Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070570 | XP_013468558.1 | 94.737 | 475 | 19 | 1 | 1 | 469 | 1 | 475 | 0.0 | 899 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070570 | sp|Q5WKY9|IOLC_ALKCK | 24.528 | 318 | 204 | 13 | 66 | 377 | 9 | 296 | 2.09e-14 | 77.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070570 | A0A072VWX3 | 94.737 | 475 | 19 | 1 | 1 | 469 | 1 | 475 | 0.0 | 899 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008830 | Msa0070570 | 0.803547 | 3.308633e-49 | -8.615850e-47 |
| Msa0028060 | Msa0070570 | 0.895847 | 6.495135e-76 | -8.615850e-47 |
| Msa0032400 | Msa0070570 | 0.816915 | 4.322517e-52 | -8.615850e-47 |
| Msa0048020 | Msa0070570 | 0.800519 | 1.387696e-48 | -8.615850e-47 |
| Msa0070570 | Msa0120330 | 0.821439 | 4.035384e-53 | -8.615850e-47 |
| Msa0070570 | Msa0141430 | 0.801196 | 1.009213e-48 | -8.615850e-47 |
| Msa0070570 | Msa0149620 | 0.803122 | 4.053380e-49 | -8.615850e-47 |
| Msa0070570 | Msa0168250 | 0.973335 | 2.966645e-136 | -8.615850e-47 |
| Msa0070570 | Msa0185700 | 0.808073 | 3.705326e-50 | -8.615850e-47 |
| Msa0070570 | Msa0207000 | 0.811592 | 6.483252e-51 | -8.615850e-47 |
| Msa0070570 | Msa0239660 | 0.801969 | 7.006435e-49 | -8.615850e-47 |
| Msa0070570 | Msa0267760 | 0.801604 | 8.325271e-49 | -8.615850e-47 |
| Msa0070570 | Msa0317260 | 0.807811 | 4.212092e-50 | -8.615850e-47 |
| Msa0070570 | Msa0490300 | 0.811920 | 5.500701e-51 | -8.615850e-47 |
| Msa0070570 | Msa0526710 | 0.801833 | 7.470695e-49 | -8.615850e-47 |
| Msa0070570 | Msa0527600 | 0.812145 | 4.913413e-51 | -8.615850e-47 |
| Msa0070570 | Msa0583930 | 0.801740 | 7.807168e-49 | -8.615850e-47 |
| Msa0070570 | Msa0583940 | 0.800510 | 1.393449e-48 | -8.615850e-47 |
| Msa0070570 | Msa0642650 | 0.802111 | 6.552114e-49 | -8.615850e-47 |
| Msa0070570 | Msa0707780 | 0.802348 | 5.853633e-49 | -8.615850e-47 |
| Msa0070570 | Msa0730180 | 0.806648 | 7.428414e-50 | -8.615850e-47 |
| Msa0070570 | Msa0808420 | 0.801441 | 8.991709e-49 | -8.615850e-47 |
| Msa0070570 | Msa0890250 | 0.812523 | 4.061075e-51 | -8.615850e-47 |
| Msa0070570 | Msa1271510 | 0.803840 | 2.876772e-49 | -8.615850e-47 |
| Msa0070570 | Msa1390310 | 0.805382 | 1.371177e-49 | -8.615850e-47 |
| Msa0070570 | Msa1398480 | 0.812794 | 3.543071e-51 | -8.615850e-47 |
| Msa0070570 | Msa1429830 | 0.801121 | 1.045534e-48 | -8.615850e-47 |
| Msa0070570 | Msa1442300 | 0.809968 | 1.455488e-50 | -8.615850e-47 |
| Msa0070570 | Msa1447230 | 0.804117 | 2.520019e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070570 | MtrunA17_Chr1g0184491 | 94.737 | 475 | 19 | 1 | 1 | 469 | 1 | 475 | 0.0 | 899 |
| Msa0070570 | MtrunA17_Chr2g0329451 | 26.000 | 300 | 198 | 8 | 114 | 404 | 45 | 329 | 1.41e-14 | 74.7 |
| Msa0070570 | MtrunA17_Chr1g0188291 | 24.225 | 355 | 223 | 11 | 64 | 405 | 3 | 324 | 1.77e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070570 | AT1G06730.1 | 61.576 | 406 | 148 | 3 | 62 | 462 | 79 | 481 | 0.0 | 517 |
| Msa0070570 | AT5G51830.2 | 25.786 | 318 | 203 | 9 | 102 | 405 | 43 | 341 | 2.65e-13 | 71.2 |
| Msa0070570 | AT5G51830.1 | 25.786 | 318 | 203 | 9 | 102 | 405 | 43 | 341 | 2.65e-13 | 71.2 |
| Msa0070570 | AT2G31390.1 | 26.351 | 296 | 170 | 9 | 114 | 388 | 40 | 308 | 1.02e-12 | 69.3 |
| Msa0070570 | AT3G59480.1 | 26.298 | 289 | 177 | 8 | 115 | 388 | 42 | 309 | 5.37e-12 | 67.4 |
| Msa0070570 | AT1G66430.1 | 25.796 | 314 | 201 | 10 | 102 | 402 | 85 | 379 | 9.01e-12 | 67.0 |
| Msa0070570 | AT1G06020.1 | 22.674 | 344 | 211 | 12 | 62 | 388 | 4 | 309 | 6.92e-11 | 63.9 |
Find 136 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAATTTGGGTTTGAATT+TGG | 0.095774 | 1_2:+41192790 | None:intergenic |
| GGAATCTGCCTCACCCTTTA+TGG | 0.130900 | 1_2:+41188306 | None:intergenic |
| TCCATGAAGATCGTGAATTT+TGG | 0.141116 | 1_2:-41188733 | Msa0070570:CDS |
| AGAAAGGGGATGGAGAATTT+AGG | 0.167810 | 1_2:+41192840 | None:intergenic |
| AATTGGATGAAATTGAAATT+TGG | 0.191065 | 1_2:+41192778 | None:intergenic |
| GGCACATTCTCCACTGTCTT+TGG | 0.239368 | 1_2:+41188572 | None:intergenic |
| GCAAGGATCCTGCATTTAAT+TGG | 0.252553 | 1_2:-41190768 | Msa0070570:CDS |
| TCTGGATTCTCTCAACCTTT+TGG | 0.260480 | 1_2:-41188501 | Msa0070570:three_prime_UTR |
| ATTGGATGAAATTGAAATTT+GGG | 0.266578 | 1_2:+41192779 | None:intergenic |
| GAAAGGGGATGGAGAATTTA+GGG | 0.266715 | 1_2:+41192841 | None:intergenic |
| GAGGCAGATTCCATTTCTTT+TGG | 0.276788 | 1_2:-41188295 | Msa0070570:three_prime_UTR |
| CTAATCACATCAAATGATTA+AGG | 0.295209 | 1_2:+41193013 | None:intergenic |
| CAGAAGGAAGGAAGGAATAA+AGG | 0.299964 | 1_2:+41192970 | None:intergenic |
| AGCGTGTGCACCTGCATTTA+AGG | 0.324315 | 1_2:-41189450 | Msa0070570:intron |
| GGATGGAGAATTTAGGGTTT+TGG | 0.328386 | 1_2:+41192847 | None:intergenic |
| CACATCAATCTTCTTTGATC+CGG | 0.345007 | 1_2:-41190614 | Msa0070570:CDS |
| GATGATACTGTCAGCAGTTC+TGG | 0.355643 | 1_2:-41190962 | Msa0070570:CDS |
| CACGTTGATGTTGCCACTTT+GGG | 0.356516 | 1_2:-41192677 | Msa0070570:CDS |
| TTTGTAGCTGCTATTGCATA+TGG | 0.383282 | 1_2:-41188893 | Msa0070570:CDS |
| TCCAAAATTCACGATCTTCA+TGG | 0.387406 | 1_2:+41188732 | None:intergenic |
| CGTTACTCATCCTCAGAAAC+TGG | 0.389589 | 1_2:+41190536 | None:intergenic |
| CTTGTGAACTAACCCTTCTC+TGG | 0.389639 | 1_2:-41188519 | Msa0070570:three_prime_UTR |
| AGTGGCAACATCAACGTGTT+TGG | 0.396172 | 1_2:+41192682 | None:intergenic |
| GTCTTTGGAAACTCAAGCTT+GGG | 0.400311 | 1_2:+41188587 | None:intergenic |
| TAAAGCTCTCATGGAACATT+TGG | 0.401865 | 1_2:-41192591 | Msa0070570:CDS |
| GAATCTGCCTCACCCTTTAT+GGG | 0.401912 | 1_2:+41188307 | None:intergenic |
