AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1271510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271510 MtrunA17_Chr8g0335951 58.497 306 90 3 44 327 1 291 2.26e-114 339
Msa1271510 MtrunA17_Chr8g0335951 94.444 36 2 0 296 331 190 225 2.97e-15 76.3
Msa1271510 MtrunA17_Chr8g0349431 98.400 125 2 0 106 230 1 125 2.45e-87 258
Msa1271510 MtrunA17_Chr1g0194521 38.912 239 142 3 93 331 86 320 3.66e-43 156
Msa1271510 MtrunA17_Chr8g0368151 34.052 232 151 1 99 330 24 253 9.05e-42 151
Msa1271510 MtrunA17_Chr2g0282091 35.270 241 150 2 91 331 26 260 1.84e-40 148
Msa1271510 MtrunA17_Chr1g0185601 34.454 238 148 5 98 330 36 270 7.32e-39 144
Msa1271510 MtrunA17_Chr2g0303221 33.761 234 153 2 98 331 31 262 1.98e-38 142
Msa1271510 MtrunA17_Chr8g0359961 33.621 232 152 2 100 331 35 264 3.20e-38 142
Msa1271510 MtrunA17_Chr3g0132571 32.407 216 143 2 117 330 56 270 4.77e-35 133
Msa1271510 MtrunA17_Chr4g0021331 33.054 239 151 4 98 331 27 261 7.86e-35 132
Msa1271510 MtrunA17_Chr2g0324251 32.567 261 168 3 71 331 11 263 2.81e-34 131
Msa1271510 MtrunA17_Chr1g0155351 30.556 216 149 1 110 325 66 280 6.24e-33 126
Msa1271510 MtrunA17_Chr1g0171501 25.581 215 157 3 116 330 157 368 1.49e-16 80.5
Msa1271510 MtrunA17_Chr7g0256181 24.514 257 186 5 74 330 137 385 2.31e-16 80.1
Msa1271510 MtrunA17_Chr7g0220501 31.210 157 100 2 171 327 367 515 4.19e-15 76.6
Msa1271510 MtrunA17_Chr1g0168811 24.419 172 118 3 162 326 211 377 1.23e-12 68.6
Msa1271510 MtrunA17_Chr3g0099661 23.153 203 151 4 132 330 170 371 1.26e-11 65.9
Msa1271510 MtrunA17_Chr7g0220481 29.457 129 90 1 202 330 356 483 1.59e-11 65.5
Msa1271510 MtrunA17_Chr4g0059671 29.231 130 90 2 202 330 175 303 7.87e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1271510 AT1G02150.1 61.409 298 96 2 53 331 3 300 2.17e-130 382
Msa1271510 AT1G02370.1 40.948 232 134 2 100 330 73 302 7.40e-51 177
Msa1271510 AT4G01990.1 39.407 236 140 2 96 330 37 270 2.44e-48 169
Msa1271510 AT5G09450.1 34.440 241 151 3 90 329 52 286 8.93e-42 150
Msa1271510 AT4G02820.1 34.742 213 136 3 118 330 81 290 8.57e-40 147
Msa1271510 AT1G60770.1 32.900 231 153 1 100 330 25 253 9.37e-39 144
Msa1271510 AT2G20710.1 33.617 235 155 1 97 331 37 270 9.53e-39 144
Msa1271510 AT4G21705.1 33.475 236 156 1 95 330 22 256 2.05e-37 140
Msa1271510 AT5G27460.1 32.751 229 149 2 102 326 42 269 1.47e-32 127
Msa1271510 AT2G20710.2 36.527 167 106 0 165 331 9 175 2.18e-28 114
Msa1271510 AT1G28020.1 30.698 215 147 2 117 330 55 268 1.99e-22 98.2
Msa1271510 AT3G15590.1 28.505 214 150 3 117 330 160 370 3.94e-20 91.7
Msa1271510 AT3G15590.2 28.505 214 150 3 117 330 160 370 3.94e-20 91.7
Msa1271510 AT1G80270.1 26.383 235 168 4 96 330 128 357 8.66e-19 87.8
Msa1271510 AT1G80270.3 26.383 235 168 4 96 330 128 357 8.66e-19 87.8
Msa1271510 AT1G80270.2 26.383 235 168 4 96 330 128 357 8.66e-19 87.8
Msa1271510 AT1G80270.5 26.383 235 168 4 96 330 128 357 8.66e-19 87.8
Msa1271510 AT1G80270.4 26.383 235 168 4 96 330 128 357 8.66e-19 87.8
Msa1271510 AT1G28000.1 28.111 217 152 4 118 331 53 268 1.67e-18 85.9
Msa1271510 AT1G15480.1 26.840 231 164 4 100 330 130 355 4.37e-17 82.8
Msa1271510 AT3G11380.1 30.899 178 120 3 117 292 365 541 1.96e-15 77.4
Msa1271510 AT3G11380.1 30.435 207 127 5 136 334 81 278 3.90e-14 73.6
Msa1271510 AT1G43010.1 28.571 217 134 6 117 326 55 257 2.57e-13 69.3
Msa1271510 AT3G22670.1 20.773 207 157 4 124 327 197 399 4.91e-12 67.4
Msa1271510 AT5G02860.1 28.902 173 117 5 129 296 134 305 5.57e-12 67.4
Msa1271510 AT5G02860.4 28.902 173 117 5 129 296 134 305 5.57e-12 67.4
Msa1271510 AT5G02860.2 28.902 173 117 5 129 296 134 305 5.57e-12 67.4
Msa1271510 AT5G02860.5 28.902 173 117 5 129 296 134 305 5.57e-12 67.4
Msa1271510 AT5G02860.3 28.902 173 117 5 129 296 134 305 5.57e-12 67.4
Msa1271510 AT5G25630.3 27.007 137 99 1 199 335 208 343 5.24e-11 63.9
Msa1271510 AT5G25630.1 27.007 137 99 1 199 335 259 394 6.88e-11 63.9

Find 142 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACTTGTGTCTTTAAATT+TGG 0.114196 8_3:-4980911 Msa1271510:three_prime_UTR
TATAGCATTCCATTTCAAAT+TGG 0.213868 8_3:+4984344 None:intergenic
AGCTCCCATGTAGTCGAATT+TGG 0.237732 8_3:+4981684 None:intergenic
ATCCTACCATTATTCCTAAT+TGG 0.237984 8_3:-4982117 Msa1271510:CDS
CGACTTTATCATAATCCTTA+AGG 0.296327 8_3:+4982272 None:intergenic
TCGAAGTAATGAGGAGTAAA+AGG 0.304308 8_3:-4982345 Msa1271510:CDS
CATGGATGATAGTTTGGAAT+TGG 0.314030 8_3:-4980873 Msa1271510:three_prime_UTR
TTCTGAGGCGCTTTCGTGCT+TGG 0.317772 8_3:-4981628 Msa1271510:three_prime_UTR
GTACTAAATGTACTCCAATT+AGG 0.322076 8_3:+4982103 None:intergenic
AAAGGGAAAGAGAAACGTTT+TGG 0.332422 8_3:+4984517 None:intergenic
GAAACCCAAGCCAATAAAAT+TGG 0.333547 8_3:-4981571 Msa1271510:three_prime_UTR
