AlfalfaGEDB | Msa0583940

M. sativa cultivar zhongmu-4 / Msa0583940

KEGG: K02357
GO: -
PFAM: PF00889.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583940	XP_039682652.1	57.692	208	56	5	37	216	550	753	7.27e-58	207
Msa0583940	XP_039682652.1	87.815	238	8	2	1	217	758	995	1.54e-119	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583940	sp\|Q9SZD6\|PETS_ARATH	73.109	238	40	3	1	217	689	923	3.37e-93	295
Msa0583940	sp\|Q9SZD6\|PETS_ARATH	58.824	204	61	3	37	217	482	685	4.31e-63	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583940	A0A5B6YJE2	75.000	48	12	0	170	217	1	48	1.31e-12	76.3
Msa0583940	A0A5B6YJE2	77.731	238	32	2	1	217	52	289	7.03e-123	360

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0583940	0.858070	1.060025e-62	-8.615850e-47
Msa0001460	Msa0583940	0.878926	1.890438e-69	-8.615850e-47
Msa0001950	Msa0583940	0.847515	1.101649e-59	-8.615850e-47
Msa0003470	Msa0583940	0.836613	8.443468e-57	-8.615850e-47
Msa0006700	Msa0583940	0.834014	3.828252e-56	-8.615850e-47
Msa0007230	Msa0583940	0.834815	2.409675e-56	-8.615850e-47
Msa0008850	Msa0583940	0.860280	2.305456e-63	-8.615850e-47
Msa0011180	Msa0583940	0.844245	8.518374e-59	-8.615850e-47
Msa0011720	Msa0583940	0.842190	3.009058e-58	-8.615850e-47
Msa0012460	Msa0583940	0.822213	2.671107e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583940	MtrunA17_Chr6g0486531	87.815	238	8	2	1	217	779	1016	2.13e-123	374
Msa0583940	MtrunA17_Chr6g0486531	57.692	208	56	5	37	216	571	774	7.73e-62	207
Msa0583940	MtrunA17_Chr6g0484381	74.615	130	10	1	88	217	36	142	2.15e-59	184
Msa0583940	MtrunA17_Chr6g0486321	62.651	166	23	2	66	216	34	175	5.46e-57	179
Msa0583940	MtrunA17_Chr2g0299581	74.016	127	24	2	91	216	34	152	4.33e-56	176
Msa0583940	MtrunA17_Chr6g0486491	73.469	98	18	1	78	175	5	94	8.54e-40	132
Msa0583940	MtrunA17_Chr6g0460441	48.344	151	48	2	65	200	6	141	1.07e-36	125
Msa0583940	MtrunA17_Chr6g0486241	48.795	166	21	3	66	216	38	154	1.02e-34	122
Msa0583940	MtrunA17_Chr6g0486461	84.375	64	10	0	153	216	13	76	3.12e-30	107
Msa0583940	MtrunA17_Chr6g0486291	84.314	51	8	0	13	63	1	51	1.87e-23	89.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0583940	AT4G29060.1	73.109	238	40	3	1	217	689	923	3.43e-94	295
Msa0583940	AT4G29060.1	58.824	204	61	3	37	217	482	685	4.38e-64	214
Msa0583940	AT4G29060.2	65.657	198	51	2	37	217	482	679	1.53e-75	241
Msa0583940	AT4G11120.1	41.837	98	41	2	75	157	76	172	4.91e-12	64.7