| CATGTTGGTAATGAAATCTA+TGG | 0.407871 | 1_2:-41191046 | Msa0070570:CDS |
| AACTCTTGCCCAGCTAATAT+CGG | 0.409872 | 1_2:+41189554 | None:intergenic |
| GGATTTGATGATTTCTCTCC+TGG | 0.416073 | 1_2:-41190676 | Msa0070570:CDS |
| AGCTGGTGGGAACTGCAATA+TGG | 0.417528 | 1_2:-41191113 | Msa0070570:CDS |
| TCAGAGGCAACCTTGTCAAA+TGG | 0.421078 | 1_2:+41188617 | None:intergenic |
| ATTATGATTATGATACTTCA+TGG | 0.421920 | 1_2:-41188140 | Msa0070570:three_prime_UTR |
| ACACGTTGATGTTGCCACTT+TGG | 0.423113 | 1_2:-41192678 | Msa0070570:CDS |
| CTTATGAAACACTTCTATGC+TGG | 0.427598 | 1_2:-41190934 | Msa0070570:CDS |
| ACAGCCATGGGCTGTGGTGC+CGG | 0.437629 | 1_2:-41188809 | Msa0070570:CDS |
| TGATTATGATACTTCATGGT+TGG | 0.440881 | 1_2:-41188136 | Msa0070570:three_prime_UTR |
| CGTGGAAAGAGCCTCTCCTC+TGG | 0.440947 | 1_2:-41190586 | Msa0070570:CDS |
| GTGGCATGGTGGTGATAGAA+AGG | 0.441290 | 1_2:+41192824 | None:intergenic |
| GGCTTCCTCTCCACCTCCCA+AGG | 0.443792 | 1_2:-41192570 | Msa0070570:intron |
| ATGCAGGCTGAGTCATTAAC+TGG | 0.444307 | 1_2:-41189587 | Msa0070570:intron |
| CGGTAGGAATGTAGCATCTC+TGG | 0.451783 | 1_2:-41188789 | Msa0070570:CDS |
| CAGAGGCAACCTTGTCAAAT+GGG | 0.455291 | 1_2:+41188618 | None:intergenic |
| GCATAGAAGTGTTTCATAAG+AGG | 0.457998 | 1_2:+41190937 | None:intergenic |
| GGACTTAACTGTGTATCAAT+TGG | 0.460566 | 1_2:-41191070 | Msa0070570:CDS |
| TGAACATTGTTGACAGTGTT+GGG | 0.468406 | 1_2:-41188928 | Msa0070570:CDS |
| AGTAGGTGCGGCAACAGCCA+TGG | 0.475177 | 1_2:-41188822 | Msa0070570:CDS |
| AGGCTCTTTCCACGTGGTCC+CGG | 0.476064 | 1_2:+41190595 | None:intergenic |
| ATTTGGGTTTGAATTTGGAT+TGG | 0.476388 | 1_2:+41192795 | None:intergenic |
| ATAGGAGATCCGATATTAGC+TGG | 0.479806 | 1_2:-41189563 | Msa0070570:CDS |
| GTGATACTGAGATTGAGAAT+TGG | 0.483949 | 1_2:+41192761 | None:intergenic |
| TGTCTTTGGAAACTCAAGCT+TGG | 0.484443 | 1_2:+41188586 | None:intergenic |
| ATTGATGGCAGAGGGAAAAG+TGG | 0.486006 | 1_2:-41188201 | Msa0070570:three_prime_UTR |
| GCGGCAACAGCCATGGGCTG+TGG | 0.488054 | 1_2:-41188815 | Msa0070570:CDS |
| TTATGAAACACTTCTATGCT+GGG | 0.490537 | 1_2:-41190933 | Msa0070570:CDS |
| GAATGTAGCATCTCTGGAAA+AGG | 0.490628 | 1_2:-41188783 | Msa0070570:CDS |
| GAATTTGGATTGGAAGAAAG+TGG | 0.490661 | 1_2:+41192805 | None:intergenic |
| AGTATATTCCTTTGATGTCA+AGG | 0.491806 | 1_2:-41188341 | Msa0070570:three_prime_UTR |
| TCCTAGCCTTGCAGCTGCTA+TGG | 0.495253 | 1_2:+41191090 | None:intergenic |
| ACATCAATCTTCTTTGATCC+GGG | 0.496885 | 1_2:-41190613 | Msa0070570:CDS |
| GTGTAGAAACATTGGGAAGC+TGG | 0.501195 | 1_2:-41191130 | Msa0070570:intron |
| TGGCATGGTGGTGATAGAAA+GGG | 0.502670 | 1_2:+41192825 | None:intergenic |
| ACAGAAGGAGGCGGCAATTG+TGG | 0.503565 | 1_2:+41192623 | None:intergenic |
| TGAAGAACGTAAAGCTCTCA+TGG | 0.503803 | 1_2:-41192600 | Msa0070570:CDS |
| CAAAACCCATGTCTCTGTAA+AGG | 0.506743 | 1_2:+41190899 | None:intergenic |
| AACGCTTCTCAGCTTCGAAT+CGG | 0.508401 | 1_2:+41192709 | None:intergenic |
| TTGCTCAGCCAATTAAATGC+AGG | 0.510676 | 1_2:+41190760 | None:intergenic |
| TGAAAAGAAAGTGATAGATC+AGG | 0.511007 | 1_2:-41188699 | Msa0070570:CDS |
| GAAGGAAGGAATAAAGGAAA+GGG | 0.512979 | 1_2:+41192976 | None:intergenic |
| AATGCTAATGTATTAACCAT+TGG | 0.518610 | 1_2:+41188854 | None:intergenic |
| GATGAGGGCATTAGCATGGT+TGG | 0.522641 | 1_2:-41190998 | Msa0070570:CDS |
| CAACTTTGTCCCATTTGACA+AGG | 0.527209 | 1_2:-41188627 | Msa0070570:CDS |
| GTGAACATTGTTGACAGTGT+TGG | 0.528046 | 1_2:-41188929 | Msa0070570:CDS |
| GATAGTTAATTGATGGCAGA+GGG | 0.528077 | 1_2:-41188209 | Msa0070570:three_prime_UTR |
| TAGAGGATGAAGGAGCCAAA+AGG | 0.529520 | 1_2:+41188486 | None:intergenic |
| TGATAGTTAATTGATGGCAG+AGG | 0.530356 | 1_2:-41188210 | Msa0070570:three_prime_UTR |
| GGGCAAGAGTTGCTTAAAAG+AGG | 0.533231 | 1_2:-41189542 | Msa0070570:CDS |
| GATTCGAAGCTGAGAAGCGT+TGG | 0.533873 | 1_2:-41192707 | Msa0070570:CDS |
| TGTGTATCAATTGGTCATGT+TGG | 0.537868 | 1_2:-41191061 | Msa0070570:CDS |
| ATGAGGGCATTAGCATGGTT+GGG | 0.538624 | 1_2:-41190997 | Msa0070570:CDS |
| TGGTGGTGATAGAAAGGGGA+TGG | 0.542666 | 1_2:+41192830 | None:intergenic |
| GGAAGGAAGGAATAAAGGAA+AGG | 0.544638 | 1_2:+41192975 | None:intergenic |
| GTAGGTGCGGCAACAGCCAT+GGG | 0.545610 | 1_2:-41188821 | Msa0070570:CDS |
| GTCAGATGTGCTTCGTGATG+AGG | 0.552362 | 1_2:-41191014 | Msa0070570:CDS |
| GCTTTACGTTCTTCAACAGA+AGG | 0.552762 | 1_2:+41192608 | None:intergenic |
| GTGGAAAGAGCCTCTCCTCT+GGG | 0.556111 | 1_2:-41190585 | Msa0070570:CDS |
| GTTCTTGAGTCCCAGAGGAG+AGG | 0.557886 | 1_2:+41190575 | None:intergenic |
| CAGCTGTCAAAATATCAAGT+TGG | 0.558330 | 1_2:+41188551 | None:intergenic |
| ATTGTTGACAGTGTTGGGTG+TGG | 0.561805 | 1_2:-41188923 | Msa0070570:CDS |
| CCATGGGCTGTGGTGCCGGT+AGG | 0.567182 | 1_2:-41188805 | Msa0070570:CDS |
| TGAGAAGTTACCTTAAATGC+AGG | 0.567864 | 1_2:+41189440 | None:intergenic |
| CAGAGATGCTACATTCCTAC+CGG | 0.568773 | 1_2:+41188790 | None:intergenic |
| TTTCTAAACTCACACTGGTG+TGG | 0.570371 | 1_2:+41192914 | None:intergenic |
| TTAGCATTTGCAAATGCAGT+AGG | 0.570503 | 1_2:-41188839 | Msa0070570:CDS |
| AACACAGAGATTACCCAAAG+TGG | 0.572363 | 1_2:+41192664 | None:intergenic |
| GTATATTCCTTTGATGTCAA+GGG | 0.573530 | 1_2:-41188340 | Msa0070570:three_prime_UTR |
| TCAGATGTGCTTCGTGATGA+GGG | 0.574196 | 1_2:-41191013 | Msa0070570:CDS |
| CGTTCTTCAACAGAAGGAGG+CGG | 0.581165 | 1_2:+41192614 | None:intergenic |
| TGGTTTACTACTCTCAGTAG+TGG | 0.581346 | 1_2:-41190656 | Msa0070570:CDS |
| ATATGGCCATAGCAGCTGCA+AGG | 0.584508 | 1_2:-41191096 | Msa0070570:CDS |
