -8.615850e-47 |
| Msa0069520 | Msa0919990 | 0.904550 | 1.091820e-79 | -8.615850e-47 |
| Msa0069520 | Msa0920060 | 0.821438 | 4.037049e-53 | -8.615850e-47 |
| Msa0069520 | Msa0944920 | 0.805414 | 1.350743e-49 | -8.615850e-47 |
| Msa0069520 | Msa0983190 | 0.811658 | 6.271342e-51 | -8.615850e-47 |
| Msa0069520 | Msa0983300 | 0.830716 | 2.510807e-55 | -8.615850e-47 |
| Msa0069520 | Msa0983360 | 0.930936 | 7.904939e-94 | -8.615850e-47 |
| Msa0069520 | Msa0983370 | 0.889863 | 1.654858e-73 | -8.615850e-47 |
| Msa0069520 | Msa0983460 | 0.828443 | 8.966591e-55 | -8.615850e-47 |
| Msa0069520 | Msa0983520 | 0.803942 | 2.739206e-49 | -8.615850e-47 |
| Msa0069520 | Msa1391950 | 0.926744 | 3.076722e-91 | -8.615850e-47 |
| Msa0069520 | Msa1391960 | 0.932991 | 3.700332e-95 | -8.615850e-47 |
| Msa0069520 | Msa1392030 | 0.833500 | 5.146236e-56 | -8.615850e-47 |
| Msa0069520 | Msa1392120 | 0.824281 | 8.788521e-54 | -8.615850e-47 |
| Msa0069520 | Msa1453850 | 0.873492 | 1.410290e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069520 | MtrunA17_MTg0491671 | 99.457 | 184 | 1 | 0 | 118 | 301 | 11 | 194 | 1.11e-129 | 373 |
| Msa0069520 | MtrunA17_MTg0491661 | 100.000 | 118 | 0 | 0 | 1 | 118 | 1 | 118 | 1.43e-81 | 242 |
| Msa0069520 | MtrunA17_Chr7g0234981 | 65.789 | 76 | 26 | 0 | 43 | 118 | 13 | 88 | 1.38e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069520 | ATMG00290.1 | 85.405 | 185 | 26 | 1 | 118 | 301 | 27 | 211 | 9.90e-96 | 287 |
| Msa0069520 | AT2G07734.1 | 85.405 | 185 | 26 | 1 | 118 | 301 | 27 | 211 | 9.90e-96 | 287 |
| Msa0069520 | AT2G07675.1 | 90.678 | 118 | 11 | 0 | 1 | 118 | 1 | 118 | 1.25e-71 | 217 |
| Msa0069520 | ATMG00980.1 | 90.678 | 118 | 11 | 0 | 1 | 118 | 1 | 118 | 1.25e-71 | 217 |
| Msa0069520 | ATCG00905.1 | 66.667 | 78 | 26 | 0 | 41 | 118 | 3 | 80 | 5.40e-31 | 112 |
| Msa0069520 | ATCG01230.1 | 66.667 | 78 | 26 | 0 | 41 | 118 | 3 | 80 | 5.40e-31 | 112 |
Find 69 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACGTCCGATCTTGTTTC+TGG | 0.154996 | 1_2:-37973576 | None:intergenic |
| GCGGGCGTACTCCTTGCTTC+TGG | 0.225224 | 1_2:-37972290 | None:intergenic |
| CAAGGATTTGTTGGGAATTC+CGG | 0.244708 | 1_2:+37972509 | Msa0069520:CDS |
| ATCTTACGTTGAGCTGAATT+TGG | 0.247376 | 1_2:-37972339 | None:intergenic |
| GAGGAATAGTTTCACGAAAA+TGG | 0.254003 | 1_2:-37973611 | None:intergenic |
| GTTCTTCTCCACATTCTTAC+CGG | 0.286315 | 1_2:-37973828 | None:intergenic |
| TGATATATTTGCTCACATTC+CGG | 0.302524 | 1_2:+37972389 | Msa0069520:CDS |
| AACAAGATCGGACGTTATTC+CGG | 0.309578 | 1_2:+37973581 | Msa0069520:CDS |
| CGGGCGTACTCCTTGCTTCT+GGG | 0.326117 | 1_2:-37972289 | None:intergenic |
| ACTAGGCTACTTGACTAAAA+AGG | 0.348868 | 1_2:-37973896 | None:intergenic |
| CAAACCCTTCGATGACTTAT+CGG | 0.352144 | 1_2:-37973645 | None:intergenic |
| GATATATTTGCTCACATTCC+GGG | 0.354563 | 1_2:+37972390 | Msa0069520:CDS |
| TCTTCTTGTTCCTCAATCTT+CGG | 0.379001 | 1_2:-37973398 | None:intergenic |
| GAATCCGCGGTGAAGAAATA+AGG | 0.383183 | 1_2:+37973748 | Msa0069520:CDS |
| TAGGTGGAACCATTCTGTTT+TGG | 0.386834 | 1_2:-37973850 | None:intergenic |
| TGGGTAAATCCCCATGAAAA+AGG | 0.391419 | 1_2:-37973497 | None:intergenic |
| GTTTCTGGATTGAGTAGAAA+AGG | 0.411543 | 1_2:-37973561 | None:intergenic |
| CGAGGAGTCAAGGATTTGTT+GGG | 0.416175 | 1_2:+37972501 | Msa0069520:CDS |
| TCGAGGAGTCAAGGATTTGT+TGG | 0.418048 | 1_2:+37972500 | Msa0069520:CDS |
| TCCTCTGTGCATCTCTGTGA+TGG | 0.419702 | 1_2:-37973517 | None:intergenic |
| AGAAGAGGCAGATCAAAATA+TGG | 0.430997 | 1_2:+37972537 | Msa0069520:CDS |
| CGAATCAATTGATTTAATGT+AGG | 0.458996 | 1_2:-37972210 | None:intergenic |
| CACGGACCGTACTCGAGCTT+CGG | 0.459749 | 1_2:+37972257 | Msa0069520:CDS |
| ACATTCTTACCGGGTGATCC+AGG | 0.465484 | 1_2:-37973818 | None:intergenic |
| TCGATTGCTCAATCGTACTT+TGG | 0.467988 | 1_2:-37972364 | None:intergenic |
| ACTTTCGTGTAGTTTGTGAT+TGG | 0.473847 | 1_2:-37973470 | None:intergenic |
| GTCTACTTTCAGGAAATGTT+CGG | 0.476906 | 1_2:+37973340 | Msa0069520:intron |
| GATCTGCCTCTTCTTCGATC+CGG | 0.495631 | 1_2:-37972528 | None:intergenic |
| CTTGACTCCTCGAATACAAT+GGG | 0.496906 | 1_2:-37972490 | None:intergenic |
| TCACGAAAATGGAGACGAAC+CGG | 0.502616 | 1_2:-37973600 | None:intergenic |
| TTTCTGGATTGAGTAGAAAA+GGG | 0.504381 | 1_2:-37973560 | None:intergenic |
| CATTCTACGGTCTTAATAAG+AGG | 0.509133 | 1_2:+37972435 | Msa0069520:CDS |
| TTCTTCTCCACATTCTTACC+GGG | 0.515532 | 1_2:-37973827 | None:intergenic |
| CCACCTACTCAAAACTAAGC+GGG | 0.517088 | 1_2:+37973866 | Msa0069520:CDS |
| TCCTCAATCTTCGGAGAATG+CGG | 0.524037 | 1_2:-37973389 | None:intergenic |
| GCCGCATTCTCCGAAGATTG+AGG | 0.524279 | 1_2:+37973388 | Msa0069520:CDS |
| GGTAGAGTTAAAGATTTGCC+AGG | 0.536394 | 1_2:+37972459 | Msa0069520:CDS |
| TTTGCTCACATTCCGGGCGA+AGG | 0.538531 | 1_2:+37972396 | Msa0069520:CDS |
| ATTGATCCGAAGCTCGAGTA+CGG | 0.542451 | 1_2:-37972263 | None:intergenic |
| CCTCTGTGCATCTCTGTGAT+GGG | 0.548559 | 1_2:-37973516 | None:intergenic |
| GTGAAATCCCATTGTATTCG+AGG | 0.549831 | 1_2:+37972483 | Msa0069520:CDS |
| AGGAAAATTCCTGGATCACC+CGG | 0.551944 | 1_2:+37973809 | Msa0069520:CDS |
