AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0583940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583940 MtrunA17_Chr6g0486531 87.815 238 8 2 1 217 779 1016 2.13e-123 374
Msa0583940 MtrunA17_Chr6g0486531 57.692 208 56 5 37 216 571 774 7.73e-62 207
Msa0583940 MtrunA17_Chr6g0484381 74.615 130 10 1 88 217 36 142 2.15e-59 184
Msa0583940 MtrunA17_Chr6g0486321 62.651 166 23 2 66 216 34 175 5.46e-57 179
Msa0583940 MtrunA17_Chr2g0299581 74.016 127 24 2 91 216 34 152 4.33e-56 176
Msa0583940 MtrunA17_Chr6g0486491 73.469 98 18 1 78 175 5 94 8.54e-40 132
Msa0583940 MtrunA17_Chr6g0460441 48.344 151 48 2 65 200 6 141 1.07e-36 125
Msa0583940 MtrunA17_Chr6g0486241 48.795 166 21 3 66 216 38 154 1.02e-34 122
Msa0583940 MtrunA17_Chr6g0486461 84.375 64 10 0 153 216 13 76 3.12e-30 107
Msa0583940 MtrunA17_Chr6g0486291 84.314 51 8 0 13 63 1 51 1.87e-23 89.0
Msa0583940 MtrunA17_Chr6g0486301 57.895 76 28 1 117 192 1033 1104 2.21e-23 97.8
Msa0583940 MtrunA17_Chr6g0486211 66.176 68 8 1 66 118 13 80 2.83e-19 79.0
Msa0583940 MtrunA17_Chr6g0486281 95.000 40 2 0 153 192 8 47 8.40e-19 76.6
Msa0583940 MtrunA17_Chr6g0477841 84.444 45 7 0 1 45 1 45 8.99e-19 77.0
Msa0583940 MtrunA17_Chr6g0477831 48.750 80 35 1 100 173 11 90 7.56e-18 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0583940 AT4G29060.1 73.109 238 40 3 1 217 689 923 3.43e-94 295
Msa0583940 AT4G29060.1 58.824 204 61 3 37 217 482 685 4.38e-64 214
Msa0583940 AT4G29060.2 65.657 198 51 2 37 217 482 679 1.53e-75 241
Msa0583940 AT4G11120.1 41.837 98 41 2 75 157 76 172 4.91e-12 64.7

Find 46 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTCGTCACAATAGTTT+CGG 0.269335 4_2:-2780188 None:intergenic
ACACTGTCATCCTTAATAAA+AGG 0.290111 4_2:-2780325 None:intergenic
GCAAGCATACCTCAGGAAAA+AGG 0.290284 4_2:+2779952 Msa0583940:CDS
TCCTTCAGCTGCCAGTCTTC+CGG 0.299109 4_2:-2779999 None:intergenic
GTTCAACCTCGGAGAGGGTT+TGG 0.342209 4_2:+2778762 Msa0583940:CDS
TCCTTCGTCACAATAGTTTC+GGG 0.358591 4_2:-2780187 None:intergenic
TCTTTCACTGGAGTAGTTAC+CGG 0.365022 4_2:-2778838 None:intergenic
TCCTTGGCTTCTGCGGCAGC+AGG 0.372285 4_2:-2778865 None:intergenic
AAGCAGACAATTGCAACTAT+TGG 0.386183 4_2:+2778709 Msa0583940:CDS
TAAAGTGACAGTAAAGGATA+TGG 0.403790 4_2:+2778684 Msa0583940:exon
TTACTTTGGTTCAGTCTCCT+TGG 0.419163 4_2:-2778881 None:intergenic
TGCACAAACTACAGCAAAAC+CGG 0.435471 4_2:+2778819 Msa0583940:CDS
GCAGCAGGCTCCTCTTTCAC+TGG 0.443676 4_2:-2778850 None:intergenic
GCCTGCTGCCGCAGAAGCCA+AGG 0.455636 4_2:+2778864 Msa0583940:CDS
GGAAGAATCTCAAAGAGGTT+AGG 0.459157 4_2:+2780280 Msa0583940:CDS
TGAAAGTTACAAGGTTTGTT+CGG 0.466730 4_2:+2778740 Msa0583940:CDS
AGTAGTGGTCTCAGCCGCTT+TGG 0.466995 4_2:+2779844 Msa0583940:CDS
TGATAAGAAATCCGGAAGAC+TGG 0.475292 4_2:+2779988 Msa0583940:CDS
AACTGAAGGTGATCTTGAAA+AGG 0.495747 4_2:+2779928 Msa0583940:intron
CTCACTTCTGCCAACAAAGT+CGG 0.506846 4_2:-2780083 None:intergenic
TGGCAGAAGTGAGAAATTCA+AGG 0.527151 4_2:+2780093 Msa0583940:CDS