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Find 46 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCGCAAGCATACCTC+AGG	0.548541	4_2:+2779945	Msa0583940:CDS
AACTGAAGGTGATCTTGAAA+AGG	0.495747	4_2:+2779928	Msa0583940:intron
AACTGTGAAACCGACTTTGT+TGG	0.542867	4_2:+2780073	Msa0583940:CDS
AAGCAACTACGAGAAGAAAC+CGG	0.544505	4_2:+2779869	Msa0583940:CDS
AAGCAGACAATTGCAACTAT+TGG	0.386183	4_2:+2778709	Msa0583940:CDS
AAGTGAGAAATTCAAGGAGT+TGG	0.528224	4_2:+2780099	Msa0583940:CDS
ACACTGTCATCCTTAATAAA+AGG	0.290111	4_2:-2780325	None:intergenic
AGGTTTGTTCGGTTCAACCT+CGG	0.604002	4_2:+2778751	Msa0583940:CDS
AGTAGTGGTCTCAGCCGCTT+TGG	0.466995	4_2:+2779844	Msa0583940:CDS
ATGCAGGAGATCAGCAGTAG+TGG	0.589780	4_2:+2779829	Msa0583940:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGATAAAGTGACAGTAA+AGG	+	chr4_2:2778678-2778697	Msa0583940:five_prime_UTR	30.0%
TAAAGTGACAGTAAAGGATA+TGG	+	chr4_2:2778684-2778703	Msa0583940:exon	30.0%
TTGACACAAAAAACGGATAA+AGG	+	chr4_2:2779292-2779311	Msa0583940:intron	30.0%
AAATTAAGTTAAAGGAACCC+TGG	+	chr4_2:2779324-2779343	Msa0583940:intron	30.0%
TGTCTACTTTGGCATAATTA+TGG	-	chr4_2:2779375-2779394	None:intergenic	30.0%
TGCTAAAATATTCCAGCAAT+GGG	+	chr4_2:2779442-2779461	Msa0583940:intron	30.0%
TGAAATCTACAAACTGTACA+AGG	+	chr4_2:2779522-2779541	Msa0583940:intron	30.0%
GAAATCTACAAACTGTACAA+GGG	+	chr4_2:2779523-2779542	Msa0583940:intron	30.0%
AGGTTAGGGTTAAAATATTC+AGG	-	chr4_2:2779560-2779579	None:intergenic	30.0%
ATTAGAGAGAAAATTGTCGA+GGG	+	chr4_2:2780259-2780278	Msa0583940:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	2778674	2780351	2778674	ID=Msa0583940;Name=Msa0583940
chr4_2	mRNA	2778674	2780351	2778674	ID=Msa0583940-mRNA-1;Parent=Msa0583940;Name=Msa0583940-mRNA-1;_AED=0.46;_eAED=0.46;_QI=29\|0.33\|0.25\|1\|0.33\|0.25\|4\|0\|217
chr4_2	exon	2778674	2778899	2778674	ID=Msa0583940-mRNA-1:exon:832;Parent=Msa0583940-mRNA-1
chr4_2	exon	2779835	2779890	2779835	ID=Msa0583940-mRNA-1:exon:833;Parent=Msa0583940-mRNA-1
chr4_2	exon	2779936	2780141	2779936	ID=Msa0583940-mRNA-1:exon:834;Parent=Msa0583940-mRNA-1
chr4_2	exon	2780160	2780351	2780160	ID=Msa0583940-mRNA-1:exon:835;Parent=Msa0583940-mRNA-1
chr4_2	five_prime_UTR	2778674	2778702	2778674	ID=Msa0583940-mRNA-1:five_prime_utr;Parent=Msa0583940-mRNA-1
chr4_2	CDS	2778703	2778899	2778703	ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2	CDS	2779835	2779890	2779835	ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2	CDS	2779936	2780141	2779936	ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1
chr4_2	CDS	2780160	2780351	2780160	ID=Msa0583940-mRNA-1:cds;Parent=Msa0583940-mRNA-1

Gene Sequence

>Msa0583940

ATGGTTAAGCAGACAATTGCAACTATTGGAGAAAATATGAAAGTTACAAGGTTTGTTCGGTTCAACCTCGGAGAGGGTTTGGAAAAGAAAAGCGAGGATTTTGCTGCTGAAGTCGCTGCACAAACTACAGCAAAACCGGTAACTACTCCAGTGAAAGAGGAGCCTGCTGCCGCAGAAGCCAAGGAGACTGAACCAAAGAGATCAGCAGTAGTGGTCTCAGCCGCTTTGGTTAAGCAACTACGAGAAGAAACCGGTGATCTTGAAAAGGCGCAAGCATACCTCAGGAAAAAGGGCCTCTCATCCGCTGATAAGAAATCCGGAAGACTGGCAGCTGAAGGAAGAATCGGTACATACATTCACGATGCACGCATTGGTGTTCTAATTGAAGTGAACTGTGAAACCGACTTTGTTGGCAGAAGTGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTCAGTTTGTATCTATTGAAGATATTCCCGAAACTATTGTGACGAAGGAAAAAGAACTTGAGATGCAAAGAGAAGACCTTGCTTCGAAACCCGAGAACATTAGAGAGAAAATTGTCGAGGGAAGAATCTCAAAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAAGGATGACAGTGTTATA

Protein sequence

>Msa0583940

MVKQTIATIGENMKVTRFVRFNLGEGLEKKSEDFAAEVAAQTTAKPVTTPVKEEPAAAEAKETEPKRSAVVVSAALVKQLREETGDLEKAQAYLRKKGLSSADKKSGRLAAEGRIGTYIHDARIGVLIEVNCETDFVGRSEKFKELVDDLAMQVQFVSIEDIPETIVTKEKELEMQREDLASKPENIREKIVEGRISKRLGELALLEQPFIKDDSVI