AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509610 MtrunA17_Chr3g0114681 94.771 459 20 1 1 455 1 459 0.0 840
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509610 AT4G08310.1 47.307 427 202 9 16 437 34 442 6.04e-99 307
Msa0509610 AT1G44780.2 44.906 481 221 10 10 484 17 459 3.04e-98 304
Msa0509610 AT1G44780.1 44.699 481 223 9 10 484 17 460 6.29e-98 303

Find 113 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTGCTCGAGAAAGATTT+AGG 0.188651 3_4:+58057754 Msa0509610:CDS
TTTACTTATAAACTTCTTAA+AGG 0.192372 3_4:-58059514 None:intergenic
CAATCGGTGCTGTGTTTATT+AGG 0.197249 3_4:-58057455 None:intergenic
CCCATTGCCTTCTGCTATCT+TGG 0.207283 3_4:-58059182 None:intergenic
TCTTCTGATGCTGCTTTATC+AGG 0.212935 3_4:-58059897 None:intergenic
ACAATCTAAATTAGGTTATA+CGG 0.239398 3_4:-58062408 None:intergenic
CCCTGAAGATGAGGAGAAAA+TGG 0.258537 3_4:+58059105 Msa0509610:CDS
TTTAATAGCTTTCTTAATTA+GGG 0.269138 3_4:-58059227 None:intergenic
TAGGGTACACAGTACGATTT+CGG 0.291587 3_4:-58057436 None:intergenic
AGGGTACACAGTACGATTTC+GGG 0.302755 3_4:-58057435 None:intergenic
TAGAAATCAAAGAAGTAAAT+AGG 0.302925 3_4:+58061335 Msa0509610:intron
TCCACTGGAATCTTGGGCTT+TGG 0.303298 3_4:-58061457 None:intergenic
GGGTAGTCTTCGCCGATTAT+TGG 0.304072 3_4:+58059455 Msa0509610:CDS
ACTAGTTTCCACTGGAATCT+TGG 0.310141 3_4:-58061464 None:intergenic
TCTGAGGAGGACGGGGAAAA+AGG 0.327743 3_4:+58059019 Msa0509610:CDS
CTAGTTTCCACTGGAATCTT+GGG 0.332663 3_4:-58061463 None:intergenic
GGAGTCTGCATCTTGCCTTT+TGG 0.346161 3_4:-58059813 None:intergenic
CGGACAACTAATTAAAGAAT+TGG 0.355478 3_4:+58060432 Msa0509610:CDS
ATGGAAGATTCTCCGGTATT+AGG 0.360072 3_4:+58059124 Msa0509610:CDS
TTAGCACTTTCTGCAGGTTC+CGG 0.360550 3_4:-58059666 None:intergenic
TTACTTATAAACTTCTTAAA+GGG 0.364968 3_4:-58059513 None:intergenic
ATTAATGTCTTCTGAAGTTC+CGG 0.373428 3_4:+58059647 Msa0509610:CDS
TAAGATCTTCCTCCAATAAT+CGG 0.374296 3_4:-58059467 None:intergenic
TTCTTAATTAGGGTCTCATT+TGG 0.378832 3_4:-58059217 None:intergenic
GGAATCTTGGGCTTTGGTGG+TGG 0.379600 3_4:-58061451 None:intergenic
ATCTTGGGCTTTGGTGGTGG+AGG 0.389017 3_4:-58061448 None:intergenic
CAATCTACCCAGCAAGAAAA+AGG 0.390333 3_4:+58059869 Msa0509610:CDS
AATCGGTGCTGTGTTTATTA+GGG 0.395344 3_4:-58057454 None:intergenic
TTGTGTCAAGTACACGTAGA+AGG 0.396234 3_4:+58061404 Msa0509610:CDS
GATTGCTCGAGAAAGATTTA+GGG 0.400346 3_4:+58057755 Msa0509610:CDS
ACTGGAATCTTGGGCTTTGG+TGG 0.401139 3_4:-58061454 None:intergenic
TGATACTAAAGCAACTAAAA+AGG 0.402536 3_4:+58059710 Msa0509610:CDS
AGGTCTGCTTAAAGAACAAA+AGG 0.410447 3_4:+58059144 Msa0509610:CDS
GTCCTCCTCAGACGTCTTTG+TGG 0.425698 3_4:-58059008 None:intergenic
TGATTTCAGAAATGTAACTT+TGG 0.426248 3_4:+58059434 Msa0509610:intron
GTTGTCATTATCACTACCTT+TGG 0.428731 3_4:-58061497 None:intergenic
GATTTCAGAAATGTAACTTT+GGG 0.430263 3_4:+58059435 Msa0509610:intron
TGGAGTGGAGTTTAGCAGTT+GGG 0.437213 3_4:+58057385 Msa0509610:five_prime_UTR
TTATTTCTGCCACAGTGCTT+AGG 0.445202 3_4:+58058962 Msa0509610:intron
ATAAATAAATATCGAAGTGT+TGG 0.461778 3_4:+58057360 None:intergenic
GAGGATAGCAGTGATGAGGA+TGG 0.464877 3_4:+58061577 Msa0509610:CDS
AGCAGGTCCCTGAAAACAAA+CGG 0.472188 3_4:+58060407 Msa0509610:CDS
CGTTTACTGTACACAGGAGT+TGG 0.472645 3_4:-58060234 None:intergenic
CCAAGATAGCAGAAGGCAAT+GGG 0.479554 3_4:+58059182 Msa0509610:CDS
ACATCAATCTAAAGATGAAA+AGG 0.481334 3_4:+58059078 Msa0509610:CDS
GTGGAGTGGAGTTTAGCAGT+TGG 0.490374 3_4:+58057384 Msa0509610:five_prime_UTR
TAGGAAGAAGGCACGGGCCA+AGG 0.492533 3_4:+58061354 Msa0509610:CDS
CCACAGTGCTTAGGAGAGGC+TGG 0.495291 3_4:+58058971 Msa0509610:intron
CAAAGACGTCTGAGGAGGAC+GGG 0.495426 3_4:+58059011 Msa0509610:CDS
AGTATTCTCTGCTGACGAAT+GGG 0.496613 3_4:-58059967 None:intergenic
ATCAATACCCTCAAGTTCCT+TGG 0.499914 3_4:-58061371 None:intergenic
TCTTTGCCACTAGTTTCCAC+TGG 0.500056 3_4:-58061472 None:intergenic
CTTCATACCATCTTCTGCCA+TGG 0.507544 3_4:-58057527 None:intergenic
AAATCTGTTATTAAAGCATG+TGG 0.508183 3_4:+58060270 Msa0509610:CDS
GGCAAGATGCAGACTCCTGT+TGG 0.510887 3_4:+58059819 Msa0509610:CDS
AGATGAAGAAGATGAAGAAG+AGG 0.513270 3_4:+58061555 Msa0509610:CDS
CAATCTAAATTAGGTTATAC+GGG 0.517258 3_4:-58062407 None:intergenic
CAAAGAAGTAAATAGGAAGA+AGG 0.517613 3_4:+58061342 Msa0509610:CDS
GGAGAAAATGGAAGATTCTC+CGG 0.519838 3_4:+58059117 Msa0509610:CDS
GTGAGAAACGCGAGAGCGCA+TGG 0.525813 3_4:-58057596 None:intergenic
GTCTTCAAATCCATCTGAGA+AGG 0.532832 3_4:+58060480 Msa0509610:CDS
GAGAGTGAAGAATTTAATGC+GGG 0.538623 3_4:+58061604 Msa0509610:CDS
ACCAAGATAGCAGAAGGCAA+TGG 0.540066 3_4:+58059181 Msa0509610:CDS
GGTCTGCTTAAAGAACAAAA+GGG 0.541386 3_4:+58059145 Msa0509610:CDS
GATAATGACAACGATGATGA+AGG 0.542203 3_4:+58061508 Msa0509610:CDS
TAGTATTCTCTGCTGACGAA+TGG 0.542456 3_4:-58059968 None:intergenic
GCAGGTCCCTGAAAACAAAC+GGG 0.543917 3_4:+58060408 Msa0509610:CDS
TAGTCTTCGCCGATTATTGG+AGG 0.546979 3_4:+58059458 Msa0509610:CDS
ATCGAAGTGTTGGAGTGGAG+TGG 0.548192 3_4:+58057370 None:intergenic
AGAGGAGGATAGCAGTGATG+AGG 0.550650 3_4:+58061573 Msa0509610:CDS
GGCACGGGCCAAGGAACTTG+AGG 0.552578 3_4:+58061363 Msa0509610:CDS
TCTTTAAGCAGACCTAATAC+CGG 0.555361 3_4:-58059136 None:intergenic
AGAGAGACCATGGCAGAAGA+TGG 0.563600 3_4:+58057520 Msa0509610:exon
TGAAGAAGATGAAGAAGAGG+AGG 0.566614 3_4:+58061558 Msa0509610:CDS
TTCAGATGAAGAGAGTGAAG+AGG 0.569278 3_4:+58059758 Msa0509610:CDS
ACAAGAGACTGAAGGACAGA+AGG 0.569598 3_4:+58059051 Msa0509610:CDS
AGTAAATAGGAAGAAGGCAC+GGG 0.570160 3_4:+58061348 Msa0509610:CDS
TGTGTCAAGTACACGTAGAA+GGG 0.572728 3_4:+58061405 Msa0509610:CDS
ACAAAGACGTCTGAGGAGGA+CGG 0.573683 3_4:+58059010 Msa0509610:CDS
AAGTAAATAGGAAGAAGGCA+CGG 0.576297 3_4:+58061347 Msa0509610:CDS
GCACGGGCCAAGGAACTTGA+GGG 0.580652 3_4:+58061364 Msa0509610:CDS
TCTTCAAATCCATCTGAGAA+GGG 0.588082 3_4:+58060481 Msa0509610:CDS
AAAGGATCTCCCTGAAGATG+AGG 0.591029 3_4:+58059096 Msa0509610:CDS
TAAATATCGAAGTGTTGGAG+TGG 0.593688 3_4:+58057365 None:intergenic
AGAGACTGAAGGACAGAAGG+AGG 0.595213 3_4:+58059054 Msa0509610:CDS
GAAGAAATACTATCTAGAGA+AGG 0.598424 3_4:+58060454 Msa0509610:CDS
AGAAAGAAACAGAGAGACCA+TGG 0.600219 3_4:+58057510 Msa0509610:exon
CAAGGAACCAAGATAGCAGA+AGG 0.602593 3_4:+58059175 Msa0509610:CDS
GTCTGCTTAAAGAACAAAAG+GGG 0.608849 3_4:+58059146 Msa0509610:CDS
TATAAGTAAAGAGCTTGATG+AGG 0.612914 3_4:+58059527 Msa0509610:CDS
TGAGAGTGAAGAATTTAATG+CGG 0.614155 3_4:+58061603 Msa0509610:CDS
AAAGACGTCTGAGGAGGACG+GGG 0.615894 3_4:+58059012 Msa0509610:CDS
TTATTAAAGCATGTGGGATG+AGG 0.618988 3_4:+58060277 Msa0509610:CDS
GTCCCTGAAAACAAACGGGA+CGG 0.623725 3_4:+58060412 Msa0509610:CDS
CATACTCTGCATTAGCCTTG+AGG 0.627628 3_4:-58059264 None:intergenic
TATCAAACAATCTTTAGACA+AGG 0.630540 3_4:+58057813 Msa0509610:CDS
TCTGCCACAGTGCTTAGGAG+AGG 0.635941 3_4:+58058967 Msa0509610:intron
AATAGTGATGCAGAAGACGA+TGG 0.643756 3_4:+58059921 Msa0509610:CDS
TCCTGTGTACAGTAAACGTG+TGG 0.644428 3_4:+58060239 Msa0509610:CDS
AAGATTCCAGTGGAAACTAG+TGG 0.653175 3_4:+58061466 Msa0509610:CDS
ACTAGTGGCAAAGATACCAA+AGG 0.657324 3_4:+58061481 Msa0509610:CDS
TCTGCTTAAAGAACAAAAGG+GGG 0.658439 3_4:+58059147 Msa0509610:CDS
TGATGCCACAAAGACGTCTG+AGG 0.660915 3_4:+58059003 Msa0509610:CDS
ACCAAAGCCCAAGATTCCAG+TGG 0.665045 3_4:+58061456 Msa0509610:CDS
GAAAGTACACAAGAGACTGA+AGG 0.670007 3_4:+58059043 Msa0509610:CDS
TGCCACAAAGACGTCTGAGG+AGG 0.671550 3_4:+58059006 Msa0509610:CDS
TCCACACGTTTACTGTACAC+AGG 0.676303 3_4:-58060240 None:intergenic
AATCTGTTATTAAAGCATGT+GGG 0.677116 3_4:+58060271 Msa0509610:CDS
GTCAGCAGAGAATACTACCA+AGG 0.702422 3_4:+58059974 Msa0509610:CDS
AGGCAAAGAAAATGACGAGG+AGG 0.708511 3_4:+58061528 Msa0509610:CDS
CTGCTTAAAGAACAAAAGGG+GGG 0.713202 3_4:+58059148 Msa0509610:CDS
TGAAGGCAAAGAAAATGACG+AGG 0.732415 3_4:+58061525 Msa0509610:CDS
AGAAACGCGAGAGCGCATGG+CGG 0.788364 3_4:-58057593 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTATTTCATTATATA+AGG - chr3_4:58060094-58060113 None:intergenic 10.0%
!!! ATTACTGAATTTTTTTTATT+AGG + chr3_4:58061918-58061937 Msa0509610:intron 10.0%
!!! ATTTATTTTTACTTGTCAAT+CGG - chr3_4:58057474-58057493 None:intergenic 15.0%
!! AAACAATATAACTTCAAATT+TGG - chr3_4:58058380-58058399 None:intergenic 15.0%
!! AAATCCAAATAAAAGAATAA+AGG - chr3_4:58058552-58058571 None:intergenic 15.0%
!!! TTTATTTGGATTTTGTTTTA+TGG + chr3_4:58058559-58058578 Msa0509610:intron 15.0%
!! TTTAATAGCTTTCTTAATTA+GGG - chr3_4:58059230-58059249 None:intergenic 15.0%
!!! TTTTAATAGCTTTCTTAATT+AGG - chr3_4:58059231-58059250 None:intergenic 15.0%
!! ATTAATATCAGCATATTATT+TGG + chr3_4:58059370-58059389 Msa0509610:intron 15.0%
!! TTACTTATAAACTTCTTAAA+GGG - chr3_4:58059516-58059535 None:intergenic 15.0%
!! TTTACTTATAAACTTCTTAA+AGG - chr3_4:58059517-58059536 None:intergenic 15.0%
!! GTTAAATGTATTAAATATGT+TGG + chr3_4:58060146-58060165 Msa0509610:intron 15.0%