AAGTGAGAAATTCAAGGAGT+TGG 0.528224 4_2:+2780099 Msa0583940:CDS
TCATCCGCTGATAAGAAATC+CGG 0.529747 4_2:+2779980 Msa0583940:CDS
TGTTCTCGGGTTTCGAAGCA+AGG 0.537039 4_2:-2780237 None:intergenic
TACATTCACGATGCACGCAT+TGG 0.540085 4_2:+2780034 Msa0583940:CDS
AACTGTGAAACCGACTTTGT+TGG 0.542867 4_2:+2780073 Msa0583940:CDS
GAGAAAATATGAAAGTTACA+AGG 0.544236 4_2:+2778731 Msa0583940:CDS
AAGCAACTACGAGAAGAAAC+CGG 0.544505 4_2:+2779869 Msa0583940:CDS
CTGGCAGCTGAAGGAAGAAT+CGG 0.544679 4_2:+2780007 Msa0583940:CDS
AAAAGGCGCAAGCATACCTC+AGG 0.548541 4_2:+2779945 Msa0583940:CDS
ATTTCTTATCAGCGGATGAG+AGG 0.549418 4_2:-2779976 None:intergenic
GTTCGGTTCAACCTCGGAGA+GGG 0.551728 4_2:+2778757 Msa0583940:CDS
GGTAACTACTCCAGTGAAAG+AGG 0.553754 4_2:+2778840 Msa0583940:CDS
GAATGATAAAGTGACAGTAA+AGG 0.564402 4_2:+2778678 Msa0583940:five_prime_UTR
TCCGGAAGACTGGCAGCTGA+AGG 0.588358 4_2:+2779998 Msa0583940:CDS
ATGCAGGAGATCAGCAGTAG+TGG 0.589780 4_2:+2779829 Msa0583940:intron
GGGTTTGGAAAAGAAAAGCG+AGG 0.599000 4_2:+2778777 Msa0583940:CDS
TTCAGTCTCCTTGGCTTCTG+CGG 0.601937 4_2:-2778872 None:intergenic
TCCCGAAACTATTGTGACGA+AGG 0.603689 4_2:+2780186 Msa0583940:CDS
AGGTTTGTTCGGTTCAACCT+CGG 0.604002 4_2:+2778751 Msa0583940:CDS
CATTAGAGAGAAAATTGTCG+AGG 0.623126 4_2:+2780258 Msa0583940:CDS
ATTAGAGAGAAAATTGTCGA+GGG 0.630225 4_2:+2780259 Msa0583940:CDS
TCTTCCGGATTTCTTATCAG+CGG 0.630776 4_2:-2779984 None:intergenic
TGTTCGGTTCAACCTCGGAG+AGG 0.640909 4_2:+2778756 Msa0583940:CDS
TCGTAGTTGCTTAACCAAAG+CGG 0.653913 4_2:-2779858 None:intergenic
TCGAGGGAAGAATCTCAAAG+AGG 0.687349 4_2:+2780275 Msa0583940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTATTTAATTATGAAATTT+TGG + chr4_2:2778936-2778955 Msa0583940:intron 10.0%
!!! GTTATTTAATTATGAAATTT+TGG + chr4_2:2778936-2778955 Msa0583940:intron 10.0%
!! TAAAAACAAAAATGAAGTTT+GGG - chr4_2:2779081-2779100 None:intergenic 15.0%
!! TTAAAAACAAAAATGAAGTT+TGG - chr4_2:2779082-2779101 None:intergenic 15.0%
!!! ACTTCATTTTTGTTTTTAAA+AGG + chr4_2:2779083-2779102 Msa0583940:intron 15.0%
!! ATTACATATTCAATTAATCA+AGG + chr4_2:2779109-2779128 Msa0583940:intron 15.0%
!!! ATATATCATGTCAATTTTAA+TGG - chr4_2:2779177-2779196 None:intergenic 15.0%
!! AATTATGGAAATTTCATAAT+GGG - chr4_2:2779360-2779379 None:intergenic 15.0%
!! TAATTATGGAAATTTCATAA+TGG - chr4_2:2779361-2779380 None:intergenic 15.0%
!! TAAAAACAAAAATGAAGTTT+GGG - chr4_2:2779081-2779100 None:intergenic 15.0%
!! TTAAAAACAAAAATGAAGTT+TGG - chr4_2:2779082-2779101 None:intergenic 15.0%
!!! ACTTCATTTTTGTTTTTAAA+AGG + chr4_2:2779083-2779102 Msa0583940:intron 15.0%
!! ATTACATATTCAATTAATCA+AGG + chr4_2:2779109-2779128 Msa0583940:intron 15.0%
!!! ATATATCATGTCAATTTTAA+TGG - chr4_2:2779177-2779196 None:intergenic 15.0%
!! AATTATGGAAATTTCATAAT+GGG - chr4_2:2779360-2779379 None:intergenic 15.0%
!! TAATTATGGAAATTTCATAA+TGG - chr4_2:2779361-2779380 None:intergenic 15.0%
!! TTTAAAAACATCAACAATGT+TGG + chr4_2:2779055-2779074 Msa0583940:intron 20.0%