AAAACATGATAGAGCTCTTC+AGG 0.338362 8_3:-4984190 Msa1271510:intron
TGTACTCCAATTAGGAATAA+TGG 0.340858 8_3:+4982111 None:intergenic
GATGATGGAGAATCCTGAAT+TGG 0.341809 8_3:-4984307 Msa1271510:CDS
TTTCGTCTTGACAAAGCTTA+AGG 0.346882 8_3:+4981541 None:intergenic
AAGGCCGAGGGTAGAATATT+AGG 0.357108 8_3:-4982023 Msa1271510:exon
CATTATCTCCTGAGTTTGTA+TGG 0.359485 8_3:-4981981 Msa1271510:three_prime_UTR
GTGTTACATGGATGATAGTT+TGG 0.366350 8_3:-4980879 Msa1271510:three_prime_UTR
CTGCTTCTGTGTTGAATCAA+TGG 0.369186 8_3:-4984281 Msa1271510:CDS
TTGAGATAGATAGATATGAT+AGG 0.378571 8_3:+4984649 None:intergenic
ATAGCATTCCATTTCAAATT+GGG 0.388781 8_3:+4984345 None:intergenic
ATTGAGTTGTTGAAGAAGTC+GGG 0.392725 8_3:-4981492 Msa1271510:three_prime_UTR
TTGAAGATAATAATGATGTT+TGG 0.392985 8_3:+4984624 None:intergenic
TATTTCTTCTCTCGTAAGAA+TGG 0.397940 8_3:-4981868 Msa1271510:three_prime_UTR
GGGTCATATTGCTGAAAATA+GGG 0.397978 8_3:-4981652 Msa1271510:three_prime_UTR
AAGCACAAGAGTGCTTAAAA+AGG 0.398567 8_3:-4982042 Msa1271510:CDS
ATATATATACATATAATATC+TGG 0.400262 8_3:-4982207 Msa1271510:CDS
AGGGTCATATTGCTGAAAAT+AGG 0.400702 8_3:-4981653 Msa1271510:three_prime_UTR
CCCTCTGATGATTCTAGAAT+AGG 0.408766 8_3:-4981795 Msa1271510:three_prime_UTR
AGAGAAAACCCAATTTGAAA+TGG 0.410586 8_3:-4984353 Msa1271510:CDS
CCGCATACGCTTCGTCGTTA+TGG 0.412804 8_3:+4981466 None:intergenic
AACTCTGCAAAGTTCCCATT+TGG 0.415800 8_3:+4984236 None:intergenic
CAGAAAAGCTTTACGAGGAA+TGG 0.415843 8_3:-4981830 Msa1271510:three_prime_UTR
GTTTCCAAGTATACCTAACT+TGG 0.418407 8_3:-4981904 Msa1271510:three_prime_UTR
CTAGGTTCTTATGCTAGGTT+AGG 0.424327 8_3:-4981014 Msa1271510:three_prime_UTR
AAGGAAGGAATCTCACCAAA+TGG 0.426265 8_3:-4984251 Msa1271510:CDS
CACATTGACCCTTTGTTTGA+AGG 0.426662 8_3:+4984473 None:intergenic
ACAGCATGGTATCCCAAGTT+AGG 0.429036 8_3:+4981891 None:intergenic
AAGAAGATTGAATTTGAAGA+GGG 0.436849 8_3:+4984547 None:intergenic
TTAAAAGACAAGAGAACATA+TGG 0.437458 8_3:-4982424 Msa1271510:CDS
AATTGAGTTGTTGAAGAAGT+CGG 0.440073 8_3:-4981493 Msa1271510:three_prime_UTR
ATTCTTTCAATCCTGTTTGA+CGG 0.440996 8_3:+4981423 None:intergenic
GAAGAGTATGAGAATAAGAA+AGG 0.442055 8_3:+4984499 None:intergenic
GCACCTACATTTCAAATTGA+AGG 0.442101 8_3:-4981314 Msa1271510:three_prime_UTR
ACGAGGAATGGGTTTCTGTA+AGG 0.443573 8_3:-4981818 Msa1271510:three_prime_UTR
GGAATTGGACCCTTAGTAGA+TGG 0.444776 8_3:-4980858 Msa1271510:three_prime_UTR
TGCTTCTGTGTTGAATCAAT+GGG 0.447177 8_3:-4984280 Msa1271510:CDS
ATTACATGTACCATCTACTA+AGG 0.448080 8_3:+4980848 None:intergenic
GCAAAGATGAACCGTCAAAC+AGG 0.449173 8_3:-4981434 Msa1271510:three_prime_UTR
CGACAAGTGATTCAAAGAGT+TGG 0.450702 8_3:-4981593 Msa1271510:three_prime_UTR
ATCTCAAAGATTCACAGTTA+TGG 0.451129 8_3:-4984390 Msa1271510:intron
AGAGTCATCATTAAATTAAA+CGG 0.454778 8_3:+4982304 None:intergenic
ACACCTTCAATTTGAAATGT+AGG 0.457004 8_3:+4981311 None:intergenic
AAATGAGTTGATAGAACATA+GGG 0.462390 8_3:-4981098 Msa1271510:three_prime_UTR
CGTAAGAATGGACGATATTG+AGG 0.465330 8_3:-4981856 Msa1271510:three_prime_UTR
ATACAAGAGGATTTCGATGA+TGG 0.469256 8_3:-4984322 Msa1271510:CDS
AGAAAAGCTTTACGAGGAAT+GGG 0.471834 8_3:-4981829 Msa1271510:three_prime_UTR
TCAAGGATCAATAGAGAAGA+TGG 0.473452 8_3:-4982167 Msa1271510:CDS
ACAGAAGCAGAACCCAATTC+AGG 0.475894 8_3:+4984294 None:intergenic
TATCCCAAGTTAGGTATACT+TGG 0.477102 8_3:+4981900 None:intergenic
GGCTGCAATGTATATTAAGA+TGG 0.477129 8_3:-4982077 Msa1271510:CDS
GCTTATCACAACAGTTATGA+AGG 0.477536 8_3:-4981038 Msa1271510:three_prime_UTR
TGCAACAATGGTGAGGATAC+AGG 0.479883 8_3:+4980780 None:intergenic
GATCTAATCGCAAGAGTTCA+CGG 0.482500 8_3:-4982490 Msa1271510:CDS
GACTCTGTACATGAACCTTA+AGG 0.486004 8_3:-4982287 Msa1271510:CDS
ATGATGGAGAATCCTGAATT+GGG 0.490611 8_3:-4984306 Msa1271510:CDS
AATATCTGGTTGTCCTCTTG+TGG 0.497939 8_3:-4982193 Msa1271510:CDS
ATAAGCTGGTATCTTAAGAA+AGG 0.498356 8_3:-4981762 Msa1271510:three_prime_UTR
TTATGATAAAGTCGATATGT+TGG 0.499930 8_3:-4982263 Msa1271510:CDS
GCAGATATTCTAAACCTCTC+TGG 0.506381 8_3:+4982535 None:intergenic
TTGTCCTCTTGTGGATCTCA+AGG 0.509360 8_3:-4982184 Msa1271510:CDS
ACATTGACCCTTTGTTTGAA+GGG 0.509737 8_3:+4984474 None:intergenic
AAAATGAGTTGATAGAACAT+AGG 0.511697 8_3:-4981099 Msa1271510:three_prime_UTR
TTGAAATGTAGGTGCTACAT+AGG 0.513572 8_3:+4981322 None:intergenic
TAGGAAACCTTCTCATAAGC+TGG 0.515507 8_3:-4981776 Msa1271510:three_prime_UTR
AAGGGCTAGGTTCTTATGCT+AGG 0.518513 8_3:-4981019 Msa1271510:three_prime_UTR
CACGGAGTTTCTAGTGCAGA+AGG 0.519926 8_3:-4982472 Msa1271510:CDS
CTTCTGATGCATGTGATATG+AGG 0.519967 8_3:-4980955 Msa1271510:three_prime_UTR
ATCAAAAGCTACTATCTACT+TGG 0.530755 8_3:+4981346 None:intergenic
AAGAGTATGAGAATAAGAAA+GGG 0.530885 8_3:+4984500 None:intergenic