| CCTTGACTCCTCGAATACAA+TGG | 0.552314 | 1_2:-37972491 | None:intergenic |
| CCATTGTATTCGAGGAGTCA+AGG | 0.553703 | 1_2:+37972491 | Msa0069520:CDS |
| GGGCGAAGGTCATAATTCGC+AGG | 0.554524 | 1_2:+37972410 | Msa0069520:CDS |
| TGCGAATTATGACCTTCGCC+CGG | 0.559329 | 1_2:-37972408 | None:intergenic |
| GAAAATGACGCGAGAATCCG+CGG | 0.565337 | 1_2:+37973735 | Msa0069520:CDS |
| TAATTCGCAGGAACATTCTA+CGG | 0.570921 | 1_2:+37972422 | Msa0069520:CDS |
| TTAAATCAATTGATTCGTCA+TGG | 0.572229 | 1_2:+37972216 | Msa0069520:CDS |
| ATACAATGGGATTTCACACC+TGG | 0.575815 | 1_2:-37972477 | None:intergenic |
| GGCAGCCGATAAGTCATCGA+AGG | 0.579268 | 1_2:+37973640 | Msa0069520:CDS |
| CTTATCGGCTGCCTTGCTTG+AGG | 0.586187 | 1_2:-37973630 | None:intergenic |
| TGGATCACCCGGTAAGAATG+TGG | 0.593751 | 1_2:+37973820 | Msa0069520:CDS |
| GTGAAACTATTCCTCAAGCA+AGG | 0.600900 | 1_2:+37973619 | Msa0069520:CDS |
| GGGCGTACTCCTTGCTTCTG+GGG | 0.603634 | 1_2:-37972288 | None:intergenic |
| GATCAATGTCCCCAGAAGCA+AGG | 0.611270 | 1_2:+37972279 | Msa0069520:CDS |
| AAAAGATATTAGATCACCGT+GGG | 0.612453 | 1_2:-37973709 | None:intergenic |
| GGAGAAGAACCAAAACAGAA+TGG | 0.614037 | 1_2:+37973841 | Msa0069520:CDS |
| GGAATTCCGGATCGAAGAAG+AGG | 0.614106 | 1_2:+37972522 | Msa0069520:CDS |
| GGTTTGTGTGAATAATCGAA+TGG | 0.625206 | 1_2:+37973662 | Msa0069520:CDS |
| CACCTACTCAAAACTAAGCG+GGG | 0.643253 | 1_2:+37973867 | Msa0069520:CDS |
| ACTCAATCCAGAAACAAGAT+CGG | 0.651613 | 1_2:+37973569 | Msa0069520:CDS |
| ACTCGTTTGAAAGTTTCCCA+CGG | 0.653886 | 1_2:+37973693 | Msa0069520:CDS |
| GCAGCCGATAAGTCATCGAA+GGG | 0.664381 | 1_2:+37973641 | Msa0069520:CDS |
| TCTACGGTCTTAATAAGAGG+AGG | 0.670870 | 1_2:+37972438 | Msa0069520:CDS |
| TCCACCTACTCAAAACTAAG+CGG | 0.674271 | 1_2:+37973865 | Msa0069520:CDS |
| ATCTCCTTATTTCTTCACCG+CGG | 0.682529 | 1_2:-37973752 | None:intergenic |
| GAAAAGATATTAGATCACCG+TGG | 0.696122 | 1_2:-37973710 | None:intergenic |
| CCCATCACAGAGATGCACAG+AGG | 0.749745 | 1_2:+37973516 | Msa0069520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTCTTGAATCTCAT+CGG | + | chr1_2:37972605-37972624 | Msa0069520:intron | 20.0% |
| !!! | TATCTTCTTCTTTTATGAAT+AGG | - | chr1_2:37973126-37973145 | None:intergenic | 20.0% |
| !! | ATTCATAAAAGAAGAAGATA+AGG | + | chr1_2:37973126-37973145 | Msa0069520:intron | 20.0% |
| !! | ATATCAGTTGAAAAAATCAT+AGG | + | chr1_2:37973789-37973808 | Msa0069520:CDS | 20.0% |
| !!! | TTATTTTTCTTGAATCTCAT+CGG | + | chr1_2:37972605-37972624 | Msa0069520:intron | 20.0% |
| !!! | TATCTTCTTCTTTTATGAAT+AGG | - | chr1_2:37973126-37973145 | None:intergenic | 20.0% |
| !! | ATTCATAAAAGAAGAAGATA+AGG | + | chr1_2:37973126-37973145 | Msa0069520:intron | 20.0% |
| !! | ATATCAGTTGAAAAAATCAT+AGG | + | chr1_2:37973789-37973808 | Msa0069520:CDS | 20.0% |
| !! | CGAATCAATTGATTTAATGT+AGG | - | chr1_2:37972213-37972232 | None:intergenic | 25.0% |
| !!! | TTAAATCAATTGATTCGTCA+TGG | + | chr1_2:37972216-37972235 | Msa0069520:CDS | 25.0% |
| ! | AAAATTAATTGCTCAAAGAC+CGG | + | chr1_2:37972981-37973000 | Msa0069520:intron | 25.0% |
| ! | ATAAAAGAAGAAGATAAGGA+AGG | + | chr1_2:37973130-37973149 | Msa0069520:intron | 25.0% |
| ! | TAAAAGAAGAAGATAAGGAA+GGG | + | chr1_2:37973131-37973150 | Msa0069520:intron | 25.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | - | chr1_2:37973447-37973466 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | + | chr1_2:37973800-37973819 | Msa0069520:CDS | 25.0% |
| !! | CGAATCAATTGATTTAATGT+AGG | - | chr1_2:37972213-37972232 | None:intergenic | 25.0% |
| !!! | TTAAATCAATTGATTCGTCA+TGG | + | chr1_2:37972216-37972235 | Msa0069520:CDS | 25.0% |
| ! | AAAATTAATTGCTCAAAGAC+CGG | + | chr1_2:37972981-37973000 | Msa0069520:intron | 25.0% |
| ! | ATAAAAGAAGAAGATAAGGA+AGG | + | chr1_2:37973130-37973149 | Msa0069520:intron | 25.0% |
| ! | TAAAAGAAGAAGATAAGGAA+GGG | + | chr1_2:37973131-37973150 | Msa0069520:intron | 25.0% |
| !! | TAACTGTTAAGATTTTCTCT+CGG | - | chr1_2:37973447-37973466 | None:intergenic | 25.0% |
| ! | AAAAATCATAGGAAAATTCC+TGG | + | chr1_2:37973800-37973819 | Msa0069520:CDS | 25.0% |
| !!! | TGAGCTGAATTTGGTTTTTT+CGG | - | chr1_2:37972333-37972352 | None:intergenic | 30.0% |
| TGATATATTTGCTCACATTC+CGG | + | chr1_2:37972389-37972408 | Msa0069520:CDS | 30.0% | |
| AAAACCCAAATCGATATGAA+TGG | + | chr1_2:37972566-37972585 | Msa0069520:intron | 30.0% | |
| TCAAGAAAAATAAGTTCCAG+AGG | - | chr1_2:37972598-37972617 | None:intergenic | 30.0% | |
| AAATAGTTAGCAGGTAAAGT+AGG | + | chr1_2:37972681-37972700 | Msa0069520:intron | 30.0% | |
| TGGATCTTTGTAGAAAACAT+AGG | + | chr1_2:37972871-37972890 | Msa0069520:intron | 30.0% | |
| AAGGAAATAAAGTCAAGGAA+AGG | + | chr1_2:37972954-37972973 | Msa0069520:intron | 30.0% | |
| GATATTGAATGAAGAAAGAG+AGG | + | chr1_2:37973174-37973193 | Msa0069520:intron | 30.0% | |
| !!! | AGTTTCCATCTTGTTTTTGT+CGG | + | chr1_2:37973216-37973235 | Msa0069520:intron | 30.0% |
| TCTTTATCTTTCTTTCCTTG+GGG | - | chr1_2:37973295-37973314 | None:intergenic | 30.0% | |
| GTCTTTATCTTTCTTTCCTT+GGG | - | chr1_2:37973296-37973315 | None:intergenic | 30.0% | |
| CAAGGAAAGAAAGATAAAGA+CGG | + | chr1_2:37973295-37973314 | Msa0069520:intron | 30.0% | |
