AlfalfaGEDB | Msa0816710

M. sativa cultivar zhongmu-4 / Msa0816710

KEGG: -
GO: GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141
PFAM: PF05605.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0816710	XP_003616411.1	93.636	1147	30	2	1	1147	1	1104	0.0	2213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0816710	sp\|Q8VZ79\|IDN2_ARATH	48.920	648	285	8	504	1147	24	629	0.0	598
Msa0816710	sp\|Q8VZ79\|IDN2_ARATH	51.042	96	47	0	264	359	24	119	2.72e-22	107
Msa0816710	sp\|Q8VZ79\|IDN2_ARATH	40.458	131	67	4	131	256	24	148	8.17e-18	92.8
Msa0816710	sp\|Q8VZ79\|IDN2_ARATH	49.451	91	45	1	25	114	29	119	3.83e-17	90.5
Msa0816710	sp\|Q8VZ79\|IDN2_ARATH	50.000	86	41	1	388	473	27	110	1.41e-15	85.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0816710	G7KBR6	93.636	1147	30	2	1	1147	1	1104	0.0	2213

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0816710	-0.838929	2.147067e-57	-8.615850e-47
Msa0002460	Msa0816710	0.805730	1.159036e-49	-8.615850e-47
Msa0002710	Msa0816710	0.803846	2.869118e-49	-8.615850e-47
Msa0003700	Msa0816710	0.839584	1.451965e-57	-8.615850e-47
Msa0003890	Msa0816710	0.818946	1.503134e-52	-8.615850e-47
Msa0006110	Msa0816710	0.860728	1.687305e-63	-8.615850e-47
Msa0008670	Msa0816710	0.832732	7.991675e-56	-8.615850e-47
Msa0011170	Msa0816710	0.810134	1.340844e-50	-8.615850e-47
Msa0011500	Msa0816710	0.841925	3.535745e-58	-8.615850e-47
Msa0012530	Msa0816710	0.808225	3.437927e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0816710	MtrunA17_Chr5g0435301	93.636	1147	30	2	1	1147	1	1104	0.0	2213
Msa0816710	MtrunA17_Chr3g0111661	61.573	661	211	6	489	1147	5	624	0.0	788
Msa0816710	MtrunA17_Chr3g0111661	60.194	103	40	1	246	348	2	103	1.77e-30	129
Msa0816710	MtrunA17_Chr3g0111661	56.897	116	41	3	117	223	1	116	2.02e-29	125
Msa0816710	MtrunA17_Chr3g0111661	58.095	105	41	2	367	471	2	103	5.28e-28	121
Msa0816710	MtrunA17_Chr3g0111661	48.872	133	61	4	1	132	1	127	3.80e-26	115
Msa0816710	MtrunA17_Chr4g0001231	40.155	645	323	13	507	1146	22	608	2.91e-132	418
Msa0816710	MtrunA17_Chr4g0001231	41.121	107	52	4	25	121	24	129	9.66e-15	79.0
Msa0816710	MtrunA17_Chr4g0001231	44.048	84	41	3	136	214	24	106	1.41e-13	75.5
Msa0816710	MtrunA17_Chr4g0001231	41.860	86	45	2	267	348	22	106	2.06e-13	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0816710	AT3G48670.2	48.920	648	285	8	504	1147	24	629	0.0	598
Msa0816710	AT3G48670.2	51.042	96	47	0	264	359	24	119	2.77e-23	107
Msa0816710	AT3G48670.2	40.458	131	67	4	131	256	24	148	8.30e-19	92.8
Msa0816710	AT3G48670.2	49.451	91	45	1	25	114	29	119	3.90e-18	90.5
Msa0816710	AT3G48670.2	50.000	86	41	1	388	473	27	110	1.43e-16	85.5
Msa0816710	AT3G48670.1	48.920	648	285	8	504	1147	24	629	0.0	598
Msa0816710	AT3G48670.1	51.042	96	47	0	264	359	24	119	2.77e-23	107
Msa0816710	AT3G48670.1	40.458	131	67	4	131	256	24	148	8.30e-19	92.8
Msa0816710	AT3G48670.1	49.451	91	45	1	25	114	29	119	3.90e-18	90.5
Msa0816710	AT3G48670.1	50.000	86	41	1	388	473	27	110	1.43e-16	85.5

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Find 259 sgRNAs with CRISPR-Local

Find 525 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGATTATTTGTACA+GGG	0.638147	5_3:+51240902	Msa0816710:CDS
AAAACCGGACTATGTGTACA+GGG	0.646630	5_3:+51241636	Msa0816710:CDS
AAAACGGGATTACGTGTACA+GGG	0.683449	5_3:+51242170	Msa0816710:CDS
AAAATCCGGTCTTTATGCGT+GGG	0.559938	5_3:+51243471	Msa0816710:CDS
AAAGAGAGGTATCAGAGAGA+AGG	0.584942	5_3:+51241702	Msa0816710:CDS
AAAGCCTGCAAATAAATATT+TGG	0.216840	5_3:+51243090	Msa0816710:CDS
AAAGGCAGTTTGTATGGCCA+TGG	0.546980	5_3:+51243182	Msa0816710:CDS
AAAGGCGGATCATCTGGCTT+TGG	0.451279	5_3:+51242254	Msa0816710:CDS
AAATCCTTGAACACGCTTCT+GGG	0.387945	5_3:+51241659	Msa0816710:CDS
AAATCCTTGAACATGCTTCC+GGG	0.383309	5_3:+51242193	Msa0816710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTGAAGAAGAAGCTA+TGG	-	chr5_3:51238916-51238935	None:intergenic	30.0%
ATGAAGAAAAAAAGAGAGGA+AGG	-	chr5_3:51238990-51239009	None:intergenic	30.0%
CATGATGAAGAAAAAAAGAG+AGG	-	chr5_3:51238994-51239013	None:intergenic	30.0%
AATATGCTGAAAACTACTTG+TGG	+	chr5_3:51239488-51239507	Msa0816710:intron	30.0%
ATATGCTGAAAACTACTTGT+GGG	+	chr5_3:51239489-51239508	Msa0816710:intron	30.0%
GATTCAAATTTCCGTATTTG+CGG	-	chr5_3:51239687-51239706	None:intergenic	30.0%
TTAATAACTTCTCAGATTGG+TGG	+	chr5_3:51239721-51239740	Msa0816710:intron	30.0%
TGGCTGCTATAAATTTAGAT+TGG	+	chr5_3:51239741-51239760	Msa0816710:intron	30.0%
TCCATTGTAAGCATTAAATC+TGG	+	chr5_3:51239770-51239789	Msa0816710:intron	30.0%
TCCAGATTTAATGCTTACAA+TGG	-	chr5_3:51239774-51239793	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	51238838	51247223	51238838	ID=Msa0816710;Name=Msa0816710
chr5_3	mRNA	51238838	51247223	51238838	ID=Msa0816710-mRNA-1;Parent=Msa0816710;Name=Msa0816710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=176\|0.66\|0.69\|0.92\|0.91\|0.84\|13\|267\|1206
chr5_3	exon	51238838	51238977	51238838	ID=Msa0816710-mRNA-1:exon:15387;Parent=Msa0816710-mRNA-1
chr5_3	exon	51240221	51240572	51240221	ID=Msa0816710-mRNA-1:exon:15388;Parent=Msa0816710-mRNA-1
chr5_3	exon	51240736	51241119	51240736	ID=Msa0816710-mRNA-1:exon:15389;Parent=Msa0816710-mRNA-1
chr5_3	exon	51241452	51241814	51241452	ID=Msa0816710-mRNA-1:exon:15390;Parent=Msa0816710-mRNA-1
chr5_3	exon	51241980	51242336	51241980	ID=Msa0816710-mRNA-1:exon:15391;Parent=Msa0816710-mRNA-1
chr5_3	exon	51242753	51243745	51242753	ID=Msa0816710-mRNA-1:exon:15392;Parent=Msa0816710-mRNA-1
chr5_3	exon	51243932	51244113	51243932	ID=Msa0816710-mRNA-1:exon:15393;Parent=Msa0816710-mRNA-1
chr5_3	exon	51244439	51244528	51244439	ID=Msa0816710-mRNA-1:exon:15394;Parent=Msa0816710-mRNA-1
chr5_3	exon	51244610	51244632	51244610	ID=Msa0816710-mRNA-1:exon:15395;Parent=Msa0816710-mRNA-1
chr5_3	exon	51244820	51245162	51244820	ID=Msa0816710-mRNA-1:exon:15396;Parent=Msa0816710-mRNA-1
chr5_3	exon	51245249	51245458	51245249	ID=Msa0816710-mRNA-1:exon:15397;Parent=Msa0816710-mRNA-1
chr5_3	exon	51245786	51245965	51245786	ID=Msa0816710-mRNA-1:exon:15398;Parent=Msa0816710-mRNA-1
chr5_3	exon	51246777	51247223	51246777	ID=Msa0816710-mRNA-1:exon:15399;Parent=Msa0816710-mRNA-1
chr5_3	five_prime_UTR	51238838	51238977	51238838	ID=Msa0816710-mRNA-1:five_prime_utr;Parent=Msa0816710-mRNA-1
chr5_3	five_prime_UTR	51240221	51240256	51240221	ID=Msa0816710-mRNA-1:five_prime_utr;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51240257	51240572	51240257	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51240736	51241119	51240736	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51241452	51241814	51241452	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51241980	51242336	51241980	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51242753	51243745	51242753	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51243932	51244113	51243932	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51244439	51244528	51244439	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51244610	51244632	51244610	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51244820	51245162	51244820	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51245249	51245458	51245249	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51245786	51245965	51245786	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	CDS	51246777	51246956	51246777	ID=Msa0816710-mRNA-1:cds;Parent=Msa0816710-mRNA-1
chr5_3	three_prime_UTR	51246957	51247223	51246957	ID=Msa0816710-mRNA-1:three_prime_utr;Parent=Msa0816710-mRNA-1

Gene Sequence

>Msa0816710

ATGGCTCACTGCTCTATCAAGGATACCGGTATAGCGGAATCCCAGTTGAGTTGGTGGTATCTCGTATCATCTTACGAAGAACTCAAAACAGGGAAACAAAAGGTAAAAACCTCGGCCGAGAGTTTCAGTTGTCCGTACTGCCCCGAGAGGAAACAGGATTATAAGTTAAATGAACTCCTTAATCACGCCACTGGGATTGGTAGGAGTAGTTCAGAGAAGAGAAGTGCTAAAGAGAAGGGTAGTCATTTGGCTTTGGTAAAATATTTGGAGCAAGATCTTAACAGTAAGGATGGTGCATCGAGACCTATAGATCAAGTTACGAACACAATAAGTCCAGGACAAACAGTAATGTCTCACTGTTCTATCAAGGATACCGATATAAGTTGGTGGTATGTAGATACAGCTTATGAAGAGCTCAAAAATGGAACTCGGAATGTGAAAACCTCAGACGGGACTTTCATATGCCCGTACTGCCCTAATAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCTTTTATGGTTGGTCGGAGTAGTTCAGATAAGAGAAGTGCAAGAGAAAGAGCTAATCATCTTGCTTTGTTGAAATATTTGGAAAAGGATATTACGAGTATGCCTGGACCGTCAAAGCCTGTTGATAAAGGTGATCCTGATCCTGCTGTTTGCGATATACCACGGAAATTTTTTCGTTCTAGTACAAAATTGATAAGTCAAGGACAAACTGTCACGGCTCCATGCTCTAACAAGGATACTGGTTCAAGTGATCCTCGAATAAGTTGGTTGTATGTAGATAAATTTTATCAAGAACTCAAGAATGGAAGTCTCAAAGTGAGAATCTCAGATGAGGCTTTCACTTGTCCATACTGCCCGAAAATGAAAAAACCGGACTATGTGTACAGGGAAATCCTTGAACACGCTTCTGGGGTCGGTCAGAGTAGTTCGCAAAAGAGAGGTATCAGAGAGAAGGCAACTCATCTGGCTTTAATGAAATATTTGAAACAGGATATTATATATGTGCCTGCTCCATCAAAACCTGTGATTGAAGGTGATTCTTCTGGAGCCATGATACAAAGCCGAGAAGAAAATGCGACGACTCGCTGCTCCGACAAAGATTCTGATAAAAGTGCATCTCAAATAAATTTAGGGCAATTAAAAAGAACATATGAACAGCTCAAAAAGGGGATTCAAAACGTGAGAACCTCAGATAAGACTTTCACTTGCCCATACTGCCCTAATAATAAAAGGATAAAACGGGATTACGTGTACAGGGAAATCCTTGAACATGCTTCCGGGGTGGGTTGGAGTATCTCACAAACTAGAACTGACATTGAAAAGGCGGATCATCTGGCTTTGGTTAAATATTTGAAAAAGGATCTTATAAATGTCGGTGGTCCTTCAGAACCAACGAAGAAAGGCACCATAATGTTGAACCGAGGAGTAACTGTAACAGGTCACCTCTCTGAGAAGGATGCTAATAATAGTGCATCTCAAATAAATGCGTTGTTTGTAAATAAATCCTATGCAGAACTCAAGAAGGGAATTCACAAGGTCAAAACATCAGAAGATACTTTCTCATGTCCGTATTGCCCTAAGAGAAAATGCAATTATAGGTACAGCGAACTCCTTAATCATGCTTTAGGGGTAGGTCAAAGTGACGCACAAAGGAGAAGTGTATTGGAGAAGGCCAACCATCTAGCTTTAGTGAAATATTTGGAAAAGGATCTTATGACTATGAATGTGGAACGTCCGTTAAAGCCTGCAAATAAATATTTGGAAAACAATCTTATGAATGTGGAACAAAATCGAACAAAACCAGTGAATGAAAACATTCTTGTCAATTCTGAAAGGCAGTTTGTATGGCCATGGACTGGGATTGTGGTAAATATTCCCACTAGCCAAACCGAAGATGGACGATGTATTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATATCGAATAAGGGGTTTTAATCCACGTAGAGTCCGAACGCTTTGGAATTCATGGGGTCACACCGGAGCTGCAGTCGTGGAATTCAATAAAAGTTGGCTAGGGTTATATAATGCATTGGCATTTGAAAGGGCGTATGAATTAGATTGTCACGGGAAAAAGGACTGGCTTTCTTGTAGTGAACAAAAATCCGGTCTTTATGCGTGGGTTGCCCGAGCTGATGACTACAAAGTGAACAACATAATCGGGGAACAACTACAAAAGATGGATGTTAAAACAATACCTGAAATCATGGAGCAAGATGCTAGAAGGTTCAATAGACTCGTGCAGAGTATGCATAACATTCTTCAAGTAAAGAACAACAAGATAAAAGAAATGGAAGTAGTATGCAATGAAATTACACTTCGCATGGACATTGTGATGGGCGAAATAGATAGACTTGCTCAATCTCACAGTCAAGAGATGAAGAAAATACAGTCAAGTGCAAATCAACACTTTCAGAGTGTTTTGAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAACTTGAGTTGCGAAGAATTGAACTGGAAAAACGTGAGGCACGTAATGAAAGTGAAAGGAAAAAGTTGGATGAAGAGATTAACAAGACTGCAACGAAAAATCACTTTCTTCAAATGGCTGCTTTGGAGCAACAAAAAGCTGGTGAAAATGTTTTGAAACTTGCTGCAGATCAAAAGGAAGGAAAACCTAATCTCATTCGTCTTAGTCAGCAAAGTGGCAAGCTGATAATGGTACTTGACTATCTATTTATCCAGCGGCAAAAAGAACAACTCCATGCCAAAATCATCCAGCTTGAAAAACAACTAAATGTGAAACAAAAACTGGAATTGGAGATTCAGCAACTAAGAGGAAAACTAAACGTCATGAAGCACATGGAAGATGATGGAGAACATGATGTTCTGGATATGATGGATGCCTTACATATAGATTTAAGAGAGAAGGAACAGTCACTTCGAGACATGGATGCATTGAACCAAACTCTGATCATTAAAGAGCGTAAGAGCAATGATGAACTGCAGGAAGCTCGAAAGGAATTGATTACTACCATTAAAGAGATGCCAAGTTGTGCCGATATTCGTGTGAAGAGAATGGGGGAGCTAGACTTTAGACCATTTCTAGAAGCTATGAAGAAAAAATATAATGAAGATGTTGCAGAAGATAGAGCTTCTGAACTGTGTTCGTTGTGGGAAGAGTACCTGAAGGACCCTGACTGGCATCCATTTAAAATTTCTACAATCCAAGAGAAACATCAGGAAGCTATAGACGATGAAGATGAAAAGCTGAATGAACTGAGAAACGAGATGGGCGAAGAAGTTTACAAAGCTGTGGTGGCAGCATTGAAAGAGATAAATGAATATAATCCAAGTGGGCGGTACATAACCTCGGAATTATGGAATTACGCAGAGGGAAAGAGAGCGACTTTGCAAGAAGGAGAATCATCACACATTGTTTTCTCGAAGGGAATCGTGCAGTTGAACATATTTAGGAAATACATCATATATTTGGCTTCACTTGATACTTCAAGCTTCTGTGGAGGTCTTTCTATCGTCACTGCTTTCATAACCACAAGCTTTGTGCTTATGCTTATTCATTTAGGTGGAGTTCGAAGTTAA

Protein sequence

>Msa0816710

MAHCSIKDTGIAESQLSWWYLVSSYEELKTGKQKVKTSAESFSCPYCPERKQDYKLNELLNHATGIGRSSSEKRSAKEKGSHLALVKYLEQDLNSKDGASRPIDQVTNTISPGQTVMSHCSIKDTDISWWYVDTAYEELKNGTRNVKTSDGTFICPYCPNRKQDYLYRELLEHAFMVGRSSSDKRSARERANHLALLKYLEKDITSMPGPSKPVDKGDPDPAVCDIPRKFFRSSTKLISQGQTVTAPCSNKDTGSSDPRISWLYVDKFYQELKNGSLKVRISDEAFTCPYCPKMKKPDYVYREILEHASGVGQSSSQKRGIREKATHLALMKYLKQDIIYVPAPSKPVIEGDSSGAMIQSREENATTRCSDKDSDKSASQINLGQLKRTYEQLKKGIQNVRTSDKTFTCPYCPNNKRIKRDYVYREILEHASGVGWSISQTRTDIEKADHLALVKYLKKDLINVGGPSEPTKKGTIMLNRGVTVTGHLSEKDANNSASQINALFVNKSYAELKKGIHKVKTSEDTFSCPYCPKRKCNYRYSELLNHALGVGQSDAQRRSVLEKANHLALVKYLEKDLMTMNVERPLKPANKYLENNLMNVEQNRTKPVNENILVNSERQFVWPWTGIVVNIPTSQTEDGRCIGESGSKLRDEYRIRGFNPRRVRTLWNSWGHTGAAVVEFNKSWLGLYNALAFERAYELDCHGKKDWLSCSEQKSGLYAWVARADDYKVNNIIGEQLQKMDVKTIPEIMEQDARRFNRLVQSMHNILQVKNNKIKEMEVVCNEITLRMDIVMGEIDRLAQSHSQEMKKIQSSANQHFQSVLNGHERLKLQLESQKRELELRRIELEKREARNESERKKLDEEINKTATKNHFLQMAALEQQKAGENVLKLAADQKEGKPNLIRLSQQSGKLIMVLDYLFIQRQKEQLHAKIIQLEKQLNVKQKLELEIQQLRGKLNVMKHMEDDGEHDVLDMMDALHIDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELITTIKEMPSCADIRVKRMGELDFRPFLEAMKKKYNEDVAEDRASELCSLWEEYLKDPDWHPFKISTIQEKHQEAIDDEDEKLNELRNEMGEEVYKAVVAALKEINEYNPSGRYITSELWNYAEGKRATLQEGESSHIVFSKGIVQLNIFRKYIIYLASLDTSSFCGGLSIVTAFITTSFVLMLIHLGGVRS*