AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075190 MtrunA17_Chr1g0183461 96.634 713 24 0 1 713 1 713 0.0 1425
Msa0075190 MtrunA17_Chr7g0261581 68.436 716 220 3 1 713 16 728 0.0 980
Msa0075190 MtrunA17_Chr1g0187271 57.719 719 290 7 1 713 22 732 0.0 786
Msa0075190 MtrunA17_Chr1g0152501 44.028 720 381 12 6 712 6 716 0.0 537
Msa0075190 MtrunA17_Chr5g0409291 49.554 561 279 3 40 600 26 582 1.04e-174 513
Msa0075190 MtrunA17_Chr8g0369551 46.207 580 308 3 29 608 10 585 3.14e-168 496
Msa0075190 MtrunA17_Chr8g0369541 40.000 105 60 1 608 712 20 121 7.74e-20 85.9
Msa0075190 MtrunA17_Chr5g0409281 40.952 105 58 2 609 712 9 110 2.01e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075190 AT4G28600.1 58.693 719 287 3 1 713 25 739 0.0 799
Msa0075190 AT4G28600.2 58.693 719 287 3 1 713 25 739 0.0 799
Msa0075190 AT4G28600.3 58.287 724 287 4 1 713 25 744 0.0 793
Msa0075190 AT2G43040.2 47.633 676 344 5 40 712 32 700 0.0 569
Msa0075190 AT2G43040.1 47.633 676 344 5 40 712 32 700 0.0 569
Msa0075190 AT1G27460.3 41.399 715 380 10 6 712 6 689 1.15e-164 490
Msa0075190 AT1G27460.1 41.818 715 381 10 6 712 6 693 1.31e-164 490
Msa0075190 AT1G27460.2 42.545 550 292 8 6 547 6 539 1.15e-126 387

Find 200 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCGGCGTTCTTTGTTTC+TGG 0.051091 1_2:+50310487 None:intergenic
TGACAAATATGATTTGTATT+TGG 0.180768 1_2:-50307717 Msa0075190:three_prime_UTR
TTTCCGGTTCACCATGATTA+TGG 0.184771 1_2:+50310456 None:intergenic
TTCATTTGCTCTGTCTGTTT+CGG 0.188123 1_2:-50309578 Msa0075190:CDS
TCATTTGCTCTGTCTGTTTC+GGG 0.193859 1_2:-50309577 Msa0075190:CDS
ATCGAGTTTAGCCAATTATT+TGG 0.205375 1_2:-50309548 Msa0075190:CDS
TACCCTCAGCCTTGTGAAAA+AGG 0.205859 1_2:+50308062 None:intergenic
CAGGCTCTTGAAAGGTTTAA+AGG 0.236026 1_2:-50310374 Msa0075190:intron
CTATTATAGAAAAGTAATTA+AGG 0.239293 1_2:-50311565 Msa0075190:five_prime_UTR
ATCATCTGCACACTCAAAAT+TGG 0.251662 1_2:-50309239 Msa0075190:CDS
CCAATCTTGCAAAGTTATTA+TGG 0.251753 1_2:-50309989 Msa0075190:CDS
CATTCAGCACCAAAGTTATC+AGG 0.259185 1_2:+50309934 None:intergenic
ACACGTTCCCGGTTTGTTAA+TGG 0.260326 1_2:-50309392 Msa0075190:CDS
GGCGAGCACTTCTTCATAAA+TGG 0.260430 1_2:-50309819 Msa0075190:CDS
TTTGTCAATTTGTATTTCTT+TGG 0.265129 1_2:+50307733 None:intergenic
GAGTAATTCTTCCAAATAAT+TGG 0.272977 1_2:+50309537 None:intergenic
CCATAATAACTTTGCAAGAT+TGG 0.280709 1_2:+50309989 None:intergenic
CGGATGAGGGGTTTGGAGTT+TGG 0.285069 1_2:+50311740 None:intergenic
CCATTTGAGAACGTAGATTA+GGG 0.289798 1_2:+50309716 None:intergenic
TTCTGCTTCTTCTATATTAC+CGG 0.290062 1_2:+50311085 None:intergenic
TCAGCAAGCTTCCACAATTC+TGG 0.299846 1_2:+50309871 None:intergenic
GCCTCTTCTATGTTGTTTGC+CGG 0.304221 1_2:+50309679 None:intergenic
CAAATTCAGAGCAAAAGTTT+TGG 0.314010 1_2:-50308824 Msa0075190:CDS
TGCAAAGTGCGTCATAAAAC+TGG 0.329264 1_2:-50309062 Msa0075190:CDS
AACAAACCGGGAACGTGTTC+CGG 0.330656 1_2:+50309397 None:intergenic
TTCCGGTTCACCATGATTAT+GGG 0.345463 1_2:+50310457 None:intergenic
AAGAAAGCTATAAATAAATA+AGG 0.346516 1_2:-50307807 Msa0075190:three_prime_UTR
CTCTAGAACACAACCCTTTG+AGG 0.353424 1_2:+50307939 None:intergenic
TTCTTGGAAGAAGCTATATA+AGG 0.353884 1_2:-50308801 Msa0075190:intron
GATCTAGCTCTTTGTAATTA+CGG 0.355641 1_2:-50309481 Msa0075190:CDS
GAAAGGCCGGAACACGTTCC+CGG 0.359395 1_2:-50309403 Msa0075190:CDS
TCTAAAAGCAAAATCGTTGC+AGG 0.362819 1_2:-50310393 Msa0075190:CDS
GGAAGATACGAGTATCAAAA+AGG 0.369028 1_2:-50310587 Msa0075190:CDS
GAGGGGTTTGGAGTTTGGTT+TGG 0.369356 1_2:+50311745 None:intergenic
TACTGAAGGGTCTCTCATTC+CGG 0.371242 1_2:+50309144 None:intergenic
AATGGACGGCTCGTTTGTTC+CGG 0.372709 1_2:-50309698 Msa0075190:CDS
CATAATAACTTTGCAAGATT+GGG 0.372836 1_2:+50309990 None:intergenic
GTTTGGAGTTTGGTTTGGTT+TGG 0.374752 1_2:+50311750 None:intergenic
GGAACTTGGAAGTGGAAATA+TGG 0.379485 1_2:-50308584 Msa0075190:CDS
CATAGGAGAAGAGGTGAATC+TGG 0.381742 1_2:-50311260 Msa0075190:five_prime_UTR
TGAATCTTTGCTACAGTCCC+TGG 0.383146 1_2:+50309787 None:intergenic
GTGCGCACGGATGAGGGGTT+TGG 0.383192 1_2:+50311733 None:intergenic
GAAGGTGGTTCCAATGTTAA+AGG 0.388143 1_2:-50309040 Msa0075190:CDS
GTGAAGCTACTTTGTCTTAC+CGG 0.388356 1_2:-50309840 Msa0075190:CDS
AATGTTGCAAAATTCTATCT+TGG 0.388770 1_2:-50309268 Msa0075190:CDS
CTTTGGATCAGACTGGGAAA+TGG 0.392510 1_2:-50308946 Msa0075190:CDS
TCAGAGAGCACTTGAGAGCT+TGG 0.397172 1_2:-50309314 Msa0075190:CDS
GCGTTCTTTGTTTCTGGAAA+GGG 0.399083 1_2:+50310493 None:intergenic
ATCTATTATCAACGCTGCTT+TGG 0.399909 1_2:-50308963 Msa0075190:CDS
TCAGACTGGGAAATGGGATC+AGG 0.402096 1_2:-50308939 Msa0075190:CDS
GCTTCTGCTTGGTATAATCT+TGG 0.405820 1_2:-50308085 Msa0075190:CDS
TGGTTTGGTTTGTGAGAGAG+TGG 0.407754 1_2:+50311770 None:intergenic
CCTACGCTCAGGGGAGCAAT+TGG 0.409024 1_2:-50311216 Msa0075190:CDS
AAGTTATCAGGCAAGCCTTC+AGG 0.409413 1_2:+50309946 None:intergenic
ACAGAATGTATAGACATTTC+CGG 0.415399 1_2:+50310440 None:intergenic
TCCATTTGAGAACGTAGATT+AGG 0.418331 1_2:+50309715 None:intergenic
CCGAGATCGTGCTAGGAACT+TGG 0.420476 1_2:-50308598 Msa0075190:CDS