| AAGGAAAGAAAGATAAAGAC+GGG | + | chr1_2:37973296-37973315 | Msa0069520:intron | 30.0% | |
| TTTCTGGATTGAGTAGAAAA+GGG | - | chr1_2:37973563-37973582 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | - | chr1_2:37973712-37973731 | None:intergenic | 30.0% | |
| !!! | TGAGCTGAATTTGGTTTTTT+CGG | - | chr1_2:37972333-37972352 | None:intergenic | 30.0% |
| TGATATATTTGCTCACATTC+CGG | + | chr1_2:37972389-37972408 | Msa0069520:CDS | 30.0% | |
| AAAACCCAAATCGATATGAA+TGG | + | chr1_2:37972566-37972585 | Msa0069520:intron | 30.0% | |
| TCAAGAAAAATAAGTTCCAG+AGG | - | chr1_2:37972598-37972617 | None:intergenic | 30.0% | |
| AAATAGTTAGCAGGTAAAGT+AGG | + | chr1_2:37972681-37972700 | Msa0069520:intron | 30.0% | |
| TGGATCTTTGTAGAAAACAT+AGG | + | chr1_2:37972871-37972890 | Msa0069520:intron | 30.0% | |
| AAGGAAATAAAGTCAAGGAA+AGG | + | chr1_2:37972954-37972973 | Msa0069520:intron | 30.0% | |
| GATATTGAATGAAGAAAGAG+AGG | + | chr1_2:37973174-37973193 | Msa0069520:intron | 30.0% | |
| !!! | AGTTTCCATCTTGTTTTTGT+CGG | + | chr1_2:37973216-37973235 | Msa0069520:intron | 30.0% |
| TCTTTATCTTTCTTTCCTTG+GGG | - | chr1_2:37973295-37973314 | None:intergenic | 30.0% | |
| GTCTTTATCTTTCTTTCCTT+GGG | - | chr1_2:37973296-37973315 | None:intergenic | 30.0% | |
| CAAGGAAAGAAAGATAAAGA+CGG | + | chr1_2:37973295-37973314 | Msa0069520:intron | 30.0% | |
| AAGGAAAGAAAGATAAAGAC+GGG | + | chr1_2:37973296-37973315 | Msa0069520:intron | 30.0% | |
| TTTCTGGATTGAGTAGAAAA+GGG | - | chr1_2:37973563-37973582 | None:intergenic | 30.0% | |
| AAAAGATATTAGATCACCGT+GGG | - | chr1_2:37973712-37973731 | None:intergenic | 30.0% | |
| GTCATGGTAGAGAAGAAAAA+CGG | + | chr1_2:37972232-37972251 | Msa0069520:CDS | 35.0% | |
| ATCTTACGTTGAGCTGAATT+TGG | - | chr1_2:37972342-37972361 | None:intergenic | 35.0% | |
| GATATATTTGCTCACATTCC+GGG | + | chr1_2:37972390-37972409 | Msa0069520:CDS | 35.0% | |
| TAATTCGCAGGAACATTCTA+CGG | + | chr1_2:37972422-37972441 | Msa0069520:CDS | 35.0% | |
| CATTCTACGGTCTTAATAAG+AGG | + | chr1_2:37972435-37972454 | Msa0069520:CDS | 35.0% | |
| AGAAGAGGCAGATCAAAATA+TGG | + | chr1_2:37972537-37972556 | Msa0069520:CDS | 35.0% | |
| !! | TCCTCCATTCATATCGATTT+GGG | - | chr1_2:37972573-37972592 | None:intergenic | 35.0% |
| ! | ATCCTCCATTCATATCGATT+TGG | - | chr1_2:37972574-37972593 | None:intergenic | 35.0% |
| TTGAATCTCATCGGATCAAT+CGG | + | chr1_2:37972614-37972633 | Msa0069520:intron | 35.0% | |
| TTAACCCCAATTCATCTTCT+GGG | - | chr1_2:37972651-37972670 | None:intergenic | 35.0% | |
| ATTAACCCCAATTCATCTTC+TGG | - | chr1_2:37972652-37972671 | None:intergenic | 35.0% | |
| TTACCTGCTAACTATTTAGC+TGG | - | chr1_2:37972678-37972697 | None:intergenic | 35.0% | |
| GGTGAAAGGTTCTTATCTAT+GGG | - | chr1_2:37972710-37972729 | None:intergenic | 35.0% | |
| GAAGTTGCTTCTAACAAAGA+GGG | - | chr1_2:37972817-37972836 | None:intergenic | 35.0% | |
| TGAAGTTGCTTCTAACAAAG+AGG | - | chr1_2:37972818-37972837 | None:intergenic | 35.0% | |
| TCTTTGTTAGAAGCAACTTC+AGG | + | chr1_2:37972817-37972836 | Msa0069520:intron | 35.0% | |
| TGAACGGAACAACAAATATG+TGG | + | chr1_2:37972851-37972870 | Msa0069520:intron | 35.0% | |
| ! | GACTTTATTTCCTTCGTCTT+CGG | - | chr1_2:37972948-37972967 | None:intergenic | 35.0% |
| AGACGAAGGAAATAAAGTCA+AGG | + | chr1_2:37972949-37972968 | Msa0069520:intron | 35.0% | |
| ! | GAATAGAAAGCACGATTAAG+CGG | - | chr1_2:37973104-37973123 | None:intergenic | 35.0% |
| GACAAAAACAAGATGGAAAC+TGG | - | chr1_2:37973217-37973236 | None:intergenic | 35.0% | |
| !!! | GTTTCCATCTTGTTTTTGTC+GGG | + | chr1_2:37973217-37973236 | Msa0069520:intron | 35.0% |
| !!! | TTTCCATCTTGTTTTTGTCG+GGG | + | chr1_2:37973218-37973237 | Msa0069520:intron | 35.0% |
| CTTTATCTTTCTTTCCTTGG+GGG | - | chr1_2:37973294-37973313 | None:intergenic | 35.0% | |
| CGTCTTTATCTTTCTTTCCT+TGG | - | chr1_2:37973297-37973316 | None:intergenic | 35.0% | |
| AAAACTTGTCGTCTACTTTC+AGG | + | chr1_2:37973330-37973349 | Msa0069520:intron | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | + | chr1_2:37973340-37973359 | Msa0069520:intron | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | - | chr1_2:37973401-37973420 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | - | chr1_2:37973473-37973492 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | - | chr1_2:37973564-37973583 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | + | chr1_2:37973569-37973588 | Msa0069520:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | - | chr1_2:37973614-37973633 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | + | chr1_2:37973662-37973681 | Msa0069520:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | - | chr1_2:37973713-37973732 | None:intergenic | 35.0% | |
| GTCATGGTAGAGAAGAAAAA+CGG | + | chr1_2:37972232-37972251 | Msa0069520:CDS | 35.0% | |
| ATCTTACGTTGAGCTGAATT+TGG | - | chr1_2:37972342-37972361 | None:intergenic | 35.0% | |
| GATATATTTGCTCACATTCC+GGG | + | chr1_2:37972390-37972409 | Msa0069520:CDS | 35.0% | |
| TAATTCGCAGGAACATTCTA+CGG | + | chr1_2:37972422-37972441 | Msa0069520:CDS | 35.0% | |