TACATGGGAGCTTCTTTCTG+AGG 0.536998 8_3:-4981673 Msa1271510:three_prime_UTR
GATGTCCAAATTCGACTACA+TGG 0.539568 8_3:-4981689 Msa1271510:three_prime_UTR
CAACACTTCCATACAAACTC+AGG 0.539796 8_3:+4981973 None:intergenic
CTGAGTTTGTATGGAAGTGT+TGG 0.541520 8_3:-4981972 Msa1271510:three_prime_UTR
TTATCTTCAACAAACAACAT+TGG 0.542696 8_3:-4984611 Msa1271510:CDS
CACAACAGTTATGAAGGGCT+AGG 0.546648 8_3:-4981032 Msa1271510:three_prime_UTR
AGGAAGGAATCTCACCAAAT+GGG 0.547368 8_3:-4984250 Msa1271510:CDS
AGATATGATAGGGTCCACTT+TGG 0.549000 8_3:+4984660 None:intergenic
TTCTTTAAGCATATGAGTGA+AGG 0.550405 8_3:-4981717 Msa1271510:three_prime_UTR
TGCTGAAAATAGGGTTTCTG+AGG 0.551041 8_3:-4981643 Msa1271510:three_prime_UTR
CATTGACCCTTTGTTTGAAG+GGG 0.551949 8_3:+4984475 None:intergenic
AGGACGAAGTTTACCGCGTG+TGG 0.552160 8_3:-4981944 Msa1271510:three_prime_UTR
TGAGATAGATAGATATGATA+GGG 0.552822 8_3:+4984650 None:intergenic
GTAAGAATGGACGATATTGA+GGG 0.554710 8_3:-4981855 Msa1271510:three_prime_UTR
GTATGGAAGTGTTGGAAACA+AGG 0.554809 8_3:-4981964 Msa1271510:three_prime_UTR
ATGGTACATGTAATATATCT+AGG 0.558739 8_3:-4980839 Msa1271510:three_prime_UTR
ATCAATGGGAGAATGAAGGA+AGG 0.564566 8_3:-4984266 Msa1271510:CDS
AAACTCAGGAGATAATGAAA+AGG 0.565979 8_3:+4981987 None:intergenic
TCGACCTAATATTCTACCCT+CGG 0.566861 8_3:+4982019 None:intergenic
AAAGAAGATTGAATTTGAAG+AGG 0.567795 8_3:+4984546 None:intergenic
AATCTTTACTCGAAGTAATG+AGG 0.567840 8_3:-4982354 Msa1271510:CDS
TCATTCTAGATCAAGAGAAA+AGG 0.571003 8_3:-4982380 Msa1271510:CDS
CAACAACTCAATTAAAACCT+CGG 0.574815 8_3:+4981503 None:intergenic
TGGAATGAAGTAGTGTTACA+TGG 0.574834 8_3:-4980891 Msa1271510:three_prime_UTR
TGTTGGTGTAATGTCAATGT+TGG 0.575257 8_3:+4981264 None:intergenic
TAAGATACCAGCTTATGAGA+AGG 0.579937 8_3:+4981769 None:intergenic
TTGGAGTACATTTAGTACAA+TGG 0.583230 8_3:-4982098 Msa1271510:CDS
TTTCCAAGTATACCTAACTT+GGG 0.589423 8_3:-4981903 Msa1271510:three_prime_UTR
TTTAAGCATATGAGTGAAGG+TGG 0.593303 8_3:-4981714 Msa1271510:three_prime_UTR
TAGTGAATCTGCATCCAAAG+TGG 0.597601 8_3:-4984674 Msa1271510:CDS
ACATGGGAGCTTCTTTCTGA+GGG 0.601564 8_3:-4981672 Msa1271510:three_prime_UTR
AATGAACATATGCATTCAAG+AGG 0.604245 8_3:+4982398 None:intergenic
GGATACAGGAAAAGAAGCCA+AGG 0.612454 8_3:+4980794 None:intergenic
TTGAATGTAATAACATGTGT+TGG 0.617877 8_3:+4981247 None:intergenic
TCCTATTCTAGAATCATCAG+AGG 0.618071 8_3:+4981794 None:intergenic
ATAGAAAACATACACAAGGA+TGG 0.618846 8_3:+4980932 None:intergenic
CTTATCACAACAGTTATGAA+GGG 0.620148 8_3:-4981037 Msa1271510:three_prime_UTR
TTACATGTACCATCTACTAA+GGG 0.620492 8_3:+4980849 None:intergenic
ATTGACCCTTTGTTTGAAGG+GGG 0.620972 8_3:+4984476 None:intergenic
TTGAATCAATGGGAGAATGA+AGG 0.623335 8_3:-4984270 Msa1271510:CDS
AATGGAATGCTATATACAAG+AGG 0.631419 8_3:-4984335 Msa1271510:CDS
TCTTATGCTAGGTTAGGACA+TGG 0.635402 8_3:-4981008 Msa1271510:three_prime_UTR
ATGAGTTGATAGAACATAGG+GGG 0.638934 8_3:-4981096 Msa1271510:three_prime_UTR
AGAAGATTGAATTTGAAGAG+GGG 0.639018 8_3:+4984548 None:intergenic
TTGACCCTTTGTTTGAAGGG+GGG 0.640200 8_3:+4984477 None:intergenic
TTGTCAAGACGAAAACGACA+TGG 0.642627 8_3:-4981532 Msa1271510:three_prime_UTR
CCTATTCTAGAATCATCAGA+GGG 0.647606 8_3:+4981795 None:intergenic
CATTTCAAATTGAAGGTGTG+TGG 0.651483 8_3:-4981307 Msa1271510:three_prime_UTR
ATGAACATATGCATTCAAGA+GGG 0.654487 8_3:+4982399 None:intergenic
AAGCATATGAGTGAAGGTGG+TGG 0.657423 8_3:-4981711 Msa1271510:three_prime_UTR
GTGTGGTGTCTAACATGTGT+CGG 0.664995 8_3:-4981290 Msa1271510:three_prime_UTR
ATGTCCAAATTCGACTACAT+GGG 0.669288 8_3:-4981688 Msa1271510:three_prime_UTR
TGATCCTTGAGATCCACAAG+AGG 0.674298 8_3:+4982180 None:intergenic
CGAGAGAAGAAATAACAGCA+TGG 0.674858 8_3:+4981877 None:intergenic
CTCCAATTAGGAATAATGGT+AGG 0.679561 8_3:+4982115 None:intergenic
TAAGAATGGACGATATTGAG+GGG 0.688947 8_3:-4981854 Msa1271510:three_prime_UTR
AAGAATGGACGATATTGAGG+GGG 0.691386 8_3:-4981853 Msa1271510:three_prime_UTR
ATTTATAGTTATTCCACACG+CGG 0.697764 8_3:+4981931 None:intergenic
AATGAGTTGATAGAACATAG+GGG 0.698896 8_3:-4981097 Msa1271510:three_prime_UTR
AGTCATAGAAAACATACACA+AGG 0.711577 8_3:+4980928 None:intergenic
AAACGACATGGAGAGCGCCG+AGG 0.711901 8_3:-4981520 Msa1271510:three_prime_UTR
GGATGAACAATAGACCAGAG+AGG 0.722678 8_3:-4982549 Msa1271510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATACATATAATATC+TGG - chr8_3:4983276-4983295 Msa1271510:intron 10.0%
!! AAACAAAAAATATGATTGAA+AGG + chr8_3:4982234-4982253 None:intergenic 15.0%
!! AAAAAATTTATATCAGTTTG+AGG + chr8_3:4982488-4982507 None:intergenic 15.0%
!! TTGAAGATAATAATGATGTT+TGG + chr8_3:4980862-4980881 None:intergenic 20.0%
!!! AAGAATTGTGTTTTTTAATC+AGG + chr8_3:4981830-4981849 None:intergenic 20.0%
!!! TAGAATTCTTGTTTATTTTC+CGG + chr8_3:4981885-4981904 None:intergenic 20.0%