TTTAGAAGCCATTAACAAAC+CGG 0.423076 1_2:+50309384 None:intergenic
TATTATAGAAAAGTAATTAA+GGG 0.428070 1_2:-50311564 Msa0075190:five_prime_UTR
GAGTTTGGTTTGGTTTGGTT+TGG 0.428467 1_2:+50311755 None:intergenic
TGGTGCTGAATGTAAATTGC+AGG 0.428911 1_2:-50309923 Msa0075190:CDS
ATCTGAGGCACTTCAAGCCT+TGG 0.438993 1_2:-50309185 Msa0075190:CDS
TCTCTCTCAATAGAATTGAA+TGG 0.439125 1_2:-50309624 Msa0075190:CDS
GAATTTCTCGAAATCAGAAA+TGG 0.439970 1_2:+50309216 None:intergenic
GTACTTCAGCAGTGGAGATT+AGG 0.444856 1_2:+50308185 None:intergenic
CATGGAATCTTTCACTTCGA+TGG 0.444879 1_2:+50309503 None:intergenic
ACCCCTTCTTCTGCAAGACT+AGG 0.448007 1_2:+50309346 None:intergenic
GAAAAGTAATTAAGGGAGAA+AGG 0.449801 1_2:-50311557 Msa0075190:five_prime_UTR
TTCCCATAATCATGGTGAAC+CGG 0.454699 1_2:-50310459 Msa0075190:CDS
TTTGGATCAGACTGGGAAAT+GGG 0.455022 1_2:-50308945 Msa0075190:CDS
CTCTCTCAATAGAATTGAAT+GGG 0.455430 1_2:-50309623 Msa0075190:CDS
GGCGTTCTTTGTTTCTGGAA+AGG 0.457269 1_2:+50310492 None:intergenic
GGCGTGTCTTTCAAAATCTA+AGG 0.457296 1_2:-50308511 Msa0075190:CDS
GTAAGTAAAGTGGAAGATCT+AGG 0.459735 1_2:+50311691 None:intergenic
CCCCTTCTTCTGCAAGACTA+GGG 0.461370 1_2:+50309347 None:intergenic
CGGAGCAGGTAAGGACTTGA+TGG 0.465727 1_2:-50309461 Msa0075190:CDS
CCCTAATCTACGTTCTCAAA+TGG 0.465907 1_2:-50309716 Msa0075190:CDS
ATTAGGCTGCGGACATGGCC+AGG 0.467685 1_2:+50308202 None:intergenic
CAAAGTTATTATGGACATAG+TGG 0.467812 1_2:-50309980 Msa0075190:CDS
ACGCCTCTGCATCATGCCAC+TGG 0.468078 1_2:+50308529 None:intergenic
GAAGGCTTGCCTGATAACTT+TGG 0.468639 1_2:-50309943 Msa0075190:CDS
GGTTTGGTTTGTGAGAGAGT+GGG 0.470978 1_2:+50311771 None:intergenic
CATAAATGGAATCTCGATCC+AGG 0.473610 1_2:-50309805 Msa0075190:CDS
CATCCGAATCTCTTGTCACC+AGG 0.475993 1_2:-50311169 Msa0075190:CDS
CTACGCTCAGGGGAGCAATT+GGG 0.477613 1_2:-50311215 Msa0075190:CDS
TAAAGAGAAAATGAAGAGAA+TGG 0.477756 1_2:+50311641 None:intergenic
GTCCCTGGTGACAAGAGATT+CGG 0.477939 1_2:+50311166 None:intergenic
ACAATGAAGTTCCTACGCTC+AGG 0.478204 1_2:-50311227 Msa0075190:CDS
CAGTAACCATCCTTTAACAT+TGG 0.480051 1_2:+50309030 None:intergenic
GTCTTTGAGGGAATAGATAT+AGG 0.481239 1_2:-50310542 Msa0075190:CDS
TAAGGGAGAAAGGTTCTCTT+CGG 0.481339 1_2:-50311547 Msa0075190:five_prime_UTR
GAACAAGGTGCGCACGGATG+AGG 0.482666 1_2:+50311726 None:intergenic
AACCCTAGTCTTGCAGAAGA+AGG 0.483388 1_2:-50309349 Msa0075190:CDS
CAGGAAGCTAGAGCATTACT+AGG 0.486649 1_2:-50310608 Msa0075190:CDS
CGTTCTGCCAGCAGTTTCCA+AGG 0.488431 1_2:+50309168 None:intergenic
TGAGGGTAAAATATCATCAT+TGG 0.491744 1_2:-50308047 Msa0075190:CDS
GATGGAAATTGTAAGTAAAG+TGG 0.492204 1_2:+50311681 None:intergenic
TATTTGGAAGAATTACTCCC+TGG 0.494270 1_2:-50309532 Msa0075190:CDS
GTGACAAGAGATTCGGATGA+AGG 0.497025 1_2:+50311173 None:intergenic
GAAACTGCTGGCAGAACGAC+CGG 0.498236 1_2:-50309163 Msa0075190:CDS
GCTCTTTGTAATTACGGAGC+AGG 0.499405 1_2:-50309475 Msa0075190:CDS
GATGCTTTAGACATTGATCC+TGG 0.500078 1_2:-50308220 Msa0075190:CDS
TTGTAATTACGGAGCAGGTA+AGG 0.501729 1_2:-50309470 Msa0075190:CDS
TCACTTCGATGGATAGTCCC+AGG 0.503053 1_2:+50309514 None:intergenic
AGCTGCATTACACGTCTTTG+AGG 0.505490 1_2:-50310555 Msa0075190:CDS
ATATTCTATAAAACCTCAAA+GGG 0.508646 1_2:-50307952 Msa0075190:three_prime_UTR
AATCGTTGCAGGCTCTTGAA+AGG 0.510742 1_2:-50310382 Msa0075190:CDS
TTGAGCTGCTTCCAGAATTG+TGG 0.513561 1_2:-50309882 Msa0075190:CDS
CGCCTCTGCATCATGCCACT+GGG 0.513605 1_2:+50308530 None:intergenic
AACGCTGCTTTGGATCAGAC+TGG 0.514212 1_2:-50308953 Msa0075190:CDS
AATTACAAAGAGCTAGATCA+TGG 0.514312 1_2:+50309485 None:intergenic
GCTGCATTACACGTCTTTGA+GGG 0.518869 1_2:-50310554 Msa0075190:CDS
CTGAGATGGTATAGTACTGA+AGG 0.523029 1_2:+50309130 None:intergenic
CATATTCTATAAAACCTCAA+AGG 0.523781 1_2:-50307953 Msa0075190:three_prime_UTR
AACAAGGTGCGCACGGATGA+GGG 0.524738 1_2:+50311727 None:intergenic
ATTTGGAAGAATTACTCCCT+GGG 0.525471 1_2:-50309531 Msa0075190:CDS
GAATTATCTCTGCGAGAAAG+TGG 0.528266 1_2:-50311065 Msa0075190:CDS
TGGAGATTAGGCTGCGGACA+TGG 0.529432 1_2:+50308197 None:intergenic
AAGAAACATTCCCATAATCA+TGG 0.530663 1_2:-50310467 Msa0075190:CDS
AAGCTGAGTGTACGTCTCAA+TGG 0.530685 1_2:+50308859 None:intergenic
CTTCAAGCCTTGGAAACTGC+TGG 0.530954 1_2:-50309175 Msa0075190:CDS
ACCCTAGTCTTGCAGAAGAA+GGG 0.531321 1_2:-50309348 Msa0075190:CDS
CCAAGTTCCTAGCACGATCT+CGG 0.533706 1_2:+50308598 None:intergenic
GAAAGGTGGTCTAAAATTGA+AGG 0.534995 1_2:+50309598 None:intergenic
ACCTTGCTGTCATCATGCAG+TGG 0.536851 1_2:+50307639 None:intergenic
GGAAATGTCTATACATTCTG+TGG 0.537831 1_2:-50310438 Msa0075190:CDS
AATTGTTGAGTGATAGAGAA+AGG 0.538244 1_2:-50309420 Msa0075190:CDS
AGGCGTAATGTATGAAGCAA+AGG 0.544212 1_2:-50308275 Msa0075190:CDS
AGAGCACTTGAGAGCTTGGA+CGG 0.546004 1_2:-50309310 Msa0075190:CDS
TCGTGCTAGGAACTTGGAAG+TGG 0.547148 1_2:-50308592 Msa0075190:CDS
CCTTGCTGTCATCATGCAGT+GGG 0.548501 1_2:+50307640 None:intergenic
AGTGATCATTCTTTCCTACC+TGG 0.549462 1_2:-50311131 Msa0075190:CDS
GGCGTAATGTATGAAGCAAA+GGG 0.550921 1_2:-50308274 Msa0075190:CDS
AATAATTGGCTAAACTCGAT+AGG 0.551034 1_2:+50309551 None:intergenic
TATAGAATATGTCATCTGAA+AGG 0.552996 1_2:+50307965 None:intergenic
CAATGAAGTTCCTACGCTCA+GGG 0.553279 1_2:-50311226 Msa0075190:CDS
GCTAAAGTTCAAATTGCACT+TGG 0.553493 1_2:-50308896 Msa0075190:CDS
CTCAAAGGGTTGTGTTCTAG+AGG 0.557066 1_2:-50307938 Msa0075190:three_prime_UTR
GGGAGAAAGGTTCTCTTCGG+AGG 0.557701 1_2:-50311544 Msa0075190:five_prime_UTR
TGACATCTAGAAGCAGAATA+CGG 0.557828 1_2:+50308480 None:intergenic
ACAGATTGAATGCTTCTGCT+TGG 0.559962 1_2:-50308096 Msa0075190:CDS
CAGACTGGGAAATGGGATCA+GGG 0.561941 1_2:-50308938 Msa0075190:CDS
GTTGAGTGATAGAGAAAGGC+CGG 0.563279 1_2:-50309416 Msa0075190:CDS
CCCTAGTCTTGCAGAAGAAG+GGG 0.568534 1_2:-50309347 Msa0075190:CDS
GTGGTTCCAATGTTAAAGGA+TGG 0.575049 1_2:-50309036 Msa0075190:CDS
GGAGAAAGGTTCTCTTCGGA+GGG 0.575124 1_2:-50311543 Msa0075190:five_prime_UTR
TTCCCAGTGGCATGATGCAG+AGG 0.575200 1_2:-50308532 Msa0075190:CDS
CACTTCGATGGATAGTCCCA+GGG 0.576038 1_2:+50309515 None:intergenic
GAATGAGAAATGAAATGAGA+TGG 0.576105 1_2:+50311663 None:intergenic
AAAGTATGACATAGGAGAAG+AGG 0.577520 1_2:-50311269 Msa0075190:five_prime_UTR
TGGAAAACTTGATCACAAGT+TGG 0.577745 1_2:-50311111 Msa0075190:CDS
AGGGTAACCGAGATCGTGCT+AGG 0.578066 1_2:-50308605 Msa0075190:CDS
ACTTCCTGAAAAGAAGTCCC+TGG 0.578708 1_2:+50311151 None:intergenic
CAGCGTATTCTAAACTGAGA+TGG 0.582160 1_2:+50309116 None:intergenic
GAAGAAGAACAAGGTGCGCA+CGG 0.590592 1_2:+50311720 None:intergenic
TGTGAGAGAGTGGGGTCCAG+TGG 0.591367 1_2:+50311780 None:intergenic
GTTTGGTTTGTGAGAGAGTG+GGG 0.592439 1_2:+50311772 None:intergenic
AAGGATGGTTACTGTTGGCA+CGG 0.592491 1_2:-50309021 Msa0075190:CDS
TAAATACTAAAATCATCCAC+TGG 0.593564 1_2:-50311796 None:intergenic
TAGTGCTGAAAGTATGACAT+AGG 0.595411 1_2:-50311277 Msa0075190:five_prime_UTR
CAGCTCAACTGCCTTGCTCA+CGG 0.599337 1_2:+50309897 None:intergenic
GATTATGGGAATGTTTCTTG+CGG 0.600308 1_2:+50310471 None:intergenic
GTGGAATCTTCATTGCCTGA+AGG 0.600900 1_2:-50309961 Msa0075190:CDS
TTAGAAGCCATTAACAAACC+GGG 0.606436 1_2:+50309385 None:intergenic
ATAAATGGAATCTCGATCCA+GGG 0.607813 1_2:-50309804 Msa0075190:CDS
ATTGCAGGAGACCGTGAGCA+AGG 0.607861 1_2:-50309908 Msa0075190:CDS
ATTTATGAAGAAGTGCTCGC+CGG 0.609816 1_2:+50309821 None:intergenic
TGTCATCTGAAAGGTTCAAG+TGG 0.610618 1_2:+50307974 None:intergenic
ACGCTGCTTTGGATCAGACT+GGG 0.611127 1_2:-50308952 Msa0075190:CDS
TGAGATGGTATAGTACTGAA+GGG 0.615082 1_2:+50309131 None:intergenic
CCAATTGCTCCCCTGAGCGT+AGG 0.615359 1_2:+50311216 None:intergenic
CGCTCAGGGGAGCAATTGGG+AGG 0.616293 1_2:-50311212 Msa0075190:CDS
AGGTAAGGACTTGATGGCAA+TGG 0.618555 1_2:-50309455 Msa0075190:CDS
GCGTCTAAGTACTTCAGCAG+TGG 0.622569 1_2:+50308177 None:intergenic
AGCAAAGGGCCTTTACAAAG+AGG 0.624063 1_2:-50308260 Msa0075190:CDS
ACAAGGTGCGCACGGATGAG+GGG 0.624418 1_2:+50311728 None:intergenic
AAGTGCGTCATAAAACTGGA+AGG 0.625420 1_2:-50309058 Msa0075190:CDS
AAACAGACAGAGCAAATGAA+AGG 0.626924 1_2:+50309581 None:intergenic
GTTTAGAATACGCTGAACAA+AGG 0.629222 1_2:-50309108 Msa0075190:CDS
GAAATGTCTATACATTCTGT+GGG 0.629408 1_2:-50310437 Msa0075190:CDS
TGTTAAAGGATGGTTACTGT+TGG 0.631562 1_2:-50309026 Msa0075190:CDS
ATCCGAATCTCTTGTCACCA+GGG 0.633299 1_2:-50311168 Msa0075190:CDS
ATTTGAGAACGTAGATTAGG+GGG 0.633365 1_2:+50309718 None:intergenic
AATCTACGTTCTCAAATGGA+CGG 0.634441 1_2:-50309712 Msa0075190:CDS
AAAGCTATAAATAAATAAGG+TGG 0.639238 1_2:-50307804 Msa0075190:three_prime_UTR
GCTTCTAGATGTCATGCACT+CGG 0.643649 1_2:-50308471 Msa0075190:intron
CTTGATCACAAGTTGGACAC+CGG 0.647590 1_2:-50311104 Msa0075190:CDS
TCCGGCAAACAACATAGAAG+AGG 0.651451 1_2:-50309680 Msa0075190:CDS
AGAAGAGGTGAATCTGGACA+AGG 0.654473 1_2:-50311254 Msa0075190:five_prime_UTR
CATTTGAGAACGTAGATTAG+GGG 0.654581 1_2:+50309717 None:intergenic
CAGCAGTGGAGATTAGGCTG+CGG 0.655573 1_2:+50308191 None:intergenic
GAAATTCAAGAGACAATCTG+AGG 0.658610 1_2:-50309200 Msa0075190:CDS
AGGAAAGAAGAAGAAGAACA+AGG 0.663454 1_2:+50311711 None:intergenic
CAGACAGAGCAAATGAAAGG+TGG 0.667903 1_2:+50309584 None:intergenic
GAGGTGAATCTGGACAAGGA+AGG 0.672537 1_2:-50311250 Msa0075190:five_prime_UTR
TGCGTCATAAAACTGGAAGG+TGG 0.682113 1_2:-50309055 Msa0075190:CDS
AATGAAGTTCCTACGCTCAG+GGG 0.692085 1_2:-50311225 Msa0075190:CDS
TGTACATCAGTCTTTCCCAG+TGG 0.736555 1_2:-50308545 Msa0075190:CDS
TAAGACAAAGTAGCTTCACG+AGG 0.755950 1_2:+50309844 None:intergenic
AAGTGGCGTGTTAAACTACG+AGG 0.762852 1_2:-50311048 Msa0075190:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATAGAAAAGTAATTAA+GGG - chr1_2:50307867-50307886 Msa0075190:three_prime_UTR 10.0%
!!! ATTAATAATAGTTTAGTTTA+GGG - chr1_2:50308075-50308094 Msa0075190:CDS 10.0%
!! CTATTATAGAAAAGTAATTA+AGG - chr1_2:50307866-50307885 Msa0075190:three_prime_UTR 15.0%
!!! GATTAATAATAGTTTAGTTT+AGG - chr1_2:50308074-50308093 Msa0075190:CDS 15.0%
!!! TTTTTCTTTTCAAATTTAAC+AGG - chr1_2:50311136-50311155 Msa0075190:CDS 15.0%
!! AAGAAAGCTATAAATAAATA+AGG - chr1_2:50311624-50311643 Msa0075190:five_prime_UTR 15.0%
!!! TTTTCTATAATAGCTTCAAT+AGG + chr1_2:50307859-50307878 None:intergenic 20.0%
!! TAAAACCAAGTTAATAAAAC+AGG + chr1_2:50307998-50308017 None:intergenic 20.0%
!! CATAATATATGAGCAAATTA+AGG + chr1_2:50308126-50308145 None:intergenic 20.0%
!!! TAAAAAAGTGAAGTATTTTG+AGG + chr1_2:50308416-50308435 None:intergenic 20.0%
!!! TTTTTTTTTTGGTACATAGA+CGG + chr1_2:50308727-50308746 None:intergenic 20.0%
!!! TTTGTTTTCATAAACTATCT+TGG + chr1_2:50309280-50309299 None:intergenic 20.0%
!! GTGACTATAACTATTAAAAT+TGG - chr1_2:50310714-50310733 Msa0075190:intron 20.0%
!! ATATTCTATAAAACCTCAAA+GGG - chr1_2:50311479-50311498 Msa0075190:intron 20.0%
!! AAAGCTATAAATAAATAAGG+TGG - chr1_2:50311627-50311646 Msa0075190:five_prime_UTR 20.0%
!!! AAATATTTTGACAAGTTCTA+TGG + chr1_2:50311655-50311674 None:intergenic 20.0%
!! TTTGTCAATTTGTATTTCTT+TGG + chr1_2:50311701-50311720 None:intergenic 20.0%
!!! TGACAAATATGATTTGTATT+TGG - chr1_2:50311714-50311733 Msa0075190:five_prime_UTR 20.0%
! TAAAGAGAAAATGAAGAGAA+TGG + chr1_2:50307793-50307812 None:intergenic 25.0%
!!! TTGTTCCTGTTTTATTAACT+TGG - chr1_2:50307990-50308009 Msa0075190:CDS 25.0%
! TTATTCATGAACTATCTTGA+TGG - chr1_2:50308052-50308071 Msa0075190:CDS 25.0%
!!! CACTTTTTTAAGTTATCATG+TGG - chr1_2:50308426-50308445 Msa0075190:intron 25.0%
!! TAAGTTATCATGTGGATTTT+TGG - chr1_2:50308434-50308453 Msa0075190:intron 25.0%
! TTGTAGCTACTATTCTAATT+TGG - chr1_2:50308777-50308796 Msa0075190:intron 25.0%
! AAACTATCTTGGATATCTAA+TGG + chr1_2:50309269-50309288 None:intergenic 25.0%
! CATAATAACTTTGCAAGATT+GGG + chr1_2:50309444-50309463 None:intergenic 25.0%
!!! GTTGTTTTTCTTCTATATAG+TGG - chr1_2:50309677-50309696 Msa0075190:CDS 25.0%
!!! TTTTTCTTCTATATAGTGGA+GGG - chr1_2:50309681-50309700 Msa0075190:CDS 25.0%
! GAGTAATTCTTCCAAATAAT+TGG + chr1_2:50309897-50309916 None:intergenic 25.0%
! AATGTTGCAAAATTCTATCT+TGG - chr1_2:50310163-50310182 Msa0075190:intron 25.0%
! AAATATTCAATCAGTACAAG+TGG + chr1_2:50310669-50310688 None:intergenic 25.0%
! AAATTGGATAAATGTTTCAC+TGG - chr1_2:50310730-50310749 Msa0075190:intron 25.0%
! TCACAAATGGTATAGATAAA+AGG + chr1_2:50310805-50310824 None:intergenic 25.0%
! TTATCTATACCATTTGTGAT+AGG - chr1_2:50310806-50310825 Msa0075190:intron 25.0%
! TATCTATACCATTTGTGATA+GGG - chr1_2:50310807-50310826 Msa0075190:intron 25.0%
! CATCTCAAGAAAAAGTTAAA+TGG + chr1_2:50311051-50311070 None:intergenic 25.0%
!!! CATTTAACTTTTTCTTGAGA+TGG - chr1_2:50311049-50311068 Msa0075190:CDS 25.0%
! TTCAAGTGATAATAATCTGT+TGG + chr1_2:50311083-50311102 None:intergenic 25.0%
! TATAGAATATGTCATCTGAA+AGG + chr1_2:50311469-50311488 None:intergenic 25.0%
! CATATTCTATAAAACCTCAA+AGG - chr1_2:50311478-50311497 Msa0075190:intron 25.0%
!!! CCTAAATCACGTTATTTTTA+TGG + chr1_2:50311770-50311789 None:intergenic 25.0%
! CCATAAAAATAACGTGATTT+AGG - chr1_2:50311767-50311786 Msa0075190:five_prime_UTR 25.0%
GATGGAAATTGTAAGTAAAG+TGG + chr1_2:50307753-50307772 None:intergenic 30.0%
GAATGAGAAATGAAATGAGA+TGG + chr1_2:50307771-50307790 None:intergenic 30.0%
GAAAAGTAATTAAGGGAGAA+AGG - chr1_2:50307874-50307893 Msa0075190:three_prime_UTR 30.0%
!!! AAGGGTACGTTTTTTTATAC+TGG - chr1_2:50307920-50307939 Msa0075190:three_prime_UTR 30.0%
AAAATAGAGGTAATTCAGCT+GGG + chr1_2:50307966-50307985 None:intergenic 30.0%
AAAAATAGAGGTAATTCAGC+TGG + chr1_2:50307967-50307986 None:intergenic 30.0%
!!! GCTGAATTACCTCTATTTTT+TGG - chr1_2:50307967-50307986 Msa0075190:exon 30.0%
! GTTTAGTTTAGGGACTAAAT+TGG - chr1_2:50308085-50308104 Msa0075190:CDS 30.0%
TTCTGCTTCTTCTATATTAC+CGG + chr1_2:50308349-50308368 None:intergenic 30.0%
!! TGGATTTTTGGATATGCATT+TGG - chr1_2:50308446-50308465 Msa0075190:intron 30.0%
ATTCAGCGTTTGTAGAATTA+AGG - chr1_2:50308481-50308500 Msa0075190:CDS 30.0%
AATAAGCTGTTTATCCAAAC+AGG + chr1_2:50308507-50308526 None:intergenic 30.0%
AAAATATGCATGCAATCTAC+AGG - chr1_2:50308804-50308823 Msa0075190:CDS 30.0%
AAGAAACATTCCCATAATCA+TGG - chr1_2:50308964-50308983 Msa0075190:CDS 30.0%
ACAGAATGTATAGACATTTC+CGG + chr1_2:50308994-50309013 None:intergenic 30.0%
GAAATGTCTATACATTCTGT+GGG - chr1_2:50308994-50309013 Msa0075190:CDS 30.0%
TAAGAATCAAAAAACCAGCA+AGG + chr1_2:50309086-50309105 None:intergenic 30.0%
!!! CTCTCTTTTTTTGTATGTCA+AGG - chr1_2:50309112-50309131 Msa0075190:CDS 30.0%
TTTGTATGTCAAGGAATTTG+TGG - chr1_2:50309121-50309140 Msa0075190:CDS 30.0%
TAGCATATACGAAAACAGAT+TGG - chr1_2:50309352-50309371 Msa0075190:CDS 30.0%
!! AGATTGGTTTCAATAACCAT+AGG - chr1_2:50309368-50309387 Msa0075190:CDS 30.0%
CCATAATAACTTTGCAAGAT+TGG + chr1_2:50309445-50309464 None:intergenic 30.0%
CCAATCTTGCAAAGTTATTA+TGG - chr1_2:50309442-50309461 Msa0075190:CDS 30.0%
CAAAGTTATTATGGACATAG+TGG - chr1_2:50309451-50309470 Msa0075190:CDS 30.0%
! GTTTTTCTTCTATATAGTGG+AGG - chr1_2:50309680-50309699 Msa0075190:CDS 30.0%
!! TTTTCTTCTATATAGTGGAG+GGG - chr1_2:50309682-50309701 Msa0075190:CDS 30.0%
TCTCTCTCAATAGAATTGAA+TGG - chr1_2:50309807-50309826 Msa0075190:CDS 30.0%
CTCTCTCAATAGAATTGAAT+GGG - chr1_2:50309808-50309827 Msa0075190:CDS 30.0%
AATAATTGGCTAAACTCGAT+AGG + chr1_2:50309883-50309902 None:intergenic 30.0%
ATCGAGTTTAGCCAATTATT+TGG - chr1_2:50309883-50309902 Msa0075190:CDS 30.0%
AATTACAAAGAGCTAGATCA+TGG + chr1_2:50309949-50309968 None:intergenic 30.0%
!! GATCTAGCTCTTTGTAATTA+CGG - chr1_2:50309950-50309969 Msa0075190:CDS 30.0%
AATTGTTGAGTGATAGAGAA+AGG - chr1_2:50310011-50310030 Msa0075190:intron 30.0%
TTTAGAAGCCATTAACAAAC+CGG + chr1_2:50310050-50310069 None:intergenic 30.0%
GAATTTCTCGAAATCAGAAA+TGG + chr1_2:50310218-50310237 None:intergenic 30.0%
! ATCTGCTCAAAAACAGTTTT+TGG - chr1_2:50310438-50310457 Msa0075190:CDS 30.0%
! CAAATTCAGAGCAAAAGTTT+TGG - chr1_2:50310607-50310626 Msa0075190:CDS 30.0%
TTCTTGGAAGAAGCTATATA+AGG - chr1_2:50310630-50310649 Msa0075190:intron 30.0%
! GATTGAATATTTCTGCAGAA+TGG - chr1_2:50310677-50310696 Msa0075190:intron 30.0%
TGAGGGTAAAATATCATCAT+TGG - chr1_2:50311384-50311403 Msa0075190:intron 30.0%
GGTAGAAGCAAAACAAAAAA+TGG - chr1_2:50311514-50311533 Msa0075190:intron 30.0%
AGGAAAGAAGAAGAAGAACA+AGG + chr1_2:50307723-50307742 None:intergenic 35.0%
GTAAGTAAAGTGGAAGATCT+AGG + chr1_2:50307743-50307762 None:intergenic 35.0%
CAGGAACAACCAAAAAATAG+AGG + chr1_2:50307979-50307998 None:intergenic 35.0%
! TAGTGCTGAAAGTATGACAT+AGG - chr1_2:50308154-50308173 Msa0075190:CDS 35.0%
AAAGTATGACATAGGAGAAG+AGG - chr1_2:50308162-50308181 Msa0075190:CDS 35.0%
! AACTTGTGATCAAGTTTTCC+AGG + chr1_2:50308321-50308340 None:intergenic 35.0%
TGGAAAACTTGATCACAAGT+TGG - chr1_2:50308320-50308339 Msa0075190:intron 35.0%
TTGTAGAATTAAGGCCTGTT+TGG - chr1_2:50308490-50308509 Msa0075190:CDS 35.0%
!! TTTGTGTGTGAGTTTTCAAG+TGG - chr1_2:50308690-50308709 Msa0075190:intron 35.0%
!! TTTTTGGTACATAGACGGAA+TGG + chr1_2:50308722-50308741 None:intergenic 35.0%
GGAAGATACGAGTATCAAAA+AGG - chr1_2:50308844-50308863 Msa0075190:CDS 35.0%
! GTCTTTGAGGGAATAGATAT+AGG - chr1_2:50308889-50308908 Msa0075190:CDS 35.0%
!! GAAAGGGCAATTTTGATCTT+AGG + chr1_2:50308925-50308944 None:intergenic 35.0%
GATTATGGGAATGTTTCTTG+CGG + chr1_2:50308963-50308982 None:intergenic 35.0%
GGAAATGTCTATACATTCTG+TGG - chr1_2:50308993-50309012 Msa0075190:CDS 35.0%
TCTAAAAGCAAAATCGTTGC+AGG - chr1_2:50309038-50309057 Msa0075190:CDS 35.0%
TGCAAAACAAGGTAGATTAC+GGG + chr1_2:50309175-50309194 None:intergenic 35.0%
GTGCAAAACAAGGTAGATTA+CGG + chr1_2:50309176-50309195 None:intergenic 35.0%
!!! TAATCTACCTTGTTTTGCAC+TGG - chr1_2:50309176-50309195 Msa0075190:CDS 35.0%
ACACTTTGACTAATGTCCTA+TGG + chr1_2:50309387-50309406 None:intergenic 35.0%
ATAAATGGAATCTCGATCCA+GGG - chr1_2:50309627-50309646 Msa0075190:CDS 35.0%
ATTTGAGAACGTAGATTAGG+GGG + chr1_2:50309716-50309735 None:intergenic 35.0%
CATTTGAGAACGTAGATTAG+GGG + chr1_2:50309717-50309736 None:intergenic 35.0%
CCATTTGAGAACGTAGATTA+GGG + chr1_2:50309718-50309737 None:intergenic 35.0%
TCCATTTGAGAACGTAGATT+AGG + chr1_2:50309719-50309738 None:intergenic 35.0%
AATCTACGTTCTCAAATGGA+CGG - chr1_2:50309719-50309738 Msa0075190:CDS 35.0%
! GAAAGGTGGTCTAAAATTGA+AGG + chr1_2:50309836-50309855 None:intergenic 35.0%
AAACAGACAGAGCAAATGAA+AGG + chr1_2:50309853-50309872 None:intergenic 35.0%
TTCATTTGCTCTGTCTGTTT+CGG - chr1_2:50309853-50309872 Msa0075190:CDS 35.0%
TATTTGGAAGAATTACTCCC+TGG - chr1_2:50309899-50309918 Msa0075190:CDS 35.0%
ATTTGGAAGAATTACTCCCT+GGG - chr1_2:50309900-50309919 Msa0075190:CDS 35.0%
TTAGAAGCCATTAACAAACC+GGG + chr1_2:50310049-50310068 None:intergenic 35.0%
ATCATCTGCACACTCAAAAT+TGG - chr1_2:50310192-50310211 Msa0075190:intron 35.0%
GAAATTCAAGAGACAATCTG+AGG - chr1_2:50310231-50310250 Msa0075190:intron 35.0%
! TGAGATGGTATAGTACTGAA+GGG + chr1_2:50310303-50310322 None:intergenic 35.0%
! GTTTAGAATACGCTGAACAA+AGG - chr1_2:50310323-50310342 Msa0075190:intron 35.0%
CAGTAACCATCCTTTAACAT+TGG + chr1_2:50310404-50310423 None:intergenic 35.0%
TGTTAAAGGATGGTTACTGT+TGG - chr1_2:50310405-50310424 Msa0075190:CDS 35.0%
!! TGCTCAAAAACAGTTTTTGG+AGG - chr1_2:50310441-50310460 Msa0075190:CDS 35.0%
ATCTATTATCAACGCTGCTT+TGG - chr1_2:50310468-50310487 Msa0075190:CDS 35.0%
GCTAAAGTTCAAATTGCACT+TGG - chr1_2:50310535-50310554 Msa0075190:CDS 35.0%
!!! AGAGCAAAAGTTTTGGTTCT+TGG - chr1_2:50310614-50310633 Msa0075190:intron 35.0%
TGACATCTAGAAGCAGAATA+CGG + chr1_2:50310954-50310973 None:intergenic 35.0%
!!! CTTTTAGAGCCTCTTTGTAA+AGG + chr1_2:50311183-50311202 None:intergenic 35.0%
!!! TGCAGTCAGAACTTTTTTGA+CGG - chr1_2:50311297-50311316 Msa0075190:intron 35.0%
!! TAATCTTGGCCTTTTTCACA+AGG - chr1_2:50311360-50311379 Msa0075190:intron 35.0%
!! GAGTTTGGTTTGGTTTGGTT+TGG + chr1_2:50307679-50307698 None:intergenic 40.0%
!! GTTTGGAGTTTGGTTTGGTT+TGG + chr1_2:50307684-50307703 None:intergenic 40.0%
TAAGGGAGAAAGGTTCTCTT+CGG - chr1_2:50307884-50307903 Msa0075190:three_prime_UTR 40.0%
! TTCGGAGGGTTTTTGTTGAA+GGG - chr1_2:50307902-50307921 Msa0075190:three_prime_UTR 40.0%
! GCATCTCAATTTTCTGCTGT+CGG - chr1_2:50308024-50308043 Msa0075190:CDS 40.0%
AGTGATCATTCTTTCCTACC+TGG - chr1_2:50308300-50308319 Msa0075190:intron 40.0%
! TGTGATCAAGTTTTCCAGGT+AGG + chr1_2:50308317-50308336 None:intergenic 40.0%
GAATTATCTCTGCGAGAAAG+TGG - chr1_2:50308366-50308385 Msa0075190:intron 40.0%
!! GCGTTCTTTGTTTCTGGAAA+GGG + chr1_2:50308941-50308960 None:intergenic 40.0%
TTCCCATAATCATGGTGAAC+CGG - chr1_2:50308972-50308991 Msa0075190:CDS 40.0%
TTCCGGTTCACCATGATTAT+GGG + chr1_2:50308977-50308996 None:intergenic 40.0%
TTTCCGGTTCACCATGATTA+TGG + chr1_2:50308978-50308997 None:intergenic 40.0%
CAGGCTCTTGAAAGGTTTAA+AGG - chr1_2:50309057-50309076 Msa0075190:CDS 40.0%
AGGTTTAAAGGTAACCTTGC+TGG - chr1_2:50309069-50309088 Msa0075190:CDS 40.0%
! TTGTGGTTTTTCGCTGCATA+TGG - chr1_2:50309138-50309157 Msa0075190:CDS 40.0%
CATTCAGCACCAAAGTTATC+AGG + chr1_2:50309500-50309519 None:intergenic 40.0%
! TGGTGCTGAATGTAAATTGC+AGG - chr1_2:50309508-50309527 Msa0075190:CDS 40.0%
TAAGACAAAGTAGCTTCACG+AGG + chr1_2:50309590-50309609 None:intergenic 40.0%
! GTGAAGCTACTTTGTCTTAC+CGG - chr1_2:50309591-50309610 Msa0075190:CDS 40.0%
!! ATTTATGAAGAAGTGCTCGC+CGG + chr1_2:50309613-50309632 None:intergenic 40.0%
CATAAATGGAATCTCGATCC+AGG - chr1_2:50309626-50309645 Msa0075190:CDS 40.0%
CCCTAATCTACGTTCTCAAA+TGG - chr1_2:50309715-50309734 Msa0075190:CDS 40.0%
TCATTTGCTCTGTCTGTTTC+GGG - chr1_2:50309854-50309873 Msa0075190:CDS 40.0%
CATGGAATCTTTCACTTCGA+TGG + chr1_2:50309931-50309950 None:intergenic 40.0%
TTGTAATTACGGAGCAGGTA+AGG - chr1_2:50309961-50309980 Msa0075190:CDS 40.0%
! CTGAGATGGTATAGTACTGA+AGG + chr1_2:50310304-50310323 None:intergenic 40.0%
CAGCGTATTCTAAACTGAGA+TGG + chr1_2:50310318-50310337 None:intergenic 40.0%
TGCAAAGTGCGTCATAAAAC+TGG - chr1_2:50310369-50310388 Msa0075190:intron 40.0%
AAGTGCGTCATAAAACTGGA+AGG - chr1_2:50310373-50310392 Msa0075190:intron 40.0%
GAAGGTGGTTCCAATGTTAA+AGG - chr1_2:50310391-50310410 Msa0075190:CDS 40.0%
GTGGTTCCAATGTTAAAGGA+TGG - chr1_2:50310395-50310414 Msa0075190:CDS 40.0%
TTTGGATCAGACTGGGAAAT+GGG - chr1_2:50310486-50310505 Msa0075190:CDS 40.0%
AGGTAAACAGCTAGAACAGA+AGG + chr1_2:50310785-50310804 None:intergenic 40.0%
GGAACTTGGAAGTGGAAATA+TGG - chr1_2:50310847-50310866 Msa0075190:intron 40.0%
GGCGTGTCTTTCAAAATCTA+AGG - chr1_2:50310920-50310939 Msa0075190:intron 40.0%
AGGCGTAATGTATGAAGCAA+AGG - chr1_2:50311156-50311175 Msa0075190:CDS 40.0%
GGCGTAATGTATGAAGCAAA+GGG - chr1_2:50311157-50311176 Msa0075190:CDS 40.0%
! GATGCTTTAGACATTGATCC+TGG - chr1_2:50311211-50311230 Msa0075190:CDS 40.0%
! GTCAAAAAAGTTCTGACTGC+AGG + chr1_2:50311298-50311317 None:intergenic 40.0%
!!! CTTTTTTGACGGATGCTCTA+CGG - chr1_2:50311308-50311327 Msa0075190:intron 40.0%
ACAGATTGAATGCTTCTGCT+TGG - chr1_2:50311335-50311354 Msa0075190:intron 40.0%
GCTTCTGCTTGGTATAATCT+TGG - chr1_2:50311346-50311365 Msa0075190:intron 40.0%
! CGAAGCTACAGAATGTTTTC+AGG - chr1_2:50311408-50311427 Msa0075190:intron 40.0%
TGTCATCTGAAAGGTTCAAG+TGG + chr1_2:50311460-50311479 None:intergenic 40.0%
!! GTTTGGTTTGTGAGAGAGTG+GGG + chr1_2:50307662-50307681 None:intergenic 45.0%
!! GGTTTGGTTTGTGAGAGAGT+GGG + chr1_2:50307663-50307682 None:intergenic 45.0%
!! TGGTTTGGTTTGTGAGAGAG+TGG + chr1_2:50307664-50307683 None:intergenic 45.0%
! CTTCGGAGGGTTTTTGTTGA+AGG - chr1_2:50307901-50307920 Msa0075190:three_prime_UTR 45.0%
CATAGGAGAAGAGGTGAATC+TGG - chr1_2:50308171-50308190 Msa0075190:CDS 45.0%
AGAAGAGGTGAATCTGGACA+AGG - chr1_2:50308177-50308196 Msa0075190:CDS 45.0%
ACAATGAAGTTCCTACGCTC+AGG - chr1_2:50308204-50308223 Msa0075190:CDS 45.0%
CAATGAAGTTCCTACGCTCA+GGG - chr1_2:50308205-50308224 Msa0075190:CDS 45.0%
AATGAAGTTCCTACGCTCAG+GGG - chr1_2:50308206-50308225 Msa0075190:CDS 45.0%
GTGACAAGAGATTCGGATGA+AGG + chr1_2:50308261-50308280 None:intergenic 45.0%
ATCCGAATCTCTTGTCACCA+GGG - chr1_2:50308263-50308282 Msa0075190:CDS 45.0%
ACTTCCTGAAAAGAAGTCCC+TGG + chr1_2:50308283-50308302 None:intergenic 45.0%
! CTTGATCACAAGTTGGACAC+CGG - chr1_2:50308327-50308346 Msa0075190:intron 45.0%
AAGTGGCGTGTTAAACTACG+AGG - chr1_2:50308383-50308402 Msa0075190:intron 45.0%
! CAGGAAGCTAGAGCATTACT+AGG - chr1_2:50308823-50308842 Msa0075190:CDS 45.0%
AGCTGCATTACACGTCTTTG+AGG - chr1_2:50308876-50308895 Msa0075190:CDS 45.0%
GCTGCATTACACGTCTTTGA+GGG - chr1_2:50308877-50308896 Msa0075190:CDS 45.0%
!! GGCGTTCTTTGTTTCTGGAA+AGG + chr1_2:50308942-50308961 None:intergenic 45.0%
AATCGTTGCAGGCTCTTGAA+AGG - chr1_2:50309049-50309068 Msa0075190:CDS 45.0%
AGTCTCACCAGTGCAAAACA+AGG + chr1_2:50309186-50309205 None:intergenic 45.0%
! TTTGCACTGGTGAGACTGTT+TGG - chr1_2:50309189-50309208 Msa0075190:CDS 45.0%
GTGGAATCTTCATTGCCTGA+AGG - chr1_2:50309470-50309489 Msa0075190:CDS 45.0%
AAGTTATCAGGCAAGCCTTC+AGG + chr1_2:50309488-50309507 None:intergenic 45.0%
GAAGGCTTGCCTGATAACTT+TGG - chr1_2:50309488-50309507 Msa0075190:CDS 45.0%
TTGAGCTGCTTCCAGAATTG+TGG - chr1_2:50309549-50309568 Msa0075190:CDS 45.0%
TCAGCAAGCTTCCACAATTC+TGG + chr1_2:50309563-50309582 None:intergenic 45.0%
GGCGAGCACTTCTTCATAAA+TGG - chr1_2:50309612-50309631 Msa0075190:CDS 45.0%
TGAATCTTTGCTACAGTCCC+TGG + chr1_2:50309647-50309666 None:intergenic 45.0%
TCCGGCAAACAACATAGAAG+AGG - chr1_2:50309751-50309770 Msa0075190:CDS 45.0%
! GCCTCTTCTATGTTGTTTGC+CGG + chr1_2:50309755-50309774 None:intergenic 45.0%
CAGACAGAGCAAATGAAAGG+TGG + chr1_2:50309850-50309869 None:intergenic 45.0%
GCTCTTTGTAATTACGGAGC+AGG - chr1_2:50309956-50309975 Msa0075190:CDS 45.0%
! AGGTAAGGACTTGATGGCAA+TGG - chr1_2:50309976-50309995 Msa0075190:CDS 45.0%
GTTGAGTGATAGAGAAAGGC+CGG - chr1_2:50310015-50310034 Msa0075190:intron 45.0%
!! ACACGTTCCCGGTTTGTTAA+TGG - chr1_2:50310039-50310058 Msa0075190:intron 45.0%
!! AACCCTAGTCTTGCAGAAGA+AGG - chr1_2:50310082-50310101 Msa0075190:intron 45.0%
!! ACCCTAGTCTTGCAGAAGAA+GGG - chr1_2:50310083-50310102 Msa0075190:intron 45.0%
TACTGAAGGGTCTCTCATTC+CGG + chr1_2:50310290-50310309 None:intergenic 45.0%
TGCGTCATAAAACTGGAAGG+TGG - chr1_2:50310376-50310395 Msa0075190:CDS 45.0%
AAGGATGGTTACTGTTGGCA+CGG - chr1_2:50310410-50310429 Msa0075190:CDS 45.0%
CTTTGGATCAGACTGGGAAA+TGG - chr1_2:50310485-50310504 Msa0075190:CDS 45.0%
AAGCTGAGTGTACGTCTCAA+TGG + chr1_2:50310575-50310594 None:intergenic 45.0%
CTCGGTTACCCTATCACAAA+TGG + chr1_2:50310818-50310837 None:intergenic 45.0%
TGTACATCAGTCTTTCCCAG+TGG - chr1_2:50310886-50310905 Msa0075190:intron 45.0%
GCTTCTAGATGTCATGCACT+CGG - chr1_2:50310960-50310979 Msa0075190:intron 45.0%
AGCAAAGGGCCTTTACAAAG+AGG - chr1_2:50311171-50311190 Msa0075190:CDS 45.0%
GTACTTCAGCAGTGGAGATT+AGG + chr1_2:50311249-50311268 None:intergenic 45.0%
! TACCCTCAGCCTTGTGAAAA+AGG + chr1_2:50311372-50311391 None:intergenic 45.0%
!! CTCTAGAACACAACCCTTTG+AGG + chr1_2:50311495-50311514 None:intergenic 45.0%
CTCAAAGGGTTGTGTTCTAG+AGG - chr1_2:50311493-50311512 Msa0075190:intron 45.0%
!!! ATAGTTTTTTTTTTTTTTTT+TGG + chr1_2:50308738-50308757 None:intergenic 5.0%
! GAGGGGTTTGGAGTTTGGTT+TGG + chr1_2:50307689-50307708 None:intergenic 50.0%
GAAGAAGAACAAGGTGCGCA+CGG + chr1_2:50307714-50307733 None:intergenic 50.0%
GGAGAAAGGTTCTCTTCGGA+GGG - chr1_2:50307888-50307907 Msa0075190:three_prime_UTR 50.0%
GAGGTGAATCTGGACAAGGA+AGG - chr1_2:50308181-50308200 Msa0075190:CDS 50.0%
CATCCGAATCTCTTGTCACC+AGG - chr1_2:50308262-50308281 Msa0075190:CDS 50.0%
GTCCCTGGTGACAAGAGATT+CGG + chr1_2:50308268-50308287 None:intergenic 50.0%
! GTCACCAGGGACTTCTTTTC+AGG - chr1_2:50308276-50308295 Msa0075190:CDS 50.0%
! CTTGCGGCGTTCTTTGTTTC+TGG + chr1_2:50308947-50308966 None:intergenic 50.0%
AATGGACGGCTCGTTTGTTC+CGG - chr1_2:50309733-50309752 Msa0075190:CDS 50.0%
CACTTCGATGGATAGTCCCA+GGG + chr1_2:50309919-50309938 None:intergenic 50.0%
TCACTTCGATGGATAGTCCC+AGG + chr1_2:50309920-50309939 None:intergenic 50.0%
AACAAACCGGGAACGTGTTC+CGG + chr1_2:50310037-50310056 None:intergenic 50.0%
CCCCTTCTTCTGCAAGACTA+GGG + chr1_2:50310087-50310106 None:intergenic 50.0%
!! CCCTAGTCTTGCAGAAGAAG+GGG - chr1_2:50310084-50310103 Msa0075190:intron 50.0%
ACCCCTTCTTCTGCAAGACT+AGG + chr1_2:50310088-50310107 None:intergenic 50.0%
!! TCAGAGAGCACTTGAGAGCT+TGG - chr1_2:50310117-50310136 Msa0075190:intron 50.0%
! AGAGCACTTGAGAGCTTGGA+CGG - chr1_2:50310121-50310140 Msa0075190:intron 50.0%
! ATCTGAGGCACTTCAAGCCT+TGG - chr1_2:50310246-50310265 Msa0075190:intron 50.0%
CTTCAAGCCTTGGAAACTGC+TGG - chr1_2:50310256-50310275 Msa0075190:intron 50.0%
! AACGCTGCTTTGGATCAGAC+TGG - chr1_2:50310478-50310497 Msa0075190:CDS 50.0%
! ACGCTGCTTTGGATCAGACT+GGG - chr1_2:50310479-50310498 Msa0075190:CDS 50.0%
TCAGACTGGGAAATGGGATC+AGG - chr1_2:50310492-50310511 Msa0075190:CDS 50.0%
CAGACTGGGAAATGGGATCA+GGG - chr1_2:50310493-50310512 Msa0075190:CDS 50.0%
CCAAGTTCCTAGCACGATCT+CGG + chr1_2:50310836-50310855 None:intergenic 50.0%
TCGTGCTAGGAACTTGGAAG+TGG - chr1_2:50310839-50310858 Msa0075190:intron 50.0%
GCGTCTAAGTACTTCAGCAG+TGG + chr1_2:50311257-50311276 None:intergenic 50.0%
!! TGGCCTTTTTCACAAGGCTG+AGG - chr1_2:50311366-50311385 Msa0075190:intron 50.0%
!! GGCCTTTTTCACAAGGCTGA+GGG - chr1_2:50311367-50311386 Msa0075190:intron 50.0%
! CGGATGAGGGGTTTGGAGTT+TGG + chr1_2:50307694-50307713 None:intergenic 55.0%
AACAAGGTGCGCACGGATGA+GGG + chr1_2:50307707-50307726 None:intergenic 55.0%
GGGAGAAAGGTTCTCTTCGG+AGG - chr1_2:50307887-50307906 Msa0075190:three_prime_UTR 55.0%
CTACGCTCAGGGGAGCAATT+GGG - chr1_2:50308216-50308235 Msa0075190:CDS 55.0%
ATTGCAGGAGACCGTGAGCA+AGG - chr1_2:50309523-50309542 Msa0075190:CDS 55.0%
CAGCTCAACTGCCTTGCTCA+CGG + chr1_2:50309537-50309556 None:intergenic 55.0%
CGGAGCAGGTAAGGACTTGA+TGG - chr1_2:50309970-50309989 Msa0075190:CDS 55.0%
CGTTCTGCCAGCAGTTTCCA+AGG + chr1_2:50310266-50310285 None:intergenic 55.0%
GAAACTGCTGGCAGAACGAC+CGG - chr1_2:50310268-50310287 Msa0075190:intron 55.0%
AGGGTAACCGAGATCGTGCT+AGG - chr1_2:50310826-50310845 Msa0075190:intron 55.0%
CCGAGATCGTGCTAGGAACT+TGG - chr1_2:50310833-50310852 Msa0075190:intron 55.0%
TTCCCAGTGGCATGATGCAG+AGG - chr1_2:50310899-50310918 Msa0075190:intron 55.0%
TGGAGATTAGGCTGCGGACA+TGG + chr1_2:50311237-50311256 None:intergenic 55.0%
CAGCAGTGGAGATTAGGCTG+CGG + chr1_2:50311243-50311262 None:intergenic 55.0%
TGTGAGAGAGTGGGGTCCAG+TGG + chr1_2:50307654-50307673 None:intergenic 60.0%
ACAAGGTGCGCACGGATGAG+GGG + chr1_2:50307706-50307725 None:intergenic 60.0%
GAACAAGGTGCGCACGGATG+AGG + chr1_2:50307708-50307727 None:intergenic 60.0%
CCAATTGCTCCCCTGAGCGT+AGG + chr1_2:50308218-50308237 None:intergenic 60.0%
CCTACGCTCAGGGGAGCAAT+TGG - chr1_2:50308215-50308234 Msa0075190:CDS 60.0%
GAAAGGCCGGAACACGTTCC+CGG - chr1_2:50310028-50310047 Msa0075190:intron 60.0%
CGCCTCTGCATCATGCCACT+GGG + chr1_2:50310904-50310923 None:intergenic 60.0%
ACGCCTCTGCATCATGCCAC+TGG + chr1_2:50310905-50310924 None:intergenic 60.0%
ATTAGGCTGCGGACATGGCC+AGG + chr1_2:50311232-50311251 None:intergenic 60.0%
GTGCGCACGGATGAGGGGTT+TGG + chr1_2:50307701-50307720 None:intergenic 65.0%
CGCTCAGGGGAGCAATTGGG+AGG - chr1_2:50308219-50308238 Msa0075190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50307650 50311803 50307650 ID=Msa0075190;Name=Msa0075190
chr1_2 mRNA 50307650 50311803 50307650 ID=Msa0075190-mRNA-1;Parent=Msa0075190;Name=Msa0075190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=324|1|1|1|0.8|0.66|6|326|713
chr1_2 exon 50307650 50308295 50307650 ID=Msa0075190-mRNA-1:exon:15501;Parent=Msa0075190-mRNA-1
chr1_2 exon 50308472 50308625 50308472 ID=Msa0075190-mRNA-1:exon:15500;Parent=Msa0075190-mRNA-1
chr1_2 exon 50308802 50310018 50308802 ID=Msa0075190-mRNA-1:exon:15499;Parent=Msa0075190-mRNA-1
chr1_2 exon 50310375 50310627 50310375 ID=Msa0075190-mRNA-1:exon:15498;Parent=Msa0075190-mRNA-1
chr1_2 exon 50311049 50311296 50311049 ID=Msa0075190-mRNA-1:exon:15497;Parent=Msa0075190-mRNA-1
chr1_2 exon 50311530 50311803 50311530 ID=Msa0075190-mRNA-1:exon:15496;Parent=Msa0075190-mRNA-1
chr1_2 five_prime_UTR 50311530 50311803 50311530 ID=Msa0075190-mRNA-1:five_prime_utr;Parent=Msa0075190-mRNA-1
chr1_2 five_prime_UTR 50311247 50311296 50311247 ID=Msa0075190-mRNA-1:five_prime_utr;Parent=Msa0075190-mRNA-1
chr1_2 CDS 50311049 50311246 50311049 ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1
chr1_2 CDS 50310375 50310627 50310375 ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1
chr1_2 CDS 50308802 50310018 50308802 ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1
chr1_2 CDS 50308472 50308625 50308472 ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1
chr1_2 CDS 50307976 50308295 50307976 ID=Msa0075190-mRNA-1:cds;Parent=Msa0075190-mRNA-1
chr1_2 three_prime_UTR 50307650 50307975 50307650 ID=Msa0075190-mRNA-1:three_prime_utr;Parent=Msa0075190-mRNA-1
Gene Sequence

>Msa0075190

ATGAAGTTCCTACGCTCAGGGGAGCAATTGGGAGGAACATATGAAACACAACCTTCATCCGAATCTCTTGTCACCAGGGACTTCTTTTCAGGAAGTGATCATTCTTTCCTACCTGGAAAACTTGATCACAAGTTGGACACCGGTAATATAGAAGAAGCAGAATTATCTCTGCGAGAAAGTGGCGTGTTAAACTACGAGGAAGCTAGAGCATTACTAGGAAGATACGAGTATCAAAAAGGAAATTTAGTAGCTGCATTACACGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTGGGCTTACTGTTTGAAGCACTCTTTCTAAAAGCAAAATCGTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTACCGGCGAGCACTTCTTCATAAATGGAATCTCGATCCAGGGACTGTAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGTGATGCCCCCTAATCTACGTTCTCAAATGGACGGCTCGTTTGTTCCGGCAAACAACATAGAAGAGGCTATACTTCTTGTAATGATTTTGCTCAGAAAAGTCTCTCTCAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCGGGAGACCTATCGAGTTTAGCCAATTATTTGGAAGAATTACTCCCTGGGACTATCCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTAATTACGGAGCAGGTAAGGACTTGATGGCAATGGATCTTTTAAGAAAATTGTTGAGTGATAGAGAAAGGCCGGAACACGTTCCCGGTTTGTTAATGGCTTCTAAAATTTGCTGCGAGAACCCTAGTCTTGCAGAAGAAGGGGTAAGCTTTTCTCAGAGAGCACTTGAGAGCTTGGACGGAAGATGTAAGCAGTTAGAAAATGTTGCAAAATTCTATCTTGGTGTTTCATCATCTGCACACTCAAAATTGGCCATTTCTGATTTCGAGAAATTCAAGAGACAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGCAGAACGACCGGAATGAGAGACCCTTCAGTACTATACCATCTCAGTTTAGAATACGCTGAACAAAGGAAGTTAGACGATGCACTTTATTATGCAAAGTGCGTCATAAAACTGGAAGGTGGTTCCAATGTTAAAGGATGGTTACTGTTGGCACGGATATTATCTGCTCAAAAACAGTTTTTGGAGGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAAGTTCAAATTGCACTTGGACAGTTAAAGAACGCCATTGAGACGTACACTCAGCTTCTCGCTGTTCTTCAAATTCAGAGCAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGGTAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCAATCAAACCGTATTCTGCTTCTAGATGTCATGCACTCGGCGTAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGCGATGCTTTAGACATTGATCCTGGCCATGTCCGCAGCCTAATCTCCACTGCTGAAGTACTTAGACGCTGCAGTAATAAATCAAATCCTGCAGTCAGAACTTTTTTGACGGATGCTCTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGTAAAATATCATCATTGGTCGAAGCTACAGAATGTTTTCAGGCAGCACACTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA

Protein sequence

>Msa0075190

MKFLRSGEQLGGTYETQPSSESLVTRDFFSGSDHSFLPGKLDHKLDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLFEALFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHKWNLDPGTVAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPANNIEEAILLVMILLRKVSLNRIEWDPSILDHLSFALSVSGDLSSLANYLEELLPGTIHRSERFHDLALCNYGAGKDLMAMDLLRKLLSDRERPEHVPGLLMASKICCENPSLAEEGVSFSQRALESLDGRCKQLENVAKFYLGVSSSAHSKLAISDFEKFKRQSEALQALETAGRTTGMRDPSVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKQFLEAESIINAALDQTGKWDQGDLLRTKAKVQIALGQLKNAIETYTQLLAVLQIQSKSFGSWKKLYKGNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGVMYEAKGLYKEALKAFRDALDIDPGHVRSLISTAEVLRRCSNKSNPAVRTFLTDALRHDRLNASAWYNLGLFHKAEGKISSLVEATECFQAAHSLEESTPLEPFR*