!!! TTGACTTTTTTATAAATAAC+GGG - chr3_4:58060388-58060407 None:intergenic 15.0%
!!! CTTGACTTTTTTATAAATAA+CGG - chr3_4:58060389-58060408 None:intergenic 15.0%
!!! TGAAAATCAAAAATCAATTT+TGG + chr3_4:58060848-58060867 Msa0509610:intron 15.0%
!! TCTAAGAAAATAAGAAAAAA+GGG - chr3_4:58061319-58061338 None:intergenic 15.0%
!!! TTCTAAGAAAATAAGAAAAA+AGG - chr3_4:58061320-58061339 None:intergenic 15.0%
!!! AGTCTATTTAAAATATTTCA+AGG + chr3_4:58061629-58061648 Msa0509610:intron 15.0%
!! AAAAATAGCTTATACATAAG+TGG - chr3_4:58057932-58057951 None:intergenic 20.0%
!!! TTTTTTAATTCAGATTGCAA+GGG - chr3_4:58058211-58058230 None:intergenic 20.0%
!!! TTTTTTTAATTCAGATTGCA+AGG - chr3_4:58058212-58058231 None:intergenic 20.0%
!!! TATGCTTTTACTTCATTTTA+TGG + chr3_4:58058731-58058750 Msa0509610:intron 20.0%
!! ATACATTTATACTTGACATA+TGG - chr3_4:58058832-58058851 None:intergenic 20.0%
!!! TTTTCTAATTATTCGTTGTT+CGG + chr3_4:58059295-58059314 Msa0509610:intron 20.0%
!!! TAAACTTGATAAATTTTCTC+TGG + chr3_4:58059488-58059507 Msa0509610:CDS 20.0%
!!! TTTGGAACACTTTTTTTTTT+AGG - chr3_4:58059798-58059817 None:intergenic 20.0%
!!! AAAAAAAAAAGTGTTCCAAA+AGG + chr3_4:58059798-58059817 Msa0509610:CDS 20.0%
!! GAATAATTTAGTAATAACCT+TGG - chr3_4:58059994-58060013 None:intergenic 20.0%
!! TATTTCATTATATAAGGAGT+TGG - chr3_4:58060088-58060107 None:intergenic 20.0%
!! TATTTATAAAAAAGTCAAGC+AGG + chr3_4:58060390-58060409 Msa0509610:CDS 20.0%
!! AATTTACAGTAAAGTACAAA+AGG - chr3_4:58060800-58060819 None:intergenic 20.0%
!! AATTTCCAATAATAGATGAT+AGG - chr3_4:58060826-58060845 None:intergenic 20.0%
!! ATGTATTGAAAAACAAAAAC+TGG + chr3_4:58060987-58061006 Msa0509610:intron 20.0%
!! AATCCAAATTTGCAAATAAA+AGG + chr3_4:58061123-58061142 Msa0509610:intron 20.0%
!! ATCCAAATTTGCAAATAAAA+GGG + chr3_4:58061124-58061143 Msa0509610:intron 20.0%
!! TAGAAATCAAAGAAGTAAAT+AGG + chr3_4:58061335-58061354 Msa0509610:intron 20.0%
!! TCATAAATCATAATAGATTC+TGG + chr3_4:58061681-58061700 Msa0509610:intron 20.0%
! TATCAAACAATCTTTAGACA+AGG + chr3_4:58057813-58057832 Msa0509610:CDS 25.0%
!!! AAGTTATAAGCTGTTTTCAT+AGG + chr3_4:58057991-58058010 Msa0509610:intron 25.0%
!!! AGTTATAAGCTGTTTTCATA+GGG + chr3_4:58057992-58058011 Msa0509610:intron 25.0%
! GTATGAAATGACATAAAAAG+AGG - chr3_4:58058255-58058274 None:intergenic 25.0%
! TAAAAGAATAAAGGTCTGTT+TGG - chr3_4:58058543-58058562 None:intergenic 25.0%
!! CAGACCTTTATTCTTTTATT+TGG + chr3_4:58058545-58058564 Msa0509610:intron 25.0%
!!! TGTGGATTTTAAAAATTACC+TGG + chr3_4:58058636-58058655 Msa0509610:intron 25.0%
! ACATCAATCTAAAGATGAAA+AGG + chr3_4:58059078-58059097 Msa0509610:CDS 25.0%
! TGATTTCAGAAATGTAACTT+TGG + chr3_4:58059434-58059453 Msa0509610:intron 25.0%
! GATTTCAGAAATGTAACTTT+GGG + chr3_4:58059435-58059454 Msa0509610:intron 25.0%
!!! TGTATTTTTGTGCTTCTTAT+GGG - chr3_4:58059588-58059607 None:intergenic 25.0%
! CAAAGTTATGTTTAATGTGA+AGG + chr3_4:58059623-58059642 Msa0509610:intron 25.0%
!!! TTTTTAGTTGCTTTAGTATC+AGG - chr3_4:58059711-58059730 None:intergenic 25.0%
! TGATACTAAAGCAACTAAAA+AGG + chr3_4:58059710-58059729 Msa0509610:CDS 25.0%
! AAATCTGTTATTAAAGCATG+TGG + chr3_4:58060270-58060289 Msa0509610:CDS 25.0%
! AATCTGTTATTAAAGCATGT+GGG + chr3_4:58060271-58060290 Msa0509610:CDS 25.0%
!!! ACTTTTTTATAAATAACGGG+AGG - chr3_4:58060385-58060404 None:intergenic 25.0%
! AAATAATGAAGCTAACATTC+GGG - chr3_4:58060552-58060571 None:intergenic 25.0%
! CAAATAATGAAGCTAACATT+CGG - chr3_4:58060553-58060572 None:intergenic 25.0%
! TATATGCATTCCATTATCAA+AGG + chr3_4:58060589-58060608 Msa0509610:intron 25.0%
! ATATGCATTCCATTATCAAA+GGG + chr3_4:58060590-58060609 Msa0509610:intron 25.0%
! TTAGTCCTATCATCTATTAT+TGG + chr3_4:58060818-58060837 Msa0509610:intron 25.0%
! CAAAAACTGGAATATTTGAT+AGG + chr3_4:58061000-58061019 Msa0509610:intron 25.0%
! ATACAAATCTAACATCTTCT+GGG - chr3_4:58061076-58061095 None:intergenic 25.0%
! TATACAAATCTAACATCTTC+TGG - chr3_4:58061077-58061096 None:intergenic 25.0%
! TTTCAAATGACCCAAAAAAA+GGG - chr3_4:58061105-58061124 None:intergenic 25.0%
! ATTTCAAATGACCCAAAAAA+AGG - chr3_4:58061106-58061125 None:intergenic 25.0%
! TCCAAATTTGCAAATAAAAG+GGG + chr3_4:58061125-58061144 Msa0509610:intron 25.0%
! ATACAAATCTAACATCTTCT+GGG - chr3_4:58061076-58061095 None:intergenic 25.0%
! TATACAAATCTAACATCTTC+TGG - chr3_4:58061077-58061096 None:intergenic 25.0%
! TTTCAAATGACCCAAAAAAA+GGG - chr3_4:58061105-58061124 None:intergenic 25.0%
! ATTTCAAATGACCCAAAAAA+AGG - chr3_4:58061106-58061125 None:intergenic 25.0%
AGAAGAGAAAGAAACAAACT+CGG - chr3_4:58057635-58057654 None:intergenic 30.0%
!! TAGGGTTTTTCAAAGGAAAA+AGG - chr3_4:58057849-58057868 None:intergenic 30.0%
!! TTGGAATTAGGGTTTTTCAA+AGG - chr3_4:58057856-58057875 None:intergenic 30.0%
ATAACCTTGTAAGAAAGTGA+CGG - chr3_4:58058105-58058124 None:intergenic 30.0%
AAGCTATAAGCTACTTGAAT+TGG - chr3_4:58058165-58058184 None:intergenic 30.0%
TTGGTTGAATTTGTAGTGTT+TGG - chr3_4:58058306-58058325 None:intergenic 30.0%
AAGCTATCTTGGAGAAATTA+TGG + chr3_4:58058426-58058445 Msa0509610:intron 30.0%
!! GGAAAACAGTCTAAAACTTT+TGG + chr3_4:58058491-58058510 Msa0509610:intron 30.0%
TAGCTGAAGAAACTTATTGT+TGG + chr3_4:58058695-58058714 Msa0509610:intron 30.0%
TATATGTGATGAAGAATGCT+TGG + chr3_4:58058908-58058927 Msa0509610:intron 30.0%
TTCTTAATTAGGGTCTCATT+TGG - chr3_4:58059220-58059239 None:intergenic 30.0%
AAAAAGATCTTCATACCTCA+AGG + chr3_4:58059249-58059268 Msa0509610:CDS 30.0%
TAAGATCTTCCTCCAATAAT+CGG - chr3_4:58059470-58059489 None:intergenic 30.0%
TATAAGTAAAGAGCTTGATG+AGG + chr3_4:58059527-58059546 Msa0509610:CDS 30.0%
!! GTGTATTTTTGTGCTTCTTA+TGG - chr3_4:58059589-58059608 None:intergenic 30.0%
!! ATTAATGTCTTCTGAAGTTC+CGG + chr3_4:58059647-58059666 Msa0509610:CDS 30.0%
!! TTCTGAAGTTCAAGGAAAAA+AGG - chr3_4:58060198-58060217 None:intergenic 30.0%
! GATGAGGTGATTTTCTATTT+TGG + chr3_4:58060293-58060312 Msa0509610:intron 30.0%
CGGACAACTAATTAAAGAAT+TGG + chr3_4:58060432-58060451 Msa0509610:CDS 30.0%
GAAGAAATACTATCTAGAGA+AGG + chr3_4:58060454-58060473 Msa0509610:CDS 30.0%
AATAATGAAGCTAACATTCG+GGG - chr3_4:58060551-58060570 None:intergenic 30.0%
TATGCATTCCATTATCAAAG+GGG + chr3_4:58060591-58060610 Msa0509610:intron 30.0%
GGAAAAGCTTTCAATTGTTT+GGG - chr3_4:58060667-58060686 None:intergenic 30.0%
AGGAAAAGCTTTCAATTGTT+TGG - chr3_4:58060668-58060687 None:intergenic 30.0%
TTACTGCACAAAAAAAAACC+CGG - chr3_4:58060706-58060725 None:intergenic 30.0%
! AAAGTGCCATTCTCTATTAT+TGG + chr3_4:58060904-58060923 Msa0509610:intron 30.0%
CTAACTCCAATAATAGAGAA+TGG - chr3_4:58060913-58060932 None:intergenic 30.0%
CATTCTCTATTATTGGAGTT+AGG + chr3_4:58060911-58060930 Msa0509610:intron 30.0%
ACTCCAGTATTTGCAAATAA+AGG + chr3_4:58061025-58061044 Msa0509610:intron 30.0%
CTCCAGTATTTGCAAATAAA+GGG + chr3_4:58061026-58061045 Msa0509610:intron 30.0%
TCCAGTATTTGCAAATAAAG+GGG + chr3_4:58061027-58061046 Msa0509610:intron 30.0%
TACAAATCTAACATCTTCTG+GGG - chr3_4:58061075-58061094 None:intergenic 30.0%
!!! TGTATAGTAGTCCCTTTTTT+TGG + chr3_4:58061091-58061110 Msa0509610:intron 30.0%
!!! GTATAGTAGTCCCTTTTTTT+GGG + chr3_4:58061092-58061111 Msa0509610:intron 30.0%
!! TCCCCTTTTATTTGCAAATT+TGG - chr3_4:58061129-58061148 None:intergenic 30.0%
TACAAATCTAACATCTTCTG+GGG - chr3_4:58061075-58061094 None:intergenic 30.0%
!!! TGTATAGTAGTCCCTTTTTT+TGG + chr3_4:58061091-58061110 Msa0509610:intron 30.0%
!!! GTATAGTAGTCCCTTTTTTT+GGG + chr3_4:58061092-58061111 Msa0509610:intron 30.0%
ATAAAATGAGACCATATCAG+TGG - chr3_4:58061269-58061288 None:intergenic 30.0%
CAAAGAAGTAAATAGGAAGA+AGG + chr3_4:58061342-58061361 Msa0509610:CDS 30.0%
TGAGAGTGAAGAATTTAATG+CGG + chr3_4:58061603-58061622 Msa0509610:CDS 30.0%
TCTGTTGATGTTTAATTGCT+TGG + chr3_4:58061745-58061764 Msa0509610:intron 30.0%
TGATGTTTAATTGCTTGGAT+AGG + chr3_4:58061750-58061769 Msa0509610:intron 30.0%
GATGTTTAATTGCTTGGATA+GGG + chr3_4:58061751-58061770 Msa0509610:intron 30.0%
TATCAAAATGGAGCTATACA+GGG - chr3_4:58061853-58061872 None:intergenic 30.0%
ATATCAAAATGGAGCTATAC+AGG - chr3_4:58061854-58061873 None:intergenic 30.0%
TTTATTAGGTCCATGTATTC+AGG + chr3_4:58061932-58061951 Msa0509610:intron 30.0%
TTGAGGTTGCTAATCAATTA+AGG - chr3_4:58061973-58061992 None:intergenic 30.0%
TAAATACAGAGGAAGAAATG+AGG - chr3_4:58062055-58062074 None:intergenic 30.0%
TCATTTCTTCCTCTGTATTT+AGG + chr3_4:58062054-58062073 Msa0509610:intron 30.0%
AATCTAAGTCCTAAATACAG+AGG - chr3_4:58062066-58062085 None:intergenic 30.0%
TAAATACAGAGGAAGAAATG+AGG - chr3_4:58062055-58062074 None:intergenic 30.0%
TCATTTCTTCCTCTGTATTT+AGG + chr3_4:58062054-58062073 Msa0509610:intron 30.0%
AATCTAAGTCCTAAATACAG+AGG - chr3_4:58062066-58062085 None:intergenic 30.0%
TCTTCCAAAACAAAAGATTG+AGG - chr3_4:58062204-58062223 None:intergenic 30.0%
ATCACCCATGAAAAATATGA+GGG - chr3_4:58062326-58062345 None:intergenic 30.0%
TGATGAAAGATTTCAGTTTC+AGG + chr3_4:58062342-58062361 Msa0509610:intron 30.0%
!! AATCGGTGCTGTGTTTATTA+GGG - chr3_4:58057457-58057476 None:intergenic 35.0%
AGATTGCTCGAGAAAGATTT+AGG + chr3_4:58057754-58057773 Msa0509610:CDS 35.0%
GATTGCTCGAGAAAGATTTA+GGG + chr3_4:58057755-58057774 Msa0509610:CDS 35.0%
TTATACATATGCGTTTGCGT+TGG - chr3_4:58057875-58057894 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr3_4:58058415-58058434 Msa0509610:intron 35.0%
GAATAAAGGTCTGTTTGGAT+TGG - chr3_4:58058538-58058557 None:intergenic 35.0%
!!! TGCTGAAAAGTTGGTTTTTC+TGG + chr3_4:58058604-58058623 Msa0509610:intron 35.0%
!!! TTTTTCTGGCTGTTTTTGTG+TGG + chr3_4:58058618-58058637 Msa0509610:intron 35.0%
TGTATTCAGCTTAAGTGAAG+AGG - chr3_4:58058774-58058793 None:intergenic 35.0%
! TGTTTTGTGTGACCAAACTT+TGG + chr3_4:58058803-58058822 Msa0509610:intron 35.0%
GACATATGGTAACCAAAGTT+TGG - chr3_4:58058818-58058837 None:intergenic 35.0%
CTATCATCACTAGATGAAAG+TGG - chr3_4:58058874-58058893 None:intergenic 35.0%
TCTTTAAGCAGACCTAATAC+CGG - chr3_4:58059139-58059158 None:intergenic 35.0%
AGGTCTGCTTAAAGAACAAA+AGG + chr3_4:58059144-58059163 Msa0509610:CDS 35.0%
GGTCTGCTTAAAGAACAAAA+GGG + chr3_4:58059145-58059164 Msa0509610:CDS 35.0%
GTCTGCTTAAAGAACAAAAG+GGG + chr3_4:58059146-58059165 Msa0509610:CDS 35.0%
TCTGCTTAAAGAACAAAAGG+GGG + chr3_4:58059147-58059166 Msa0509610:CDS 35.0%
! ATTTTCTTAGCACTTTCTGC+AGG - chr3_4:58059675-58059694 None:intergenic 35.0%
!! TCATCTCCTTTACGCTTTTT+GGG - chr3_4:58059846-58059865 None:intergenic 35.0%
!! CTTGTTTCTTCTGAAGTTCA+AGG - chr3_4:58060206-58060225 None:intergenic 35.0%
TTATTAAAGCATGTGGGATG+AGG + chr3_4:58060277-58060296 Msa0509610:CDS 35.0%
CAACAAAGAACTAGGAACAT+AGG - chr3_4:58060322-58060341 None:intergenic 35.0%
! ATGTTCCTAGTTCTTTGTTG+AGG + chr3_4:58060322-58060341 Msa0509610:intron 35.0%
ATCATCCTCAACAAAGAACT+AGG - chr3_4:58060330-58060349 None:intergenic 35.0%
TCTTCAAATCCATCTGAGAA+GGG + chr3_4:58060481-58060500 Msa0509610:CDS 35.0%
AAAAAAAACCCGGATCAAAC+TGG - chr3_4:58060696-58060715 None:intergenic 35.0%
! TAGAGAATGGCACTTTTACA+TGG - chr3_4:58060900-58060919 None:intergenic 35.0%
TAAGTAGTCTCAGACAAACA+TGG + chr3_4:58060945-58060964 Msa0509610:intron 35.0%
! TCCCCTTTATTTGCAAATAC+TGG - chr3_4:58061031-58061050 None:intergenic 35.0%
CAACTTAATGCAGCAAACAT+TGG - chr3_4:58061227-58061246 None:intergenic 35.0%
AAGTAAATAGGAAGAAGGCA+CGG + chr3_4:58061347-58061366 Msa0509610:CDS 35.0%
GTTGTCATTATCACTACCTT+TGG - chr3_4:58061500-58061519 None:intergenic 35.0%
GATAATGACAACGATGATGA+AGG + chr3_4:58061508-58061527 Msa0509610:CDS 35.0%
AGATGAAGAAGATGAAGAAG+AGG + chr3_4:58061555-58061574 Msa0509610:CDS 35.0%
GAGAGTGAAGAATTTAATGC+GGG + chr3_4:58061604-58061623 Msa0509610:CDS 35.0%
AGCTCAAAGATATAGAACGT+GGG - chr3_4:58061828-58061847 None:intergenic 35.0%
AAGCTCAAAGATATAGAACG+TGG - chr3_4:58061829-58061848 None:intergenic 35.0%
CAATCTAAGTCCTGAATACA+TGG - chr3_4:58061945-58061964 None:intergenic 35.0%
GAGGTGTATCTATATGTACT+TGG - chr3_4:58062036-58062055 None:intergenic 35.0%
GAGGTGTATCTATATGTACT+TGG - chr3_4:58062036-58062055 None:intergenic 35.0%
!! GCAACCTCAATCTTTTGTTT+TGG + chr3_4:58062197-58062216 Msa0509610:intron 35.0%
CAGCACATTTAAAGAATCTC+TGG + chr3_4:58062277-58062296 Msa0509610:intron 35.0%
TCACCCATGAAAAATATGAG+GGG - chr3_4:58062325-58062344 None:intergenic 35.0%
CATCACCCATGAAAAATATG+AGG - chr3_4:58062327-58062346 None:intergenic 35.0%
TAGGGTACACAGTACGATTT+CGG - chr3_4:58057439-58057458 None:intergenic 40.0%
!! CAATCGGTGCTGTGTTTATT+AGG - chr3_4:58057458-58057477 None:intergenic 40.0%
AGAAAGAAACAGAGAGACCA+TGG + chr3_4:58057510-58057529 Msa0509610:exon 40.0%
! AGGGTTTGACGAGTTTTCTT+TGG + chr3_4:58057774-58057793 Msa0509610:CDS 40.0%
ATGCGTTTGCGTTGGAATTA+GGG - chr3_4:58057867-58057886 None:intergenic 40.0%
TATGCGTTTGCGTTGGAATT+AGG - chr3_4:58057868-58057887 None:intergenic 40.0%
! CTGTTTTCATAGGGTCTGTT+TGG + chr3_4:58058001-58058020 Msa0509610:intron 40.0%
! CTAACCGTCACTTTCTTACA+AGG + chr3_4:58058098-58058117 Msa0509610:intron 40.0%
!! CCTATAGCGGATAAGATAGT+TGG - chr3_4:58058325-58058344 None:intergenic 40.0%
CCAACTATCTTATCCGCTAT+AGG + chr3_4:58058322-58058341 Msa0509610:intron 40.0%
!! TGAACGAAGTCGCTGTTTTA+TGG + chr3_4:58058470-58058489 Msa0509610:intron 40.0%
TTCTGCTGTTGCTGAAAAGT+TGG + chr3_4:58058595-58058614 Msa0509610:intron 40.0%
! TTACCTGGCTTGTCAAATAC+CGG + chr3_4:58058651-58058670 Msa0509610:intron 40.0%
!! TTATTTCTGCCACAGTGCTT+AGG + chr3_4:58058962-58058981 Msa0509610:intron 40.0%
! GAAAGTACACAAGAGACTGA+AGG + chr3_4:58059043-58059062 Msa0509610:CDS 40.0%
! CCATTTTCTCCTCATCTTCA+GGG - chr3_4:58059108-58059127 None:intergenic 40.0%
! TCCATTTTCTCCTCATCTTC+AGG - chr3_4:58059109-58059128 None:intergenic 40.0%
GGAGAAAATGGAAGATTCTC+CGG + chr3_4:58059117-58059136 Msa0509610:CDS 40.0%
ATGGAAGATTCTCCGGTATT+AGG + chr3_4:58059124-58059143 Msa0509610:CDS 40.0%
CTGCTTAAAGAACAAAAGGG+GGG + chr3_4:58059148-58059167 Msa0509610:CDS 40.0%
TTCAGATGAAGAGAGTGAAG+AGG + chr3_4:58059758-58059777 Msa0509610:CDS 40.0%
! GTCATCTCCTTTACGCTTTT+TGG - chr3_4:58059847-58059866 None:intergenic 40.0%
! CTTTTTCTTGCTGGGTAGAT+TGG - chr3_4:58059871-58059890 None:intergenic 40.0%
CAATCTACCCAGCAAGAAAA+AGG + chr3_4:58059869-58059888 Msa0509610:CDS 40.0%
!! TCTTCTGATGCTGCTTTATC+AGG - chr3_4:58059900-58059919 None:intergenic 40.0%
AATAGTGATGCAGAAGACGA+TGG + chr3_4:58059921-58059940 Msa0509610:CDS 40.0%
AGTATTCTCTGCTGACGAAT+GGG - chr3_4:58059970-58059989 None:intergenic 40.0%
TAGTATTCTCTGCTGACGAA+TGG - chr3_4:58059971-58059990 None:intergenic 40.0%
GTCTTCAAATCCATCTGAGA+AGG + chr3_4:58060480-58060499 Msa0509610:CDS 40.0%
AAAAACTCACCCTTCTCAGA+TGG - chr3_4:58060493-58060512 None:intergenic 40.0%
TCCATTATCAAAGGGGATCT+TGG + chr3_4:58060598-58060617 Msa0509610:intron 40.0%
TCCAAGATCCCCTTTGATAA+TGG - chr3_4:58060602-58060621 None:intergenic 40.0%
ATTATCAAAGGGGATCTTGG+AGG + chr3_4:58060601-58060620 Msa0509610:intron 40.0%
GGGTTGTGTGAGAGATAATT+GGG - chr3_4:58060647-58060666 None:intergenic 40.0%
TGGGTTGTGTGAGAGATAAT+TGG - chr3_4:58060648-58060667 None:intergenic 40.0%
! TCCTGTTTTCCAGTTTGATC+CGG + chr3_4:58060684-58060703 Msa0509610:intron 40.0%
! AGTAAATAGGAAGAAGGCAC+GGG + chr3_4:58061348-58061367 Msa0509610:CDS 40.0%
ATCAATACCCTCAAGTTCCT+TGG - chr3_4:58061374-58061393 None:intergenic 40.0%
TTGTGTCAAGTACACGTAGA+AGG + chr3_4:58061404-58061423 Msa0509610:CDS 40.0%
TGTGTCAAGTACACGTAGAA+GGG + chr3_4:58061405-58061424 Msa0509610:CDS 40.0%
!!! AAGGGCAACGATTAGTTTTG+CGG + chr3_4:58061423-58061442 Msa0509610:CDS 40.0%
CTAGTTTCCACTGGAATCTT+GGG - chr3_4:58061466-58061485 None:intergenic 40.0%
! ACTAGTTTCCACTGGAATCT+TGG - chr3_4:58061467-58061486 None:intergenic 40.0%
AAGATTCCAGTGGAAACTAG+TGG + chr3_4:58061466-58061485 Msa0509610:CDS 40.0%
ACTAGTGGCAAAGATACCAA+AGG + chr3_4:58061481-58061500 Msa0509610:CDS 40.0%
TGAAGGCAAAGAAAATGACG+AGG + chr3_4:58061525-58061544 Msa0509610:CDS 40.0%
TGAAGAAGATGAAGAAGAGG+AGG + chr3_4:58061558-58061577 Msa0509610:CDS 40.0%
! CTGCACTGCTTTCATTTTGT+TGG + chr3_4:58061654-58061673 Msa0509610:intron 40.0%
! TTCTCTAGTCCTTTTTGCAG+TGG + chr3_4:58061714-58061733 Msa0509610:intron 40.0%
ACTGCTTAACCACTGCAAAA+AGG - chr3_4:58061726-58061745 None:intergenic 40.0%
CTTGGATAGGGTAAGCAATA+TGG + chr3_4:58061763-58061782 Msa0509610:intron 40.0%
GGGTAAGCAATATGGATAGT+TGG + chr3_4:58061771-58061790 Msa0509610:intron 40.0%
! ACCCCCCTCATATTTTTCAT+GGG + chr3_4:58062319-58062338 Msa0509610:intron 40.0%
ACCCATGAAAAATATGAGGG+GGG - chr3_4:58062323-58062342 None:intergenic 40.0%
CACCCATGAAAAATATGAGG+GGG - chr3_4:58062324-58062343 None:intergenic 40.0%
TGGAGTGGAGTTTAGCAGTT+GGG + chr3_4:58057385-58057404 Msa0509610:five_prime_UTR 45.0%
AGGGTACACAGTACGATTTC+GGG - chr3_4:58057438-58057457 None:intergenic 45.0%
CTTCATACCATCTTCTGCCA+TGG - chr3_4:58057530-58057549 None:intergenic 45.0%
! GCAGATAAGCTAGCCTATAG+CGG - chr3_4:58058338-58058357 None:intergenic 45.0%
TTTCCGGTATTTGACAAGCC+AGG - chr3_4:58058657-58058676 None:intergenic 45.0%
GGCTTGTCAAATACCGGAAA+TGG + chr3_4:58058657-58058676 Msa0509610:intron 45.0%
TGTCAAATACCGGAAATGGC+AGG + chr3_4:58058661-58058680 Msa0509610:intron 45.0%
ACAAGAGACTGAAGGACAGA+AGG + chr3_4:58059051-58059070 Msa0509610:CDS 45.0%
AAAGGATCTCCCTGAAGATG+AGG + chr3_4:58059096-58059115 Msa0509610:CDS 45.0%
CCCTGAAGATGAGGAGAAAA+TGG + chr3_4:58059105-58059124 Msa0509610:CDS 45.0%
GAACAAAAGGGGGGTAAACA+AGG + chr3_4:58059157-58059176 Msa0509610:CDS 45.0%
CAAGGAACCAAGATAGCAGA+AGG + chr3_4:58059175-58059194 Msa0509610:CDS 45.0%
ACCAAGATAGCAGAAGGCAA+TGG + chr3_4:58059181-58059200 Msa0509610:CDS 45.0%
CCAAGATAGCAGAAGGCAAT+GGG + chr3_4:58059182-58059201 Msa0509610:CDS 45.0%
!! CATACTCTGCATTAGCCTTG+AGG - chr3_4:58059267-58059286 None:intergenic 45.0%
! TAGTCTTCGCCGATTATTGG+AGG + chr3_4:58059458-58059477 Msa0509610:CDS 45.0%
TTAGCACTTTCTGCAGGTTC+CGG - chr3_4:58059669-58059688 None:intergenic 45.0%
!!! TTACGCTTTTTGGGTCCAAC+AGG - chr3_4:58059837-58059856 None:intergenic 45.0%
! GTTGGACCCAAAAAGCGTAA+AGG + chr3_4:58059837-58059856 Msa0509610:CDS 45.0%
! GGCTTGACCTTTTTCTTGCT+GGG - chr3_4:58059879-58059898 None:intergenic 45.0%
! AGGCTTGACCTTTTTCTTGC+TGG - chr3_4:58059880-58059899 None:intergenic 45.0%
GTCAGCAGAGAATACTACCA+AGG + chr3_4:58059974-58059993 Msa0509610:CDS 45.0%
CGTTTACTGTACACAGGAGT+TGG - chr3_4:58060237-58060256 None:intergenic 45.0%
TCCTGTGTACAGTAAACGTG+TGG + chr3_4:58060239-58060258 Msa0509610:CDS 45.0%
TCCACACGTTTACTGTACAC+AGG - chr3_4:58060243-58060262 None:intergenic 45.0%
AGCAGGTCCCTGAAAACAAA+CGG + chr3_4:58060407-58060426 Msa0509610:CDS 45.0%
! CCTGTTTTCCAGTTTGATCC+GGG + chr3_4:58060685-58060704 Msa0509610:intron 45.0%
TGATGCTACAGCCACTGATA+TGG + chr3_4:58061255-58061274 Msa0509610:intron 45.0%
! TCTTTGCCACTAGTTTCCAC+TGG - chr3_4:58061475-58061494 None:intergenic 45.0%
AGGCAAAGAAAATGACGAGG+AGG + chr3_4:58061528-58061547 Msa0509610:CDS 45.0%
TGTGCGTGTTCAGCATATTG+AGG - chr3_4:58061990-58062009 None:intergenic 45.0%
! GACCCCCCTCATATTTTTCA+TGG + chr3_4:58062318-58062337 Msa0509610:intron 45.0%
!!! TTTTATCTTTATATTTTTAT+TGG + chr3_4:58061283-58061302 Msa0509610:intron 5.0%
GTGGAGTGGAGTTTAGCAGT+TGG + chr3_4:58057384-58057403 Msa0509610:five_prime_UTR 50.0%
AGAGAGACCATGGCAGAAGA+TGG + chr3_4:58057520-58057539 Msa0509610:exon 50.0%
ATACCGGAAATGGCAGGTCA+TGG + chr3_4:58058667-58058686 Msa0509610:intron 50.0%
TACCGGAAATGGCAGGTCAT+GGG + chr3_4:58058668-58058687 Msa0509610:intron 50.0%
TGATGCCACAAAGACGTCTG+AGG + chr3_4:58059003-58059022 Msa0509610:CDS 50.0%
ACAAAGACGTCTGAGGAGGA+CGG + chr3_4:58059010-58059029 Msa0509610:CDS 50.0%
AGAGACTGAAGGACAGAAGG+AGG + chr3_4:58059054-58059073 Msa0509610:CDS 50.0%
CCCATTGCCTTCTGCTATCT+TGG - chr3_4:58059185-58059204 None:intergenic 50.0%
! GGGTAGTCTTCGCCGATTAT+TGG + chr3_4:58059455-58059474 Msa0509610:CDS 50.0%
! GGAGTCTGCATCTTGCCTTT+TGG - chr3_4:58059816-58059835 None:intergenic 50.0%
GCAGGTCCCTGAAAACAAAC+GGG + chr3_4:58060408-58060427 Msa0509610:CDS 50.0%
GTCCCTGAAAACAAACGGGA+CGG + chr3_4:58060412-58060431 Msa0509610:CDS 50.0%
!! GTCCGTCCCGTTTGTTTTCA+GGG - chr3_4:58060417-58060436 None:intergenic 50.0%
!! TGTCCGTCCCGTTTGTTTTC+AGG - chr3_4:58060418-58060437 None:intergenic 50.0%
CCCGGATCAAACTGGAAAAC+AGG - chr3_4:58060688-58060707 None:intergenic 50.0%
CAAACATGGCTGCACAGAGA+TGG + chr3_4:58060959-58060978 Msa0509610:intron 50.0%
! ACTGGAATCTTGGGCTTTGG+TGG - chr3_4:58061457-58061476 None:intergenic 50.0%
ACCAAAGCCCAAGATTCCAG+TGG + chr3_4:58061456-58061475 Msa0509610:CDS 50.0%
TCCACTGGAATCTTGGGCTT+TGG - chr3_4:58061460-58061479 None:intergenic 50.0%
AGAGGAGGATAGCAGTGATG+AGG + chr3_4:58061573-58061592 Msa0509610:CDS 50.0%
GAGGATAGCAGTGATGAGGA+TGG + chr3_4:58061577-58061596 Msa0509610:CDS 50.0%
! TGCCCATGACCTGCCATTTC+CGG - chr3_4:58058673-58058692 None:intergenic 55.0%
TCTGCCACAGTGCTTAGGAG+AGG + chr3_4:58058967-58058986 Msa0509610:intron 55.0%
TGCCACAAAGACGTCTGAGG+AGG + chr3_4:58059006-58059025 Msa0509610:CDS 55.0%
GTCCTCCTCAGACGTCTTTG+TGG - chr3_4:58059011-58059030 None:intergenic 55.0%
CAAAGACGTCTGAGGAGGAC+GGG + chr3_4:58059011-58059030 Msa0509610:CDS 55.0%
AAAGACGTCTGAGGAGGACG+GGG + chr3_4:58059012-58059031 Msa0509610:CDS 55.0%
TCTGAGGAGGACGGGGAAAA+AGG + chr3_4:58059019-58059038 Msa0509610:CDS 55.0%
GGCAAGATGCAGACTCCTGT+TGG + chr3_4:58059819-58059838 Msa0509610:CDS 55.0%
!! ATCTTGGGCTTTGGTGGTGG+AGG - chr3_4:58061451-58061470 None:intergenic 55.0%
! GGAATCTTGGGCTTTGGTGG+TGG - chr3_4:58061454-58061473 None:intergenic 55.0%
! AGAAACGCGAGAGCGCATGG+CGG - chr3_4:58057596-58057615 None:intergenic 60.0%
! GTGAGAAACGCGAGAGCGCA+TGG - chr3_4:58057599-58057618 None:intergenic 60.0%
! CCAGCCTCTCCTAAGCACTG+TGG - chr3_4:58058974-58058993 None:intergenic 60.0%
CCACAGTGCTTAGGAGAGGC+TGG + chr3_4:58058971-58058990 Msa0509610:intron 60.0%
! TAGGAAGAAGGCACGGGCCA+AGG + chr3_4:58061354-58061373 Msa0509610:CDS 60.0%
GCACGGGCCAAGGAACTTGA+GGG + chr3_4:58061364-58061383 Msa0509610:CDS 60.0%
GGCACGGGCCAAGGAACTTG+AGG + chr3_4:58061363-58061382 Msa0509610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58057374 58062415 58057374 ID=Msa0509610;Name=Msa0509610
chr3_4 mRNA 58057374 58062415 58057374 ID=Msa0509610-mRNA-1;Parent=Msa0509610;Name=Msa0509610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=155|0.7|0.72|0.72|0.9|1|11|0|498
chr3_4 exon 58057374 58057635 58057374 ID=Msa0509610-mRNA-1:exon:13395;Parent=Msa0509610-mRNA-1
chr3_4 exon 58057729 58057834 58057729 ID=Msa0509610-mRNA-1:exon:13396;Parent=Msa0509610-mRNA-1
chr3_4 exon 58058977 58059281 58058977 ID=Msa0509610-mRNA-1:exon:13397;Parent=Msa0509610-mRNA-1
chr3_4 exon 58059443 58059548 58059443 ID=Msa0509610-mRNA-1:exon:13398;Parent=Msa0509610-mRNA-1
chr3_4 exon 58059645 58059995 58059645 ID=Msa0509610-mRNA-1:exon:13399;Parent=Msa0509610-mRNA-1
chr3_4 exon 58060216 58060298 58060216 ID=Msa0509610-mRNA-1:exon:13400;Parent=Msa0509610-mRNA-1
chr3_4 exon 58060378 58060502 58060378 ID=Msa0509610-mRNA-1:exon:13401;Parent=Msa0509610-mRNA-1
chr3_4 exon 58061338 58061625 58061338 ID=Msa0509610-mRNA-1:exon:13402;Parent=Msa0509610-mRNA-1
chr3_4 exon 58061940 58061945 58061940 ID=Msa0509610-mRNA-1:exon:13403;Parent=Msa0509610-mRNA-1
chr3_4 exon 58062358 58062363 58062358 ID=Msa0509610-mRNA-1:exon:13404;Parent=Msa0509610-mRNA-1
chr3_4 exon 58062402 58062415 58062402 ID=Msa0509610-mRNA-1:exon:13405;Parent=Msa0509610-mRNA-1
chr3_4 five_prime_UTR 58057374 58057528 58057374 ID=Msa0509610-mRNA-1:five_prime_utr;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58057529 58057635 58057529 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58057729 58057834 58057729 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58058977 58059281 58058977 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58059443 58059548 58059443 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58059645 58059995 58059645 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58060216 58060298 58060216 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58060378 58060502 58060378 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58061338 58061625 58061338 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58061940 58061945 58061940 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58062358 58062363 58062358 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
chr3_4 CDS 58062402 58062415 58062402 ID=Msa0509610-mRNA-1:cds;Parent=Msa0509610-mRNA-1
Gene Sequence

>Msa0509610

ATGGCAGAAGATGGTATGAAGAAGATGAATGACGATGTCGACGCAGTTCAGTCTCAGATTGAAACCGCCATGCGCTCTCGCGTTTCTCACTTCAAGCAACAAGCCGATTCTTTGACATTTGCAAGTGTTCGTAGATTGCTCGAGAAAGATTTAGGGTTTGACGAGTTTTCTTTGGATTCTCACAAAAAATTTATCAAACAATCTTTAGACAAGTGCTTAGGAGAGGCTGGTGATGACGATGATGCCACAAAGACGTCTGAGGAGGACGGGGAAAAAGGTGAAAGTACACAAGAGACTGAAGGACAGAAGGAGGAACATCAATCTAAAGATGAAAAGGATCTCCCTGAAGATGAGGAGAAAATGGAAGATTCTCCGGTATTAGGTCTGCTTAAAGAACAAAAGGGGGGTAAACAAGGAACCAAGATAGCAGAAGGCAATGGGAAAAAAATAGTTCCAAATGAGACCCTAATTAAGAAAGCTATTAAAAAAAGATCTTCATACCTCAAGGCTAATGCAGAAAATGTAACTTTGGGTAGTCTTCGCCGATTATTGGAGGAAGATCTTAAACTTGATAAATTTTCTCTGGATCCCTTTAAGAAGTTTATAAGTAAAGAGCTTGATGAGGTATTAATGTCTTCTGAAGTTCCGGAACCTGCAGAAAGTGCTAAGAAAATTGTTAAGAAGAAACCTGATACTAAAGCAACTAAAAAGGTCAGTGCTGAAGATAACTCTGATACTTCAGATGAAGAGAGTGAAGAGGAAGATGAAGTCAAACCTAAAAAAAAAAGTGTTCCAAAAGGCAAGATGCAGACTCCTGTTGGACCCAAAAAGCGTAAAGGAGATGACACCAATCTACCCAGCAAGAAAAAGGTCAAGCCTGATAAAGCAGCATCAGAAGACAATAGTGATGCAGAAGACGATGGAAAAAACTCTGAAGATGATCAGTCCCATTCGTCAGCAGAGAATACTACCAAGAAGAAACAAGTTTCAACTCCAACTCCTGTGTACAGTAAACGTGTGGAGCACTTGAAATCTGTTATTAAAGCATGTGGGATGAGTGTTCCTCCCGTTATTTATAAAAAAGTCAAGCAGGTCCCTGAAAACAAACGGGACGGACAACTAATTAAAGAATTGGAAGAAATACTATCTAGAGAAGGCTTGTCTTCAAATCCATCTGAGAAGGAAATCAAAGAAGTAAATAGGAAGAAGGCACGGGCCAAGGAACTTGAGGGTATTGATATGAGTAATATTGTGTCAAGTACACGTAGAAGGGCAACGATTAGTTTTGCGGCTCCTCCACCACCAAAGCCCAAGATTCCAGTGGAAACTAGTGGCAAAGATACCAAAGGTAGTGATAATGACAACGATGATGAAGGCAAAGAAAATGACGAGGAGGAAGAAGATGAAGAAGATGAAGAAGAGGAGGATAGCAGTGATGAGGATGGAAGTGAGAGTGAAGAATTTAATGCGGGTCCATTTTCAGTGTATCCCGTATAA

Protein sequence

>Msa0509610

MAEDGMKKMNDDVDAVQSQIETAMRSRVSHFKQQADSLTFASVRRLLEKDLGFDEFSLDSHKKFIKQSLDKCLGEAGDDDDATKTSEEDGEKGESTQETEGQKEEHQSKDEKDLPEDEEKMEDSPVLGLLKEQKGGKQGTKIAEGNGKKIVPNETLIKKAIKKRSSYLKANAENVTLGSLRRLLEEDLKLDKFSLDPFKKFISKELDEVLMSSEVPEPAESAKKIVKKKPDTKATKKVSAEDNSDTSDEESEEEDEVKPKKKSVPKGKMQTPVGPKKRKGDDTNLPSKKKVKPDKAASEDNSDAEDDGKNSEDDQSHSSAENTTKKKQVSTPTPVYSKRVEHLKSVIKACGMSVPPVIYKKVKQVPENKRDGQLIKELEEILSREGLSSNPSEKEIKEVNRKKARAKELEGIDMSNIVSSTRRRATISFAAPPPPKPKIPVETSGKDTKGSDNDNDDEGKENDEEEEDEEDEEEEDSSDEDGSESEEFNAGPFSVYPV*