!! ACACACACAAAAAAAAAAAA+AGG - chr8_3:4982050-4982069 Msa1271510:CDS 20.0%
!!! GTTAAAGGTTTTTGATTTTT+TGG + chr8_3:4982289-4982308 None:intergenic 20.0%
!! GTAGTAAAAGAAATACATAA+CGG - chr8_3:4982455-4982474 Msa1271510:CDS 20.0%
!!! GGAAATTTTCAATATATTCA+GGG + chr8_3:4982627-4982646 None:intergenic 20.0%
!!! AGGAAATTTTCAATATATTC+AGG + chr8_3:4982628-4982647 None:intergenic 20.0%
!! TGATATTAAGACATTATTTG+AGG + chr8_3:4982856-4982875 None:intergenic 20.0%
!! AGAGTCATCATTAAATTAAA+CGG + chr8_3:4983182-4983201 None:intergenic 20.0%
! TGAGATAGATAGATATGATA+GGG + chr8_3:4980836-4980855 None:intergenic 25.0%
! TTGAGATAGATAGATATGAT+AGG + chr8_3:4980837-4980856 None:intergenic 25.0%
! TTATCTTCAACAAACAACAT+TGG - chr8_3:4980872-4980891 Msa1271510:three_prime_UTR 25.0%
! AAGAAGATTGAATTTGAAGA+GGG + chr8_3:4980939-4980958 None:intergenic 25.0%
! AAAGAAGATTGAATTTGAAG+AGG + chr8_3:4980940-4980959 None:intergenic 25.0%
!! AAGAGTATGAGAATAAGAAA+GGG + chr8_3:4980986-4981005 None:intergenic 25.0%
! ATAGCATTCCATTTCAAATT+GGG + chr8_3:4981141-4981160 None:intergenic 25.0%
! TATAGCATTCCATTTCAAAT+TGG + chr8_3:4981142-4981161 None:intergenic 25.0%
!!! TGTGTTTTTTAATCAGGAAA+TGG + chr8_3:4981824-4981843 None:intergenic 25.0%
!!! AGAATTCTTGTTTATTTTCC+GGG + chr8_3:4981884-4981903 None:intergenic 25.0%
! TTAAGTTTAAATGTCTCTGT+TGG + chr8_3:4981953-4981972 None:intergenic 25.0%
! AAATCATAATGTATCATGAG+AGG + chr8_3:4982117-4982136 None:intergenic 25.0%
! TTTGGGGATAGAAATTATTA+AGG + chr8_3:4982206-4982225 None:intergenic 25.0%
!! ATGATTGAAAGGTATGATTT+GGG + chr8_3:4982223-4982242 None:intergenic 25.0%
!! TATGATTGAAAGGTATGATT+TGG + chr8_3:4982224-4982243 None:intergenic 25.0%
! TTAAAACTTGTAGTGGTTAA+AGG + chr8_3:4982304-4982323 None:intergenic 25.0%
!! ACACAATTTAAAACTTGTAG+TGG + chr8_3:4982311-4982330 None:intergenic 25.0%
!! ACTGACCAATACAATTTTTA+GGG + chr8_3:4982361-4982380 None:intergenic 25.0%
!! ATTTCTTTTACTACGTTTCT+TGG + chr8_3:4982449-4982468 None:intergenic 25.0%
!! TAAAAGAAATACATAACGGA+CGG - chr8_3:4982459-4982478 Msa1271510:CDS 25.0%
!! ACACCAACGTTAAAATTTTA+TGG - chr8_3:4982537-4982556 Msa1271510:CDS 25.0%
!! CACCAACGTTAAAATTTTAT+GGG - chr8_3:4982538-4982557 Msa1271510:CDS 25.0%
!! ACCAACGTTAAAATTTTATG+GGG - chr8_3:4982539-4982558 Msa1271510:CDS 25.0%
!!! TTTTTTTTTACCAACAGTCT+AGG + chr8_3:4982648-4982667 None:intergenic 25.0%
! TACTTTCAAAAAATCATTCG+TGG + chr8_3:4982880-4982899 None:intergenic 25.0%
!!! TGTCTTTTAAATCATTGGTT+AGG + chr8_3:4983049-4983068 None:intergenic 25.0%
!! TCTCTTGTCTTTTAAATCAT+TGG + chr8_3:4983054-4983073 None:intergenic 25.0%
! TTAAAAGACAAGAGAACATA+TGG - chr8_3:4983059-4983078 Msa1271510:intron 25.0%
! TTATGATAAAGTCGATATGT+TGG - chr8_3:4983220-4983239 Msa1271510:intron 25.0%
! TTGAATGTAATAACATGTGT+TGG + chr8_3:4984239-4984258 None:intergenic 25.0%
!!! TCAAATTTTGTTTTGACTTG+TGG - chr8_3:4984361-4984380 Msa1271510:CDS 25.0%
!!! AAAATGAGTTGATAGAACAT+AGG - chr8_3:4984384-4984403 Msa1271510:CDS 25.0%
!!! AAATGAGTTGATAGAACATA+GGG - chr8_3:4984385-4984404 Msa1271510:intron 25.0%
!! TTCTTTTTCTCAAGCTTTTA+TGG - chr8_3:4984423-4984442 Msa1271510:intron 25.0%
!! ATGACTTGTGTCTTTAAATT+TGG - chr8_3:4984572-4984591 Msa1271510:CDS 25.0%
! ATGGTACATGTAATATATCT+AGG - chr8_3:4984644-4984663 Msa1271510:CDS 25.0%
AGAAGATTGAATTTGAAGAG+GGG + chr8_3:4980938-4980957 None:intergenic 30.0%
! GAAGAGTATGAGAATAAGAA+AGG + chr8_3:4980987-4981006 None:intergenic 30.0%
ATCTCAAAGATTCACAGTTA+TGG - chr8_3:4981093-4981112 Msa1271510:three_prime_UTR 30.0%
AGAGAAAACCCAATTTGAAA+TGG - chr8_3:4981130-4981149 Msa1271510:three_prime_UTR 30.0%
AATGGAATGCTATATACAAG+AGG - chr8_3:4981148-4981167 Msa1271510:three_prime_UTR 30.0%
! ATATGTTTCTATGTCCTGTT+TGG - chr8_3:4981337-4981356 Msa1271510:three_prime_UTR 30.0%
TTGCTTCATAATGTTAAGGA+GGG + chr8_3:4981435-4981454 None:intergenic 30.0%
!! GAATTCTTGTTTATTTTCCG+GGG + chr8_3:4981883-4981902 None:intergenic 30.0%
CTAGAAGACATTAATGCAAT+AGG - chr8_3:4981902-4981921 Msa1271510:three_prime_UTR 30.0%
AATATATTCAGCTGCACAAT+TGG + chr8_3:4982000-4982019 None:intergenic 30.0%
AATTGTGATAGCTAAAGTGT+CGG + chr8_3:4982176-4982195 None:intergenic 30.0%
! TGATTGAAAGGTATGATTTG+GGG + chr8_3:4982222-4982241 None:intergenic 30.0%
ATCCACCCTAAAAATTGTAT+TGG - chr8_3:4982353-4982372 Msa1271510:CDS 30.0%
! CACTGACCAATACAATTTTT+AGG + chr8_3:4982362-4982381 None:intergenic 30.0%
! CTAAAAATTGTATTGGTCAG+TGG - chr8_3:4982360-4982379 Msa1271510:CDS 30.0%
TTGGATTTCATAGATGACTA+AGG + chr8_3:4982430-4982449 None:intergenic 30.0%
TTGAAAATTTCCTAGACTGT+TGG - chr8_3:4982635-4982654 Msa1271510:intron 30.0%
ACATGTGGATAGTATAAGAA+TGG + chr8_3:4982691-4982710 None:intergenic 30.0%
TTCCGTTTAGTAGAATCATA+GGG + chr8_3:4982768-4982787 None:intergenic 30.0%
ATTCCGTTTAGTAGAATCAT+AGG + chr8_3:4982769-4982788 None:intergenic 30.0%
! TTAAGACATTATTTGAGGCA+AGG + chr8_3:4982851-4982870 None:intergenic 30.0%
! ATGTTTTGCAGGTATATGAT+TGG - chr8_3:4982913-4982932 Msa1271510:intron 30.0%
ATGAACATATGCATTCAAGA+GGG + chr8_3:4983087-4983106 None:intergenic 30.0%
AATGAACATATGCATTCAAG+AGG + chr8_3:4983088-4983107 None:intergenic 30.0%
TCATTCTAGATCAAGAGAAA+AGG - chr8_3:4983103-4983122 Msa1271510:intron 30.0%
AATCTTTACTCGAAGTAATG+AGG - chr8_3:4983129-4983148 Msa1271510:intron 30.0%
CGACTTTATCATAATCCTTA+AGG + chr8_3:4983214-4983233 None:intergenic 30.0%
! AGTTTTTGAACAGATGTCAA+AGG - chr8_3:4983343-4983362 Msa1271510:intron 30.0%
ATCCTACCATTATTCCTAAT+TGG - chr8_3:4983366-4983385 Msa1271510:intron 30.0%
TGTACTCCAATTAGGAATAA+TGG + chr8_3:4983375-4983394 None:intergenic 30.0%
GTACTAAATGTACTCCAATT+AGG + chr8_3:4983383-4983402 None:intergenic 30.0%
TTGGAGTACATTTAGTACAA+TGG - chr8_3:4983385-4983404 Msa1271510:intron 30.0%
AAACTCAGGAGATAATGAAA+AGG + chr8_3:4983499-4983518 None:intergenic 30.0%
ATTTATAGTTATTCCACACG+CGG + chr8_3:4983555-4983574 None:intergenic 30.0%
TTTCCAAGTATACCTAACTT+GGG - chr8_3:4983580-4983599 Msa1271510:intron 30.0%
TATTTCTTCTCTCGTAAGAA+TGG - chr8_3:4983615-4983634 Msa1271510:intron 30.0%
ATAAGCTGGTATCTTAAGAA+AGG - chr8_3:4983721-4983740 Msa1271510:intron 30.0%
TTCTTTAAGCATATGAGTGA+AGG - chr8_3:4983766-4983785 Msa1271510:intron 30.0%
CAACAACTCAATTAAAACCT+CGG + chr8_3:4983983-4984002 None:intergenic 30.0%
! AATTGAGTTGTTGAAGAAGT+CGG - chr8_3:4983990-4984009 Msa1271510:intron 30.0%
ATTCTTTCAATCCTGTTTGA+CGG + chr8_3:4984063-4984082 None:intergenic 30.0%
ATCAAAAGCTACTATCTACT+TGG + chr8_3:4984140-4984159 None:intergenic 30.0%
! ACACCTTCAATTTGAAATGT+AGG + chr8_3:4984175-4984194 None:intergenic 30.0%
!! AATGAGTTGATAGAACATAG+GGG - chr8_3:4984386-4984405 Msa1271510:intron 30.0%
CTTATCACAACAGTTATGAA+GGG - chr8_3:4984446-4984465 Msa1271510:intron 30.0%
ATAGAAAACATACACAAGGA+TGG + chr8_3:4984554-4984573 None:intergenic 30.0%
AGTCATAGAAAACATACACA+AGG + chr8_3:4984558-4984577 None:intergenic 30.0%
TTACATGTACCATCTACTAA+GGG + chr8_3:4984637-4984656 None:intergenic 30.0%
ATTACATGTACCATCTACTA+AGG + chr8_3:4984638-4984657 None:intergenic 30.0%
! AAAGGGAAAGAGAAACGTTT+TGG + chr8_3:4980969-4980988 None:intergenic 35.0%
! ACATTGACCCTTTGTTTGAA+GGG + chr8_3:4981012-4981031 None:intergenic 35.0%
! AATGTGTTTTACACTGACAG+TGG - chr8_3:4981027-4981046 Msa1271510:three_prime_UTR 35.0%
! TTTTACACTGACAGTGGAAT+TGG - chr8_3:4981033-4981052 Msa1271510:three_prime_UTR 35.0%
ATACAAGAGGATTTCGATGA+TGG - chr8_3:4981161-4981180 Msa1271510:three_prime_UTR 35.0%
! ATGATGGAGAATCCTGAATT+GGG - chr8_3:4981177-4981196 Msa1271510:three_prime_UTR 35.0%
TGCTTCTGTGTTGAATCAAT+GGG - chr8_3:4981203-4981222 Msa1271510:three_prime_UTR 35.0%
TTGAATCAATGGGAGAATGA+AGG - chr8_3:4981213-4981232 Msa1271510:three_prime_UTR 35.0%
AAAACATGATAGAGCTCTTC+AGG - chr8_3:4981293-4981312 Msa1271510:three_prime_UTR 35.0%
!!! TGCTAGTTTTCGCTGTTTTA+GGG - chr8_3:4981387-4981406 Msa1271510:three_prime_UTR 35.0%
TGCTTCATAATGTTAAGGAG+GGG + chr8_3:4981434-4981453 None:intergenic 35.0%
GTTGCTTCATAATGTTAAGG+AGG + chr8_3:4981436-4981455 None:intergenic 35.0%
! GCTGTTGCTTCATAATGTTA+AGG + chr8_3:4981439-4981458 None:intergenic 35.0%
TTGGAGTTCAATCTGTTGTT+CGG + chr8_3:4981477-4981496 None:intergenic 35.0%
ACAACAGATTGAACTCCAAA+AGG - chr8_3:4981478-4981497 Msa1271510:three_prime_UTR 35.0%
CTCCAAAAGGTAAGAATGAA+CGG - chr8_3:4981491-4981510 Msa1271510:three_prime_UTR 35.0%
! TAACATGGTAGTGTATTGGA+TGG + chr8_3:4981523-4981542 None:intergenic 35.0%
TCTTTGGTACGATAGAGATT+GGG + chr8_3:4981577-4981596 None:intergenic 35.0%
TGTTGGACCATTCCATAATA+CGG - chr8_3:4981606-4981625 Msa1271510:three_prime_UTR 35.0%
TTGGTCATGATATAGTTCTC+AGG + chr8_3:4981856-4981875 None:intergenic 35.0%
TTGCCAAATAGATGACACTT+TGG - chr8_3:4982135-4982154 Msa1271510:CDS 35.0%
! TAGCCAAAGTGTCATCTATT+TGG + chr8_3:4982141-4982160 None:intergenic 35.0%
TTTGGACACAGATTGAACAA+TGG + chr8_3:4982271-4982290 None:intergenic 35.0%
!! GACCAATACAATTTTTAGGG+TGG + chr8_3:4982358-4982377 None:intergenic 35.0%
!! GCCCCATAAAATTTTAACGT+TGG + chr8_3:4982543-4982562 None:intergenic 35.0%
! ACGTTAAAATTTTATGGGGC+CGG - chr8_3:4982543-4982562 Msa1271510:CDS 35.0%
TTACTGACAGTTTGCAAATC+TGG + chr8_3:4982719-4982738 None:intergenic 35.0%
TAGTAGAATCATAGGGGAAA+TGG + chr8_3:4982761-4982780 None:intergenic 35.0%
TCCCCTATGATTCTACTAAA+CGG - chr8_3:4982763-4982782 Msa1271510:intron 35.0%
TCCGTTTAGTAGAATCATAG+GGG + chr8_3:4982767-4982786 None:intergenic 35.0%
CATACTTTCATGCATTCCAA+AGG + chr8_3:4982796-4982815 None:intergenic 35.0%
! GACTAATGAACATGTTTTGC+AGG - chr8_3:4982902-4982921 Msa1271510:intron 35.0%
TCGAAGTAATGAGGAGTAAA+AGG - chr8_3:4983138-4983157 Msa1271510:intron 35.0%
TCAAGGATCAATAGAGAAGA+TGG - chr8_3:4983316-4983335 Msa1271510:intron 35.0%
CTCCAATTAGGAATAATGGT+AGG + chr8_3:4983371-4983390 None:intergenic 35.0%
GGCTGCAATGTATATTAAGA+TGG - chr8_3:4983406-4983425 Msa1271510:intron 35.0%
!! AAGCACAAGAGTGCTTAAAA+AGG - chr8_3:4983441-4983460 Msa1271510:intron 35.0%
CATTATCTCCTGAGTTTGTA+TGG - chr8_3:4983502-4983521 Msa1271510:intron 35.0%
GTTTCCAAGTATACCTAACT+TGG - chr8_3:4983579-4983598 Msa1271510:intron 35.0%
TATCCCAAGTTAGGTATACT+TGG + chr8_3:4983586-4983605 None:intergenic 35.0%
GTAAGAATGGACGATATTGA+GGG - chr8_3:4983628-4983647 Msa1271510:intron 35.0%
TAAGAATGGACGATATTGAG+GGG - chr8_3:4983629-4983648 Msa1271510:intron 35.0%
AGAAAAGCTTTACGAGGAAT+GGG - chr8_3:4983654-4983673 Msa1271510:intron 35.0%
!! CCTATTCTAGAATCATCAGA+GGG + chr8_3:4983691-4983710 None:intergenic 35.0%
!! TCCTATTCTAGAATCATCAG+AGG + chr8_3:4983692-4983711 None:intergenic 35.0%
TAAGATACCAGCTTATGAGA+AGG + chr8_3:4983717-4983736 None:intergenic 35.0%
TTTAAGCATATGAGTGAAGG+TGG - chr8_3:4983769-4983788 Msa1271510:intron 35.0%
ATGTCCAAATTCGACTACAT+GGG - chr8_3:4983795-4983814 Msa1271510:intron 35.0%
AGGGTCATATTGCTGAAAAT+AGG - chr8_3:4983830-4983849 Msa1271510:intron 35.0%
GGGTCATATTGCTGAAAATA+GGG - chr8_3:4983831-4983850 Msa1271510:intron 35.0%
GAAACCCAAGCCAATAAAAT+TGG - chr8_3:4983912-4983931 Msa1271510:intron 35.0%
! AGGAATGCAGCCAATTTTAT+TGG + chr8_3:4983925-4983944 None:intergenic 35.0%
TTTCGTCTTGACAAAGCTTA+AGG + chr8_3:4983945-4983964 None:intergenic 35.0%
! ATTGAGTTGTTGAAGAAGTC+GGG - chr8_3:4983991-4984010 Msa1271510:intron 35.0%
! TTGAAATGTAGGTGCTACAT+AGG + chr8_3:4984164-4984183 None:intergenic 35.0%
GCACCTACATTTCAAATTGA+AGG - chr8_3:4984169-4984188 Msa1271510:intron 35.0%
! CATTTCAAATTGAAGGTGTG+TGG - chr8_3:4984176-4984195 Msa1271510:intron 35.0%
TGTTGGTGTAATGTCAATGT+TGG + chr8_3:4984222-4984241 None:intergenic 35.0%
!! ATGAGTTGATAGAACATAGG+GGG - chr8_3:4984387-4984406 Msa1271510:intron 35.0%
GCTTATCACAACAGTTATGA+AGG - chr8_3:4984445-4984464 Msa1271510:intron 35.0%
! GACTGATGTTTTGCTCTAAT+AGG - chr8_3:4984497-4984516 Msa1271510:CDS 35.0%
TGGAATGAAGTAGTGTTACA+TGG - chr8_3:4984592-4984611 Msa1271510:CDS 35.0%
GTGTTACATGGATGATAGTT+TGG - chr8_3:4984604-4984623 Msa1271510:CDS 35.0%
! CATGGATGATAGTTTGGAAT+TGG - chr8_3:4984610-4984629 Msa1271510:CDS 35.0%
TAGTGAATCTGCATCCAAAG+TGG - chr8_3:4980809-4980828 Msa1271510:three_prime_UTR 40.0%
AGATATGATAGGGTCCACTT+TGG + chr8_3:4980826-4980845 None:intergenic 40.0%
! ATTGACCCTTTGTTTGAAGG+GGG + chr8_3:4981010-4981029 None:intergenic 40.0%
! CATTGACCCTTTGTTTGAAG+GGG + chr8_3:4981011-4981030 None:intergenic 40.0%
! CACATTGACCCTTTGTTTGA+AGG + chr8_3:4981013-4981032 None:intergenic 40.0%
ACTGACAGTGGAATTGGAAT+TGG - chr8_3:4981039-4981058 Msa1271510:three_prime_UTR 40.0%
!! GATGATGGAGAATCCTGAAT+TGG - chr8_3:4981176-4981195 Msa1271510:three_prime_UTR 40.0%
CTGCTTCTGTGTTGAATCAA+TGG - chr8_3:4981202-4981221 Msa1271510:three_prime_UTR 40.0%
ATCAATGGGAGAATGAAGGA+AGG - chr8_3:4981217-4981236 Msa1271510:three_prime_UTR 40.0%
AAGGAAGGAATCTCACCAAA+TGG - chr8_3:4981232-4981251 Msa1271510:three_prime_UTR 40.0%
AGGAAGGAATCTCACCAAAT+GGG - chr8_3:4981233-4981252 Msa1271510:three_prime_UTR 40.0%
AACTCTGCAAAGTTCCCATT+TGG + chr8_3:4981250-4981269 None:intergenic 40.0%
!!! CTGCTAGTTTTCGCTGTTTT+AGG - chr8_3:4981386-4981405 Msa1271510:three_prime_UTR 40.0%
!!! GCTAGTTTTCGCTGTTTTAG+GGG - chr8_3:4981388-4981407 Msa1271510:three_prime_UTR 40.0%
!! GAGGGGGTATGTTTTTAACA+CGG + chr8_3:4981417-4981436 None:intergenic 40.0%
GCTTCATAATGTTAAGGAGG+GGG + chr8_3:4981433-4981452 None:intergenic 40.0%
! CACCGTTCATTCTTACCTTT+TGG + chr8_3:4981496-4981515 None:intergenic 40.0%
! AGGCTAACATGGTAGTGTAT+TGG + chr8_3:4981527-4981546 None:intergenic 40.0%
GTCTTTGGTACGATAGAGAT+TGG + chr8_3:4981578-4981597 None:intergenic 40.0%
TCACCATCCGTATTATGGAA+TGG + chr8_3:4981616-4981635 None:intergenic 40.0%
GATGATCACCATCCGTATTA+TGG + chr8_3:4981621-4981640 None:intergenic 40.0%
! TCTATTTTCAGCAGGACAAC+AGG + chr8_3:4981746-4981765 None:intergenic 40.0%
! GTTTTTACTTTGGCTGATGG+AGG + chr8_3:4981793-4981812 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG + chr8_3:4981796-4981815 None:intergenic 40.0%
CCATCAGCCAAAGTAAAAAC+AGG - chr8_3:4981793-4981812 Msa1271510:three_prime_UTR 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG + chr8_3:4981803-4981822 None:intergenic 40.0%
ATATCATGACCAAACTACCC+CGG - chr8_3:4981863-4981882 Msa1271510:three_prime_UTR 40.0%
!! GTTTATTTTCCGGGGTAGTT+TGG + chr8_3:4981875-4981894 None:intergenic 40.0%
! TTAACAGCTTTTGCAGTGAC+TGG - chr8_3:4981969-4981988 Msa1271510:three_prime_UTR 40.0%
! TTTGTGTGTGTGTTGCTGAT+TGG + chr8_3:4982041-4982060 None:intergenic 40.0%
! TAGGGTGGATTTCATAGTCT+TGG + chr8_3:4982343-4982362 None:intergenic 40.0%
TTAACGTTGGTGTGAGAACA+TGG + chr8_3:4982530-4982549 None:intergenic 40.0%
TACCACGTCAAAAGTTTAGC+CGG + chr8_3:4982565-4982584 None:intergenic 40.0%
! GCAAATCTGGAATTGACATG+TGG + chr8_3:4982706-4982725 None:intergenic 40.0%
ACTAAACGGAATGCTTCCTT+TGG - chr8_3:4982777-4982796 Msa1271510:intron 40.0%
GCAGATATTCTAAACCTCTC+TGG + chr8_3:4982951-4982970 None:intergenic 40.0%
GATCTAATCGCAAGAGTTCA+CGG - chr8_3:4982993-4983012 Msa1271510:intron 40.0%
GACTCTGTACATGAACCTTA+AGG - chr8_3:4983196-4983215 Msa1271510:intron 40.0%
AATATCTGGTTGTCCTCTTG+TGG - chr8_3:4983290-4983309 Msa1271510:intron 40.0%
TCGACCTAATATTCTACCCT+CGG + chr8_3:4983467-4983486 None:intergenic 40.0%
CAACACTTCCATACAAACTC+AGG + chr8_3:4983513-4983532 None:intergenic 40.0%
! CTGAGTTTGTATGGAAGTGT+TGG - chr8_3:4983511-4983530 Msa1271510:intron 40.0%
!! GTATGGAAGTGTTGGAAACA+AGG - chr8_3:4983519-4983538 Msa1271510:intron 40.0%
CGAGAGAAGAAATAACAGCA+TGG + chr8_3:4983609-4983628 None:intergenic 40.0%
CGTAAGAATGGACGATATTG+AGG - chr8_3:4983627-4983646 Msa1271510:intron 40.0%
AAGAATGGACGATATTGAGG+GGG - chr8_3:4983630-4983649 Msa1271510:intron 40.0%
CAGAAAAGCTTTACGAGGAA+TGG - chr8_3:4983653-4983672 Msa1271510:intron 40.0%
!! CCCTCTGATGATTCTAGAAT+AGG - chr8_3:4983688-4983707 Msa1271510:intron 40.0%
TAGGAAACCTTCTCATAAGC+TGG - chr8_3:4983707-4983726 Msa1271510:intron 40.0%
GATGTCCAAATTCGACTACA+TGG - chr8_3:4983794-4983813 Msa1271510:intron 40.0%
TGCTGAAAATAGGGTTTCTG+AGG - chr8_3:4983840-4983859 Msa1271510:intron 40.0%
CGACAAGTGATTCAAAGAGT+TGG - chr8_3:4983890-4983909 Msa1271510:intron 40.0%
!!! GCAGCCAATTTTATTGGCTT+GGG + chr8_3:4983919-4983938 None:intergenic 40.0%
!! TGCAGCCAATTTTATTGGCT+TGG + chr8_3:4983920-4983939 None:intergenic 40.0%
TTGTCAAGACGAAAACGACA+TGG - chr8_3:4983951-4983970 Msa1271510:intron 40.0%
CTAGGTTCTTATGCTAGGTT+AGG - chr8_3:4984469-4984488 Msa1271510:intron 40.0%
TCTTATGCTAGGTTAGGACA+TGG - chr8_3:4984475-4984494 Msa1271510:intron 40.0%
CTTCTGATGCATGTGATATG+AGG - chr8_3:4984528-4984547 Msa1271510:CDS 40.0%
TCTTCCCCCCTTCAAACAAA+GGG - chr8_3:4981002-4981021 Msa1271510:three_prime_UTR 45.0%
! TTGACCCTTTGTTTGAAGGG+GGG + chr8_3:4981009-4981028 None:intergenic 45.0%
GACAGTGGAATTGGAATTGG+AGG - chr8_3:4981042-4981061 Msa1271510:three_prime_UTR 45.0%
ACAGAAGCAGAACCCAATTC+AGG + chr8_3:4981192-4981211 None:intergenic 45.0%
GCTGTAACAACTAGCCAAAC+AGG + chr8_3:4981354-4981373 None:intergenic 45.0%
CATCTACAGTGAGGCTAACA+TGG + chr8_3:4981538-4981557 None:intergenic 45.0%
CGTAGTTCACATCTACAGTG+AGG + chr8_3:4981547-4981566 None:intergenic 45.0%
TTGGTACGATAGAGATTGGG+AGG + chr8_3:4981574-4981593 None:intergenic 45.0%
ATGGAATGGTCCAACAACAG+TGG + chr8_3:4981602-4981621 None:intergenic 45.0%
GGACCATTCCATAATACGGA+TGG - chr8_3:4981610-4981629 Msa1271510:three_prime_UTR 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8_3:4981658-4981677 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8_3:4981659-4981678 None:intergenic 45.0%
! GGAGGGATTCTATTTTCAGC+AGG + chr8_3:4981754-4981773 None:intergenic 45.0%
GGATGAACAATAGACCAGAG+AGG - chr8_3:4982934-4982953 Msa1271510:intron 45.0%
TTGTCCTCTTGTGGATCTCA+AGG - chr8_3:4983299-4983318 Msa1271510:intron 45.0%
TGATCCTTGAGATCCACAAG+AGG + chr8_3:4983306-4983325 None:intergenic 45.0%
!! AAGAGTGCTTAAAAAGGCCG+AGG - chr8_3:4983447-4983466 Msa1271510:intron 45.0%
! AGAGTGCTTAAAAAGGCCGA+GGG - chr8_3:4983448-4983467 Msa1271510:intron 45.0%
AAGGCCGAGGGTAGAATATT+AGG - chr8_3:4983460-4983479 Msa1271510:intron 45.0%
ACAGCATGGTATCCCAAGTT+AGG + chr8_3:4983595-4983614 None:intergenic 45.0%
! ACGAGGAATGGGTTTCTGTA+AGG - chr8_3:4983665-4983684 Msa1271510:intron 45.0%
AAGCATATGAGTGAAGGTGG+TGG - chr8_3:4983772-4983791 Msa1271510:intron 45.0%
AGCTCCCATGTAGTCGAATT+TGG + chr8_3:4983802-4983821 None:intergenic 45.0%
TACATGGGAGCTTCTTTCTG+AGG - chr8_3:4983810-4983829 Msa1271510:intron 45.0%
ACATGGGAGCTTCTTTCTGA+GGG - chr8_3:4983811-4983830 Msa1271510:intron 45.0%
GCAAAGATGAACCGTCAAAC+AGG - chr8_3:4984049-4984068 Msa1271510:intron 45.0%
GTGTGGTGTCTAACATGTGT+CGG - chr8_3:4984193-4984212 Msa1271510:CDS 45.0%
CACAACAGTTATGAAGGGCT+AGG - chr8_3:4984451-4984470 Msa1271510:intron 45.0%
AAGGGCTAGGTTCTTATGCT+AGG - chr8_3:4984464-4984483 Msa1271510:intron 45.0%
GGAATTGGACCCTTAGTAGA+TGG - chr8_3:4984625-4984644 Msa1271510:CDS 45.0%
!! GTGTGTGTGTGTTACTTCCT+TGG - chr8_3:4984672-4984691 Msa1271510:CDS 45.0%
GGATACAGGAAAAGAAGCCA+AGG + chr8_3:4984692-4984711 None:intergenic 45.0%
!!! TATAAATTTTTTAATTCAAA+AGG - chr8_3:4982496-4982515 Msa1271510:CDS 5.0%
CTCTTCCCCCCTTCAAACAA+AGG - chr8_3:4981001-4981020 Msa1271510:three_prime_UTR 50.0%
ACCAAAGACGCCACTGTTGT+TGG - chr8_3:4981589-4981608 Msa1271510:three_prime_UTR 50.0%
TCCAACAACAGTGGCGTCTT+TGG + chr8_3:4981593-4981612 None:intergenic 50.0%
TGTTATCCGACCCCACTTAG+TGG - chr8_3:4981645-4981664 Msa1271510:three_prime_UTR 50.0%
GTTATCCGACCCCACTTAGT+GGG - chr8_3:4981646-4981665 Msa1271510:three_prime_UTR 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8_3:4981654-4981673 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8_3:4981660-4981679 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8_3:4981657-4981676 Msa1271510:three_prime_UTR 50.0%
CTCCACCAGAACTGCTTCAT+TGG - chr8_3:4981720-4981739 Msa1271510:three_prime_UTR 50.0%
ACAGGCCAATGAAGCAGTTC+TGG + chr8_3:4981728-4981747 None:intergenic 50.0%
! ACTTTGGCTGATGGAGGCAT+CGG + chr8_3:4981787-4981806 None:intergenic 50.0%
GTCAGTGGTGACTCAGTTGA+TGG - chr8_3:4982375-4982394 Msa1271510:CDS 50.0%
ACGTTGGTGTGAGAACATGG+AGG + chr8_3:4982527-4982546 None:intergenic 50.0%
!! CACGGAGTTTCTAGTGCAGA+AGG - chr8_3:4983011-4983030 Msa1271510:intron 50.0%
CCATAACGACGAAGCGTATG+CGG - chr8_3:4984017-4984036 Msa1271510:intron 50.0%
TCCTCGATGTGTGTGTGTGT+GGG - chr8_3:4984319-4984338 Msa1271510:CDS 50.0%
CGACCCCACTTAGTGGGATA+AGG - chr8_3:4981652-4981671 Msa1271510:three_prime_UTR 55.0%
! GGCCAATGAAGCAGTTCTGG+TGG + chr8_3:4981725-4981744 None:intergenic 55.0%
!! GCATCGGTGACTGGTTTGGA+GGG + chr8_3:4981771-4981790 None:intergenic 55.0%
! GGCCGGCTAAACTTTTGACG+TGG - chr8_3:4982560-4982579 Msa1271510:CDS 55.0%
AGGACGAAGTTTACCGCGTG+TGG - chr8_3:4983539-4983558 Msa1271510:intron 55.0%
GGGGGCAGAAAAGCTTTACG+AGG - chr8_3:4983648-4983667 Msa1271510:intron 55.0%
!! TTCTGAGGCGCTTTCGTGCT+TGG - chr8_3:4983855-4983874 Msa1271510:intron 55.0%
CCGCATACGCTTCGTCGTTA+TGG + chr8_3:4984020-4984039 None:intergenic 55.0%
GTCCTCGATGTGTGTGTGTG+TGG - chr8_3:4984318-4984337 Msa1271510:CDS 55.0%
ACCCACACACACACACATCG+AGG + chr8_3:4984323-4984342 None:intergenic 55.0%
!! GGCATCGGTGACTGGTTTGG+AGG + chr8_3:4981772-4981791 None:intergenic 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG + chr8_3:4981775-4981794 None:intergenic 60.0%
!! CTGATGGAGGCATCGGTGAC+TGG + chr8_3:4981780-4981799 None:intergenic 60.0%
!! AAACGACATGGAGAGCGCCG+AGG - chr8_3:4983963-4983982 Msa1271510:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 4980790 4984715 4980790 ID=Msa1271510;Name=Msa1271510
chr8_3 mRNA 4980790 4984715 4980790 ID=Msa1271510-mRNA-1;Parent=Msa1271510;Name=Msa1271510-mRNA-1;_AED=0.03;_eAED=0.05;_QI=0|0.5|0.33|1|0.5|0.33|3|1234|336
chr8_3 exon 4980790 4982581 4980790 ID=Msa1271510-mRNA-1:exon:1711;Parent=Msa1271510-mRNA-1
chr8_3 exon 4984191 4984403 4984191 ID=Msa1271510-mRNA-1:exon:1710;Parent=Msa1271510-mRNA-1
chr8_3 exon 4984476 4984715 4984476 ID=Msa1271510-mRNA-1:exon:1709;Parent=Msa1271510-mRNA-1
chr8_3 CDS 4984476 4984715 4984476 ID=Msa1271510-mRNA-1:cds;Parent=Msa1271510-mRNA-1
chr8_3 CDS 4984191 4984403 4984191 ID=Msa1271510-mRNA-1:cds;Parent=Msa1271510-mRNA-1
chr8_3 CDS 4982024 4982581 4982024 ID=Msa1271510-mRNA-1:cds;Parent=Msa1271510-mRNA-1
chr8_3 three_prime_UTR 4980790 4982023 4980790 ID=Msa1271510-mRNA-1:three_prime_utr;Parent=Msa1271510-mRNA-1
Gene Sequence

>Msa1271510

ATGGGTATTGCTTTGACTGTAGTGAATCTGCATCCAAAGTGGACCCTATCATATCTATCTATCTCAAATCCAAACATCATTATTATCTTCAACAAACAACATTGGCAACAAAACATTGTGACTGAGAAAATGATGACTACTATTACCCCTCTTCAAATTCAATCTTCTTTACAAAACCAAAACGTTTCTCTTTCCCTTTCTTATTCTCATACTCTTCCCCCCTTCAAACAAAGGGTCAATATTCACAGTTATGGTACACTTGATTATGAGAGAAAACCCAATTTGAAATGGAATGCTATATACAAGAGGATTTCGATGATGGAGAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATCAATGGGAGAATGAAGGAAGGAATCTCACCAAATGGGAACTTTGCAGAGTTGTTAAAGAGTTGAGAAAGTACAGAAAACATGATAGAGCTCTTCAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAATATCTGCAAGTGACGTTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAGGTTTTTTTCTGAACCTAACCAATGATTTAAAAGACAAGAGAACATATGGTGCCCTCTTGAATGCATATGTTCATTCTAGATCAAGAGAAAAGGCAGAATCTTTACTCGAAGTAATGAGGAGTAAAAGGTACTTAATACATTCACTACCGTTTAATTTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTGTCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTTTTTGAACAGATGTCAAAGGATCCTACCATTATTCCTAATTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAGGCCGAGGGTAGAATATTAG

Protein sequence

>Msa1271510

MGIALTVVNLHPKWTLSYLSISNPNIIIIFNKQHWQQNIVTEKMMTTITPLQIQSSLQNQNVSLSLSYSHTLPPFKQRVNIHSYGTLDYERKPNLKWNAIYKRISMMENPELGSASVLNQWENEGRNLTKWELCRVVKELRKYRKHDRALQVYDWMNNRPERFRISASDVAIQLDLIARVHGVSSAEGFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLIHSLPFNLMMTLYMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMSKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKRPRVEY*