Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075190 | sp|Q66GN3|NPGR2_ARATH | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 799 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075190 | A0A072VWM1 | 96.634 | 713 | 24 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045790 | Msa0075190 | 0.809989 | 1.440388e-50 | -8.615850e-47 |
Msa0046100 | Msa0075190 | 0.817001 | 4.134732e-52 | -8.615850e-47 |
Msa0046160 | Msa0075190 | 0.805426 | 1.342557e-49 | -8.615850e-47 |
Msa0075190 | Msa0123100 | 0.843083 | 1.742233e-58 | -8.615850e-47 |
Msa0075190 | Msa0410650 | 0.811146 | 8.100852e-51 | -8.615850e-47 |
Msa0075190 | Msa0417880 | 0.801524 | 8.644573e-49 | -8.615850e-47 |
Msa0075190 | Msa0507680 | 0.808719 | 2.697447e-50 | -8.615850e-47 |
Msa0075190 | Msa0509610 | 0.807274 | 5.476599e-50 | -8.615850e-47 |
Msa0075190 | Msa0683510 | 0.813076 | 3.073304e-51 | -8.615850e-47 |
Msa0075190 | Msa0816710 | 0.811796 | 5.853394e-51 | -8.615850e-47 |
Msa0075190 | Msa1085200 | 0.813837 | 2.090590e-51 | -8.615850e-47 |
Msa0075190 | Msa1236100 | 0.811679 | 6.204459e-51 | -8.615850e-47 |
Msa0075190 | Msa1394380 | 0.803261 | 3.792614e-49 | -8.615850e-47 |
Msa0075190 | Msa1460020 | 0.802159 | 6.403161e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075190 | MtrunA17_Chr1g0183461 | 96.634 | 713 | 24 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
Msa0075190 | MtrunA17_Chr7g0261581 | 68.436 | 716 | 220 | 3 | 1 | 713 | 16 | 728 | 0.0 | 980 |
Msa0075190 | MtrunA17_Chr1g0187271 | 57.719 | 719 | 290 | 7 | 1 | 713 | 22 | 732 | 0.0 | 786 |
Msa0075190 | MtrunA17_Chr1g0152501 | 44.028 | 720 | 381 | 12 | 6 | 712 | 6 | 716 | 0.0 | 537 |
Msa0075190 | MtrunA17_Chr5g0409291 | 49.554 | 561 | 279 | 3 | 40 | 600 | 26 | 582 | 1.04e-174 | 513 |
Msa0075190 | MtrunA17_Chr8g0369551 | 46.207 | 580 | 308 | 3 | 29 | 608 | 10 | 585 | 3.14e-168 | 496 |
Msa0075190 | MtrunA17_Chr8g0369541 | 40.000 | 105 | 60 | 1 | 608 | 712 | 20 | 121 | 7.74e-20 | 85.9 |
Msa0075190 | MtrunA17_Chr5g0409281 | 40.952 | 105 | 58 | 2 | 609 | 712 | 9 | 110 | 2.01e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0075190 | AT4G28600.1 | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 799 |
Msa0075190 | AT4G28600.2 | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 799 |
Msa0075190 | AT4G28600.3 | 58.287 | 724 | 287 | 4 | 1 | 713 | 25 | 744 | 0.0 | 793 |
Msa0075190 | AT2G43040.2 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 569 |
Msa0075190 | AT2G43040.1 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 569 |
Msa0075190 | AT1G27460.3 | 41.399 | 715 | 380 | 10 | 6 | 712 | 6 | 689 | 1.15e-164 | 490 |
Msa0075190 | AT1G27460.1 | 41.818 | 715 | 381 | 10 | 6 | 712 | 6 | 693 | 1.31e-164 | 490 |
Msa0075190 | AT1G27460.2 | 42.545 | 550 | 292 | 8 | 6 | 547 | 6 | 539 | 1.15e-126 | 387 |
Find 200 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCGGCGTTCTTTGTTTC+TGG | 0.051091 | 1_2:+50310487 | None:intergenic |
TGACAAATATGATTTGTATT+TGG | 0.180768 | 1_2:-50307717 | Msa0075190:three_prime_UTR |
TTTCCGGTTCACCATGATTA+TGG | 0.184771 | 1_2:+50310456 | None:intergenic |
TTCATTTGCTCTGTCTGTTT+CGG | 0.188123 | 1_2:-50309578 | Msa0075190:CDS |
TCATTTGCTCTGTCTGTTTC+GGG | 0.193859 | 1_2:-50309577 | Msa0075190:CDS |
ATCGAGTTTAGCCAATTATT+TGG | 0.205375 | 1_2:-50309548 | Msa0075190:CDS |
TACCCTCAGCCTTGTGAAAA+AGG | 0.205859 | 1_2:+50308062 | None:intergenic |
CAGGCTCTTGAAAGGTTTAA+AGG | 0.236026 | 1_2:-50310374 | Msa0075190:intron |
CTATTATAGAAAAGTAATTA+AGG | 0.239293 | 1_2:-50311565 | Msa0075190:five_prime_UTR |
ATCATCTGCACACTCAAAAT+TGG | 0.251662 | 1_2:-50309239 | Msa0075190:CDS |
CCAATCTTGCAAAGTTATTA+TGG | 0.251753 | 1_2:-50309989 | Msa0075190:CDS |
CATTCAGCACCAAAGTTATC+AGG | 0.259185 | 1_2:+50309934 | None:intergenic |
ACACGTTCCCGGTTTGTTAA+TGG | 0.260326 | 1_2:-50309392 | Msa0075190:CDS |
GGCGAGCACTTCTTCATAAA+TGG | 0.260430 | 1_2:-50309819 | Msa0075190:CDS |
TTTGTCAATTTGTATTTCTT+TGG | 0.265129 | 1_2:+50307733 | None:intergenic |
GAGTAATTCTTCCAAATAAT+TGG | 0.272977 | 1_2:+50309537 | None:intergenic |
CCATAATAACTTTGCAAGAT+TGG | 0.280709 | 1_2:+50309989 | None:intergenic |
CGGATGAGGGGTTTGGAGTT+TGG | 0.285069 | 1_2:+50311740 | None:intergenic |
CCATTTGAGAACGTAGATTA+GGG | 0.289798 | 1_2:+50309716 | None:intergenic |
TTCTGCTTCTTCTATATTAC+CGG | 0.290062 | 1_2:+50311085 | None:intergenic |
TCAGCAAGCTTCCACAATTC+TGG | 0.299846 | 1_2:+50309871 | None:intergenic |
GCCTCTTCTATGTTGTTTGC+CGG | 0.304221 | 1_2:+50309679 | None:intergenic |
CAAATTCAGAGCAAAAGTTT+TGG | 0.314010 | 1_2:-50308824 | Msa0075190:CDS |
TGCAAAGTGCGTCATAAAAC+TGG | 0.329264 | 1_2:-50309062 | Msa0075190:CDS |
AACAAACCGGGAACGTGTTC+CGG | 0.330656 | 1_2:+50309397 | None:intergenic |
TTCCGGTTCACCATGATTAT+GGG | 0.345463 | 1_2:+50310457 | None:intergenic |
AAGAAAGCTATAAATAAATA+AGG | 0.346516 | 1_2:-50307807 | Msa0075190:three_prime_UTR |
CTCTAGAACACAACCCTTTG+AGG | 0.353424 | 1_2:+50307939 | None:intergenic |
TTCTTGGAAGAAGCTATATA+AGG | 0.353884 | 1_2:-50308801 | Msa0075190:intron |
GATCTAGCTCTTTGTAATTA+CGG | 0.355641 | 1_2:-50309481 | Msa0075190:CDS |
GAAAGGCCGGAACACGTTCC+CGG | 0.359395 | 1_2:-50309403 | Msa0075190:CDS |
TCTAAAAGCAAAATCGTTGC+AGG | 0.362819 | 1_2:-50310393 | Msa0075190:CDS |
GGAAGATACGAGTATCAAAA+AGG | 0.369028 | 1_2:-50310587 | Msa0075190:CDS |
GAGGGGTTTGGAGTTTGGTT+TGG | 0.369356 | 1_2:+50311745 | None:intergenic |
TACTGAAGGGTCTCTCATTC+CGG | 0.371242 | 1_2:+50309144 | None:intergenic |
AATGGACGGCTCGTTTGTTC+CGG | 0.372709 | 1_2:-50309698 | Msa0075190:CDS |
CATAATAACTTTGCAAGATT+GGG | 0.372836 | 1_2:+50309990 | None:intergenic |
GTTTGGAGTTTGGTTTGGTT+TGG | 0.374752 | 1_2:+50311750 | None:intergenic |
GGAACTTGGAAGTGGAAATA+TGG | 0.379485 | 1_2:-50308584 | Msa0075190:CDS |
CATAGGAGAAGAGGTGAATC+TGG | 0.381742 | 1_2:-50311260 | Msa0075190:five_prime_UTR |
TGAATCTTTGCTACAGTCCC+TGG | 0.383146 | 1_2:+50309787 | None:intergenic |
GTGCGCACGGATGAGGGGTT+TGG | 0.383192 | 1_2:+50311733 | None:intergenic |
GAAGGTGGTTCCAATGTTAA+AGG | 0.388143 | 1_2:-50309040 | Msa0075190:CDS |
GTGAAGCTACTTTGTCTTAC+CGG | 0.388356 | 1_2:-50309840 | Msa0075190:CDS |
AATGTTGCAAAATTCTATCT+TGG | 0.388770 | 1_2:-50309268 | Msa0075190:CDS |
CTTTGGATCAGACTGGGAAA+TGG | 0.392510 | 1_2:-50308946 | Msa0075190:CDS |
TCAGAGAGCACTTGAGAGCT+TGG | 0.397172 | 1_2:-50309314 | Msa0075190:CDS |
GCGTTCTTTGTTTCTGGAAA+GGG | 0.399083 | 1_2:+50310493 | None:intergenic |
ATCTATTATCAACGCTGCTT+TGG | 0.399909 | 1_2:-50308963 | Msa0075190:CDS |
TCAGACTGGGAAATGGGATC+AGG | 0.402096 | 1_2:-50308939 | Msa0075190:CDS |
GCTTCTGCTTGGTATAATCT+TGG | 0.405820 | 1_2:-50308085 | Msa0075190:CDS |
TGGTTTGGTTTGTGAGAGAG+TGG | 0.407754 | 1_2:+50311770 | None:intergenic |
CCTACGCTCAGGGGAGCAAT+TGG | 0.409024 | 1_2:-50311216 | Msa0075190:CDS |
AAGTTATCAGGCAAGCCTTC+AGG | 0.409413 | 1_2:+50309946 | None:intergenic |
ACAGAATGTATAGACATTTC+CGG | 0.415399 | 1_2:+50310440 | None:intergenic |
TCCATTTGAGAACGTAGATT+AGG | 0.418331 | 1_2:+50309715 | None:intergenic |
CCGAGATCGTGCTAGGAACT+TGG | 0.420476 | 1_2:-50308598 | Msa0075190:CDS |
TTTAGAAGCCATTAACAAAC+CGG | 0.423076 | 1_2:+50309384 | None:intergenic |
TATTATAGAAAAGTAATTAA+GGG | 0.428070 | 1_2:-50311564 | Msa0075190:five_prime_UTR |
GAGTTTGGTTTGGTTTGGTT+TGG | 0.428467 | 1_2:+50311755 | None:intergenic |
TGGTGCTGAATGTAAATTGC+AGG | 0.428911 | 1_2:-50309923 | Msa0075190:CDS |
ATCTGAGGCACTTCAAGCCT+TGG | 0.438993 | 1_2:-50309185 | Msa0075190:CDS |
TCTCTCTCAATAGAATTGAA+TGG | 0.439125 | 1_2:-50309624 | Msa0075190:CDS |
GAATTTCTCGAAATCAGAAA+TGG | 0.439970 | 1_2:+50309216 | None:intergenic |
GTACTTCAGCAGTGGAGATT+AGG | 0.444856 | 1_2:+50308185 | None:intergenic |
CATGGAATCTTTCACTTCGA+TGG | 0.444879 | 1_2:+50309503 | None:intergenic |
ACCCCTTCTTCTGCAAGACT+AGG | 0.448007 | 1_2:+50309346 | None:intergenic |
GAAAAGTAATTAAGGGAGAA+AGG | 0.449801 | 1_2:-50311557 | Msa0075190:five_prime_UTR |
TTCCCATAATCATGGTGAAC+CGG | 0.454699 | 1_2:-50310459 | Msa0075190:CDS |
TTTGGATCAGACTGGGAAAT+GGG | 0.455022 | 1_2:-50308945 | Msa0075190:CDS |
CTCTCTCAATAGAATTGAAT+GGG | 0.455430 | 1_2:-50309623 | Msa0075190:CDS |
GGCGTTCTTTGTTTCTGGAA+AGG | 0.457269 | 1_2:+50310492 | None:intergenic |
GGCGTGTCTTTCAAAATCTA+AGG | 0.457296 | 1_2:-50308511 | Msa0075190:CDS |
GTAAGTAAAGTGGAAGATCT+AGG | 0.459735 | 1_2:+50311691 | None:intergenic |
CCCCTTCTTCTGCAAGACTA+GGG | 0.461370 | 1_2:+50309347 | None:intergenic |
CGGAGCAGGTAAGGACTTGA+TGG | 0.465727 | 1_2:-50309461 | Msa0075190:CDS |
CCCTAATCTACGTTCTCAAA+TGG | 0.465907 | 1_2:-50309716 | Msa0075190:CDS |
ATTAGGCTGCGGACATGGCC+AGG | 0.467685 | 1_2:+50308202 | None:intergenic |
CAAAGTTATTATGGACATAG+TGG | 0.467812 | 1_2:-50309980 | Msa0075190:CDS |
ACGCCTCTGCATCATGCCAC+TGG | 0.468078 | 1_2:+50308529 | None:intergenic |
GAAGGCTTGCCTGATAACTT+TGG | 0.468639 | 1_2:-50309943 | Msa0075190:CDS |
GGTTTGGTTTGTGAGAGAGT+GGG | 0.470978 | 1_2:+50311771 | None:intergenic |
CATAAATGGAATCTCGATCC+AGG | 0.473610 | 1_2:-50309805 | Msa0075190:CDS |
CATCCGAATCTCTTGTCACC+AGG | 0.475993 | 1_2:-50311169 | Msa0075190:CDS |
CTACGCTCAGGGGAGCAATT+GGG | 0.477613 | 1_2:-50311215 | Msa0075190:CDS |
TAAAGAGAAAATGAAGAGAA+TGG | 0.477756 | 1_2:+50311641 | None:intergenic |
GTCCCTGGTGACAAGAGATT+CGG | 0.477939 | 1_2:+50311166 | None:intergenic |
ACAATGAAGTTCCTACGCTC+AGG | 0.478204 | 1_2:-50311227 | Msa0075190:CDS |
CAGTAACCATCCTTTAACAT+TGG | 0.480051 | 1_2:+50309030 | None:intergenic |
GTCTTTGAGGGAATAGATAT+AGG | 0.481239 | 1_2:-50310542 | Msa0075190:CDS |
TAAGGGAGAAAGGTTCTCTT+CGG | 0.481339 | 1_2:-50311547 | Msa0075190:five_prime_UTR |
GAACAAGGTGCGCACGGATG+AGG | 0.482666 | 1_2:+50311726 | None:intergenic |
AACCCTAGTCTTGCAGAAGA+AGG | 0.483388 | 1_2:-50309349 | Msa0075190:CDS |
CAGGAAGCTAGAGCATTACT+AGG | 0.486649 | 1_2:-50310608 | Msa0075190:CDS |
CGTTCTGCCAGCAGTTTCCA+AGG | 0.488431 | 1_2:+50309168 | None:intergenic |
TGAGGGTAAAATATCATCAT+TGG | 0.491744 | 1_2:-50308047 | Msa0075190:CDS |
GATGGAAATTGTAAGTAAAG+TGG | 0.492204 | 1_2:+50311681 | None:intergenic |
TATTTGGAAGAATTACTCCC+TGG | 0.494270 | 1_2:-50309532 | Msa0075190:CDS |
GTGACAAGAGATTCGGATGA+AGG | 0.497025 | 1_2:+50311173 | None:intergenic |
GAAACTGCTGGCAGAACGAC+CGG | 0.498236 | 1_2:-50309163 | Msa0075190:CDS |
GCTCTTTGTAATTACGGAGC+AGG | 0.499405 | 1_2:-50309475 | Msa0075190:CDS |
GATGCTTTAGACATTGATCC+TGG | 0.500078 | 1_2:-50308220 | Msa0075190:CDS |
TTGTAATTACGGAGCAGGTA+AGG | 0.501729 | 1_2:-50309470 | Msa0075190:CDS |
TCACTTCGATGGATAGTCCC+AGG | 0.503053 | 1_2:+50309514 | None:intergenic |
AGCTGCATTACACGTCTTTG+AGG | 0.505490 | 1_2:-50310555 | Msa0075190:CDS |
ATATTCTATAAAACCTCAAA+GGG | 0.508646 | 1_2:-50307952 | Msa0075190:three_prime_UTR |
AATCGTTGCAGGCTCTTGAA+AGG | 0.510742 | 1_2:-50310382 | Msa0075190:CDS |
TTGAGCTGCTTCCAGAATTG+TGG | 0.513561 | 1_2:-50309882 | Msa0075190:CDS |
CGCCTCTGCATCATGCCACT+GGG | 0.513605 | 1_2:+50308530 | None:intergenic |
AACGCTGCTTTGGATCAGAC+TGG | 0.514212 | 1_2:-50308953 | Msa0075190:CDS |
AATTACAAAGAGCTAGATCA+TGG | 0.514312 | 1_2:+50309485 | None:intergenic |
GCTGCATTACACGTCTTTGA+GGG | 0.518869 | 1_2:-50310554 | Msa0075190:CDS |
CTGAGATGGTATAGTACTGA+AGG | 0.523029 | 1_2:+50309130 | None:intergenic |
CATATTCTATAAAACCTCAA+AGG | 0.523781 | 1_2:-50307953 | Msa0075190:three_prime_UTR |
AACAAGGTGCGCACGGATGA+GGG | 0.524738 | 1_2:+50311727 | None:intergenic |
ATTTGGAAGAATTACTCCCT+GGG | 0.525471 | 1_2:-50309531 | Msa0075190:CDS |
GAATTATCTCTGCGAGAAAG+TGG | 0.528266 | 1_2:-50311065 | Msa0075190:CDS |
TGGAGATTAGGCTGCGGACA+TGG | 0.529432 | 1_2:+50308197 | None:intergenic |
AAGAAACATTCCCATAATCA+TGG | 0.530663 | 1_2:-50310467 | Msa0075190:CDS |
AAGCTGAGTGTACGTCTCAA+TGG | 0.530685 | 1_2:+50308859 | None:intergenic |
CTTCAAGCCTTGGAAACTGC+TGG | 0.530954 | 1_2:-50309175 | Msa0075190:CDS |
ACCCTAGTCTTGCAGAAGAA+GGG | 0.531321 | 1_2:-50309348 | Msa0075190:CDS |
CCAAGTTCCTAGCACGATCT+CGG | 0.533706 | 1_2:+50308598 | None:intergenic |
GAAAGGTGGTCTAAAATTGA+AGG | 0.534995 | 1_2:+50309598 | None:intergenic |
ACCTTGCTGTCATCATGCAG+TGG | 0.536851 | 1_2:+50307639 | None:intergenic |
GGAAATGTCTATACATTCTG+TGG | 0.537831 | 1_2:-50310438 | Msa0075190:CDS |
AATTGTTGAGTGATAGAGAA+AGG | 0.538244 | 1_2:-50309420 | Msa0075190:CDS |
AGGCGTAATGTATGAAGCAA+AGG | 0.544212 | 1_2:-50308275 | Msa0075190:CDS |
AGAGCACTTGAGAGCTTGGA+CGG | 0.546004 | 1_2:-50309310 | Msa0075190:CDS |
TCGTGCTAGGAACTTGGAAG+TGG | 0.547148 | 1_2:-50308592 | Msa0075190:CDS |
CCTTGCTGTCATCATGCAGT+GGG | 0.548501 | 1_2:+50307640 | None:intergenic |
AGTGATCATTCTTTCCTACC+TGG | 0.549462 | 1_2:-50311131 | Msa0075190:CDS |
GGCGTAATGTATGAAGCAAA+GGG | 0.550921 | 1_2:-50308274 | Msa0075190:CDS |
AATAATTGGCTAAACTCGAT+AGG | 0.551034 | 1_2:+50309551 | None:intergenic |
TATAGAATATGTCATCTGAA+AGG | 0.552996 | 1_2:+50307965 | None:intergenic |
CAATGAAGTTCCTACGCTCA+GGG | 0.553279 | 1_2:-50311226 | Msa0075190:CDS |
GCTAAAGTTCAAATTGCACT+TGG | 0.553493 | 1_2:-50308896 | Msa0075190:CDS |
CTCAAAGGGTTGTGTTCTAG+AGG | 0.557066 | 1_2:-50307938 | Msa0075190:three_prime_UTR |
GGGAGAAAGGTTCTCTTCGG+AGG | 0.557701 | 1_2:-50311544 | Msa0075190:five_prime_UTR |
TGACATCTAGAAGCAGAATA+CGG | 0.557828 | 1_2:+50308480 | None:intergenic |
ACAGATTGAATGCTTCTGCT+TGG | 0.559962 | 1_2:-50308096 | Msa0075190:CDS |
CAGACTGGGAAATGGGATCA+GGG | 0.561941 | 1_2:-50308938 | Msa0075190:CDS |
GTTGAGTGATAGAGAAAGGC+CGG | 0.563279 | 1_2:-50309416 | Msa0075190:CDS |
CCCTAGTCTTGCAGAAGAAG+GGG | 0.568534 | 1_2:-50309347 | Msa0075190:CDS |
GTGGTTCCAATGTTAAAGGA+TGG | 0.575049 | 1_2:-50309036 | Msa0075190:CDS |
GGAGAAAGGTTCTCTTCGGA+GGG | 0.575124 | 1_2:-50311543 | Msa0075190:five_prime_UTR |
TTCCCAGTGGCATGATGCAG+AGG | 0.575200 | 1_2:-50308532 | Msa0075190:CDS |
CACTTCGATGGATAGTCCCA+GGG | 0.576038 | 1_2:+50309515 | None:intergenic |
GAATGAGAAATGAAATGAGA+TGG | 0.576105 | 1_2:+50311663 | None:intergenic |
AAAGTATGACATAGGAGAAG+AGG | 0.577520 | 1_2:-50311269 | Msa0075190:five_prime_UTR |
TGGAAAACTTGATCACAAGT+TGG | 0.577745 | 1_2:-50311111 | Msa0075190:CDS |
AGGGTAACCGAGATCGTGCT+AGG | 0.578066 | 1_2:-50308605 | Msa0075190:CDS |
ACTTCCTGAAAAGAAGTCCC+TGG | 0.578708 | 1_2:+50311151 | None:intergenic |
CAGCGTATTCTAAACTGAGA+TGG | 0.582160 | 1_2:+50309116 | None:intergenic |
GAAGAAGAACAAGGTGCGCA+CGG | 0.590592 | 1_2:+50311720 | None:intergenic |
TGTGAGAGAGTGGGGTCCAG+TGG | 0.591367 | 1_2:+50311780 | None:intergenic |
GTTTGGTTTGTGAGAGAGTG+GGG | 0.592439 | 1_2:+50311772 | None:intergenic |
AAGGATGGTTACTGTTGGCA+CGG | 0.592491 | 1_2:-50309021 | Msa0075190:CDS |
TAAATACTAAAATCATCCAC+TGG | 0.593564 | 1_2:-50311796 | None:intergenic |
TAGTGCTGAAAGTATGACAT+AGG | 0.595411 | 1_2:-50311277 | Msa0075190:five_prime_UTR |
CAGCTCAACTGCCTTGCTCA+CGG | 0.599337 | 1_2:+50309897 | None:intergenic |
GATTATGGGAATGTTTCTTG+CGG | 0.600308 | 1_2:+50310471 | None:intergenic |
GTGGAATCTTCATTGCCTGA+AGG | 0.600900 | 1_2:-50309961 | Msa0075190:CDS |
TTAGAAGCCATTAACAAACC+GGG | 0.606436 | 1_2:+50309385 | None:intergenic |
ATAAATGGAATCTCGATCCA+GGG | 0.607813 | 1_2:-50309804 | Msa0075190:CDS |
ATTGCAGGAGACCGTGAGCA+AGG | 0.607861 | 1_2:-50309908 | Msa0075190:CDS |
ATTTATGAAGAAGTGCTCGC+CGG | 0.609816 | 1_2:+50309821 | None:intergenic |
TGTCATCTGAAAGGTTCAAG+TGG | 0.610618 | 1_2:+50307974 | None:intergenic |
ACGCTGCTTTGGATCAGACT+GGG | 0.611127 | 1_2:-50308952 | Msa0075190:CDS |
TGAGATGGTATAGTACTGAA+GGG | 0.615082 | 1_2:+50309131 | None:intergenic |
CCAATTGCTCCCCTGAGCGT+AGG | 0.615359 | 1_2:+50311216 | None:intergenic |
CGCTCAGGGGAGCAATTGGG+AGG | 0.616293 | 1_2:-50311212 | Msa0075190:CDS |
AGGTAAGGACTTGATGGCAA+TGG | 0.618555 | 1_2:-50309455 | Msa0075190:CDS |
GCGTCTAAGTACTTCAGCAG+TGG | 0.622569 | 1_2:+50308177 | None:intergenic |
AGCAAAGGGCCTTTACAAAG+AGG | 0.624063 | 1_2:-50308260 | Msa0075190:CDS |
ACAAGGTGCGCACGGATGAG+GGG | 0.624418 | 1_2:+50311728 | None:intergenic |
AAGTGCGTCATAAAACTGGA+AGG | 0.625420 | 1_2:-50309058 | Msa0075190:CDS |
AAACAGACAGAGCAAATGAA+AGG | 0.626924 | 1_2:+50309581 | None:intergenic |
GTTTAGAATACGCTGAACAA+AGG | 0.629222 | 1_2:-50309108 | Msa0075190:CDS |
GAAATGTCTATACATTCTGT+GGG | 0.629408 | 1_2:-50310437 | Msa0075190:CDS |
TGTTAAAGGATGGTTACTGT+TGG | 0.631562 | 1_2:-50309026 | Msa0075190:CDS |
ATCCGAATCTCTTGTCACCA+GGG | 0.633299 | 1_2:-50311168 | Msa0075190:CDS |
ATTTGAGAACGTAGATTAGG+GGG | 0.633365 | 1_2:+50309718 | None:intergenic |
AATCTACGTTCTCAAATGGA+CGG | 0.634441 | 1_2:-50309712 | Msa0075190:CDS |
AAAGCTATAAATAAATAAGG+TGG | 0.639238 | 1_2:-50307804 | Msa0075190:three_prime_UTR |
GCTTCTAGATGTCATGCACT+CGG | 0.643649 | 1_2:-50308471 | Msa0075190:intron |
CTTGATCACAAGTTGGACAC+CGG | 0.647590 | 1_2:-50311104 | Msa0075190:CDS |
TCCGGCAAACAACATAGAAG+AGG | 0.651451 | 1_2:-50309680 | Msa0075190:CDS |
AGAAGAGGTGAATCTGGACA+AGG | 0.654473 | 1_2:-50311254 | Msa0075190:five_prime_UTR |
CATTTGAGAACGTAGATTAG+GGG | 0.654581 | 1_2:+50309717 | None:intergenic |
CAGCAGTGGAGATTAGGCTG+CGG | 0.655573 | 1_2:+50308191 | None:intergenic |
GAAATTCAAGAGACAATCTG+AGG | 0.658610 | 1_2:-50309200 | Msa0075190:CDS |
AGGAAAGAAGAAGAAGAACA+AGG | 0.663454 | 1_2:+50311711 | None:intergenic |
CAGACAGAGCAAATGAAAGG+TGG | 0.667903 | 1_2:+50309584 | None:intergenic |
GAGGTGAATCTGGACAAGGA+AGG | 0.672537 | 1_2:-50311250 | Msa0075190:five_prime_UTR |
TGCGTCATAAAACTGGAAGG+TGG | 0.682113 | 1_2:-50309055 | Msa0075190:CDS |
AATGAAGTTCCTACGCTCAG+GGG | 0.692085 | 1_2:-50311225 | Msa0075190:CDS |
TGTACATCAGTCTTTCCCAG+TGG | 0.736555 | 1_2:-50308545 | Msa0075190:CDS |
TAAGACAAAGTAGCTTCACG+AGG | 0.755950 | 1_2:+50309844 | None:intergenic |
AAGTGGCGTGTTAAACTACG+AGG | 0.762852 | 1_2:-50311048 | Msa0075190:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTATAGAAAAGTAATTAA+GGG | - | chr1_2:50307867-50307886 | Msa0075190:three_prime_UTR | 10.0% |
!!! | ATTAATAATAGTTTAGTTTA+GGG | - | chr1_2:50308075-50308094 | Msa0075190:CDS | 10.0% |
!! | CTATTATAGAAAAGTAATTA+AGG | - | chr1_2:50307866-50307885 | Msa0075190:three_prime_UTR | 15.0% |
!!! | GATTAATAATAGTTTAGTTT+AGG | - | chr1_2:50308074-50308093 | Msa0075190:CDS | 15.0% |
!!! | TTTTTCTTTTCAAATTTAAC+AGG | - | chr1_2:50311136-50311155 | Msa0075190:CDS | 15.0% |
!! | AAGAAAGCTATAAATAAATA+AGG | - | chr1_2:50311624-50311643 | Msa0075190:five_prime_UTR | 15.0% |
!!! | TTTTCTATAATAGCTTCAAT+AGG | + | chr1_2:50307859-50307878 | None:intergenic | 20.0% |
!! | TAAAACCAAGTTAATAAAAC+AGG | + | chr1_2:50307998-50308017 | None:intergenic | 20.0% |
!! | CATAATATATGAGCAAATTA+AGG | + | chr1_2:50308126-50308145 | None:intergenic | 20.0% |
!!! | TAAAAAAGTGAAGTATTTTG+AGG | + | chr1_2:50308416-50308435 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTGGTACATAGA+CGG | + | chr1_2:50308727-50308746 | None:intergenic | 20.0% |
!!! | TTTGTTTTCATAAACTATCT+TGG | + | chr1_2:50309280-50309299 | None:intergenic | 20.0% |
!! | GTGACTATAACTATTAAAAT+TGG | - | chr1_2:50310714-50310733 | Msa0075190:intron | 20.0% |
!! | ATATTCTATAAAACCTCAAA+GGG | - | chr1_2:50311479-50311498 | Msa0075190:intron | 20.0% |
!! | AAAGCTATAAATAAATAAGG+TGG | - | chr1_2:50311627-50311646 | Msa0075190:five_prime_UTR | 20.0% |
!!! | AAATATTTTGACAAGTTCTA+TGG | + | chr1_2:50311655-50311674 | None:intergenic | 20.0% |
!! | TTTGTCAATTTGTATTTCTT+TGG | + | chr1_2:50311701-50311720 | None:intergenic | 20.0% |
!!! | TGACAAATATGATTTGTATT+TGG | - | chr1_2:50311714-50311733 | Msa0075190:five_prime_UTR | 20.0% |
! | TAAAGAGAAAATGAAGAGAA+TGG | + | chr1_2:50307793-50307812 | None:intergenic | 25.0% |
!!! | TTGTTCCTGTTTTATTAACT+TGG | - | chr1_2:50307990-50308009 | Msa0075190:CDS | 25.0% |
! | TTATTCATGAACTATCTTGA+TGG | - | chr1_2:50308052-50308071 | Msa0075190:CDS | 25.0% |
!!! | CACTTTTTTAAGTTATCATG+TGG | - | chr1_2:50308426-50308445 | Msa0075190:intron | 25.0% |
!! | TAAGTTATCATGTGGATTTT+TGG | - | chr1_2:50308434-50308453 | Msa0075190:intron | 25.0% |
! | TTGTAGCTACTATTCTAATT+TGG | - | chr1_2:50308777-50308796 | Msa0075190:intron | 25.0% |
! | AAACTATCTTGGATATCTAA+TGG | + | chr1_2:50309269-50309288 | None:intergenic | 25.0% |
! | CATAATAACTTTGCAAGATT+GGG | + | chr1_2:50309444-50309463 | None:intergenic | 25.0% |
!!! | GTTGTTTTTCTTCTATATAG+TGG | - | chr1_2:50309677-50309696 | Msa0075190:CDS | 25.0% |
!!! | TTTTTCTTCTATATAGTGGA+GGG | - | chr1_2:50309681-50309700 | Msa0075190:CDS | 25.0% |
! | GAGTAATTCTTCCAAATAAT+TGG | + | chr1_2:50309897-50309916 | None:intergenic | 25.0% |
! | AATGTTGCAAAATTCTATCT+TGG | - | chr1_2:50310163-50310182 | Msa0075190:intron | 25.0% |
! | AAATATTCAATCAGTACAAG+TGG | + | chr1_2:50310669-50310688 | None:intergenic | 25.0% |
! | AAATTGGATAAATGTTTCAC+TGG | - | chr1_2:50310730-50310749 | Msa0075190:intron | 25.0% |
! | TCACAAATGGTATAGATAAA+AGG | + | chr1_2:50310805-50310824 | None:intergenic | 25.0% |
! | TTATCTATACCATTTGTGAT+AGG | - | chr1_2:50310806-50310825 | Msa0075190:intron | 25.0% |
! | TATCTATACCATTTGTGATA+GGG | - | chr1_2:50310807-50310826 | Msa0075190:intron | 25.0% |
! | CATCTCAAGAAAAAGTTAAA+TGG | + | chr1_2:50311051-50311070 | None:intergenic | 25.0% |
!!! | CATTTAACTTTTTCTTGAGA+TGG | - | chr1_2:50311049-50311068 | Msa0075190:CDS | 25.0% |
! | TTCAAGTGATAATAATCTGT+TGG | + | chr1_2:50311083-50311102 | None:intergenic | 25.0% |
! | TATAGAATATGTCATCTGAA+AGG | + | chr1_2:50311469-50311488 | None:intergenic | 25.0% |
! | CATATTCTATAAAACCTCAA+AGG | - | chr1_2:50311478-50311497 | Msa0075190:intron | 25.0% |
!!! | CCTAAATCACGTTATTTTTA+TGG | + | chr1_2:50311770-50311789 | None:intergenic | 25.0% |
! | CCATAAAAATAACGTGATTT+AGG | - | chr1_2:50311767-50311786 | Msa0075190:five_prime_UTR | 25.0% |
GATGGAAATTGTAAGTAAAG+TGG | + | chr1_2:50307753-50307772 | None:intergenic | 30.0% | |
GAATGAGAAATGAAATGAGA+TGG | + | chr1_2:50307771-50307790 | None:intergenic | 30.0% | |
GAAAAGTAATTAAGGGAGAA+AGG | - | chr1_2:50307874-50307893 | Msa0075190:three_prime_UTR | 30.0% | |
!!! | AAGGGTACGTTTTTTTATAC+TGG | - | chr1_2:50307920-50307939 | Msa0075190:three_prime_UTR | 30.0% |
AAAATAGAGGTAATTCAGCT+GGG | + | chr1_2:50307966-50307985 | None:intergenic | 30.0% | |
AAAAATAGAGGTAATTCAGC+TGG | + | chr1_2:50307967-50307986 | None:intergenic | 30.0% | |
!!! | GCTGAATTACCTCTATTTTT+TGG | - | chr1_2:50307967-50307986 | Msa0075190:exon | 30.0% |
! | GTTTAGTTTAGGGACTAAAT+TGG | - | chr1_2:50308085-50308104 | Msa0075190:CDS | 30.0% |
TTCTGCTTCTTCTATATTAC+CGG | + | chr1_2:50308349-50308368 | None:intergenic | 30.0% | |
!! | TGGATTTTTGGATATGCATT+TGG | - | chr1_2:50308446-50308465 | Msa0075190:intron | 30.0% |
ATTCAGCGTTTGTAGAATTA+AGG | - | chr1_2:50308481-50308500 | Msa0075190:CDS | 30.0% | |
AATAAGCTGTTTATCCAAAC+AGG | + | chr1_2:50308507-50308526 | None:intergenic | 30.0% | |
AAAATATGCATGCAATCTAC+AGG | - | chr1_2:50308804-50308823 | Msa0075190:CDS | 30.0% | |
AAGAAACATTCCCATAATCA+TGG | - | chr1_2:50308964-50308983 | Msa0075190:CDS | 30.0% | |
ACAGAATGTATAGACATTTC+CGG | + | chr1_2:50308994-50309013 | None:intergenic | 30.0% | |
GAAATGTCTATACATTCTGT+GGG | - | chr1_2:50308994-50309013 | Msa0075190:CDS | 30.0% | |
TAAGAATCAAAAAACCAGCA+AGG | + | chr1_2:50309086-50309105 | None:intergenic | 30.0% | |
!!! | CTCTCTTTTTTTGTATGTCA+AGG | - | chr1_2:50309112-50309131 | Msa0075190:CDS | 30.0% |
TTTGTATGTCAAGGAATTTG+TGG | - | chr1_2:50309121-50309140 | Msa0075190:CDS | 30.0% | |
TAGCATATACGAAAACAGAT+TGG | - | chr1_2:50309352-50309371 | Msa0075190:CDS | 30.0% | |
!! | AGATTGGTTTCAATAACCAT+AGG | - | chr1_2:50309368-50309387 | Msa0075190:CDS | 30.0% |
CCATAATAACTTTGCAAGAT+TGG | + | chr1_2:50309445-50309464 | None:intergenic | 30.0% | |
CCAATCTTGCAAAGTTATTA+TGG | - | chr1_2:50309442-50309461 | Msa0075190:CDS | 30.0% | |
CAAAGTTATTATGGACATAG+TGG | - | chr1_2:50309451-50309470 | Msa0075190:CDS | 30.0% | |
! | GTTTTTCTTCTATATAGTGG+AGG | - | chr1_2:50309680-50309699 | Msa0075190:CDS | 30.0% |
!! | TTTTCTTCTATATAGTGGAG+GGG | - | chr1_2:50309682-50309701 | Msa0075190:CDS | 30.0% |
TCTCTCTCAATAGAATTGAA+TGG | - | chr1_2:50309807-50309826 | Msa0075190:CDS | 30.0% | |
CTCTCTCAATAGAATTGAAT+GGG | - | chr1_2:50309808-50309827 | Msa0075190:CDS | 30.0% | |
AATAATTGGCTAAACTCGAT+AGG | + | chr1_2:50309883-50309902 | None:intergenic | 30.0% | |
ATCGAGTTTAGCCAATTATT+TGG | - | chr1_2:50309883-50309902 | Msa0075190:CDS | 30.0% | |
AATTACAAAGAGCTAGATCA+TGG | + | chr1_2:50309949-50309968 | None:intergenic | 30.0% | |
!! | GATCTAGCTCTTTGTAATTA+CGG | - | chr1_2:50309950-50309969 | Msa0075190:CDS | 30.0% |
AATTGTTGAGTGATAGAGAA+AGG | - | chr1_2:50310011-50310030 | Msa0075190:intron | 30.0% | |
TTTAGAAGCCATTAACAAAC+CGG | + | chr1_2:50310050-50310069 | None:intergenic | 30.0% | |
GAATTTCTCGAAATCAGAAA+TGG | + | chr1_2:50310218-50310237 | None:intergenic | 30.0% | |
! | ATCTGCTCAAAAACAGTTTT+TGG | - | chr1_2:50310438-50310457 | Msa0075190:CDS | 30.0% |
! | CAAATTCAGAGCAAAAGTTT+TGG | - | chr1_2:50310607-50310626 | Msa0075190:CDS | 30.0% |
TTCTTGGAAGAAGCTATATA+AGG | - | chr1_2:50310630-50310649 | Msa0075190:intron | 30.0% | |
! | GATTGAATATTTCTGCAGAA+TGG | - | chr1_2:50310677-50310696 | Msa0075190:intron | 30.0% |
TGAGGGTAAAATATCATCAT+TGG | - | chr1_2:50311384-50311403 | Msa0075190:intron | 30.0% | |
GGTAGAAGCAAAACAAAAAA+TGG | - | chr1_2:50311514-50311533 | Msa0075190:intron | 30.0% | |
AGGAAAGAAGAAGAAGAACA+AGG | + | chr1_2:50307723-50307742 | None:intergenic | 35.0% | |
GTAAGTAAAGTGGAAGATCT+AGG | + | chr1_2:50307743-50307762 | None:intergenic | 35.0% | |
CAGGAACAACCAAAAAATAG+AGG | + | chr1_2:50307979-50307998 | None:intergenic | 35.0% | |
! | TAGTGCTGAAAGTATGACAT+AGG | - | chr1_2:50308154-50308173 | Msa0075190:CDS | 35.0% |
AAAGTATGACATAGGAGAAG+AGG | - | chr1_2:50308162-50308181 | Msa0075190:CDS | 35.0% | |
! | AACTTGTGATCAAGTTTTCC+AGG | + | chr1_2:50308321-50308340 | None:intergenic | 35.0% |
TGGAAAACTTGATCACAAGT+TGG | - | chr1_2:50308320-50308339 | Msa0075190:intron | 35.0% | |
TTGTAGAATTAAGGCCTGTT+TGG | - | chr1_2:50308490-50308509 | Msa0075190:CDS | 35.0% | |
!! | TTTGTGTGTGAGTTTTCAAG+TGG | - | chr1_2:50308690-50308709 | Msa0075190:intron | 35.0% |
!! | TTTTTGGTACATAGACGGAA+TGG | + | chr1_2:50308722-50308741 | None:intergenic | 35.0% |
GGAAGATACGAGTATCAAAA+AGG | - | chr1_2:50308844-50308863 | Msa0075190:CDS | 35.0% | |
! | GTCTTTGAGGGAATAGATAT+AGG | - | chr1_2:50308889-50308908 | Msa0075190:CDS | 35.0% |
!! | GAAAGGGCAATTTTGATCTT+AGG | + | chr1_2:50308925-50308944 | None:intergenic | 35.0% |
GATTATGGGAATGTTTCTTG+CGG | + | chr1_2:50308963-50308982 | None:intergenic | 35.0% | |
GGAAATGTCTATACATTCTG+TGG | - | chr1_2:50308993-50309012 | Msa0075190:CDS | 35.0% | |
TCTAAAAGCAAAATCGTTGC+AGG | - | chr1_2:50309038-50309057 | Msa0075190:CDS | 35.0% | |
TGCAAAACAAGGTAGATTAC+GGG | + | chr1_2:50309175-50309194 | None:intergenic | 35.0% | |
GTGCAAAACAAGGTAGATTA+CGG | + | chr1_2:50309176-50309195 | None:intergenic | 35.0% | |
!!! | TAATCTACCTTGTTTTGCAC+TGG | - | chr1_2:50309176-50309195 | Msa0075190:CDS | 35.0% |
ACACTTTGACTAATGTCCTA+TGG | + | chr1_2:50309387-50309406 | None:intergenic | 35.0% | |
ATAAATGGAATCTCGATCCA+GGG | - | chr1_2:50309627-50309646 | Msa0075190:CDS | 35.0% | |
ATTTGAGAACGTAGATTAGG+GGG | + | chr1_2:50309716-50309735 | None:intergenic | 35.0% | |
CATTTGAGAACGTAGATTAG+GGG | + | chr1_2:50309717-50309736 | None:intergenic | 35.0% | |
CCATTTGAGAACGTAGATTA+GGG | + | chr1_2:50309718-50309737 | None:intergenic | 35.0% | |
TCCATTTGAGAACGTAGATT+AGG | + | chr1_2:50309719-50309738 | None:intergenic | 35.0% | |
AATCTACGTTCTCAAATGGA+CGG | - | chr1_2:50309719-50309738 | Msa0075190:CDS | 35.0% | |
! | GAAAGGTGGTCTAAAATTGA+AGG | + | chr1_2:50309836-50309855 | None:intergenic | 35.0% |
AAACAGACAGAGCAAATGAA+AGG | + | chr1_2:50309853-50309872 | None:intergenic | 35.0% | |
TTCATTTGCTCTGTCTGTTT+CGG | - | chr1_2:50309853-50309872 | Msa0075190:CDS | 35.0% | |
TATTTGGAAGAATTACTCCC+TGG | - | chr1_2:50309899-50309918 | Msa0075190:CDS | 35.0% | |
ATTTGGAAGAATTACTCCCT+GGG | - | chr1_2:50309900-50309919 | Msa0075190:CDS | 35.0% | |
TTAGAAGCCATTAACAAACC+GGG | + | chr1_2:50310049-50310068 | None:intergenic | 35.0% | |
ATCATCTGCACACTCAAAAT+TGG | - | chr1_2:50310192-50310211 | Msa0075190:intron | 35.0% | |
GAAATTCAAGAGACAATCTG+AGG | - | chr1_2:50310231-50310250 | Msa0075190:intron | 35.0% | |
! | TGAGATGGTATAGTACTGAA+GGG | + | chr1_2:50310303-50310322 | None:intergenic | 35.0% |
! | GTTTAGAATACGCTGAACAA+AGG | - | chr1_2:50310323-50310342 | Msa0075190:intron | 35.0% |
CAGTAACCATCCTTTAACAT+TGG | + | chr1_2:50310404-50310423 | None:intergenic | 35.0% | |
TGTTAAAGGATGGTTACTGT+TGG | - | chr1_2:50310405-50310424 | Msa0075190:CDS | 35.0% | |
!! | TGCTCAAAAACAGTTTTTGG+AGG | - | chr1_2:50310441-50310460 | Msa0075190:CDS | 35.0% |
ATCTATTATCAACGCTGCTT+TGG | - | chr1_2:50310468-50310487 | Msa0075190:CDS | 35.0% | |
GCTAAAGTTCAAATTGCACT+TGG | - | chr1_2:50310535-50310554 | Msa0075190:CDS | 35.0% | |
!!! | AGAGCAAAAGTTTTGGTTCT+TGG | - | chr1_2:50310614-50310633 | Msa0075190:intron | 35.0% |
TGACATCTAGAAGCAGAATA+CGG | + | chr1_2:50310954-50310973 | None:intergenic | 35.0% | |
!!! | CTTTTAGAGCCTCTTTGTAA+AGG | + | chr1_2:50311183-50311202 | None:intergenic | 35.0% |
!!! | TGCAGTCAGAACTTTTTTGA+CGG | - | chr1_2:50311297-50311316 | Msa0075190:intron | 35.0% |
!! | TAATCTTGGCCTTTTTCACA+AGG | - | chr1_2:50311360-50311379 | Msa0075190:intron | 35.0% |
!! | GAGTTTGGTTTGGTTTGGTT+TGG | + | chr1_2:50307679-50307698 | None:intergenic | 40.0% |
!! | GTTTGGAGTTTGGTTTGGTT+TGG | + | chr1_2:50307684-50307703 | None:intergenic | 40.0% |
TAAGGGAGAAAGGTTCTCTT+CGG | - | chr1_2:50307884-50307903 | Msa0075190:three_prime_UTR | 40.0% | |
! | TTCGGAGGGTTTTTGTTGAA+GGG | - | chr1_2:50307902-50307921 | Msa0075190:three_prime_UTR | 40.0% |
! | GCATCTCAATTTTCTGCTGT+CGG | - | chr1_2:50308024-50308043 | Msa0075190:CDS | 40.0% |
AGTGATCATTCTTTCCTACC+TGG | - | chr1_2:50308300-50308319 | Msa0075190:intron | 40.0% | |
! | TGTGATCAAGTTTTCCAGGT+AGG | + | chr1_2:50308317-50308336 | None:intergenic | 40.0% |
GAATTATCTCTGCGAGAAAG+TGG | - | chr1_2:50308366-50308385 | Msa0075190:intron | 40.0% | |
!! | GCGTTCTTTGTTTCTGGAAA+GGG | + | chr1_2:50308941-50308960 | None:intergenic | 40.0% |
TTCCCATAATCATGGTGAAC+CGG | - | chr1_2:50308972-50308991 | Msa0075190:CDS | 40.0% | |
TTCCGGTTCACCATGATTAT+GGG | + | chr1_2:50308977-50308996 | None:intergenic | 40.0% | |
TTTCCGGTTCACCATGATTA+TGG | + | chr1_2:50308978-50308997 | None:intergenic | 40.0% | |
CAGGCTCTTGAAAGGTTTAA+AGG | - | chr1_2:50309057-50309076 | Msa0075190:CDS | 40.0% | |
AGGTTTAAAGGTAACCTTGC+TGG | - | chr1_2:50309069-50309088 | Msa0075190:CDS | 40.0% | |
! | TTGTGGTTTTTCGCTGCATA+TGG | - | chr1_2:50309138-50309157 | Msa0075190:CDS | 40.0% |
CATTCAGCACCAAAGTTATC+AGG | + | chr1_2:50309500-50309519 | None:intergenic | 40.0% | |
! | TGGTGCTGAATGTAAATTGC+AGG | - | chr1_2:50309508-50309527 | Msa0075190:CDS | 40.0% |
TAAGACAAAGTAGCTTCACG+AGG | + | chr1_2:50309590-50309609 | None:intergenic | 40.0% | |
! | GTGAAGCTACTTTGTCTTAC+CGG | - | chr1_2:50309591-50309610 | Msa0075190:CDS | 40.0% |
!! | ATTTATGAAGAAGTGCTCGC+CGG | + | chr1_2:50309613-50309632 | None:intergenic | 40.0% |
CATAAATGGAATCTCGATCC+AGG | - | chr1_2:50309626-50309645 | Msa0075190:CDS | 40.0% | |
CCCTAATCTACGTTCTCAAA+TGG | - | chr1_2:50309715-50309734 | Msa0075190:CDS | 40.0% | |
TCATTTGCTCTGTCTGTTTC+GGG | - | chr1_2:50309854-50309873 | Msa0075190:CDS | 40.0% | |
CATGGAATCTTTCACTTCGA+TGG | + | chr1_2:50309931-50309950 | None:intergenic | 40.0% | |
TTGTAATTACGGAGCAGGTA+AGG | - | chr1_2:50309961-50309980 | Msa0075190:CDS | 40.0% | |
! | CTGAGATGGTATAGTACTGA+AGG | + | chr1_2:50310304-50310323 | None:intergenic | 40.0% |
CAGCGTATTCTAAACTGAGA+TGG | + | chr1_2:50310318-50310337 | None:intergenic | 40.0% | |
TGCAAAGTGCGTCATAAAAC+TGG | - | chr1_2:50310369-50310388 | Msa0075190:intron | 40.0% | |
AAGTGCGTCATAAAACTGGA+AGG | - | chr1_2:50310373-50310392 | Msa0075190:intron | 40.0% | |
GAAGGTGGTTCCAATGTTAA+AGG | - | chr1_2:50310391-50310410 | Msa0075190:CDS | 40.0% | |
GTGGTTCCAATGTTAAAGGA+TGG | - | chr1_2:50310395-50310414 | Msa0075190:CDS | 40.0% | |
TTTGGATCAGACTGGGAAAT+GGG | - | chr1_2:50310486-50310505 | Msa0075190:CDS | 40.0% | |
AGGTAAACAGCTAGAACAGA+AGG | + | chr1_2:50310785-50310804 | None:intergenic | 40.0% | |
GGAACTTGGAAGTGGAAATA+TGG | - | chr1_2:50310847-50310866 | Msa0075190:intron | 40.0% | |
GGCGTGTCTTTCAAAATCTA+AGG | - | chr1_2:50310920-50310939 | Msa0075190:intron | 40.0% | |
AGGCGTAATGTATGAAGCAA+AGG | - | chr1_2:50311156-50311175 | Msa0075190:CDS | 40.0% | |
GGCGTAATGTATGAAGCAAA+GGG | - | chr1_2:50311157-50311176 | Msa0075190:CDS | 40.0% | |
! | GATGCTTTAGACATTGATCC+TGG | - | chr1_2:50311211-50311230 | Msa0075190:CDS | 40.0% |
! | GTCAAAAAAGTTCTGACTGC+AGG | + | chr1_2:50311298-50311317 | None:intergenic | 40.0% |
!!! | CTTTTTTGACGGATGCTCTA+CGG | - | chr1_2:50311308-50311327 | Msa0075190:intron | 40.0% |
ACAGATTGAATGCTTCTGCT+TGG | - | chr1_2:50311335-50311354 | Msa0075190:intron | 40.0% | |
GCTTCTGCTTGGTATAATCT+TGG | - | chr1_2:50311346-50311365 | Msa0075190:intron | 40.0% | |
! | CGAAGCTACAGAATGTTTTC+AGG | - | chr1_2:50311408-50311427 | Msa0075190:intron | 40.0% |
TGTCATCTGAAAGGTTCAAG+TGG | + | chr1_2:50311460-50311479 | None:intergenic | 40.0% | |
!! | GTTTGGTTTGTGAGAGAGTG+GGG | + | chr1_2:50307662-50307681 | None:intergenic | 45.0% |
!! | GGTTTGGTTTGTGAGAGAGT+GGG | + | chr1_2:50307663-50307682 | None:intergenic | 45.0% |
!! | TGGTTTGGTTTGTGAGAGAG+TGG | + | chr1_2:50307664-50307683 | None:intergenic | 45.0% |
! | CTTCGGAGGGTTTTTGTTGA+AGG | - | chr1_2:50307901-50307920 | Msa0075190:three_prime_UTR | 45.0% |
CATAGGAGAAGAGGTGAATC+TGG | - | chr1_2:50308171-50308190 | Msa0075190:CDS | 45.0% | |
AGAAGAGGTGAATCTGGACA+AGG | - | chr1_2:50308177-50308196 | Msa0075190:CDS | 45.0% | |
ACAATGAAGTTCCTACGCTC+AGG | - | chr1_2:50308204-50308223 | Msa0075190:CDS | 45.0% | |
CAATGAAGTTCCTACGCTCA+GGG | - | chr1_2:50308205-50308224 | Msa0075190:CDS | 45.0% | |
AATGAAGTTCCTACGCTCAG+GGG | - | chr1_2:50308206-50308225 | Msa0075190:CDS | 45.0% | |
GTGACAAGAGATTCGGATGA+AGG | + | chr1_2:50308261-50308280 | None:intergenic | 45.0% | |
ATCCGAATCTCTTGTCACCA+GGG | - | chr1_2:50308263-50308282 | Msa0075190:CDS | 45.0% | |
ACTTCCTGAAAAGAAGTCCC+TGG | + | chr1_2:50308283-50308302 | None:intergenic | 45.0% | |
! | CTTGATCACAAGTTGGACAC+CGG | - | chr1_2:50308327-50308346 | Msa0075190:intron | 45.0% |
AAGTGGCGTGTTAAACTACG+AGG | - | chr1_2:50308383-50308402 | Msa0075190:intron | 45.0% | |
! | CAGGAAGCTAGAGCATTACT+AGG | - | chr1_2:50308823-50308842 | Msa0075190:CDS | 45.0% |
AGCTGCATTACACGTCTTTG+AGG | - | chr1_2:50308876-50308895 | Msa0075190:CDS | 45.0% | |
GCTGCATTACACGTCTTTGA+GGG | - | chr1_2:50308877-50308896 | Msa0075190:CDS | 45.0% | |
!! | GGCGTTCTTTGTTTCTGGAA+AGG | + | chr1_2:50308942-50308961 | None:intergenic | 45.0% |
AATCGTTGCAGGCTCTTGAA+AGG | - | chr1_2:50309049-50309068 | Msa0075190:CDS | 45.0% | |
AGTCTCACCAGTGCAAAACA+AGG | + | chr1_2:50309186-50309205 | None:intergenic | 45.0% | |
! | TTTGCACTGGTGAGACTGTT+TGG | - | chr1_2:50309189-50309208 | Msa0075190:CDS | 45.0% |
GTGGAATCTTCATTGCCTGA+AGG | - | chr1_2:50309470-50309489 | Msa0075190:CDS | 45.0% | |
AAGTTATCAGGCAAGCCTTC+AGG | + | chr1_2:50309488-50309507 | None:intergenic | 45.0% | |
GAAGGCTTGCCTGATAACTT+TGG | - | chr1_2:50309488-50309507 | Msa0075190:CDS | 45.0% | |
TTGAGCTGCTTCCAGAATTG+TGG | - | chr1_2:50309549-50309568 | Msa0075190:CDS | 45.0% | |
TCAGCAAGCTTCCACAATTC+TGG | + | chr1_2:50309563-50309582 | None:intergenic | 45.0% | |
GGCGAGCACTTCTTCATAAA+TGG | - | chr1_2:50309612-50309631 | Msa0075190:CDS | 45.0% | |
TGAATCTTTGCTACAGTCCC+TGG | + | chr1_2:50309647-50309666 | None:intergenic | 45.0% | |
TCCGGCAAACAACATAGAAG+AGG | - | chr1_2:50309751-50309770 | Msa0075190:CDS | 45.0% | |
! | GCCTCTTCTATGTTGTTTGC+CGG | + | chr1_2:50309755-50309774 | None:intergenic | 45.0% |
CAGACAGAGCAAATGAAAGG+TGG | + | chr1_2:50309850-50309869 | None:intergenic | 45.0% | |
GCTCTTTGTAATTACGGAGC+AGG | - | chr1_2:50309956-50309975 | Msa0075190:CDS | 45.0% | |
! | AGGTAAGGACTTGATGGCAA+TGG | - | chr1_2:50309976-50309995 | Msa0075190:CDS | 45.0% |
GTTGAGTGATAGAGAAAGGC+CGG | - | chr1_2:50310015-50310034 | Msa0075190:intron | 45.0% | |
!! | ACACGTTCCCGGTTTGTTAA+TGG | - | chr1_2:50310039-50310058 | Msa0075190:intron | 45.0% |
!! | AACCCTAGTCTTGCAGAAGA+AGG | - | chr1_2:50310082-50310101 | Msa0075190:intron | 45.0% |
!! | ACCCTAGTCTTGCAGAAGAA+GGG | - | chr1_2:50310083-50310102 | Msa0075190:intron | 45.0% |
TACTGAAGGGTCTCTCATTC+CGG | + | chr1_2:50310290-50310309 | None:intergenic | 45.0% | |
TGCGTCATAAAACTGGAAGG+TGG | - | chr1_2:50310376-50310395 | Msa0075190:CDS | 45.0% | |
AAGGATGGTTACTGTTGGCA+CGG | - | chr1_2:50310410-50310429 | Msa0075190:CDS | 45.0% | |
CTTTGGATCAGACTGGGAAA+TGG | - | chr1_2:50310485-50310504 | Msa0075190:CDS | 45.0% | |
AAGCTGAGTGTACGTCTCAA+TGG | + | chr1_2:50310575-50310594 | None:intergenic | 45.0% | |
CTCGGTTACCCTATCACAAA+TGG | + | chr1_2:50310818-50310837 | None:intergenic | 45.0% | |
TGTACATCAGTCTTTCCCAG+TGG | - | chr1_2:50310886-50310905 | Msa0075190:intron | 45.0% | |
GCTTCTAGATGTCATGCACT+CGG | - | chr1_2:50310960-50310979 | Msa0075190:intron | 45.0% | |
AGCAAAGGGCCTTTACAAAG+AGG | - | chr1_2:50311171-50311190 | Msa0075190:CDS | 45.0% | |
GTACTTCAGCAGTGGAGATT+AGG | + | chr1_2:50311249-50311268 | None:intergenic | 45.0% | |
! | TACCCTCAGCCTTGTGAAAA+AGG | + | chr1_2:50311372-50311391 | None:intergenic | 45.0% |
!! | CTCTAGAACACAACCCTTTG+AGG | + | chr1_2:50311495-50311514 | None:intergenic | 45.0% |
CTCAAAGGGTTGTGTTCTAG+AGG | - | chr1_2:50311493-50311512 | Msa0075190:intron | 45.0% | |
!!! | ATAGTTTTTTTTTTTTTTTT+TGG | + | chr1_2:50308738-50308757 | None:intergenic | 5.0% |
! | GAGGGGTTTGGAGTTTGGTT+TGG | + | chr1_2:50307689-50307708 | None:intergenic | 50.0% |
GAAGAAGAACAAGGTGCGCA+CGG | + | chr1_2:50307714-50307733 | None:intergenic | 50.0% | |
GGAGAAAGGTTCTCTTCGGA+GGG | - | chr1_2:50307888-50307907 | Msa0075190:three_prime_UTR | 50.0% | |
GAGGTGAATCTGGACAAGGA+AGG | - | chr1_2:50308181-50308200 | Msa0075190:CDS | 50.0% | |
CATCCGAATCTCTTGTCACC+AGG | - | chr1_2:50308262-50308281 | Msa0075190:CDS | 50.0% | |
GTCCCTGGTGACAAGAGATT+CGG | + | chr1_2:50308268-50308287 | None:intergenic | 50.0% | |
! | GTCACCAGGGACTTCTTTTC+AGG | - | chr1_2:50308276-50308295 | Msa0075190:CDS | 50.0% |
! | CTTGCGGCGTTCTTTGTTTC+TGG | + | chr1_2:50308947-50308966 | None:intergenic | 50.0% |
AATGGACGGCTCGTTTGTTC+CGG | - | chr1_2:50309733-50309752 | Msa0075190:CDS | 50.0% | |
CACTTCGATGGATAGTCCCA+GGG | + | chr1_2:50309919-50309938 | None:intergenic | 50.0% | |
TCACTTCGATGGATAGTCCC+AGG | + | chr1_2:50309920-50309939 | None:intergenic | 50.0% | |
AACAAACCGGGAACGTGTTC+CGG | + | chr1_2:50310037-50310056 | None:intergenic | 50.0% | |
CCCCTTCTTCTGCAAGACTA+GGG | + | chr1_2:50310087-50310106 | None:intergenic | 50.0% | |
!! | CCCTAGTCTTGCAGAAGAAG+GGG | - | chr1_2:50310084-50310103 | Msa0075190:intron | 50.0% |
ACCCCTTCTTCTGCAAGACT+AGG | + | chr1_2:50310088-50310107 | None:intergenic | 50.0% | |
!! | TCAGAGAGCACTTGAGAGCT+TGG | - | chr1_2:50310117-50310136 | Msa0075190:intron | 50.0% |
! | AGAGCACTTGAGAGCTTGGA+CGG | - | chr1_2:50310121-50310140 | Msa0075190:intron | 50.0% |
! | ATCTGAGGCACTTCAAGCCT+TGG | - | chr1_2:50310246-50310265 | Msa0075190:intron | 50.0% |
CTTCAAGCCTTGGAAACTGC+TGG | - | chr1_2:50310256-50310275 | Msa0075190:intron | 50.0% | |
! | AACGCTGCTTTGGATCAGAC+TGG | - | chr1_2:50310478-50310497 | Msa0075190:CDS | 50.0% |
! | ACGCTGCTTTGGATCAGACT+GGG | - | chr1_2:50310479-50310498 | Msa0075190:CDS | 50.0% |
TCAGACTGGGAAATGGGATC+AGG | - | chr1_2:50310492-50310511 | Msa0075190:CDS | 50.0% | |
CAGACTGGGAAATGGGATCA+GGG | - | chr1_2:50310493-50310512 | Msa0075190:CDS | 50.0% | |
CCAAGTTCCTAGCACGATCT+CGG | + | chr1_2:50310836-50310855 | None:intergenic | 50.0% | |
TCGTGCTAGGAACTTGGAAG+TGG | - | chr1_2:50310839-50310858 | Msa0075190:intron | 50.0% | |
GCGTCTAAGTACTTCAGCAG+TGG | + | chr1_2:50311257-50311276 | None:intergenic | 50.0% | |
!! | TGGCCTTTTTCACAAGGCTG+AGG | - | chr1_2:50311366-50311385 | Msa0075190:intron | 50.0% |
!! | GGCCTTTTTCACAAGGCTGA+GGG | - | chr1_2:50311367-50311386 | Msa0075190:intron | 50.0% |
! | CGGATGAGGGGTTTGGAGTT+TGG | + | chr1_2:50307694-50307713 | None:intergenic | 55.0% |
AACAAGGTGCGCACGGATGA+GGG | + | chr1_2:50307707-50307726 | None:intergenic | 55.0% | |
GGGAGAAAGGTTCTCTTCGG+AGG | - | chr1_2:50307887-50307906 | Msa0075190:three_prime_UTR | 55.0% | |
CTACGCTCAGGGGAGCAATT+GGG | - | chr1_2:50308216-50308235 | Msa0075190:CDS | 55.0% | |
ATTGCAGGAGACCGTGAGCA+AGG | - | chr1_2:50309523-50309542 | Msa0075190:CDS | 55.0% | |
CAGCTCAACTGCCTTGCTCA+CGG | + | chr1_2:50309537-50309556 | None:intergenic | 55.0% | |
CGGAGCAGGTAAGGACTTGA+TGG | - | chr1_2:50309970-50309989 | Msa0075190:CDS | 55.0% | |
CGTTCTGCCAGCAGTTTCCA+AGG | + | chr1_2:50310266-50310285 | None:intergenic | 55.0% | |
GAAACTGCTGGCAGAACGAC+CGG | - | chr1_2:50310268-50310287 | Msa0075190:intron | 55.0% | |
AGGGTAACCGAGATCGTGCT+AGG | - | chr1_2:50310826-50310845 | Msa0075190:intron | 55.0% | |
CCGAGATCGTGCTAGGAACT+TGG | - | chr1_2:50310833-50310852 | Msa0075190:intron | 55.0% | |
TTCCCAGTGGCATGATGCAG+AGG | - | chr1_2:50310899-50310918 | Msa0075190:intron | 55.0% | |
TGGAGATTAGGCTGCGGACA+TGG | + | chr1_2:50311237-50311256 | None:intergenic | 55.0% | |
CAGCAGTGGAGATTAGGCTG+CGG | + | chr1_2:50311243-50311262 | None:intergenic | 55.0% | |
TGTGAGAGAGTGGGGTCCAG+TGG | + | chr1_2:50307654-50307673 | None:intergenic | 60.0% | |
ACAAGGTGCGCACGGATGAG+GGG | + | chr1_2:50307706-50307725 | None:intergenic | 60.0% | |
GAACAAGGTGCGCACGGATG+AGG | + | chr1_2:50307708-50307727 | None:intergenic | 60.0% | |
CCAATTGCTCCCCTGAGCGT+AGG | + | chr1_2:50308218-50308237 | None:intergenic | 60.0% | |
CCTACGCTCAGGGGAGCAAT+TGG | - | chr1_2:50308215-50308234 | Msa0075190:CDS | 60.0% | |
GAAAGGCCGGAACACGTTCC+CGG | - | chr1_2:50310028-50310047 | Msa0075190:intron | 60.0% | |
CGCCTCTGCATCATGCCACT+GGG | + | chr1_2:50310904-50310923 | None:intergenic | 60.0% | |
ACGCCTCTGCATCATGCCAC+TGG | + | chr1_2:50310905-50310924 | None:intergenic | 60.0% | |
ATTAGGCTGCGGACATGGCC+AGG | + | chr1_2:50311232-50311251 | None:intergenic | 60.0% | |
GTGCGCACGGATGAGGGGTT+TGG | + | chr1_2:50307701-50307720 | None:intergenic | 65.0% | |
CGCTCAGGGGAGCAATTGGG+AGG | - | chr1_2:50308219-50308238 | Msa0075190:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 50307650 | 50311803 | 50307650 | ID=Msa0075190;Name=Msa0075190 |
chr1_2 | mRNA | 50307650 | 50311803 | 50307650 | ID=Msa0075190-mRNA-1;Parent=Msa0075190;Name=Msa0075190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=324|1|1|1|0.8|0.66|6|326|713 |
chr1_2 | exon | 50307650 | 50308295 | 50307650 | ID=Msa0075190-mRNA-1:exon:15501;Parent=Msa0075190-mRNA-1 |
chr1_2 | exon | 50308472 | 50308625 | 50308472 | ID=Msa0075190-mRNA-1:exon:15500;Parent=Msa0075190-mRNA-1 |
chr1_2 | exon | 50308802 | 50310018 | 50308802 | ID=Msa0075190-mRNA-1:exon:15499;Parent=Msa0075190-mRNA-1 |
chr1_2 | exon | 50310375 | 50310627 | 50310375 | ID=Msa0075190-mRNA-1:exon:15498;Parent=Msa0075190-mRNA-1 |
chr1_2 | exon | 50311049 | 50311296 | 50311049 | ID=Msa0075190-mRNA-1:exon:15497;Parent=Msa0075190-mRNA-1 |
chr1_2 | exon | 50311530 | 50311803 | 50311530 | ID=Msa0075190-mRNA-1:exon:15496;Parent=Msa0075190-mRNA-1 |
chr1_2 | five_prime_UTR | 50311530 | 50311803 | 50311530 | ID=Msa0075190-mRNA-1:five_prime_utr;Parent=Msa0075190-mRNA-1 |
chr1_2 | five_prime_UTR | 50311247 | 50311296 | 50311247 | ID=Msa0075190-mRNA-1:five_prime_utr;Parent=Msa0075190-mRNA-1 |
chr1_2 | CDS | 50311049 | 50311246 | 50311049 | ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1 |
chr1_2 | CDS | 50310375 | 50310627 | 50310375 | ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1 |
chr1_2 | CDS | 50308802 | 50310018 | 50308802 | ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1 |
chr1_2 | CDS | 50308472 | 50308625 | 50308472 | ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1 |
chr1_2 | CDS | 50307976 | 50308295 | 50307976 | ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1 |
chr1_2 | three_prime_UTR | 50307650 | 50307975 | 50307650 | ID=Msa0075190-mRNA-1:three_prime_utr;Parent=Msa0075190-mRNA-1 |
Gene Sequence |
Protein sequence |