!!! TGGCTTTTAAATTAAGTTAA+AGG + chr4_2:2779316-2779335 Msa0583940:intron 20.0%
!! CATTAACTTTATGTACTAAT+TGG + chr4_2:2779409-2779428 Msa0583940:intron 20.0%
!! TTTAAAAACATCAACAATGT+TGG + chr4_2:2779055-2779074 Msa0583940:intron 20.0%
!!! TGGCTTTTAAATTAAGTTAA+AGG + chr4_2:2779316-2779335 Msa0583940:intron 20.0%
!! CATTAACTTTATGTACTAAT+TGG + chr4_2:2779409-2779428 Msa0583940:intron 20.0%
! GAGAAAATATGAAAGTTACA+AGG + chr4_2:2778731-2778750 Msa0583940:CDS 25.0%
!!! AAATTTTGGTAATTAGTACC+TGG + chr4_2:2778950-2778969 Msa0583940:intron 25.0%
! GACATGGAAAAAAAAAATCA+AGG - chr4_2:2778990-2779009 None:intergenic 25.0%
!! AAGAAATAACTAGTTTGACA+TGG - chr4_2:2779006-2779025 None:intergenic 25.0%
! GACTAATTTGACACAAAAAA+CGG + chr4_2:2779285-2779304 Msa0583940:intron 25.0%
! ACATCATTTGTAAAAAGAGT+AGG - chr4_2:2779484-2779503 None:intergenic 25.0%
!!! CCATTTTTTTCTCAAAGTTT+GGG - chr4_2:2779771-2779790 None:intergenic 25.0%
!!! TCCATTTTTTTCTCAAAGTT+TGG - chr4_2:2779772-2779791 None:intergenic 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG - chr4_2:2780254-2780273 None:intergenic 25.0%
! GAGAAAATATGAAAGTTACA+AGG + chr4_2:2778731-2778750 Msa0583940:CDS 25.0%
!!! AAATTTTGGTAATTAGTACC+TGG + chr4_2:2778950-2778969 Msa0583940:intron 25.0%
! GACATGGAAAAAAAAAATCA+AGG - chr4_2:2778990-2779009 None:intergenic 25.0%
!! AAGAAATAACTAGTTTGACA+TGG - chr4_2:2779006-2779025 None:intergenic 25.0%
! GACTAATTTGACACAAAAAA+CGG + chr4_2:2779285-2779304 Msa0583940:intron 25.0%
! ACATCATTTGTAAAAAGAGT+AGG - chr4_2:2779484-2779503 None:intergenic 25.0%
!!! CCATTTTTTTCTCAAAGTTT+GGG - chr4_2:2779771-2779790 None:intergenic 25.0%
!!! TCCATTTTTTTCTCAAAGTT+TGG - chr4_2:2779772-2779791 None:intergenic 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG - chr4_2:2780254-2780273 None:intergenic 25.0%
GAATGATAAAGTGACAGTAA+AGG + chr4_2:2778678-2778697 Msa0583940:five_prime_UTR 30.0%
TAAAGTGACAGTAAAGGATA+TGG + chr4_2:2778684-2778703 Msa0583940:exon 30.0%
! TGAAAGTTACAAGGTTTGTT+CGG + chr4_2:2778740-2778759 Msa0583940:CDS 30.0%
!! GTTGATGTTTTTAAACAACG+AGG - chr4_2:2779050-2779069 None:intergenic 30.0%
TTGACACAAAAAACGGATAA+AGG + chr4_2:2779292-2779311 Msa0583940:intron 30.0%
AAATTAAGTTAAAGGAACCC+TGG + chr4_2:2779324-2779343 Msa0583940:intron 30.0%
TGTCTACTTTGGCATAATTA+TGG - chr4_2:2779375-2779394 None:intergenic 30.0%
TGCTAAAATATTCCAGCAAT+GGG + chr4_2:2779442-2779461 Msa0583940:intron 30.0%
TGAAATCTACAAACTGTACA+AGG + chr4_2:2779522-2779541 Msa0583940:intron 30.0%
GAAATCTACAAACTGTACAA+GGG + chr4_2:2779523-2779542 Msa0583940:intron 30.0%
AGGTTAGGGTTAAAATATTC+AGG - chr4_2:2779560-2779579 None:intergenic 30.0%
! GCATTTTGTAAACTTACTAC+TGG - chr4_2:2779712-2779731 None:intergenic 30.0%
! CCCAAACTTTGAGAAAAAAA+TGG + chr4_2:2779768-2779787 Msa0583940:intron 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG - chr4_2:2780253-2780272 None:intergenic 30.0%
ATTAGAGAGAAAATTGTCGA+GGG + chr4_2:2780259-2780278 Msa0583940:CDS 30.0%