| CATTCTACGGTCTTAATAAG+AGG | + | chr1_2:37972435-37972454 | Msa0069520:CDS | 35.0% | |
| AGAAGAGGCAGATCAAAATA+TGG | + | chr1_2:37972537-37972556 | Msa0069520:CDS | 35.0% | |
| !! | TCCTCCATTCATATCGATTT+GGG | - | chr1_2:37972573-37972592 | None:intergenic | 35.0% |
| ! | ATCCTCCATTCATATCGATT+TGG | - | chr1_2:37972574-37972593 | None:intergenic | 35.0% |
| TTGAATCTCATCGGATCAAT+CGG | + | chr1_2:37972614-37972633 | Msa0069520:intron | 35.0% | |
| TTAACCCCAATTCATCTTCT+GGG | - | chr1_2:37972651-37972670 | None:intergenic | 35.0% | |
| ATTAACCCCAATTCATCTTC+TGG | - | chr1_2:37972652-37972671 | None:intergenic | 35.0% | |
| TTACCTGCTAACTATTTAGC+TGG | - | chr1_2:37972678-37972697 | None:intergenic | 35.0% | |
| GGTGAAAGGTTCTTATCTAT+GGG | - | chr1_2:37972710-37972729 | None:intergenic | 35.0% | |
| GAAGTTGCTTCTAACAAAGA+GGG | - | chr1_2:37972817-37972836 | None:intergenic | 35.0% | |
| TGAAGTTGCTTCTAACAAAG+AGG | - | chr1_2:37972818-37972837 | None:intergenic | 35.0% | |
| TCTTTGTTAGAAGCAACTTC+AGG | + | chr1_2:37972817-37972836 | Msa0069520:intron | 35.0% | |
| TGAACGGAACAACAAATATG+TGG | + | chr1_2:37972851-37972870 | Msa0069520:intron | 35.0% | |
| ! | GACTTTATTTCCTTCGTCTT+CGG | - | chr1_2:37972948-37972967 | None:intergenic | 35.0% |
| AGACGAAGGAAATAAAGTCA+AGG | + | chr1_2:37972949-37972968 | Msa0069520:intron | 35.0% | |
| ! | GAATAGAAAGCACGATTAAG+CGG | - | chr1_2:37973104-37973123 | None:intergenic | 35.0% |
| GACAAAAACAAGATGGAAAC+TGG | - | chr1_2:37973217-37973236 | None:intergenic | 35.0% | |
| !!! | GTTTCCATCTTGTTTTTGTC+GGG | + | chr1_2:37973217-37973236 | Msa0069520:intron | 35.0% |
| !!! | TTTCCATCTTGTTTTTGTCG+GGG | + | chr1_2:37973218-37973237 | Msa0069520:intron | 35.0% |
| CTTTATCTTTCTTTCCTTGG+GGG | - | chr1_2:37973294-37973313 | None:intergenic | 35.0% | |
| CGTCTTTATCTTTCTTTCCT+TGG | - | chr1_2:37973297-37973316 | None:intergenic | 35.0% | |
| AAAACTTGTCGTCTACTTTC+AGG | + | chr1_2:37973330-37973349 | Msa0069520:intron | 35.0% | |
| GTCTACTTTCAGGAAATGTT+CGG | + | chr1_2:37973340-37973359 | Msa0069520:intron | 35.0% | |
| TCTTCTTGTTCCTCAATCTT+CGG | - | chr1_2:37973401-37973420 | None:intergenic | 35.0% | |
| ! | ACTTTCGTGTAGTTTGTGAT+TGG | - | chr1_2:37973473-37973492 | None:intergenic | 35.0% |
| ! | GTTTCTGGATTGAGTAGAAA+AGG | - | chr1_2:37973564-37973583 | None:intergenic | 35.0% |
| ACTCAATCCAGAAACAAGAT+CGG | + | chr1_2:37973569-37973588 | Msa0069520:CDS | 35.0% | |
| GAGGAATAGTTTCACGAAAA+TGG | - | chr1_2:37973614-37973633 | None:intergenic | 35.0% | |
| GGTTTGTGTGAATAATCGAA+TGG | + | chr1_2:37973662-37973681 | Msa0069520:CDS | 35.0% | |
| GAAAAGATATTAGATCACCG+TGG | - | chr1_2:37973713-37973732 | None:intergenic | 35.0% | |
| GTGTTCTCTTAAAAACACGC+GGG | - | chr1_2:37972311-37972330 | None:intergenic | 40.0% | |
| GGTGTTCTCTTAAAAACACG+CGG | - | chr1_2:37972312-37972331 | None:intergenic | 40.0% | |
| TCGATTGCTCAATCGTACTT+TGG | - | chr1_2:37972367-37972386 | None:intergenic | 40.0% | |
| TCTACGGTCTTAATAAGAGG+AGG | + | chr1_2:37972438-37972457 | Msa0069520:CDS | 40.0% | |
| GGTAGAGTTAAAGATTTGCC+AGG | + | chr1_2:37972459-37972478 | Msa0069520:CDS | 40.0% | |
| ATACAATGGGATTTCACACC+TGG | - | chr1_2:37972480-37972499 | None:intergenic | 40.0% | |
| GTGAAATCCCATTGTATTCG+AGG | + | chr1_2:37972483-37972502 | Msa0069520:CDS | 40.0% | |
| CTTGACTCCTCGAATACAAT+GGG | - | chr1_2:37972493-37972512 | None:intergenic | 40.0% | |
| !! | CAAGGATTTGTTGGGAATTC+CGG | + | chr1_2:37972509-37972528 | Msa0069520:CDS | 40.0% |
| ACCCAAATCGATATGAATGG+AGG | + | chr1_2:37972569-37972588 | Msa0069520:intron | 40.0% | |
| TAGCCAGCTAAATAGTTAGC+AGG | + | chr1_2:37972672-37972691 | Msa0069520:intron | 40.0% | |
| GGGTGAAAGGTTCTTATCTA+TGG | - | chr1_2:37972711-37972730 | None:intergenic | 40.0% | |
| TACTACGTACTCGATGGAAA+GGG | - | chr1_2:37972733-37972752 | None:intergenic | 40.0% | |
| TTTCCATCGAGTACGTAGTA+GGG | + | chr1_2:37972733-37972752 | Msa0069520:intron | 40.0% | |
| GAAAGAGAGGTAAATGAGAC+TGG | + | chr1_2:37973187-37973206 | Msa0069520:intron | 40.0% | |
| !!! | TTCCATCTTGTTTTTGTCGG+GGG | + | chr1_2:37973219-37973238 | Msa0069520:intron | 40.0% |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | + | chr1_2:37973487-37973506 | Msa0069520:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | + | chr1_2:37973488-37973507 | Msa0069520:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | - | chr1_2:37973498-37973517 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | - | chr1_2:37973499-37973518 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | - | chr1_2:37973500-37973519 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | - | chr1_2:37973579-37973598 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | + | chr1_2:37973581-37973600 | Msa0069520:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | + | chr1_2:37973619-37973638 | Msa0069520:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | - | chr1_2:37973648-37973667 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | + | chr1_2:37973693-37973712 | Msa0069520:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | - | chr1_2:37973755-37973774 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | - | chr1_2:37973830-37973849 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | - | chr1_2:37973831-37973850 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | + | chr1_2:37973841-37973860 | Msa0069520:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | - | chr1_2:37973853-37973872 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | + | chr1_2:37973865-37973884 | Msa0069520:CDS | 40.0% | |
| AGGCTACTTGACTAAAAAGG+CGG | - | chr1_2:37973896-37973915 | None:intergenic | 40.0% | |
| GTGTTCTCTTAAAAACACGC+GGG | - | chr1_2:37972311-37972330 | None:intergenic | 40.0% | |
| GGTGTTCTCTTAAAAACACG+CGG | - | chr1_2:37972312-37972331 | None:intergenic | 40.0% | |
| TCGATTGCTCAATCGTACTT+TGG | - | chr1_2:37972367-37972386 | None:intergenic | 40.0% | |
| TCTACGGTCTTAATAAGAGG+AGG | + | chr1_2:37972438-37972457 | Msa0069520:CDS | 40.0% | |
| GGTAGAGTTAAAGATTTGCC+AGG | + | chr1_2:37972459-37972478 | Msa0069520:CDS | 40.0% | |
| ATACAATGGGATTTCACACC+TGG | - | chr1_2:37972480-37972499 | None:intergenic | 40.0% | |
| GTGAAATCCCATTGTATTCG+AGG | + | chr1_2:37972483-37972502 | Msa0069520:CDS | 40.0% | |
| CTTGACTCCTCGAATACAAT+GGG | - | chr1_2:37972493-37972512 | None:intergenic | 40.0% | |
| !! | CAAGGATTTGTTGGGAATTC+CGG | + | chr1_2:37972509-37972528 | Msa0069520:CDS | 40.0% |
| ACCCAAATCGATATGAATGG+AGG | + | chr1_2:37972569-37972588 | Msa0069520:intron | 40.0% | |
| TAGCCAGCTAAATAGTTAGC+AGG | + | chr1_2:37972672-37972691 | Msa0069520:intron | 40.0% | |
| GGGTGAAAGGTTCTTATCTA+TGG | - | chr1_2:37972711-37972730 | None:intergenic | 40.0% | |
| TACTACGTACTCGATGGAAA+GGG | - | chr1_2:37972733-37972752 | None:intergenic | 40.0% | |
| TTTCCATCGAGTACGTAGTA+GGG | + | chr1_2:37972733-37972752 | Msa0069520:intron | 40.0% | |
| GAAAGAGAGGTAAATGAGAC+TGG | + | chr1_2:37973187-37973206 | Msa0069520:intron | 40.0% | |
| !!! | TTCCATCTTGTTTTTGTCGG+GGG | + | chr1_2:37973219-37973238 | Msa0069520:intron | 40.0% |
| !! | GAAAGTTGCCCCTTTTTCAT+GGG | + | chr1_2:37973487-37973506 | Msa0069520:CDS | 40.0% |
| !! | AAAGTTGCCCCTTTTTCATG+GGG | + | chr1_2:37973488-37973507 | Msa0069520:CDS | 40.0% |
| GGTAAATCCCCATGAAAAAG+GGG | - | chr1_2:37973498-37973517 | None:intergenic | 40.0% | |
| GGGTAAATCCCCATGAAAAA+GGG | - | chr1_2:37973499-37973518 | None:intergenic | 40.0% | |
| TGGGTAAATCCCCATGAAAA+AGG | - | chr1_2:37973500-37973519 | None:intergenic | 40.0% | |
| ! | ATAACGTCCGATCTTGTTTC+TGG | - | chr1_2:37973579-37973598 | None:intergenic | 40.0% |
| AACAAGATCGGACGTTATTC+CGG | + | chr1_2:37973581-37973600 | Msa0069520:CDS | 40.0% | |
| GTGAAACTATTCCTCAAGCA+AGG | + | chr1_2:37973619-37973638 | Msa0069520:CDS | 40.0% | |
| CAAACCCTTCGATGACTTAT+CGG | - | chr1_2:37973648-37973667 | None:intergenic | 40.0% | |
| ACTCGTTTGAAAGTTTCCCA+CGG | + | chr1_2:37973693-37973712 | Msa0069520:CDS | 40.0% | |
| ! | ATCTCCTTATTTCTTCACCG+CGG | - | chr1_2:37973755-37973774 | None:intergenic | 40.0% |
| TTCTTCTCCACATTCTTACC+GGG | - | chr1_2:37973830-37973849 | None:intergenic | 40.0% | |
| GTTCTTCTCCACATTCTTAC+CGG | - | chr1_2:37973831-37973850 | None:intergenic | 40.0% | |
| GGAGAAGAACCAAAACAGAA+TGG | + | chr1_2:37973841-37973860 | Msa0069520:CDS | 40.0% | |
| ! | TAGGTGGAACCATTCTGTTT+TGG | - | chr1_2:37973853-37973872 | None:intergenic | 40.0% |
| TCCACCTACTCAAAACTAAG+CGG | + | chr1_2:37973865-37973884 | Msa0069520:CDS | 40.0% | |
| AGGCTACTTGACTAAAAAGG+CGG | - | chr1_2:37973896-37973915 | None:intergenic | 40.0% | |
| TAGAGAAGAAAAACGGCGCA+CGG | + | chr1_2:37972239-37972258 | Msa0069520:CDS | 45.0% | |
| ATTGATCCGAAGCTCGAGTA+CGG | - | chr1_2:37972266-37972285 | None:intergenic | 45.0% | |
| CCTTGACTCCTCGAATACAA+TGG | - | chr1_2:37972494-37972513 | None:intergenic | 45.0% | |
| CCATTGTATTCGAGGAGTCA+AGG | + | chr1_2:37972491-37972510 | Msa0069520:CDS | 45.0% | |
| TCGAGGAGTCAAGGATTTGT+TGG | + | chr1_2:37972500-37972519 | Msa0069520:CDS | 45.0% | |
| ! | CGAGGAGTCAAGGATTTGTT+GGG | + | chr1_2:37972501-37972520 | Msa0069520:CDS | 45.0% |
| ATATGAATGGAGGATGCCTC+TGG | + | chr1_2:37972579-37972598 | Msa0069520:intron | 45.0% | |
| GGGAACCCAGAAGATGAATT+GGG | + | chr1_2:37972643-37972662 | Msa0069520:intron | 45.0% | |
| GGAACCCAGAAGATGAATTG+GGG | + | chr1_2:37972644-37972663 | Msa0069520:intron | 45.0% | |
| ACTACGTACTCGATGGAAAG+GGG | - | chr1_2:37972732-37972751 | None:intergenic | 45.0% | |
| CTACTACGTACTCGATGGAA+AGG | - | chr1_2:37972734-37972753 | None:intergenic | 45.0% | |
| CTTTCCATCGAGTACGTAGT+AGG | + | chr1_2:37972732-37972751 | Msa0069520:intron | 45.0% | |
| ATTCCCTACTACGTACTCGA+TGG | - | chr1_2:37972739-37972758 | None:intergenic | 45.0% | |
| ! | TCAGGATCAACAGCGTTGAA+CGG | + | chr1_2:37972835-37972854 | Msa0069520:intron | 45.0% |
| AACTGAAACCATTCCACGTG+CGG | + | chr1_2:37972916-37972935 | Msa0069520:intron | 45.0% | |
| TGACGCAAACGGATACACAA+AGG | - | chr1_2:37973032-37973051 | None:intergenic | 45.0% | |
| !! | TCAGCATTGGCTTCAGACAT+AGG | + | chr1_2:37973049-37973068 | Msa0069520:intron | 45.0% |
| !! | CATTGGCTTCAGACATAGGA+AGG | + | chr1_2:37973053-37973072 | Msa0069520:intron | 45.0% |
| ! | AGGAGTTGACTGATTCTCGA+TGG | + | chr1_2:37973073-37973092 | Msa0069520:intron | 45.0% |
| AACCCCCGACAAAAACAAGA+TGG | - | chr1_2:37973224-37973243 | None:intergenic | 45.0% | |
| !!! | CTTGTTTTTGTCGGGGGTTT+TGG | + | chr1_2:37973225-37973244 | Msa0069520:intron | 45.0% |
| TCCTCAATCTTCGGAGAATG+CGG | - | chr1_2:37973392-37973411 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | + | chr1_2:37973486-37973505 | Msa0069520:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | - | chr1_2:37973603-37973622 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | + | chr1_2:37973748-37973767 | Msa0069520:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | + | chr1_2:37973809-37973828 | Msa0069520:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | + | chr1_2:37973866-37973885 | Msa0069520:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | + | chr1_2:37973867-37973886 | Msa0069520:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | - | chr1_2:37973872-37973891 | None:intergenic | 45.0% |
| TAGAGAAGAAAAACGGCGCA+CGG | + | chr1_2:37972239-37972258 | Msa0069520:CDS | 45.0% | |
| ATTGATCCGAAGCTCGAGTA+CGG | - | chr1_2:37972266-37972285 | None:intergenic | 45.0% | |
| CCTTGACTCCTCGAATACAA+TGG | - | chr1_2:37972494-37972513 | None:intergenic | 45.0% | |
| CCATTGTATTCGAGGAGTCA+AGG | + | chr1_2:37972491-37972510 | Msa0069520:CDS | 45.0% | |
| TCGAGGAGTCAAGGATTTGT+TGG | + | chr1_2:37972500-37972519 | Msa0069520:CDS | 45.0% | |
| ! | CGAGGAGTCAAGGATTTGTT+GGG | + | chr1_2:37972501-37972520 | Msa0069520:CDS | 45.0% |
| ATATGAATGGAGGATGCCTC+TGG | + | chr1_2:37972579-37972598 | Msa0069520:intron | 45.0% | |
| GGGAACCCAGAAGATGAATT+GGG | + | chr1_2:37972643-37972662 | Msa0069520:intron | 45.0% | |
| GGAACCCAGAAGATGAATTG+GGG | + | chr1_2:37972644-37972663 | Msa0069520:intron | 45.0% | |
| ACTACGTACTCGATGGAAAG+GGG | - | chr1_2:37972732-37972751 | None:intergenic | 45.0% | |
| CTACTACGTACTCGATGGAA+AGG | - | chr1_2:37972734-37972753 | None:intergenic | 45.0% | |
| CTTTCCATCGAGTACGTAGT+AGG | + | chr1_2:37972732-37972751 | Msa0069520:intron | 45.0% | |
| ATTCCCTACTACGTACTCGA+TGG | - | chr1_2:37972739-37972758 | None:intergenic | 45.0% | |
| ! | TCAGGATCAACAGCGTTGAA+CGG | + | chr1_2:37972835-37972854 | Msa0069520:intron | 45.0% |
| AACTGAAACCATTCCACGTG+CGG | + | chr1_2:37972916-37972935 | Msa0069520:intron | 45.0% | |
| TGACGCAAACGGATACACAA+AGG | - | chr1_2:37973032-37973051 | None:intergenic | 45.0% | |
| !! | TCAGCATTGGCTTCAGACAT+AGG | + | chr1_2:37973049-37973068 | Msa0069520:intron | 45.0% |
| !! | CATTGGCTTCAGACATAGGA+AGG | + | chr1_2:37973053-37973072 | Msa0069520:intron | 45.0% |
| ! | AGGAGTTGACTGATTCTCGA+TGG | + | chr1_2:37973073-37973092 | Msa0069520:intron | 45.0% |
| AACCCCCGACAAAAACAAGA+TGG | - | chr1_2:37973224-37973243 | None:intergenic | 45.0% | |
| !!! | CTTGTTTTTGTCGGGGGTTT+TGG | + | chr1_2:37973225-37973244 | Msa0069520:intron | 45.0% |
| TCCTCAATCTTCGGAGAATG+CGG | - | chr1_2:37973392-37973411 | None:intergenic | 45.0% | |
| !! | CGAAAGTTGCCCCTTTTTCA+TGG | + | chr1_2:37973486-37973505 | Msa0069520:CDS | 45.0% |
| TCACGAAAATGGAGACGAAC+CGG | - | chr1_2:37973603-37973622 | None:intergenic | 45.0% | |
| GAATCCGCGGTGAAGAAATA+AGG | + | chr1_2:37973748-37973767 | Msa0069520:CDS | 45.0% | |
| AGGAAAATTCCTGGATCACC+CGG | + | chr1_2:37973809-37973828 | Msa0069520:CDS | 45.0% | |
| CCACCTACTCAAAACTAAGC+GGG | + | chr1_2:37973866-37973885 | Msa0069520:CDS | 45.0% | |
| CACCTACTCAAAACTAAGCG+GGG | + | chr1_2:37973867-37973886 | Msa0069520:CDS | 45.0% | |
| !!! | ATCCCCGCTTAGTTTTGAGT+AGG | - | chr1_2:37973872-37973891 | None:intergenic | 45.0% |
| GATCAATGTCCCCAGAAGCA+AGG | + | chr1_2:37972279-37972298 | Msa0069520:CDS | 50.0% | |
| TGCGAATTATGACCTTCGCC+CGG | - | chr1_2:37972411-37972430 | None:intergenic | 50.0% | |
| GGAATTCCGGATCGAAGAAG+AGG | + | chr1_2:37972522-37972541 | Msa0069520:CDS | 50.0% | |
| GATCTGCCTCTTCTTCGATC+CGG | - | chr1_2:37972531-37972550 | None:intergenic | 50.0% | |
| CGGGAACCCAGAAGATGAAT+TGG | + | chr1_2:37972642-37972661 | Msa0069520:intron | 50.0% | |
| CTACGTACTCGATGGAAAGG+GGG | - | chr1_2:37972731-37972750 | None:intergenic | 50.0% | |
| GAACTCCTTCTCTTCCCCTT+GGG | - | chr1_2:37972778-37972797 | None:intergenic | 50.0% | |
| AGAACTCCTTCTCTTCCCCT+TGG | - | chr1_2:37972779-37972798 | None:intergenic | 50.0% | |
| AGGGGAAGAGAAGGAGTTCT+CGG | + | chr1_2:37972779-37972798 | Msa0069520:intron | 50.0% | |
| AAGAGAAGGAGTTCTCGGTG+TGG | + | chr1_2:37972784-37972803 | Msa0069520:intron | 50.0% | |
| ATTTCCTTCGTCTTCGGCGA+AGG | - | chr1_2:37972942-37972961 | None:intergenic | 50.0% | |
| ! | AATTGCTCAAAGACCGGCTC+CGG | + | chr1_2:37972987-37973006 | Msa0069520:intron | 50.0% |
| GTATCCGTTTGCGTCAGCAT+TGG | + | chr1_2:37973036-37973055 | Msa0069520:intron | 50.0% | |
| GAAGCCAATGCTGACGCAAA+CGG | - | chr1_2:37973043-37973062 | None:intergenic | 50.0% | |
| !! | TCGGGGGTTTTGGCAGAATT+GGG | + | chr1_2:37973235-37973254 | Msa0069520:intron | 50.0% |
| ! | TCCCATAGCCCCTTTTGTTG+CGG | + | chr1_2:37973264-37973283 | Msa0069520:intron | 50.0% |
| CCTCTGTGCATCTCTGTGAT+GGG | - | chr1_2:37973519-37973538 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | - | chr1_2:37973520-37973539 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | + | chr1_2:37973641-37973660 | Msa0069520:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | + | chr1_2:37973735-37973754 | Msa0069520:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | - | chr1_2:37973821-37973840 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | + | chr1_2:37973820-37973839 | Msa0069520:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | - | chr1_2:37973869-37973888 | None:intergenic | 50.0% |
| GATCAATGTCCCCAGAAGCA+AGG | + | chr1_2:37972279-37972298 | Msa0069520:CDS | 50.0% | |
| TGCGAATTATGACCTTCGCC+CGG | - | chr1_2:37972411-37972430 | None:intergenic | 50.0% | |
| GGAATTCCGGATCGAAGAAG+AGG | + | chr1_2:37972522-37972541 | Msa0069520:CDS | 50.0% | |
| GATCTGCCTCTTCTTCGATC+CGG | - | chr1_2:37972531-37972550 | None:intergenic | 50.0% | |
| CGGGAACCCAGAAGATGAAT+TGG | + | chr1_2:37972642-37972661 | Msa0069520:intron | 50.0% | |
| CTACGTACTCGATGGAAAGG+GGG | - | chr1_2:37972731-37972750 | None:intergenic | 50.0% | |
| GAACTCCTTCTCTTCCCCTT+GGG | - | chr1_2:37972778-37972797 | None:intergenic | 50.0% | |
| AGAACTCCTTCTCTTCCCCT+TGG | - | chr1_2:37972779-37972798 | None:intergenic | 50.0% | |
| AGGGGAAGAGAAGGAGTTCT+CGG | + | chr1_2:37972779-37972798 | Msa0069520:intron | 50.0% | |
| AAGAGAAGGAGTTCTCGGTG+TGG | + | chr1_2:37972784-37972803 | Msa0069520:intron | 50.0% | |
| ATTTCCTTCGTCTTCGGCGA+AGG | - | chr1_2:37972942-37972961 | None:intergenic | 50.0% | |
| ! | AATTGCTCAAAGACCGGCTC+CGG | + | chr1_2:37972987-37973006 | Msa0069520:intron | 50.0% |
| GTATCCGTTTGCGTCAGCAT+TGG | + | chr1_2:37973036-37973055 | Msa0069520:intron | 50.0% | |
| GAAGCCAATGCTGACGCAAA+CGG | - | chr1_2:37973043-37973062 | None:intergenic | 50.0% | |
| !! | TCGGGGGTTTTGGCAGAATT+GGG | + | chr1_2:37973235-37973254 | Msa0069520:intron | 50.0% |
| ! | TCCCATAGCCCCTTTTGTTG+CGG | + | chr1_2:37973264-37973283 | Msa0069520:intron | 50.0% |
| CCTCTGTGCATCTCTGTGAT+GGG | - | chr1_2:37973519-37973538 | None:intergenic | 50.0% | |
| TCCTCTGTGCATCTCTGTGA+TGG | - | chr1_2:37973520-37973539 | None:intergenic | 50.0% | |
| GCAGCCGATAAGTCATCGAA+GGG | + | chr1_2:37973641-37973660 | Msa0069520:CDS | 50.0% | |
| GAAAATGACGCGAGAATCCG+CGG | + | chr1_2:37973735-37973754 | Msa0069520:CDS | 50.0% | |
| ACATTCTTACCGGGTGATCC+AGG | - | chr1_2:37973821-37973840 | None:intergenic | 50.0% | |
| TGGATCACCCGGTAAGAATG+TGG | + | chr1_2:37973820-37973839 | Msa0069520:CDS | 50.0% | |
| !!! | CCCGCTTAGTTTTGAGTAGG+TGG | - | chr1_2:37973869-37973888 | None:intergenic | 50.0% |
| TTTGCTCACATTCCGGGCGA+AGG | + | chr1_2:37972396-37972415 | Msa0069520:CDS | 55.0% | |
| GGGCGAAGGTCATAATTCGC+AGG | + | chr1_2:37972410-37972429 | Msa0069520:CDS | 55.0% | |
| TCTCATCGGATCAATCGGCC+AGG | + | chr1_2:37972619-37972638 | Msa0069520:intron | 55.0% | |
| CTCGATGGAAAGGGGGTGAA+AGG | - | chr1_2:37972724-37972743 | None:intergenic | 55.0% | |
| TTCTCTTCCCCTTGGGAGAG+GGG | - | chr1_2:37972771-37972790 | None:intergenic | 55.0% | |
| CTTCTCTTCCCCTTGGGAGA+GGG | - | chr1_2:37972772-37972791 | None:intergenic | 55.0% | |
| ! | ATTGCTCAAAGACCGGCTCC+GGG | + | chr1_2:37972988-37973007 | Msa0069520:intron | 55.0% |
| ATAAGCAGCTTCGCTAGCCC+CGG | - | chr1_2:37973009-37973028 | None:intergenic | 55.0% | |
| !! | TAAGGAAGGGCGTCGTTAGC+AGG | + | chr1_2:37973144-37973163 | Msa0069520:intron | 55.0% |
| !! | GTCGGGGGTTTTGGCAGAAT+TGG | + | chr1_2:37973234-37973253 | Msa0069520:intron | 55.0% |
| GCCGCAACAAAAGGGGCTAT+GGG | - | chr1_2:37973268-37973287 | None:intergenic | 55.0% | |
| TGCCGCAACAAAAGGGGCTA+TGG | - | chr1_2:37973269-37973288 | None:intergenic | 55.0% | |
| GGGGAATGCCGCAACAAAAG+GGG | - | chr1_2:37973275-37973294 | None:intergenic | 55.0% | |
| GGGGGAATGCCGCAACAAAA+GGG | - | chr1_2:37973276-37973295 | None:intergenic | 55.0% | |
| TGGGGGAATGCCGCAACAAA+AGG | - | chr1_2:37973277-37973296 | None:intergenic | 55.0% | |
| TTTGTTGCGGCATTCCCCCA+AGG | + | chr1_2:37973277-37973296 | Msa0069520:intron | 55.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | + | chr1_2:37973388-37973407 | Msa0069520:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | + | chr1_2:37973516-37973535 | Msa0069520:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | - | chr1_2:37973633-37973652 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | + | chr1_2:37973640-37973659 | Msa0069520:CDS | 55.0% | |
| TTTGCTCACATTCCGGGCGA+AGG | + | chr1_2:37972396-37972415 | Msa0069520:CDS | 55.0% | |
| GGGCGAAGGTCATAATTCGC+AGG | + | chr1_2:37972410-37972429 | Msa0069520:CDS | 55.0% | |
| TCTCATCGGATCAATCGGCC+AGG | + | chr1_2:37972619-37972638 | Msa0069520:intron | 55.0% | |
| CTCGATGGAAAGGGGGTGAA+AGG | - | chr1_2:37972724-37972743 | None:intergenic | 55.0% | |
| TTCTCTTCCCCTTGGGAGAG+GGG | - | chr1_2:37972771-37972790 | None:intergenic | 55.0% | |
| CTTCTCTTCCCCTTGGGAGA+GGG | - | chr1_2:37972772-37972791 | None:intergenic | 55.0% | |
| ! | ATTGCTCAAAGACCGGCTCC+GGG | + | chr1_2:37972988-37973007 | Msa0069520:intron | 55.0% |
| ATAAGCAGCTTCGCTAGCCC+CGG | - | chr1_2:37973009-37973028 | None:intergenic | 55.0% | |
| !! | TAAGGAAGGGCGTCGTTAGC+AGG | + | chr1_2:37973144-37973163 | Msa0069520:intron | 55.0% |
| !! | GTCGGGGGTTTTGGCAGAAT+TGG | + | chr1_2:37973234-37973253 | Msa0069520:intron | 55.0% |
| GCCGCAACAAAAGGGGCTAT+GGG | - | chr1_2:37973268-37973287 | None:intergenic | 55.0% | |
| TGCCGCAACAAAAGGGGCTA+TGG | - | chr1_2:37973269-37973288 | None:intergenic | 55.0% | |
| GGGGAATGCCGCAACAAAAG+GGG | - | chr1_2:37973275-37973294 | None:intergenic | 55.0% | |
| GGGGGAATGCCGCAACAAAA+GGG | - | chr1_2:37973276-37973295 | None:intergenic | 55.0% | |
| TGGGGGAATGCCGCAACAAA+AGG | - | chr1_2:37973277-37973296 | None:intergenic | 55.0% | |
| TTTGTTGCGGCATTCCCCCA+AGG | + | chr1_2:37973277-37973296 | Msa0069520:intron | 55.0% | |
| GCCGCATTCTCCGAAGATTG+AGG | + | chr1_2:37973388-37973407 | Msa0069520:CDS | 55.0% | |
| CCCATCACAGAGATGCACAG+AGG | + | chr1_2:37973516-37973535 | Msa0069520:CDS | 55.0% | |
| ! | CTTATCGGCTGCCTTGCTTG+AGG | - | chr1_2:37973633-37973652 | None:intergenic | 55.0% |
| GGCAGCCGATAAGTCATCGA+AGG | + | chr1_2:37973640-37973659 | Msa0069520:CDS | 55.0% | |
| CACGGACCGTACTCGAGCTT+CGG | + | chr1_2:37972257-37972276 | Msa0069520:CDS | 60.0% | |
| GGGCGTACTCCTTGCTTCTG+GGG | - | chr1_2:37972291-37972310 | None:intergenic | 60.0% | |
| CGGGCGTACTCCTTGCTTCT+GGG | - | chr1_2:37972292-37972311 | None:intergenic | 60.0% | |
| CATCGGATCAATCGGCCAGG+CGG | + | chr1_2:37972622-37972641 | Msa0069520:intron | 60.0% | |
| ATCGGATCAATCGGCCAGGC+GGG | + | chr1_2:37972623-37972642 | Msa0069520:intron | 60.0% | |
| TCATCTTCTGGGTTCCCGCC+TGG | - | chr1_2:37972640-37972659 | None:intergenic | 60.0% | |
| GTCAACCACCCCTCTCCCAA+GGG | + | chr1_2:37972760-37972779 | Msa0069520:intron | 60.0% | |
| TCAACCACCCCTCTCCCAAG+GGG | + | chr1_2:37972761-37972780 | Msa0069520:intron | 60.0% | |
| CCTTCTCTTCCCCTTGGGAG+AGG | - | chr1_2:37972773-37972792 | None:intergenic | 60.0% | |
| CCTCTCCCAAGGGGAAGAGA+AGG | + | chr1_2:37972770-37972789 | Msa0069520:intron | 60.0% | |
| ! | TTGCTCAAAGACCGGCTCCG+GGG | + | chr1_2:37972989-37973008 | Msa0069520:intron | 60.0% |
| CACGGACCGTACTCGAGCTT+CGG | + | chr1_2:37972257-37972276 | Msa0069520:CDS | 60.0% | |
| GGGCGTACTCCTTGCTTCTG+GGG | - | chr1_2:37972291-37972310 | None:intergenic | 60.0% | |
| CGGGCGTACTCCTTGCTTCT+GGG | - | chr1_2:37972292-37972311 | None:intergenic | 60.0% | |
| CATCGGATCAATCGGCCAGG+CGG | + | chr1_2:37972622-37972641 | Msa0069520:intron | 60.0% | |
| ATCGGATCAATCGGCCAGGC+GGG | + | chr1_2:37972623-37972642 | Msa0069520:intron | 60.0% | |
| TCATCTTCTGGGTTCCCGCC+TGG | - | chr1_2:37972640-37972659 | None:intergenic | 60.0% | |
| GTCAACCACCCCTCTCCCAA+GGG | + | chr1_2:37972760-37972779 | Msa0069520:intron | 60.0% | |
| TCAACCACCCCTCTCCCAAG+GGG | + | chr1_2:37972761-37972780 | Msa0069520:intron | 60.0% | |
| CCTTCTCTTCCCCTTGGGAG+AGG | - | chr1_2:37972773-37972792 | None:intergenic | 60.0% | |
| CCTCTCCCAAGGGGAAGAGA+AGG | + | chr1_2:37972770-37972789 | Msa0069520:intron | 60.0% | |
| ! | TTGCTCAAAGACCGGCTCCG+GGG | + | chr1_2:37972989-37973008 | Msa0069520:intron | 60.0% |
| GCGGGCGTACTCCTTGCTTC+TGG | - | chr1_2:37972293-37972312 | None:intergenic | 65.0% | |
| CGTCAACCACCCCTCTCCCA+AGG | + | chr1_2:37972759-37972778 | Msa0069520:intron | 65.0% | |
| TCTTCCCCTTGGGAGAGGGG+TGG | - | chr1_2:37972768-37972787 | None:intergenic | 65.0% | |
| GCGGGCGTACTCCTTGCTTC+TGG | - | chr1_2:37972293-37972312 | None:intergenic | 65.0% | |
| CGTCAACCACCCCTCTCCCA+AGG | + | chr1_2:37972759-37972778 | Msa0069520:intron | 65.0% | |
| TCTTCCCCTTGGGAGAGGGG+TGG | - | chr1_2:37972768-37972787 | None:intergenic | 65.0% | |
| GGCGAAGGCCGCACGTGGAA+TGG | - | chr1_2:37972927-37972946 | None:intergenic | 70.0% | |
| TCTTCGGCGAAGGCCGCACG+TGG | - | chr1_2:37972932-37972951 | None:intergenic | 70.0% | |
| GCGGCCTTCGCCGAAGACGA+AGG | + | chr1_2:37972935-37972954 | Msa0069520:intron | 70.0% | |
| AGCTTCGCTAGCCCCGGAGC+CGG | - | chr1_2:37973003-37973022 | None:intergenic | 70.0% | |
| GGCGAAGGCCGCACGTGGAA+TGG | - | chr1_2:37972927-37972946 | None:intergenic | 70.0% | |
| TCTTCGGCGAAGGCCGCACG+TGG | - | chr1_2:37972932-37972951 | None:intergenic | 70.0% | |
| GCGGCCTTCGCCGAAGACGA+AGG | + | chr1_2:37972935-37972954 | Msa0069520:intron | 70.0% | |
| AGCTTCGCTAGCCCCGGAGC+CGG | - | chr1_2:37973003-37973022 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37972207 | 37973917 | 37972207 | ID=Msa0069520;Name=Msa0069520 |
| chr1_2 | mRNA | 37972207 | 37973917 | 37972207 | ID=Msa0069520-mRNA-1;Parent=Msa0069520;Name=Msa0069520-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|2|0|305 |
| chr1_2 | exon | 37972207 | 37972558 | 37972207 | ID=Msa0069520-mRNA-1:exon:12003;Parent=Msa0069520-mRNA-1 |
| chr1_2 | exon | 37973352 | 37973917 | 37973352 | ID=Msa0069520-mRNA-1:exon:12004;Parent=Msa0069520-mRNA-1 |
| chr1_2 | CDS | 37972207 | 37972558 | 37972207 | ID=Msa0069520-mRNA-1:cds;Parent=Msa0069520-mRNA-1 |
| chr1_2 | CDS | 37973352 | 37973917 | 37973352 | ID=Msa0069520-mRNA-1:cds;Parent=Msa0069520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