| GCCATAGCAGCTGCAAGGCT+AGG | 0.584719 | 1_2:-41191091 | Msa0070570:CDS |
| GGTTGAGAGAATCCAGAGAA+GGG | 0.585048 | 1_2:+41188507 | None:intergenic |
| GTTGATCCTTTACAGAGACA+TGG | 0.587141 | 1_2:-41190905 | Msa0070570:CDS |
| TCACGAAACAGAAGGAAGGA+AGG | 0.588328 | 1_2:+41192962 | None:intergenic |
| TTACGTTCTTCAACAGAAGG+AGG | 0.588822 | 1_2:+41192611 | None:intergenic |
| CCTACCGGCACCACAGCCCA+TGG | 0.589066 | 1_2:+41188805 | None:intergenic |
| GTGGACTGTGCTGTTGAAGT+TGG | 0.589939 | 1_2:-41190637 | Msa0070570:CDS |
| GGCAAGAGTTGCTTAAAAGA+GGG | 0.592747 | 1_2:-41189541 | Msa0070570:CDS |
| ATGTTGGTAATGAAATCTAT+GGG | 0.593558 | 1_2:-41191045 | Msa0070570:CDS |
| AGGTTGAGAGAATCCAGAGA+AGG | 0.595007 | 1_2:+41188506 | None:intergenic |
| TTACAATCACCCACTTTGTG+CGG | 0.595623 | 1_2:+41189516 | None:intergenic |
| TTCTTTGATCCGGGACCACG+TGG | 0.595825 | 1_2:-41190604 | Msa0070570:CDS |
| AAGAGGGATCCGCACAAAGT+GGG | 0.597510 | 1_2:-41189525 | Msa0070570:CDS |
| TTGATCCTTTACAGAGACAT+GGG | 0.597570 | 1_2:-41190904 | Msa0070570:CDS |
| GAGCTCTTAACCAGTTTCTG+AGG | 0.600769 | 1_2:-41190546 | Msa0070570:CDS |
| GAAGGGTTAGTTCACAAGAG+TGG | 0.602989 | 1_2:+41188524 | None:intergenic |
| CCTATAACCTGCTAAAAGAG+TGG | 0.611114 | 1_2:-41188080 | Msa0070570:three_prime_UTR |
| GGCATGGTGGTGATAGAAAG+GGG | 0.611493 | 1_2:+41192826 | None:intergenic |
| TAGAAACATTGGGAAGCTGG+TGG | 0.613030 | 1_2:-41191127 | Msa0070570:CDS |
| GCTGAGTCATTAACTGGCAT+AGG | 0.613196 | 1_2:-41189581 | Msa0070570:CDS |
| ATAAACCTTGGGAGGTGGAG+AGG | 0.615378 | 1_2:+41192565 | None:intergenic |
| TAGGAGATCCGATATTAGCT+GGG | 0.616829 | 1_2:-41189562 | Msa0070570:CDS |
| TCGTGATGAGGGCATTAGCA+TGG | 0.620050 | 1_2:-41191002 | Msa0070570:CDS |
| CTGTTGTTCTTGAGTCCCAG+AGG | 0.629490 | 1_2:+41190570 | None:intergenic |
| AAAGAGGGATCCGCACAAAG+TGG | 0.631344 | 1_2:-41189526 | Msa0070570:CDS |
| GCTTGAGTTTCCAAAGACAG+TGG | 0.639689 | 1_2:-41188582 | Msa0070570:CDS |
| ATTTGCAAATGCAGTAGGTG+CGG | 0.643035 | 1_2:-41188834 | Msa0070570:CDS |
| AGAAACATTGGGAAGCTGGT+GGG | 0.649654 | 1_2:-41191126 | Msa0070570:CDS |
| GTGGATGGAACTGAGAGGAG+AGG | 0.656061 | 1_2:+41192872 | None:intergenic |
| TGGATTGGAAGAAAGTGGCA+TGG | 0.661591 | 1_2:+41192810 | None:intergenic |
| TCTGCCTCACCCTTTATGGG+AGG | 0.671021 | 1_2:+41188310 | None:intergenic |
| TCTTCTTCTAACATCTGACG+AGG | 0.678328 | 1_2:-41190512 | Msa0070570:intron |
| AAGCTTGGGCAAGAGCTCAG+AGG | 0.678959 | 1_2:+41188601 | None:intergenic |
| ACTACTGAGAGTAGTAAACC+AGG | 0.679000 | 1_2:+41190658 | None:intergenic |
| ATTGGAAGAAAGTGGCATGG+TGG | 0.690982 | 1_2:+41192813 | None:intergenic |
| GAGGAGAGGCTCTTTCCACG+TGG | 0.712337 | 1_2:+41190589 | None:intergenic |
| TGGTGGTGGATGGAACTGAG+AGG | 0.713610 | 1_2:+41192867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATTGAAAAACA+AGG | - | chr1_2:41188909-41188928 | Msa0070570:CDS | 10.0% |
| !! | TTATATATATTCTGTTTATA+AGG | - | chr1_2:41190856-41190875 | Msa0070570:intron | 10.0% |
| !! | TTACTTAATCTTAAAATAAA+TGG | - | chr1_2:41191319-41191338 | Msa0070570:intron | 10.0% |
| !!! | CTTTATATTTTAAAACATAA+TGG | - | chr1_2:41191869-41191888 | Msa0070570:intron | 10.0% |
| !! | AAATAAAAAAATATTTCAGT+AGG | + | chr1_2:41191921-41191940 | None:intergenic | 10.0% |
| !!! | TAACAGTTTTGTAATTAAAA+AGG | - | chr1_2:41188932-41188951 | Msa0070570:CDS | 15.0% |
| !!! | AACAGTTTTGTAATTAAAAA+GGG | - | chr1_2:41188933-41188952 | Msa0070570:intron | 15.0% |
| !!! | TGAATAACATTTTACAATTT+CGG | + | chr1_2:41189043-41189062 | None:intergenic | 15.0% |
| !! | TTAATAGATCTAAATTTCAT+AGG | - | chr1_2:41189259-41189278 | Msa0070570:intron | 15.0% |
| !! | CAATGATAAAATTTATTCAA+GGG | - | chr1_2:41189369-41189388 | Msa0070570:intron | 15.0% |
| !! | ATTGATATTCTTCAATATAA+GGG | + | chr1_2:41189597-41189616 | None:intergenic | 15.0% |
| !!! | TTAAAGATTTTATGCTTATT+CGG | + | chr1_2:41189691-41189710 | None:intergenic | 15.0% |
| !! | ATTAGCTATTAAAAATTCAA+AGG | - | chr1_2:41190366-41190385 | Msa0070570:intron | 15.0% |
| !!! | TTTTTAAGTTCTTTTTTCTT+TGG | - | chr1_2:41190696-41190715 | Msa0070570:CDS | 15.0% |
| !!! | AAACTACAAATAACTTTTAA+AGG | + | chr1_2:41191044-41191063 | None:intergenic | 15.0% |
| !!! | ATAATTTGTCTAAAGATTAT+TGG | - | chr1_2:41191194-41191213 | Msa0070570:intron | 15.0% |
| !! | TAAATATAGAAGTGATTAAT+GGG | + | chr1_2:41191414-41191433 | None:intergenic | 15.0% |
| !! | ATAAATATAGAAGTGATTAA+TGG | + | chr1_2:41191415-41191434 | None:intergenic | 15.0% |
| !!! | CTTCTATATTTATAATTTGT+AGG | - | chr1_2:41191422-41191441 | Msa0070570:intron | 15.0% |
| !!! | ATATTTTGATAGTTAATTGA+TGG | - | chr1_2:41192869-41192888 | Msa0070570:CDS | 15.0% |
| !!! | TGAATTTCAATATTTTGAAT+AGG | - | chr1_2:41192913-41192932 | Msa0070570:five_prime_UTR | 15.0% |
| !!! | GAATTTCAATATTTTGAATA+GGG | - | chr1_2:41192914-41192933 | Msa0070570:five_prime_UTR | 15.0% |
| !! | ATTGGATGAAATTGAAATTT+GGG | + | chr1_2:41188309-41188328 | None:intergenic | 20.0% |
| !! | AATTGGATGAAATTGAAATT+TGG | + | chr1_2:41188310-41188329 | None:intergenic | 20.0% |
| !! | AACAAAACAAAAAACAATAC+AGG | + | chr1_2:41188602-41188621 | None:intergenic | 20.0% |
| !!! | ATAGCTTATGAATACAATTT+TGG | - | chr1_2:41188724-41188743 | Msa0070570:CDS | 20.0% |
| !!! | TATTATTTTTTTGTCGAGAA+AGG | + | chr1_2:41188895-41188914 | None:intergenic | 20.0% |
| !!! | ACAGTTTTGTAATTAAAAAG+GGG | - | chr1_2:41188934-41188953 | Msa0070570:intron | 20.0% |
| !!! | TGAATAAATTTTATCATTGG+AGG | + | chr1_2:41189368-41189387 | None:intergenic | 20.0% |
| !!! | CCTTGAATAAATTTTATCAT+TGG | + | chr1_2:41189371-41189390 | None:intergenic | 20.0% |
| !! | CCAATGATAAAATTTATTCA+AGG | - | chr1_2:41189368-41189387 | Msa0070570:intron | 20.0% |
| !!! | AAAATCATGAAATCTTTTGA+CGG | - | chr1_2:41189444-41189463 | Msa0070570:intron | 20.0% |
| !! | GATTGATATTCTTCAATATA+AGG | + | chr1_2:41189598-41189617 | None:intergenic | 20.0% |
| !!! | ATTTTCCCTTTAAATTGTAA+GGG | + | chr1_2:41189810-41189829 | None:intergenic | 20.0% |
| !!! | TATTTTCCCTTTAAATTGTA+AGG | + | chr1_2:41189811-41189830 | None:intergenic | 20.0% |
| !! | TTAAAATAAATGGTATGAAG+TGG | - | chr1_2:41191329-41191348 | Msa0070570:intron | 20.0% |
| !! | TTAAAATGAAATTCCAGTTT+AGG | - | chr1_2:41191808-41191827 | Msa0070570:intron | 20.0% |
| !!! | TTTAAAATATAAAGTGTCTG+TGG | + | chr1_2:41191863-41191882 | None:intergenic | 20.0% |
| !!! | TTGATAATTCCTTTGATATT+AGG | + | chr1_2:41191970-41191989 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTTGCAAAATTTA+TGG | - | chr1_2:41192055-41192074 | Msa0070570:intron | 20.0% |
| !! | GAGTTATCACAAAAATTTAA+TGG | + | chr1_2:41192096-41192115 | None:intergenic | 20.0% |
| !! | GATTTATAAATTATGTCATC+AGG | - | chr1_2:41192134-41192153 | Msa0070570:intron | 20.0% |
| !!! | TTTTATACATAATTTGCCAA+TGG | - | chr1_2:41192215-41192234 | Msa0070570:intron | 20.0% |
| !! | ATTATGATTATGATACTTCA+TGG | - | chr1_2:41192945-41192964 | Msa0070570:five_prime_UTR | 20.0% |
| !! | TTGAAATTTGGGTTTGAATT+TGG | + | chr1_2:41188298-41188317 | None:intergenic | 25.0% |
| ! | TTCAGGTAAAAATAAACCTT+GGG | + | chr1_2:41188534-41188553 | None:intergenic | 25.0% |
| ! | ATTCAGGTAAAAATAAACCT+TGG | + | chr1_2:41188535-41188554 | None:intergenic | 25.0% |
| !! | ACAGTGTTCTTGATTTTATT+CGG | - | chr1_2:41188561-41188580 | Msa0070570:exon | 25.0% |
| ! | ATTAATTCATAAGCTTGTCA+AGG | - | chr1_2:41188677-41188696 | Msa0070570:CDS | 25.0% |
| !! | TGAACAATGCTTACAATTTT+GGG | + | chr1_2:41188980-41188999 | None:intergenic | 25.0% |
| !! | TTGAACAATGCTTACAATTT+TGG | + | chr1_2:41188981-41189000 | None:intergenic | 25.0% |
| ! | ATTGCCTATTTACTCTTAAA+AGG | - | chr1_2:41189490-41189509 | Msa0070570:CDS | 25.0% |
| ! | TTGCCTATTTACTCTTAAAA+GGG | - | chr1_2:41189491-41189510 | Msa0070570:CDS | 25.0% |
| ! | TTTCGTGATTCAAATTGTAA+TGG | - | chr1_2:41189528-41189547 | Msa0070570:CDS | 25.0% |
| ! | TTAAATTGTAGTGCTAAGTT+TGG | - | chr1_2:41189707-41189726 | Msa0070570:intron | 25.0% |
| ! | ACTGACATTGTTCAATTTAA+AGG | - | chr1_2:41189741-41189760 | Msa0070570:intron | 25.0% |
| ! | AGGGAAAATATATAATGAGA+CGG | - | chr1_2:41189821-41189840 | Msa0070570:intron | 25.0% |
| !! | TCATATTTTCATGCTACAAA+TGG | - | chr1_2:41189903-41189922 | Msa0070570:intron | 25.0% |
| !!! | ATGTTGGTAATGAAATCTAT+GGG | - | chr1_2:41190040-41190059 | Msa0070570:intron | 25.0% |
| !!! | TCAAAGGTTTTGTTTTGTAA+TGG | - | chr1_2:41190382-41190401 | Msa0070570:intron | 25.0% |
| !!! | GTTTTGTTTTGTAATGGATA+TGG | - | chr1_2:41190388-41190407 | Msa0070570:intron | 25.0% |
| ! | AATATAAAGTCCTTAGCATT+AGG | + | chr1_2:41190837-41190856 | None:intergenic | 25.0% |
| ! | TTTCTCCAAGTTATATACTA+TGG | - | chr1_2:41190947-41190966 | Msa0070570:CDS | 25.0% |
| ! | AAGTACCATAGTATATAACT+TGG | + | chr1_2:41190955-41190974 | None:intergenic | 25.0% |
| ! | AAATTTCAATACACTTCACT+TGG | - | chr1_2:41191067-41191086 | Msa0070570:CDS | 25.0% |
| ! | AATTTCAATACACTTCACTT+GGG | - | chr1_2:41191068-41191087 | Msa0070570:CDS | 25.0% |
| ! | TCAAAATCATGTGAAACAAT+TGG | - | chr1_2:41191107-41191126 | Msa0070570:CDS | 25.0% |
| ! | TAAGATTAAGTAACAAGAGT+GGG | + | chr1_2:41191312-41191331 | None:intergenic | 25.0% |
| ! | TTAAGATTAAGTAACAAGAG+TGG | + | chr1_2:41191313-41191332 | None:intergenic | 25.0% |
| ! | ATTGTAAAAATGGGTCTTAA+GGG | - | chr1_2:41191585-41191604 | Msa0070570:intron | 25.0% |
| ! | AAAAAGTGACAAGTTATACT+TGG | + | chr1_2:41192011-41192030 | None:intergenic | 25.0% |
| ! | AATGCTAATGTATTAACCAT+TGG | + | chr1_2:41192234-41192253 | None:intergenic | 25.0% |
| !!! | CTGTCAAATATTTTGATGAA+TGG | - | chr1_2:41192420-41192439 | Msa0070570:intron | 25.0% |
| ! | AAAAATGAAGCCAAAAGAAA+TGG | + | chr1_2:41192803-41192822 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTCACGAAACAGA+AGG | + | chr1_2:41188134-41188153 | None:intergenic | 30.0% |
| !! | TTTGTTTTCTAAACTCACAC+TGG | + | chr1_2:41188179-41188198 | None:intergenic | 30.0% |
| ! | ATTTGGGTTTGAATTTGGAT+TGG | + | chr1_2:41188293-41188312 | None:intergenic | 30.0% |
| AGAACACTGTAATGTAATTC+AGG | + | chr1_2:41188551-41188570 | None:intergenic | 30.0% | |
| CAAAAATTTGCCAATCCAAA+CGG | - | chr1_2:41188811-41188830 | Msa0070570:CDS | 30.0% | |
| AAAAATTTGCCAATCCAAAC+GGG | - | chr1_2:41188812-41188831 | Msa0070570:CDS | 30.0% | |
| AATTAAAAAGGGGAGTGAAT+AGG | - | chr1_2:41188944-41188963 | Msa0070570:intron | 30.0% | |
| ! | GAACAATGCTTACAATTTTG+GGG | + | chr1_2:41188979-41188998 | None:intergenic | 30.0% |
| ! | AAGCATTGTTCAAATTTGTC+CGG | - | chr1_2:41188988-41189007 | Msa0070570:intron | 30.0% |
| ! | CTAATTTGCCTATGAAATGT+AGG | - | chr1_2:41189169-41189188 | Msa0070570:intron | 30.0% |
| TGATATGACCTACATTTCAT+AGG | + | chr1_2:41189180-41189199 | None:intergenic | 30.0% | |
| AGGTCATATCAATCACAAAT+TGG | - | chr1_2:41189189-41189208 | Msa0070570:intron | 30.0% | |
| AGACACAGTAATTGAATTTG+TGG | + | chr1_2:41189335-41189354 | None:intergenic | 30.0% | |
| TGCCTATTTACTCTTAAAAG+GGG | - | chr1_2:41189492-41189511 | Msa0070570:CDS | 30.0% | |
| ! | TTGCCATTTCGTAAATTTGA+GGG | + | chr1_2:41189568-41189587 | None:intergenic | 30.0% |
| ! | TTTGCCATTTCGTAAATTTG+AGG | + | chr1_2:41189569-41189588 | None:intergenic | 30.0% |
| ACTGACCCTTACAATTTAAA+GGG | - | chr1_2:41189802-41189821 | Msa0070570:intron | 30.0% | |
| ! | TTTTATTGTCTTGTATCCTG+TGG | - | chr1_2:41189926-41189945 | Msa0070570:intron | 30.0% |
| !!! | GTTTTTGGTGTAGAAACATT+GGG | - | chr1_2:41189948-41189967 | Msa0070570:intron | 30.0% |
| !! | CATGTTGGTAATGAAATCTA+TGG | - | chr1_2:41190039-41190058 | Msa0070570:intron | 30.0% |
| TTATGAAACACTTCTATGCT+GGG | - | chr1_2:41190152-41190171 | Msa0070570:intron | 30.0% | |
| GTAAAAATGATTCACTGTCA+TGG | - | chr1_2:41190212-41190231 | Msa0070570:intron | 30.0% | |
| ! | AATAGCTAATTTTGCTTCTC+TGG | + | chr1_2:41190356-41190375 | None:intergenic | 30.0% |
| AAGCAATCACAGTTCTATTA+AGG | + | chr1_2:41190632-41190651 | None:intergenic | 30.0% | |
| AATAGTAGAGGACAAATAGT+AGG | + | chr1_2:41190663-41190682 | None:intergenic | 30.0% | |
| AAGATGAAGACAGATTAACA+TGG | + | chr1_2:41190809-41190828 | None:intergenic | 30.0% | |
| ATCTTCATATCCTAATGCTA+AGG | - | chr1_2:41190824-41190843 | Msa0070570:intron | 30.0% | |
| AACACTGTATAAGGTTAAGA+AGG | + | chr1_2:41190882-41190901 | None:intergenic | 30.0% | |
| CTATGGTACTTGCATATTTA+TGG | - | chr1_2:41190964-41190983 | Msa0070570:CDS | 30.0% | |
| TTTCCCCAATAAACATGATT+TGG | - | chr1_2:41191016-41191035 | Msa0070570:CDS | 30.0% | |
| GTTCCAAATCATGTTTATTG+GGG | + | chr1_2:41191022-41191041 | None:intergenic | 30.0% | |
| GGTTCCAAATCATGTTTATT+GGG | + | chr1_2:41191023-41191042 | None:intergenic | 30.0% | |
| AGGTTCCAAATCATGTTTAT+TGG | + | chr1_2:41191024-41191043 | None:intergenic | 30.0% | |
| ACAATTGGAACAGTAGAAAA+AGG | - | chr1_2:41191122-41191141 | Msa0070570:CDS | 30.0% | |
| GGAGAATCTTTAAACTGATT+TGG | - | chr1_2:41191143-41191162 | Msa0070570:intron | 30.0% | |
| AGTGTGAATTGTGAGTTTAA+AGG | - | chr1_2:41191217-41191236 | Msa0070570:intron | 30.0% | |
| GTGTGAATTGTGAGTTTAAA+GGG | - | chr1_2:41191218-41191237 | Msa0070570:intron | 30.0% | |
| TGTGAATTGTGAGTTTAAAG+GGG | - | chr1_2:41191219-41191238 | Msa0070570:intron | 30.0% | |
| GTATGAAGTGGCAAAATTAA+GGG | - | chr1_2:41191341-41191360 | Msa0070570:intron | 30.0% | |
| !!! | GATGTTTTTTATTTGCATGC+AGG | - | chr1_2:41191482-41191501 | Msa0070570:intron | 30.0% |
| AAAGTGGGTGATTGTAAAAA+TGG | - | chr1_2:41191575-41191594 | Msa0070570:intron | 30.0% | |
| AAGTGGGTGATTGTAAAAAT+GGG | - | chr1_2:41191576-41191595 | Msa0070570:intron | 30.0% | |
| GATTGTAAAAATGGGTCTTA+AGG | - | chr1_2:41191584-41191603 | Msa0070570:intron | 30.0% | |
| CCATAATTGCAAATAATCGA+TGG | + | chr1_2:41191693-41191712 | None:intergenic | 30.0% | |
| ! | CCATCGATTATTTGCAATTA+TGG | - | chr1_2:41191690-41191709 | Msa0070570:intron | 30.0% |
| TAGCAAAGTTAAGTAGAATG+TGG | + | chr1_2:41191752-41191771 | None:intergenic | 30.0% | |
| CATTCTACTTAACTTTGCTA+CGG | - | chr1_2:41191752-41191771 | Msa0070570:intron | 30.0% | |
| TTCATTAATCTGACCTAAAC+TGG | + | chr1_2:41191824-41191843 | None:intergenic | 30.0% | |
| TTCCAACATCCTAATATCAA+AGG | - | chr1_2:41191958-41191977 | Msa0070570:intron | 30.0% | |
| TTCCTTTGATATTAGGATGT+TGG | + | chr1_2:41191963-41191982 | None:intergenic | 30.0% | |
| !! | CACTTTCTTTTCAAGAATGT+CGG | + | chr1_2:41192379-41192398 | None:intergenic | 30.0% |
| TGAAAAGAAAGTGATAGATC+AGG | - | chr1_2:41192386-41192405 | Msa0070570:intron | 30.0% | |
| !! | TTTAGACTTTTAGAGGATGA+AGG | + | chr1_2:41192612-41192631 | None:intergenic | 30.0% |
| !! | GCTTACTTTTAGACTTTTAG+AGG | + | chr1_2:41192619-41192638 | None:intergenic | 30.0% |
| !!! | TTGTTTTGAGCAAGTATATG+AGG | - | chr1_2:41192674-41192693 | Msa0070570:CDS | 30.0% |
| AGTATATTCCTTTGATGTCA+AGG | - | chr1_2:41192744-41192763 | Msa0070570:CDS | 30.0% | |
| GTATATTCCTTTGATGTCAA+GGG | - | chr1_2:41192745-41192764 | Msa0070570:CDS | 30.0% | |
| AAAAATACCCTTGACATCAA+AGG | + | chr1_2:41192755-41192774 | None:intergenic | 30.0% | |
| TGATTATGATACTTCATGGT+TGG | - | chr1_2:41192949-41192968 | Msa0070570:five_prime_UTR | 30.0% | |
| GAAGGAAGGAATAAAGGAAA+GGG | + | chr1_2:41188112-41188131 | None:intergenic | 35.0% | |
| ! | GAATTTGGATTGGAAGAAAG+TGG | + | chr1_2:41188283-41188302 | None:intergenic | 35.0% |
| GTGATACTGAGATTGAGAAT+TGG | + | chr1_2:41188327-41188346 | None:intergenic | 35.0% | |
| TAAAGCTCTCATGGAACATT+TGG | - | chr1_2:41188494-41188513 | Msa0070570:three_prime_UTR | 35.0% | |
| TAAAAATAAACCTTGGGAGG+TGG | + | chr1_2:41188528-41188547 | None:intergenic | 35.0% | |
| AGGTAAAAATAAACCTTGGG+AGG | + | chr1_2:41188531-41188550 | None:intergenic | 35.0% | |
| ! | TTCATAGGCAAATTAGCTTC+TGG | - | chr1_2:41189274-41189293 | Msa0070570:intron | 35.0% |
| !! | CTCCCCTTTTAAGAGTAAAT+AGG | + | chr1_2:41189497-41189516 | None:intergenic | 35.0% |
| AGTCCCTCAAATTTACGAAA+TGG | - | chr1_2:41189562-41189581 | Msa0070570:CDS | 35.0% | |
| GACTGACCCTTACAATTTAA+AGG | - | chr1_2:41189801-41189820 | Msa0070570:intron | 35.0% | |
| ! | TATGAAGAGCACACAAAAGT+GGG | + | chr1_2:41189888-41189907 | None:intergenic | 35.0% |
| ! | ATATGAAGAGCACACAAAAG+TGG | + | chr1_2:41189889-41189908 | None:intergenic | 35.0% |
| !!! | GGTTTTTGGTGTAGAAACAT+TGG | - | chr1_2:41189947-41189966 | Msa0070570:intron | 35.0% |
| GGACTTAACTGTGTATCAAT+TGG | - | chr1_2:41190015-41190034 | Msa0070570:intron | 35.0% | |
| TGTGTATCAATTGGTCATGT+TGG | - | chr1_2:41190024-41190043 | Msa0070570:intron | 35.0% | |
| !! | GCATAGAAGTGTTTCATAAG+AGG | + | chr1_2:41190151-41190170 | None:intergenic | 35.0% |
| CTTATGAAACACTTCTATGC+TGG | - | chr1_2:41190151-41190170 | Msa0070570:intron | 35.0% | |
| TTGATCCTTTACAGAGACAT+GGG | - | chr1_2:41190181-41190200 | Msa0070570:intron | 35.0% | |
| AAAATGATTCACTGTCATGG+TGG | - | chr1_2:41190215-41190234 | Msa0070570:intron | 35.0% | |
| CACATCAATCTTCTTTGATC+CGG | - | chr1_2:41190471-41190490 | Msa0070570:intron | 35.0% | |
| ACATCAATCTTCTTTGATCC+GGG | - | chr1_2:41190472-41190491 | Msa0070570:intron | 35.0% | |
| CAGCATATCACAAATAGTAG+AGG | + | chr1_2:41190675-41190694 | None:intergenic | 35.0% | |
| CTCTACTATTTGTGATATGC+TGG | - | chr1_2:41190673-41190692 | Msa0070570:CDS | 35.0% | |
| GTGAATTGTGAGTTTAAAGG+GGG | - | chr1_2:41191220-41191239 | Msa0070570:intron | 35.0% | |
| TGAATTGTGAGTTTAAAGGG+GGG | - | chr1_2:41191221-41191240 | Msa0070570:intron | 35.0% | |
| GTTGGACACATGTGTAAAAA+TGG | + | chr1_2:41191263-41191282 | None:intergenic | 35.0% | |
| GGTATGAAGTGGCAAAATTA+AGG | - | chr1_2:41191340-41191359 | Msa0070570:intron | 35.0% | |
| TGAGAAGTTACCTTAAATGC+AGG | + | chr1_2:41191648-41191667 | None:intergenic | 35.0% | |
| AACCATGTCAAATGTTCAGA+AGG | + | chr1_2:41191895-41191914 | None:intergenic | 35.0% | |
| ACTCTTGAGTGCAAACTAAT+TGG | - | chr1_2:41192112-41192131 | Msa0070570:intron | 35.0% | |
| TGAACATTGTTGACAGTGTT+GGG | - | chr1_2:41192157-41192176 | Msa0070570:intron | 35.0% | |
| TTTGTAGCTGCTATTGCATA+TGG | - | chr1_2:41192192-41192211 | Msa0070570:intron | 35.0% | |
| TTAGCATTTGCAAATGCAGT+AGG | - | chr1_2:41192246-41192265 | Msa0070570:intron | 35.0% | |
| ! | TCCATGAAGATCGTGAATTT+TGG | - | chr1_2:41192352-41192371 | Msa0070570:intron | 35.0% |
| TCCAAAATTCACGATCTTCA+TGG | + | chr1_2:41192356-41192375 | None:intergenic | 35.0% | |
| CAGCTGTCAAAATATCAAGT+TGG | + | chr1_2:41192537-41192556 | None:intergenic | 35.0% | |
| ! | GGTATTTTTCCTCCCATAAA+GGG | - | chr1_2:41192766-41192785 | Msa0070570:CDS | 35.0% |
| ! | TGATAGTTAATTGATGGCAG+AGG | - | chr1_2:41192875-41192894 | Msa0070570:CDS | 35.0% |
| ! | GATAGTTAATTGATGGCAGA+GGG | - | chr1_2:41192876-41192895 | Msa0070570:CDS | 35.0% |
| GGAAGGAAGGAATAAAGGAA+AGG | + | chr1_2:41188113-41188132 | None:intergenic | 40.0% | |
| CAGAAGGAAGGAAGGAATAA+AGG | + | chr1_2:41188118-41188137 | None:intergenic | 40.0% | |
| ! | GTTTTCACGAAACAGAAGGA+AGG | + | chr1_2:41188130-41188149 | None:intergenic | 40.0% |
| TTTCTAAACTCACACTGGTG+TGG | + | chr1_2:41188174-41188193 | None:intergenic | 40.0% | |
| !! | AGAATTTAGGGTTTTGGTGG+TGG | + | chr1_2:41188235-41188254 | None:intergenic | 40.0% |
| !! | TGGAGAATTTAGGGTTTTGG+TGG | + | chr1_2:41188238-41188257 | None:intergenic | 40.0% |
| !! | GGATGGAGAATTTAGGGTTT+TGG | + | chr1_2:41188241-41188260 | None:intergenic | 40.0% |
| GAAAGGGGATGGAGAATTTA+GGG | + | chr1_2:41188247-41188266 | None:intergenic | 40.0% | |
| AGAAAGGGGATGGAGAATTT+AGG | + | chr1_2:41188248-41188267 | None:intergenic | 40.0% | |
| AACACAGAGATTACCCAAAG+TGG | + | chr1_2:41188424-41188443 | None:intergenic | 40.0% | |
| TTACGTTCTTCAACAGAAGG+AGG | + | chr1_2:41188477-41188496 | None:intergenic | 40.0% | |
| GCTTTACGTTCTTCAACAGA+AGG | + | chr1_2:41188480-41188499 | None:intergenic | 40.0% | |
| TGAAGAACGTAAAGCTCTCA+TGG | - | chr1_2:41188485-41188504 | Msa0070570:three_prime_UTR | 40.0% | |
| AATACAACAATGTGCCCGTT+TGG | + | chr1_2:41188829-41188848 | None:intergenic | 40.0% | |
| AAACGGGCACATTGTTGTAT+TGG | - | chr1_2:41188828-41188847 | Msa0070570:CDS | 40.0% | |
| CATTGTTCAAATTTGTCCGG+CGG | - | chr1_2:41188991-41189010 | Msa0070570:intron | 40.0% | |
| !! | GCAGTAACTTTTGTTGTCAG+AGG | - | chr1_2:41189074-41189093 | Msa0070570:intron | 40.0% |
| ! | CAAATTAGCTTCTGGTGTGT+TGG | - | chr1_2:41189282-41189301 | Msa0070570:intron | 40.0% |
| GAATGATAGTCAGCACTGTT+TGG | + | chr1_2:41189863-41189882 | None:intergenic | 40.0% | |
| ! | GTCTTGTATCCTGTGGTTTT+TGG | - | chr1_2:41189933-41189952 | Msa0070570:intron | 40.0% |
| GTTTCTACACCAAAAACCAC+AGG | + | chr1_2:41189945-41189964 | None:intergenic | 40.0% | |
| GTTGATCCTTTACAGAGACA+TGG | - | chr1_2:41190180-41190199 | Msa0070570:intron | 40.0% | |
| CAAAACCCATGTCTCTGTAA+AGG | + | chr1_2:41190189-41190208 | None:intergenic | 40.0% | |
| !! | TACAGAGACATGGGTTTTGT+AGG | - | chr1_2:41190190-41190209 | Msa0070570:intron | 40.0% |
| CTAAAATCAGCTCGACTAGT+AGG | + | chr1_2:41190298-41190317 | None:intergenic | 40.0% | |
| !! | TAGTCGAGCTGATTTTAGCA+AGG | - | chr1_2:41190300-41190319 | Msa0070570:intron | 40.0% |
| GCAAGGATCCTGCATTTAAT+TGG | - | chr1_2:41190317-41190336 | Msa0070570:intron | 40.0% | |
| TTGCTCAGCCAATTAAATGC+AGG | + | chr1_2:41190328-41190347 | None:intergenic | 40.0% | |
| ! | GGATTTGATGATTTCTCTCC+TGG | - | chr1_2:41190409-41190428 | Msa0070570:intron | 40.0% |
| ACTACTGAGAGTAGTAAACC+AGG | + | chr1_2:41190430-41190449 | None:intergenic | 40.0% | |
| TGGTTTACTACTCTCAGTAG+TGG | - | chr1_2:41190429-41190448 | Msa0070570:intron | 40.0% | |
| TCTTCTTCTAACATCTGACG+AGG | - | chr1_2:41190573-41190592 | Msa0070570:CDS | 40.0% | |
| AACGGCAGAAACACTGTATA+AGG | + | chr1_2:41190891-41190910 | None:intergenic | 40.0% | |
| TAGTCCACAACTAAGAGGAA+CGG | + | chr1_2:41190909-41190928 | None:intergenic | 40.0% | |
| ! | TGATTTGGAGCTGTGATTGT+TGG | - | chr1_2:41191158-41191177 | Msa0070570:intron | 40.0% |
| GAATTGTGAGTTTAAAGGGG+GGG | - | chr1_2:41191222-41191241 | Msa0070570:intron | 40.0% | |
| TCAGAATGATGGTTTCACGT+TGG | + | chr1_2:41191281-41191300 | None:intergenic | 40.0% | |
| ! | GTTTTACACTGACATCCAAC+AGG | + | chr1_2:41191369-41191388 | None:intergenic | 40.0% |
| ATAGGAGATCCGATATTAGC+TGG | - | chr1_2:41191522-41191541 | Msa0070570:intron | 40.0% | |
| TAGGAGATCCGATATTAGCT+GGG | - | chr1_2:41191523-41191542 | Msa0070570:intron | 40.0% | |
| AACTCTTGCCCAGCTAATAT+CGG | + | chr1_2:41191534-41191553 | None:intergenic | 40.0% | |
| GGCAAGAGTTGCTTAAAAGA+GGG | - | chr1_2:41191544-41191563 | Msa0070570:intron | 40.0% | |
| TTACAATCACCCACTTTGTG+CGG | + | chr1_2:41191572-41191591 | None:intergenic | 40.0% | |
| GTGAACATTGTTGACAGTGT+TGG | - | chr1_2:41192156-41192175 | Msa0070570:intron | 40.0% | |
| ATTTGCAAATGCAGTAGGTG+CGG | - | chr1_2:41192251-41192270 | Msa0070570:intron | 40.0% | |
| ! | GAATGTAGCATCTCTGGAAA+AGG | - | chr1_2:41192302-41192321 | Msa0070570:intron | 40.0% |
| CAACTTTGTCCCATTTGACA+AGG | - | chr1_2:41192458-41192477 | Msa0070570:intron | 40.0% | |
| ! | GTCTTTGGAAACTCAAGCTT+GGG | + | chr1_2:41192501-41192520 | None:intergenic | 40.0% |
| ! | TGTCTTTGGAAACTCAAGCT+TGG | + | chr1_2:41192502-41192521 | None:intergenic | 40.0% |
| ! | TCTGGATTCTCTCAACCTTT+TGG | - | chr1_2:41192584-41192603 | Msa0070570:CDS | 40.0% |
| ! | GGGTATTTTTCCTCCCATAA+AGG | - | chr1_2:41192765-41192784 | Msa0070570:CDS | 40.0% |
| ! | GAGGCAGATTCCATTTCTTT+TGG | - | chr1_2:41192790-41192809 | Msa0070570:CDS | 40.0% |
| ! | CCACTCTTTTAGCAGGTTAT+AGG | + | chr1_2:41193008-41193027 | None:intergenic | 40.0% |
| CCTATAACCTGCTAAAAGAG+TGG | - | chr1_2:41193005-41193024 | Msa0070570:five_prime_UTR | 40.0% | |
| ! | TCAAACACCACTCTTTTAGC+AGG | + | chr1_2:41193015-41193034 | None:intergenic | 40.0% |
| TCACGAAACAGAAGGAAGGA+AGG | + | chr1_2:41188126-41188145 | None:intergenic | 45.0% | |
| !!! | TTTAGGGTTTTGGTGGTGGA+TGG | + | chr1_2:41188231-41188250 | None:intergenic | 45.0% |
| ! | TGGCATGGTGGTGATAGAAA+GGG | + | chr1_2:41188263-41188282 | None:intergenic | 45.0% |
| ATTGGAAGAAAGTGGCATGG+TGG | + | chr1_2:41188275-41188294 | None:intergenic | 45.0% | |
| ! | TGGATTGGAAGAAAGTGGCA+TGG | + | chr1_2:41188278-41188297 | None:intergenic | 45.0% |
| AACGCTTCTCAGCTTCGAAT+CGG | + | chr1_2:41188379-41188398 | None:intergenic | 45.0% | |
| AGTGGCAACATCAACGTGTT+TGG | + | chr1_2:41188406-41188425 | None:intergenic | 45.0% | |
| ! | ACACGTTGATGTTGCCACTT+TGG | - | chr1_2:41188407-41188426 | Msa0070570:three_prime_UTR | 45.0% |
| !! | CACGTTGATGTTGCCACTTT+GGG | - | chr1_2:41188408-41188427 | Msa0070570:three_prime_UTR | 45.0% |
| AACAATGTGCCCGTTTGGAT+TGG | + | chr1_2:41188824-41188843 | None:intergenic | 45.0% | |
| !!! | TCCGGCGGTTTTTTCCAAAT+TGG | - | chr1_2:41189006-41189025 | Msa0070570:intron | 45.0% |
| GCCAATTTGGAAAAAACCGC+CGG | + | chr1_2:41189010-41189029 | None:intergenic | 45.0% | |
| CGGAGACGTATTTGCCAATT+TGG | + | chr1_2:41189023-41189042 | None:intergenic | 45.0% | |
| ! | TGTTGTCAGAGGTGATGATG+TGG | - | chr1_2:41189085-41189104 | Msa0070570:intron | 45.0% |
| TGGTGTAGGATCGATGTTGA+TGG | - | chr1_2:41189308-41189327 | Msa0070570:intron | 45.0% | |
| GTGTAGAAACATTGGGAAGC+TGG | - | chr1_2:41189955-41189974 | Msa0070570:intron | 45.0% | |
| TAGAAACATTGGGAAGCTGG+TGG | - | chr1_2:41189958-41189977 | Msa0070570:intron | 45.0% | |
| AGAAACATTGGGAAGCTGGT+GGG | - | chr1_2:41189959-41189978 | Msa0070570:intron | 45.0% | |
| TCAGATGTGCTTCGTGATGA+GGG | - | chr1_2:41190072-41190091 | Msa0070570:intron | 45.0% | |
| !! | ATGAGGGCATTAGCATGGTT+GGG | - | chr1_2:41190088-41190107 | Msa0070570:intron | 45.0% |
| GATGATACTGTCAGCAGTTC+TGG | - | chr1_2:41190123-41190142 | Msa0070570:intron | 45.0% | |
| GAGCTCTTAACCAGTTTCTG+AGG | - | chr1_2:41190539-41190558 | Msa0070570:CDS | 45.0% | |
| CGTTACTCATCCTCAGAAAC+TGG | + | chr1_2:41190552-41190571 | None:intergenic | 45.0% | |
| ! | TCCTCTTAGTTGTGGACTAC+TGG | - | chr1_2:41190910-41190929 | Msa0070570:CDS | 45.0% |
| TCCAGTAGTCCACAACTAAG+AGG | + | chr1_2:41190914-41190933 | None:intergenic | 45.0% | |
| GCAAAATTAAGGGCTCCTGT+TGG | - | chr1_2:41191351-41191370 | Msa0070570:intron | 45.0% | |
| ATGCAGGCTGAGTCATTAAC+TGG | - | chr1_2:41191498-41191517 | Msa0070570:intron | 45.0% | |
| GCTGAGTCATTAACTGGCAT+AGG | - | chr1_2:41191504-41191523 | Msa0070570:intron | 45.0% | |
| GGGCAAGAGTTGCTTAAAAG+AGG | - | chr1_2:41191543-41191562 | Msa0070570:intron | 45.0% | |
| GGCCTTCTGAACATTTGACA+TGG | - | chr1_2:41191890-41191909 | Msa0070570:intron | 45.0% | |
| ! | ATTGTTGACAGTGTTGGGTG+TGG | - | chr1_2:41192162-41192181 | Msa0070570:intron | 45.0% |
| CAGAGATGCTACATTCCTAC+CGG | + | chr1_2:41192298-41192317 | None:intergenic | 45.0% | |
| CAGAGGCAACCTTGTCAAAT+GGG | + | chr1_2:41192470-41192489 | None:intergenic | 45.0% | |
| TCAGAGGCAACCTTGTCAAA+TGG | + | chr1_2:41192471-41192490 | None:intergenic | 45.0% | |
| GCTTGAGTTTCCAAAGACAG+TGG | - | chr1_2:41192503-41192522 | Msa0070570:intron | 45.0% | |
| !! | GAAGGGTTAGTTCACAAGAG+TGG | + | chr1_2:41192564-41192583 | None:intergenic | 45.0% |
| CTTGTGAACTAACCCTTCTC+TGG | - | chr1_2:41192566-41192585 | Msa0070570:intron | 45.0% | |
| GGTTGAGAGAATCCAGAGAA+GGG | + | chr1_2:41192581-41192600 | None:intergenic | 45.0% | |
| AGGTTGAGAGAATCCAGAGA+AGG | + | chr1_2:41192582-41192601 | None:intergenic | 45.0% | |
| TAGAGGATGAAGGAGCCAAA+AGG | + | chr1_2:41192602-41192621 | None:intergenic | 45.0% | |
| ! | TTTTCCTCCCATAAAGGGTG+AGG | - | chr1_2:41192771-41192790 | Msa0070570:CDS | 45.0% |
| GAATCTGCCTCACCCTTTAT+GGG | + | chr1_2:41192781-41192800 | None:intergenic | 45.0% | |
| ! | ATTGATGGCAGAGGGAAAAG+TGG | - | chr1_2:41192884-41192903 | Msa0070570:exon | 45.0% |
| !! | ATAATAAACAAAAAAAAAAA+AGG | + | chr1_2:41190255-41190274 | None:intergenic | 5.0% |
| ! | TGGTGGTGATAGAAAGGGGA+TGG | + | chr1_2:41188258-41188277 | None:intergenic | 50.0% |
| ! | GGCATGGTGGTGATAGAAAG+GGG | + | chr1_2:41188262-41188281 | None:intergenic | 50.0% |
| ! | GTGGCATGGTGGTGATAGAA+AGG | + | chr1_2:41188264-41188283 | None:intergenic | 50.0% |
| ! | GATTCGAAGCTGAGAAGCGT+TGG | - | chr1_2:41188378-41188397 | Msa0070570:three_prime_UTR | 50.0% |
| CGTTCTTCAACAGAAGGAGG+CGG | + | chr1_2:41188474-41188493 | None:intergenic | 50.0% | |
| ATAAACCTTGGGAGGTGGAG+AGG | + | chr1_2:41188523-41188542 | None:intergenic | 50.0% | |
| ! | TGATGATGTGGCGCGTTACT+TGG | - | chr1_2:41189097-41189116 | Msa0070570:intron | 50.0% |
| ! | AGCTTCTGGTGTGTTGGCAT+TGG | - | chr1_2:41189288-41189307 | Msa0070570:intron | 50.0% |
| !! | TGGTGTGTTGGCATTGGTGT+AGG | - | chr1_2:41189294-41189313 | Msa0070570:intron | 50.0% |
| AGCTGGTGGGAACTGCAATA+TGG | - | chr1_2:41189972-41189991 | Msa0070570:intron | 50.0% | |
| ATATGGCCATAGCAGCTGCA+AGG | - | chr1_2:41189989-41190008 | Msa0070570:intron | 50.0% | |
| GTCAGATGTGCTTCGTGATG+AGG | - | chr1_2:41190071-41190090 | Msa0070570:intron | 50.0% | |
| !! | TCGTGATGAGGGCATTAGCA+TGG | - | chr1_2:41190083-41190102 | Msa0070570:intron | 50.0% |
| !! | GATGAGGGCATTAGCATGGT+TGG | - | chr1_2:41190087-41190106 | Msa0070570:intron | 50.0% |
| ! | GTGGACTGTGCTGTTGAAGT+TGG | - | chr1_2:41190448-41190467 | Msa0070570:intron | 50.0% |
| CTGTTGTTCTTGAGTCCCAG+AGG | + | chr1_2:41190518-41190537 | None:intergenic | 50.0% | |
| TCTGCCGTTCCTCTTAGTTG+TGG | - | chr1_2:41190902-41190921 | Msa0070570:CDS | 50.0% | |
| GGGCTGACATGTCAGAATGA+TGG | + | chr1_2:41191292-41191311 | None:intergenic | 50.0% | |
| AAAGAGGGATCCGCACAAAG+TGG | - | chr1_2:41191559-41191578 | Msa0070570:intron | 50.0% | |
| AAGAGGGATCCGCACAAAGT+GGG | - | chr1_2:41191560-41191579 | Msa0070570:intron | 50.0% | |
| AGCGTGTGCACCTGCATTTA+AGG | - | chr1_2:41191635-41191654 | Msa0070570:intron | 50.0% | |
| CGGTAGGAATGTAGCATCTC+TGG | - | chr1_2:41192296-41192315 | Msa0070570:intron | 50.0% | |
| GGCACATTCTCCACTGTCTT+TGG | + | chr1_2:41192516-41192535 | None:intergenic | 50.0% | |
| GGAATCTGCCTCACCCTTTA+TGG | + | chr1_2:41192782-41192801 | None:intergenic | 50.0% | |
| GTGGATGGAACTGAGAGGAG+AGG | + | chr1_2:41188216-41188235 | None:intergenic | 55.0% | |
| !! | TGGTGGTGGATGGAACTGAG+AGG | + | chr1_2:41188221-41188240 | None:intergenic | 55.0% |
| ACAGAAGGAGGCGGCAATTG+TGG | + | chr1_2:41188465-41188484 | None:intergenic | 55.0% | |
| !! | TCCTAGCCTTGCAGCTGCTA+TGG | + | chr1_2:41189998-41190017 | None:intergenic | 55.0% |
| TTCTTTGATCCGGGACCACG+TGG | - | chr1_2:41190481-41190500 | Msa0070570:intron | 55.0% | |
| GTGGAAAGAGCCTCTCCTCT+GGG | - | chr1_2:41190500-41190519 | Msa0070570:intron | 55.0% | |
| GTTCTTGAGTCCCAGAGGAG+AGG | + | chr1_2:41190513-41190532 | None:intergenic | 55.0% | |
| AAGCTTGGGCAAGAGCTCAG+AGG | + | chr1_2:41192487-41192506 | None:intergenic | 55.0% | |
| TCTGCCTCACCCTTTATGGG+AGG | + | chr1_2:41192778-41192797 | None:intergenic | 55.0% | |
| GCCATAGCAGCTGCAAGGCT+AGG | - | chr1_2:41189994-41190013 | Msa0070570:intron | 60.0% | |
| AGGCTCTTTCCACGTGGTCC+CGG | + | chr1_2:41190493-41190512 | None:intergenic | 60.0% | |
| GAGGAGAGGCTCTTTCCACG+TGG | + | chr1_2:41190499-41190518 | None:intergenic | 60.0% | |
| CGTGGAAAGAGCCTCTCCTC+TGG | - | chr1_2:41190499-41190518 | Msa0070570:intron | 60.0% | |
| AGTAGGTGCGGCAACAGCCA+TGG | - | chr1_2:41192263-41192282 | Msa0070570:intron | 60.0% | |
| GTAGGTGCGGCAACAGCCAT+GGG | - | chr1_2:41192264-41192283 | Msa0070570:intron | 60.0% | |
| GGCTTCCTCTCCACCTCCCA+AGG | - | chr1_2:41188515-41188534 | Msa0070570:three_prime_UTR | 65.0% | |
| ! | ACAGCCATGGGCTGTGGTGC+CGG | - | chr1_2:41192276-41192295 | Msa0070570:intron | 65.0% |
| ! | GCGGCAACAGCCATGGGCTG+TGG | - | chr1_2:41192270-41192289 | Msa0070570:intron | 70.0% |
| CCTACCGGCACCACAGCCCA+TGG | + | chr1_2:41192283-41192302 | None:intergenic | 70.0% | |
| !! | CCATGGGCTGTGGTGCCGGT+AGG | - | chr1_2:41192280-41192299 | Msa0070570:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41188073 | 41193034 | 41188073 | ID=Msa0070570;Name=Msa0070570 |
| chr1_2 | mRNA | 41188073 | 41193034 | 41188073 | ID=Msa0070570-mRNA-1;Parent=Msa0070570;Name=Msa0070570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|5|492|469 |
| chr1_2 | exon | 41188073 | 41188951 | 41188073 | ID=Msa0070570-mRNA-1:exon:12568;Parent=Msa0070570-mRNA-1 |
| chr1_2 | exon | 41189451 | 41189603 | 41189451 | ID=Msa0070570-mRNA-1:exon:12567;Parent=Msa0070570-mRNA-1 |
| chr1_2 | exon | 41190513 | 41190804 | 41190513 | ID=Msa0070570-mRNA-1:exon:12566;Parent=Msa0070570-mRNA-1 |
| chr1_2 | exon | 41190896 | 41191146 | 41190896 | ID=Msa0070570-mRNA-1:exon:12565;Parent=Msa0070570-mRNA-1 |
| chr1_2 | exon | 41192571 | 41193034 | 41192571 | ID=Msa0070570-mRNA-1:exon:12564;Parent=Msa0070570-mRNA-1 |
| chr1_2 | five_prime_UTR | 41192898 | 41193034 | 41192898 | ID=Msa0070570-mRNA-1:five_prime_utr;Parent=Msa0070570-mRNA-1 |
| chr1_2 | CDS | 41192571 | 41192897 | 41192571 | ID=Msa0070570-mRNA-1:cds;Parent=Msa0070570-mRNA-1 |
| chr1_2 | CDS | 41190896 | 41191146 | 41190896 | ID=Msa0070570-mRNA-1:cds;Parent=Msa0070570-mRNA-1 |
| chr1_2 | CDS | 41190513 | 41190804 | 41190513 | ID=Msa0070570-mRNA-1:cds;Parent=Msa0070570-mRNA-1 |
| chr1_2 | CDS | 41189451 | 41189603 | 41189451 | ID=Msa0070570-mRNA-1:cds;Parent=Msa0070570-mRNA-1 |
| chr1_2 | CDS | 41188565 | 41188951 | 41188565 | ID=Msa0070570-mRNA-1:cds;Parent=Msa0070570-mRNA-1 |
| chr1_2 | three_prime_UTR | 41188073 | 41188564 | 41188073 | ID=Msa0070570-mRNA-1:three_prime_utr;Parent=Msa0070570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