ACACTGTCATCCTTAATAAA+AGG - chr4_2:2780328-2780347 None:intergenic 30.0%
GAATGATAAAGTGACAGTAA+AGG + chr4_2:2778678-2778697 Msa0583940:five_prime_UTR 30.0%
TAAAGTGACAGTAAAGGATA+TGG + chr4_2:2778684-2778703 Msa0583940:exon 30.0%
! TGAAAGTTACAAGGTTTGTT+CGG + chr4_2:2778740-2778759 Msa0583940:CDS 30.0%
!! GTTGATGTTTTTAAACAACG+AGG - chr4_2:2779050-2779069 None:intergenic 30.0%
TTGACACAAAAAACGGATAA+AGG + chr4_2:2779292-2779311 Msa0583940:intron 30.0%
AAATTAAGTTAAAGGAACCC+TGG + chr4_2:2779324-2779343 Msa0583940:intron 30.0%
TGTCTACTTTGGCATAATTA+TGG - chr4_2:2779375-2779394 None:intergenic 30.0%
TGCTAAAATATTCCAGCAAT+GGG + chr4_2:2779442-2779461 Msa0583940:intron 30.0%
TGAAATCTACAAACTGTACA+AGG + chr4_2:2779522-2779541 Msa0583940:intron 30.0%
GAAATCTACAAACTGTACAA+GGG + chr4_2:2779523-2779542 Msa0583940:intron 30.0%
AGGTTAGGGTTAAAATATTC+AGG - chr4_2:2779560-2779579 None:intergenic 30.0%
! GCATTTTGTAAACTTACTAC+TGG - chr4_2:2779712-2779731 None:intergenic 30.0%
! CCCAAACTTTGAGAAAAAAA+TGG + chr4_2:2779768-2779787 Msa0583940:intron 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG - chr4_2:2780253-2780272 None:intergenic 30.0%
ATTAGAGAGAAAATTGTCGA+GGG + chr4_2:2780259-2780278 Msa0583940:CDS 30.0%
ACACTGTCATCCTTAATAAA+AGG - chr4_2:2780328-2780347 None:intergenic 30.0%
AAGCAGACAATTGCAACTAT+TGG + chr4_2:2778709-2778728 Msa0583940:CDS 35.0%
TCATTGAACCACACTTACTT+TGG - chr4_2:2778898-2778917 None:intergenic 35.0%
GAGGACTAACTAACTTAACA+CGG - chr4_2:2779031-2779050 None:intergenic 35.0%
CACAAAAAACGGATAAAGGA+TGG + chr4_2:2779296-2779315 Msa0583940:intron 35.0%
GTGCTAAAATATTCCAGCAA+TGG + chr4_2:2779441-2779460 Msa0583940:intron 35.0%
AGAATAACTCGAGAAGGTTA+GGG - chr4_2:2779574-2779593 None:intergenic 35.0%
AAGAATAACTCGAGAAGGTT+AGG - chr4_2:2779575-2779594 None:intergenic 35.0%
ATAGCAAGAATAACTCGAGA+AGG - chr4_2:2779580-2779599 None:intergenic 35.0%
AAATCATACAGTCACAGCTT+AGG - chr4_2:2779616-2779635 None:intergenic 35.0%
!! TGAAAGCACTGACACAAATA+CGG + chr4_2:2779651-2779670 Msa0583940:intron 35.0%
TGTAAACTTACTACTGGTGT+CGG - chr4_2:2779706-2779725 None:intergenic 35.0%
ATTGTTCAATGTTGTGATGC+AGG + chr4_2:2779813-2779832 Msa0583940:intron 35.0%
AACTGAAGGTGATCTTGAAA+AGG + chr4_2:2779928-2779947 Msa0583940:intron 35.0%
AAGTGAGAAATTCAAGGAGT+TGG + chr4_2:2780099-2780118 Msa0583940:CDS 35.0%
ATAGATACAAACTGAACCTG+TGG - chr4_2:2780157-2780176 None:intergenic 35.0%
TTCCTTCGTCACAATAGTTT+CGG - chr4_2:2780191-2780210 None:intergenic 35.0%
CATTAGAGAGAAAATTGTCG+AGG + chr4_2:2780258-2780277 Msa0583940:CDS 35.0%
!! TCTAGAGCAGCCTTTTATTA+AGG + chr4_2:2780315-2780334 Msa0583940:CDS 35.0%
AAGCAGACAATTGCAACTAT+TGG + chr4_2:2778709-2778728 Msa0583940:CDS 35.0%
TCATTGAACCACACTTACTT+TGG - chr4_2:2778898-2778917 None:intergenic 35.0%
GAGGACTAACTAACTTAACA+CGG - chr4_2:2779031-2779050 None:intergenic 35.0%
CACAAAAAACGGATAAAGGA+TGG + chr4_2:2779296-2779315 Msa0583940:intron 35.0%
GTGCTAAAATATTCCAGCAA+TGG + chr4_2:2779441-2779460 Msa0583940:intron 35.0%
AGAATAACTCGAGAAGGTTA+GGG - chr4_2:2779574-2779593 None:intergenic 35.0%
AAGAATAACTCGAGAAGGTT+AGG - chr4_2:2779575-2779594 None:intergenic 35.0%
ATAGCAAGAATAACTCGAGA+AGG - chr4_2:2779580-2779599 None:intergenic 35.0%
AAATCATACAGTCACAGCTT+AGG - chr4_2:2779616-2779635 None:intergenic 35.0%
!! TGAAAGCACTGACACAAATA+CGG + chr4_2:2779651-2779670 Msa0583940:intron 35.0%
TGTAAACTTACTACTGGTGT+CGG - chr4_2:2779706-2779725 None:intergenic 35.0%
ATTGTTCAATGTTGTGATGC+AGG + chr4_2:2779813-2779832 Msa0583940:intron 35.0%
AACTGAAGGTGATCTTGAAA+AGG + chr4_2:2779928-2779947 Msa0583940:intron 35.0%
AAGTGAGAAATTCAAGGAGT+TGG + chr4_2:2780099-2780118 Msa0583940:CDS 35.0%
ATAGATACAAACTGAACCTG+TGG - chr4_2:2780157-2780176 None:intergenic 35.0%
TTCCTTCGTCACAATAGTTT+CGG - chr4_2:2780191-2780210 None:intergenic 35.0%
CATTAGAGAGAAAATTGTCG+AGG + chr4_2:2780258-2780277 Msa0583940:CDS 35.0%
!! TCTAGAGCAGCCTTTTATTA+AGG + chr4_2:2780315-2780334 Msa0583940:CDS 35.0%
TGCACAAACTACAGCAAAAC+CGG + chr4_2:2778819-2778838 Msa0583940:CDS 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - chr4_2:2778841-2778860 None:intergenic 40.0%
! TTACTTTGGTTCAGTCTCCT+TGG - chr4_2:2778884-2778903 None:intergenic 40.0%
AGACTGAACCAAAGTAAGTG+TGG + chr4_2:2778887-2778906 Msa0583940:intron 40.0%
TAGTACCTGGAGTTTCAAAC+AGG + chr4_2:2778963-2778982 Msa0583940:intron 40.0%
TAATGGGAAAAACGACACCA+GGG - chr4_2:2779344-2779363 None:intergenic 40.0%
! ATAATGGGAAAAACGACACC+AGG - chr4_2:2779345-2779364 None:intergenic 40.0%
ATGCCAAAGTAGACACTTCT+TGG + chr4_2:2779380-2779399 Msa0583940:intron 40.0%
TCGTAGTTGCTTAACCAAAG+CGG - chr4_2:2779861-2779880 None:intergenic 40.0%
AAGCAACTACGAGAAGAAAC+CGG + chr4_2:2779869-2779888 Msa0583940:CDS 40.0%
ATCACCTTCAGTTTCAGCAA+GGG - chr4_2:2779921-2779940 None:intergenic 40.0%
CAAGCATACCTCAGGAAAAA+GGG + chr4_2:2779953-2779972 Msa0583940:CDS 40.0%
ATTTCTTATCAGCGGATGAG+AGG - chr4_2:2779979-2779998 None:intergenic 40.0%
TCATCCGCTGATAAGAAATC+CGG + chr4_2:2779980-2779999 Msa0583940:CDS 40.0%
TCTTCCGGATTTCTTATCAG+CGG - chr4_2:2779987-2780006 None:intergenic 40.0%
TGATAAGAAATCCGGAAGAC+TGG + chr4_2:2779988-2780007 Msa0583940:CDS 40.0%
! AACTGTGAAACCGACTTTGT+TGG + chr4_2:2780073-2780092 Msa0583940:CDS 40.0%
TGGCAGAAGTGAGAAATTCA+AGG + chr4_2:2780093-2780112 Msa0583940:CDS 40.0%
TCCTTCGTCACAATAGTTTC+GGG - chr4_2:2780190-2780209 None:intergenic 40.0%
GGAAGAATCTCAAAGAGGTT+AGG + chr4_2:2780280-2780299 Msa0583940:CDS 40.0%
TGCACAAACTACAGCAAAAC+CGG + chr4_2:2778819-2778838 Msa0583940:CDS 40.0%
TCTTTCACTGGAGTAGTTAC+CGG - chr4_2:2778841-2778860 None:intergenic 40.0%
! TTACTTTGGTTCAGTCTCCT+TGG - chr4_2:2778884-2778903 None:intergenic 40.0%
AGACTGAACCAAAGTAAGTG+TGG + chr4_2:2778887-2778906 Msa0583940:intron 40.0%
TAGTACCTGGAGTTTCAAAC+AGG + chr4_2:2778963-2778982 Msa0583940:intron 40.0%
TAATGGGAAAAACGACACCA+GGG - chr4_2:2779344-2779363 None:intergenic 40.0%
! ATAATGGGAAAAACGACACC+AGG - chr4_2:2779345-2779364 None:intergenic 40.0%
ATGCCAAAGTAGACACTTCT+TGG + chr4_2:2779380-2779399 Msa0583940:intron 40.0%
TCGTAGTTGCTTAACCAAAG+CGG - chr4_2:2779861-2779880 None:intergenic 40.0%
AAGCAACTACGAGAAGAAAC+CGG + chr4_2:2779869-2779888 Msa0583940:CDS 40.0%
ATCACCTTCAGTTTCAGCAA+GGG - chr4_2:2779921-2779940 None:intergenic 40.0%
CAAGCATACCTCAGGAAAAA+GGG + chr4_2:2779953-2779972 Msa0583940:CDS 40.0%
ATTTCTTATCAGCGGATGAG+AGG - chr4_2:2779979-2779998 None:intergenic 40.0%
TCATCCGCTGATAAGAAATC+CGG + chr4_2:2779980-2779999 Msa0583940:CDS 40.0%
TCTTCCGGATTTCTTATCAG+CGG - chr4_2:2779987-2780006 None:intergenic 40.0%
TGATAAGAAATCCGGAAGAC+TGG + chr4_2:2779988-2780007 Msa0583940:CDS 40.0%
! AACTGTGAAACCGACTTTGT+TGG + chr4_2:2780073-2780092 Msa0583940:CDS 40.0%
TGGCAGAAGTGAGAAATTCA+AGG + chr4_2:2780093-2780112 Msa0583940:CDS 40.0%
TCCTTCGTCACAATAGTTTC+GGG - chr4_2:2780190-2780209 None:intergenic 40.0%
GGAAGAATCTCAAAGAGGTT+AGG + chr4_2:2780280-2780299 Msa0583940:CDS 40.0%
! AGGTTTGTTCGGTTCAACCT+CGG + chr4_2:2778751-2778770 Msa0583940:CDS 45.0%
GGGTTTGGAAAAGAAAAGCG+AGG + chr4_2:2778777-2778796 Msa0583940:CDS 45.0%
GGTAACTACTCCAGTGAAAG+AGG + chr4_2:2778840-2778859 Msa0583940:CDS 45.0%
! AAGGACCTGTTTGAAACTCC+AGG - chr4_2:2778971-2778990 None:intergenic 45.0%
! CTGACCTTGTTGTCAACGAA+AGG + chr4_2:2779217-2779236 Msa0583940:intron 45.0%
! TTGGCCTTTCGTTGACAACA+AGG - chr4_2:2779224-2779243 None:intergenic 45.0%
TGTCAACGAAAGGCCAATTG+TGG + chr4_2:2779227-2779246 Msa0583940:intron 45.0%
!! AGGCCAATTGTGGTACTGAT+CGG + chr4_2:2779237-2779256 Msa0583940:intron 45.0%
TCACCGATCAGTACCACAAT+TGG - chr4_2:2779243-2779262 None:intergenic 45.0%
!! TCGCCAAGAAGTGTCTACTT+TGG - chr4_2:2779386-2779405 None:intergenic 45.0%
TGAGAAATGCAACCCATTGC+TGG - chr4_2:2779457-2779476 None:intergenic 45.0%
AAAGCCCTTGCTGAAACTGA+AGG + chr4_2:2779914-2779933 Msa0583940:intron 45.0%
GATCACCTTCAGTTTCAGCA+AGG - chr4_2:2779922-2779941 None:intergenic 45.0%
GCAAGCATACCTCAGGAAAA+AGG + chr4_2:2779952-2779971 Msa0583940:CDS 45.0%
TACATTCACGATGCACGCAT+TGG + chr4_2:2780034-2780053 Msa0583940:CDS 45.0%
CTCACTTCTGCCAACAAAGT+CGG - chr4_2:2780086-2780105 None:intergenic 45.0%
TCCCGAAACTATTGTGACGA+AGG + chr4_2:2780186-2780205 Msa0583940:CDS 45.0%
TCGAGGGAAGAATCTCAAAG+AGG + chr4_2:2780275-2780294 Msa0583940:CDS 45.0%
! AGGTTTGTTCGGTTCAACCT+CGG + chr4_2:2778751-2778770 Msa0583940:CDS 45.0%
GGGTTTGGAAAAGAAAAGCG+AGG + chr4_2:2778777-2778796 Msa0583940:CDS 45.0%
GGTAACTACTCCAGTGAAAG+AGG + chr4_2:2778840-2778859 Msa0583940:CDS 45.0%
! AAGGACCTGTTTGAAACTCC+AGG - chr4_2:2778971-2778990 None:intergenic 45.0%
! CTGACCTTGTTGTCAACGAA+AGG + chr4_2:2779217-2779236 Msa0583940:intron 45.0%
! TTGGCCTTTCGTTGACAACA+AGG - chr4_2:2779224-2779243 None:intergenic 45.0%
TGTCAACGAAAGGCCAATTG+TGG + chr4_2:2779227-2779246 Msa0583940:intron 45.0%
!! AGGCCAATTGTGGTACTGAT+CGG + chr4_2:2779237-2779256 Msa0583940:intron 45.0%
TCACCGATCAGTACCACAAT+TGG - chr4_2:2779243-2779262 None:intergenic 45.0%
!! TCGCCAAGAAGTGTCTACTT+TGG - chr4_2:2779386-2779405 None:intergenic 45.0%
TGAGAAATGCAACCCATTGC+TGG - chr4_2:2779457-2779476 None:intergenic 45.0%
AAAGCCCTTGCTGAAACTGA+AGG + chr4_2:2779914-2779933 Msa0583940:intron 45.0%
GATCACCTTCAGTTTCAGCA+AGG - chr4_2:2779922-2779941 None:intergenic 45.0%
GCAAGCATACCTCAGGAAAA+AGG + chr4_2:2779952-2779971 Msa0583940:CDS 45.0%
TACATTCACGATGCACGCAT+TGG + chr4_2:2780034-2780053 Msa0583940:CDS 45.0%
CTCACTTCTGCCAACAAAGT+CGG - chr4_2:2780086-2780105 None:intergenic 45.0%
TCCCGAAACTATTGTGACGA+AGG + chr4_2:2780186-2780205 Msa0583940:CDS 45.0%
TCGAGGGAAGAATCTCAAAG+AGG + chr4_2:2780275-2780294 Msa0583940:CDS 45.0%
! TCTTTTCCAAACCCTCTCCG+AGG - chr4_2:2778771-2778790 None:intergenic 50.0%
TTCAGTCTCCTTGGCTTCTG+CGG - chr4_2:2778875-2778894 None:intergenic 50.0%
ATGCAGGAGATCAGCAGTAG+TGG + chr4_2:2779829-2779848 Msa0583940:intron 50.0%
TACGAGAAGAAACCGGTGCA+GGG + chr4_2:2779876-2779895 Msa0583940:intron 50.0%
! AAAAGGCGCAAGCATACCTC+AGG + chr4_2:2779945-2779964 Msa0583940:CDS 50.0%
! ATGAGAGGCCCTTTTTCCTG+AGG - chr4_2:2779964-2779983 None:intergenic 50.0%
CTGGCAGCTGAAGGAAGAAT+CGG + chr4_2:2780007-2780026 Msa0583940:CDS 50.0%
TGTTCTCGGGTTTCGAAGCA+AGG - chr4_2:2780240-2780259 None:intergenic 50.0%
! TCTTTTCCAAACCCTCTCCG+AGG - chr4_2:2778771-2778790 None:intergenic 50.0%
TTCAGTCTCCTTGGCTTCTG+CGG - chr4_2:2778875-2778894 None:intergenic 50.0%
ATGCAGGAGATCAGCAGTAG+TGG + chr4_2:2779829-2779848 Msa0583940:intron 50.0%
TACGAGAAGAAACCGGTGCA+GGG + chr4_2:2779876-2779895 Msa0583940:intron 50.0%
! AAAAGGCGCAAGCATACCTC+AGG + chr4_2:2779945-2779964 Msa0583940:CDS 50.0%
! ATGAGAGGCCCTTTTTCCTG+AGG - chr4_2:2779964-2779983 None:intergenic 50.0%
CTGGCAGCTGAAGGAAGAAT+CGG + chr4_2:2780007-2780026 Msa0583940:CDS 50.0%
TGTTCTCGGGTTTCGAAGCA+AGG - chr4_2:2780240-2780259 None:intergenic 50.0%
TGTTCGGTTCAACCTCGGAG+AGG + chr4_2:2778756-2778775 Msa0583940:CDS 55.0%
GTTCGGTTCAACCTCGGAGA+GGG + chr4_2:2778757-2778776 Msa0583940:CDS 55.0%
GTTCAACCTCGGAGAGGGTT+TGG + chr4_2:2778762-2778781 Msa0583940:CDS 55.0%
AGTAGTGGTCTCAGCCGCTT+TGG + chr4_2:2779844-2779863 Msa0583940:CDS 55.0%
CTACGAGAAGAAACCGGTGC+AGG + chr4_2:2779875-2779894 Msa0583940:intron 55.0%
AGAAACCGGTGCAGGGATGA+TGG + chr4_2:2779883-2779902 Msa0583940:intron 55.0%
ACAGTCCATCATCCCTGCAC+CGG - chr4_2:2779891-2779910 None:intergenic 55.0%
TCCTTCAGCTGCCAGTCTTC+CGG - chr4_2:2780002-2780021 None:intergenic 55.0%
! GCAAGTTGCTGCTTGTCCAC+AGG + chr4_2:2780138-2780157 Msa0583940:intron 55.0%
TGTTCGGTTCAACCTCGGAG+AGG + chr4_2:2778756-2778775 Msa0583940:CDS 55.0%
GTTCGGTTCAACCTCGGAGA+GGG + chr4_2:2778757-2778776 Msa0583940:CDS 55.0%
GTTCAACCTCGGAGAGGGTT+TGG + chr4_2:2778762-2778781 Msa0583940:CDS 55.0%
AGTAGTGGTCTCAGCCGCTT+TGG + chr4_2:2779844-2779863 Msa0583940:CDS 55.0%
CTACGAGAAGAAACCGGTGC+AGG + chr4_2:2779875-2779894 Msa0583940:intron 55.0%
AGAAACCGGTGCAGGGATGA+TGG + chr4_2:2779883-2779902 Msa0583940:intron 55.0%
ACAGTCCATCATCCCTGCAC+CGG - chr4_2:2779891-2779910 None:intergenic 55.0%
TCCTTCAGCTGCCAGTCTTC+CGG - chr4_2:2780002-2780021 None:intergenic 55.0%
! GCAAGTTGCTGCTTGTCCAC+AGG + chr4_2:2780138-2780157 Msa0583940:intron 55.0%
GCAGCAGGCTCCTCTTTCAC+TGG - chr4_2:2778853-2778872 None:intergenic 60.0%
TCCGGAAGACTGGCAGCTGA+AGG + chr4_2:2779998-2780017 Msa0583940:CDS 60.0%
GCAGCAGGCTCCTCTTTCAC+TGG - chr4_2:2778853-2778872 None:intergenic 60.0%
TCCGGAAGACTGGCAGCTGA+AGG + chr4_2:2779998-2780017 Msa0583940:CDS 60.0%
TCCTTGGCTTCTGCGGCAGC+AGG - chr4_2:2778868-2778887 None:intergenic 65.0%
TCCTTGGCTTCTGCGGCAGC+AGG - chr4_2:2778868-2778887 None:intergenic 65.0%
GCCTGCTGCCGCAGAAGCCA+AGG + chr4_2:2778864-2778883 Msa0583940:CDS 70.0%
GCCTGCTGCCGCAGAAGCCA+AGG + chr4_2:2778864-2778883 Msa0583940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 2778674 2780351 2778674 ID=Msa0583940;Name=Msa0583940
chr4_2 mRNA 2778674 2780351 2778674 ID=Msa0583940-mRNA-1;Parent=Msa0583940;Name=Msa0583940-mRNA-1;_AED=0.46;_eAED=0.46;_QI=29|0.33|0.25|1|0.33|0.25|4|0|217
chr4_2 exon 2778674 2778899 2778674 ID=Msa0583940-mRNA-1:exon:832;Parent=Msa0583940-mRNA-1
chr4_2 exon 2779835 2779890 2779835 ID=Msa0583940-mRNA-1:exon:833;Parent=Msa0583940-mRNA-1
chr4_2 exon 2779936 2780141 2779936 ID=Msa0583940-mRNA-1:exon:834;Parent=Msa0583940-mRNA-1
chr4_2 exon 2780160 2780351 2780160 ID=Msa0583940-mRNA-1:exon:835;Parent=Msa0583940-mRNA-1
chr4_2 five_prime_UTR 2778674 2778702 2778674 ID=Msa0583940-mRNA-1:five_prime_utr;Parent=Msa0583940-mRNA-1
chr4_2 CDS 2778703 2778899 2778703 ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2 CDS 2779835 2779890 2779835 ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2 CDS 2779936 2780141 2779936 ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2 CDS 2780160 2780351 2780160 ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
Gene Sequence

>Msa0583940

ATGGTTAAGCAGACAATTGCAACTATTGGAGAAAATATGAAAGTTACAAGGTTTGTTCGGTTCAACCTCGGAGAGGGTTTGGAAAAGAAAAGCGAGGATTTTGCTGCTGAAGTCGCTGCACAAACTACAGCAAAACCGGTAACTACTCCAGTGAAAGAGGAGCCTGCTGCCGCAGAAGCCAAGGAGACTGAACCAAAGAGATCAGCAGTAGTGGTCTCAGCCGCTTTGGTTAAGCAACTACGAGAAGAAACCGGTGATCTTGAAAAGGCGCAAGCATACCTCAGGAAAAAGGGCCTCTCATCCGCTGATAAGAAATCCGGAAGACTGGCAGCTGAAGGAAGAATCGGTACATACATTCACGATGCACGCATTGGTGTTCTAATTGAAGTGAACTGTGAAACCGACTTTGTTGGCAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTATTGTGACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCGAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGAATCTCAAAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGACAGTGTTATA

Protein sequence

>Msa0583940

MVKQTIATIGENMKVTRFVRFNLGEGLEKKSEDFAAEVAAQTTAKPVTTPVKEEPAAAEAKETEPKRSAVVVSAALVKQLREETGDLEKAQAYLRKKGLSSADKKSGRLAAEGRIGTYIHDARIGVLIEVNCETDFVGRSEKFKELVDDLAMQVQFVSIEDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGELALLEQPFIKDDSVI