Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076350 | XP_003590611.1 | 94.737 | 190 | 10 | 0 | 1 | 190 | 1 | 190 | 1.27e-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076350 | sp|Q94AX3|LTG16_ARATH | 44.937 | 158 | 75 | 4 | 27 | 182 | 22 | 169 | 2.85e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076350 | G7IDM6 | 94.737 | 190 | 10 | 0 | 1 | 190 | 1 | 190 | 6.05e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028690 | Msa0076350 | 0.844146 | 9.055330e-59 | -8.615850e-47 |
| Msa0044160 | Msa0076350 | 0.804829 | 1.790281e-49 | -8.615850e-47 |
| Msa0076350 | Msa0119240 | 0.807188 | 5.710660e-50 | -8.615850e-47 |
| Msa0076350 | Msa0127770 | 0.804985 | 1.660392e-49 | -8.615850e-47 |
| Msa0076350 | Msa0168750 | 0.846029 | 2.807049e-59 | -8.615850e-47 |
| Msa0076350 | Msa0307740 | 0.838736 | 2.408455e-57 | -8.615850e-47 |
| Msa0076350 | Msa0402530 | 0.819034 | 1.435750e-52 | -8.615850e-47 |
| Msa0076350 | Msa0612350 | 0.828319 | 9.602286e-55 | -8.615850e-47 |
| Msa0076350 | Msa0657710 | 0.813963 | 1.961341e-51 | -8.615850e-47 |
| Msa0076350 | Msa0702800 | 0.813773 | 2.160115e-51 | -8.615850e-47 |
| Msa0076350 | Msa0810330 | 0.823035 | 1.719853e-53 | -8.615850e-47 |
| Msa0076350 | Msa0828960 | 0.808558 | 2.919803e-50 | -8.615850e-47 |
| Msa0076350 | Msa0907880 | 0.812248 | 4.665511e-51 | -8.615850e-47 |
| Msa0076350 | Msa1012800 | 0.808736 | 2.675450e-50 | -8.615850e-47 |
| Msa0076350 | Msa1131270 | 0.823106 | 1.656151e-53 | -8.615850e-47 |
| Msa0076350 | Msa1203440 | 0.829366 | 5.358110e-55 | -8.615850e-47 |
| Msa0076350 | Msa1255690 | 0.826626 | 2.447005e-54 | -8.615850e-47 |
| Msa0076350 | Msa1430950 | 0.817436 | 3.300902e-52 | -8.615850e-47 |
| Msa0076350 | Msa1433360 | 0.803322 | 3.683877e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076350 | MtrunA17_Chr1g0185311 | 94.737 | 190 | 10 | 0 | 1 | 190 | 1 | 190 | 1.16e-129 | 362 |
| Msa0076350 | MtrunA17_Chr7g0260071 | 49.180 | 183 | 78 | 7 | 1 | 181 | 1 | 170 | 1.34e-36 | 126 |
| Msa0076350 | MtrunA17_Chr5g0394991 | 41.860 | 172 | 89 | 8 | 1 | 169 | 1 | 164 | 1.14e-32 | 116 |
| Msa0076350 | MtrunA17_Chr1g0205171 | 40.491 | 163 | 74 | 6 | 26 | 168 | 26 | 185 | 1.69e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076350 | AT2G48140.2 | 57.576 | 99 | 40 | 1 | 27 | 125 | 22 | 118 | 1.23e-35 | 122 |
| Msa0076350 | AT2G48140.1 | 44.937 | 158 | 75 | 4 | 27 | 182 | 22 | 169 | 2.89e-35 | 123 |
| Msa0076350 | AT1G05450.2 | 40.741 | 135 | 71 | 3 | 24 | 158 | 25 | 150 | 8.73e-28 | 103 |
| Msa0076350 | AT3G22620.1 | 40.698 | 86 | 48 | 2 | 32 | 117 | 29 | 111 | 1.01e-13 | 67.0 |
Find 44 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATATTCATATGCAATT+TGG | 0.201522 | 1_2:-52351110 | Msa0076350:three_prime_UTR |
| TTTAATCACATCAGTAAAAT+TGG | 0.205703 | 1_2:-52353528 | Msa0076350:CDS |
| TTGGCAGGTCCAGCTATATT+TGG | 0.239605 | 1_2:-52351485 | Msa0076350:intron |
| TGTTATTAAACCATTATAAT+TGG | 0.248933 | 1_2:+52353424 | None:intergenic |
| ATCTATGATGAGTACTAGTA+TGG | 0.275702 | 1_2:-52353372 | Msa0076350:CDS |
| GAAGGAAAGAACTCTATTAA+TGG | 0.297936 | 1_2:+52353301 | None:intergenic |
| GAGTGTTGAATTGCATATTT+AGG | 0.320907 | 1_2:+52351244 | None:intergenic |
| CTCAAGGGAGAAGCATTAAT+TGG | 0.340383 | 1_2:+52351440 | None:intergenic |
| CTTGGGCGACTATGCTTCAT+TGG | 0.351622 | 1_2:+52351190 | None:intergenic |
| ACAGGAAGCACCAATTATAA+TGG | 0.355204 | 1_2:-52353434 | Msa0076350:CDS |
| TACTTAGATGTCCCATTGTT+GGG | 0.393029 | 1_2:+52353582 | None:intergenic |
| CCATGTGCAAATTACATTAC+AGG | 0.394871 | 1_2:-52353452 | Msa0076350:CDS |
| TTAATGGGTGGTAGTTGAAA+TGG | 0.396089 | 1_2:+52353317 | None:intergenic |
| GAATCACAACAACTACTTGA+TGG | 0.400929 | 1_2:+52353401 | None:intergenic |
| AAGGAAAGAACTCTATTAAT+GGG | 0.415197 | 1_2:+52353302 | None:intergenic |
| TAGTCGCCCAAGAAAACTTC+AGG | 0.419211 | 1_2:-52351179 | Msa0076350:CDS |
| GGCTCTCCTTTACCAGCTCC+AGG | 0.442482 | 1_2:-52353120 | Msa0076350:intron |
| ATTGTGCATGGAATCCATTC+AGG | 0.446420 | 1_2:+52353258 | None:intergenic |
| ATACTTAGATGTCCCATTGT+TGG | 0.468497 | 1_2:+52353581 | None:intergenic |
| CCATTCAGGTTGCATGATTG+TGG | 0.485094 | 1_2:+52353272 | None:intergenic |
| ATATTTACCTTGCGGACTCA+AGG | 0.503866 | 1_2:+52351424 | None:intergenic |
| ACATTTGATCCAAATATAGC+TGG | 0.505446 | 1_2:+52351476 | None:intergenic |
| CCACAATCATGCAACCTGAA+TGG | 0.505888 | 1_2:-52353272 | Msa0076350:CDS |
| GCATTAATTGGCAGAAGAGA+CGG | 0.509604 | 1_2:+52351452 | None:intergenic |
| AGGAGAATCAGCTACCTCAA+TGG | 0.512985 | 1_2:+52351264 | None:intergenic |
| TGGATTCCATGCACAATGCA+AGG | 0.527893 | 1_2:-52353252 | Msa0076350:CDS |
| TAAGTACCTGGAGCTGGTAA+AGG | 0.529079 | 1_2:+52353114 | None:intergenic |
| ATTCTTGCAGACCCAACAAT+GGG | 0.532295 | 1_2:-52353593 | None:intergenic |
| CATTAATTGGCAGAAGAGAC+GGG | 0.534304 | 1_2:+52351453 | None:intergenic |
| GCATGATTGTGGAAGGAAGA+AGG | 0.544924 | 1_2:+52353283 | None:intergenic |
| TAATAATAAGTACCTGGAGC+TGG | 0.545527 | 1_2:+52353108 | None:intergenic |
| TCAGGTTGCATGATTGTGGA+AGG | 0.574464 | 1_2:+52353276 | None:intergenic |
| TATTTACCTTGCGGACTCAA+GGG | 0.591593 | 1_2:+52351425 | None:intergenic |
| CATTCTTGCAGACCCAACAA+TGG | 0.593953 | 1_2:-52353594 | None:intergenic |
| CGCAGTAGATGAAACCATTG+AGG | 0.601013 | 1_2:-52351278 | Msa0076350:intron |
| CCTGTAATGTAATTTGCACA+TGG | 0.606044 | 1_2:+52353452 | None:intergenic |
| TGGTAGTTGAAATGGAATGT+TGG | 0.606428 | 1_2:+52353325 | None:intergenic |
| GTGTACCCTTGCATTGTGCA+TGG | 0.619403 | 1_2:+52353246 | None:intergenic |
| GGATTCCATGCACAATGCAA+GGG | 0.619466 | 1_2:-52353251 | Msa0076350:intron |
| TGCAATTCAACACTCAGCAA+AGG | 0.626463 | 1_2:-52351236 | Msa0076350:CDS |
| GCTTCTCCCTTGAGTCCGCA+AGG | 0.628732 | 1_2:-52351431 | Msa0076350:intron |
| CTAATCATAGAAGCTGTGCA+AGG | 0.644182 | 1_2:+52353485 | None:intergenic |
| GAAAGAACTCTATTAATGGG+TGG | 0.644751 | 1_2:+52353305 | None:intergenic |
| TCTATGATGAGTACTAGTAT+GGG | 0.647243 | 1_2:-52353371 | Msa0076350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAGGAAATTAAAAT+AGG | + | chr1_2:52351490-52351509 | None:intergenic | 10.0% |
| !!! | TTATATACAAATGATTTTAA+AGG | + | chr1_2:52351503-52351522 | None:intergenic | 10.0% |
| !!! | AAATGAAACAATTTTTTTAA+AGG | + | chr1_2:52352094-52352113 | None:intergenic | 10.0% |
| !! | TGTTATTAAACCATTATAAT+TGG | + | chr1_2:52351266-52351285 | None:intergenic | 15.0% |
| !! | GTATATAAAATGTCTAATAA+AGG | - | chr1_2:52351515-52351534 | Msa0076350:intron | 15.0% |
| !! | TTTAATTAATAATAAGTACC+TGG | + | chr1_2:52351588-52351607 | None:intergenic | 15.0% |
| !!! | TTTTAAACATTTTATTTGCA+AGG | - | chr1_2:52351739-52351758 | Msa0076350:intron | 15.0% |
| !! | TATGTAATAAAAAACTTGAT+CGG | + | chr1_2:52351775-52351794 | None:intergenic | 15.0% |
| !!! | AAATTATTTTACTTTCACTT+TGG | - | chr1_2:52352012-52352031 | Msa0076350:intron | 15.0% |
| !!! | CTTTTAAAAAAAATACGTTT+TGG | + | chr1_2:52352649-52352668 | None:intergenic | 15.0% |
| !!! | ATGATCTTTAAAAATTATTC+AGG | - | chr1_2:52353140-52353159 | Msa0076350:intron | 15.0% |
| !! | TATGTAAACACAAAATTAAA+AGG | - | chr1_2:52353313-52353332 | Msa0076350:CDS | 15.0% |
| !! | ATGTAAACACAAAATTAAAA+GGG | - | chr1_2:52353314-52353333 | Msa0076350:CDS | 15.0% |
| !!! | ATTTTTTATGTCAACAAATT+GGG | + | chr1_2:52353373-52353392 | None:intergenic | 15.0% |
| !!! | TATTTTTTATGTCAACAAAT+TGG | + | chr1_2:52353374-52353393 | None:intergenic | 15.0% |
| !! | ATTTATATTCATATGCAATT+TGG | - | chr1_2:52353577-52353596 | Msa0076350:CDS | 15.0% |
| !!! | ATTTTACTGATGTGATTAAA+AGG | + | chr1_2:52351159-52351178 | None:intergenic | 20.0% |
| !! | TTTAATCACATCAGTAAAAT+TGG | - | chr1_2:52351159-52351178 | Msa0076350:exon | 20.0% |
| !! | TGTTCTCAAAAAAAAATTAG+TGG | + | chr1_2:52351848-52351867 | None:intergenic | 20.0% |
| !! | GTATCAAAATTAAACAAAAC+AGG | + | chr1_2:52352047-52352066 | None:intergenic | 20.0% |
| !!! | TTGTGGTTATATTATACTTT+TGG | + | chr1_2:52352347-52352366 | None:intergenic | 20.0% |
| !!! | TGGGTATAATTTTTTTTTTG+AGG | - | chr1_2:52352882-52352901 | Msa0076350:intron | 20.0% |
| !! | ATGTAACATTCATATATAAG+AGG | + | chr1_2:52353079-52353098 | None:intergenic | 20.0% |
| !!! | ACATCAGTAAAATTGGTTTT+TGG | - | chr1_2:52351166-52351185 | Msa0076350:CDS | 25.0% |
| ! | AAGGAAAGAACTCTATTAAT+GGG | + | chr1_2:52351388-52351407 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTAAGTAGTCCAA+TGG | - | chr1_2:52351616-52351635 | Msa0076350:intron | 25.0% |
| ! | TAATAAAAAACTTGATCGGA+TGG | + | chr1_2:52351771-52351790 | None:intergenic | 25.0% |
| !!! | AAAAAAAATTAGTGGACTCA+TGG | + | chr1_2:52351840-52351859 | None:intergenic | 25.0% |
| !!! | CTCTCATTTGAGTTTTTAAA+CGG | - | chr1_2:52351881-52351900 | Msa0076350:intron | 25.0% |
| ! | CAAACTGTAAAATGTTTGTA+AGG | + | chr1_2:52352069-52352088 | None:intergenic | 25.0% |
| !! | CTTACAAACATTTTACAGTT+TGG | - | chr1_2:52352067-52352086 | Msa0076350:intron | 25.0% |
| ! | ATTAGATACTTTGATGCTTT+AGG | + | chr1_2:52352184-52352203 | None:intergenic | 25.0% |
| !! | TGGTCTCTTAAGTTAATTTT+AGG | + | chr1_2:52352327-52352346 | None:intergenic | 25.0% |
| !! | GTATCAAGTTTAAAACTACT+AGG | + | chr1_2:52352411-52352430 | None:intergenic | 25.0% |
| !!! | TTTAATTTTCCTCTTGCTTT+TGG | + | chr1_2:52352782-52352801 | None:intergenic | 25.0% |
| !!! | TGAGTTCTGGAAATATATAA+AGG | - | chr1_2:52353108-52353127 | Msa0076350:intron | 25.0% |
| !! | TGGAAATATATAAAGGTACA+TGG | - | chr1_2:52353115-52353134 | Msa0076350:intron | 25.0% |
| ! | TAACAATGATATTTACCTTG+CGG | + | chr1_2:52353274-52353293 | None:intergenic | 25.0% |
| ! | AAACACAAAATTAAAAGGGT+TGG | - | chr1_2:52353318-52353337 | Msa0076350:CDS | 25.0% |
| ATCTATGATGAGTACTAGTA+TGG | - | chr1_2:52351315-52351334 | Msa0076350:intron | 30.0% | |
| TCTATGATGAGTACTAGTAT+GGG | - | chr1_2:52351316-52351335 | Msa0076350:intron | 30.0% | |
| GAAGGAAAGAACTCTATTAA+TGG | + | chr1_2:52351389-52351408 | None:intergenic | 30.0% | |
| GGGTACACAATTCATATATA+TGG | - | chr1_2:52351456-52351475 | Msa0076350:CDS | 30.0% | |
| TTCATGGACATTAGTACATA+GGG | + | chr1_2:52351688-52351707 | None:intergenic | 30.0% | |
| TCAACTGAACTTCATTTAGA+AGG | - | chr1_2:52351712-52351731 | Msa0076350:intron | 30.0% | |
| ! | AAAAAGTGTGTCGAAAAAGA+CGG | + | chr1_2:52351805-52351824 | None:intergenic | 30.0% |
| TGTTCAACGTTCATAACTTA+AGG | + | chr1_2:52352122-52352141 | None:intergenic | 30.0% | |
| AACCACAAATTTACTAGCTA+TGG | - | chr1_2:52352359-52352378 | Msa0076350:intron | 30.0% | |
| TTCCATAGCTAGTAAATTTG+TGG | + | chr1_2:52352364-52352383 | None:intergenic | 30.0% | |
| AAAAAGATGATAGCATGCTT+CGG | + | chr1_2:52352433-52352452 | None:intergenic | 30.0% | |
| TAAATAAGCACTCACATTTC+AGG | + | chr1_2:52352522-52352541 | None:intergenic | 30.0% | |
| !!! | ATACGTTTTGGTTTTATCAC+TGG | + | chr1_2:52352637-52352656 | None:intergenic | 30.0% |
| AAATAACTACCGTATACATG+AGG | - | chr1_2:52352741-52352760 | Msa0076350:intron | 30.0% | |
| TATACTATCCTGCAATAAAG+GGG | + | chr1_2:52352843-52352862 | None:intergenic | 30.0% | |
| GTATACTATCCTGCAATAAA+GGG | + | chr1_2:52352844-52352863 | None:intergenic | 30.0% | |
| AGTATACTATCCTGCAATAA+AGG | + | chr1_2:52352845-52352864 | None:intergenic | 30.0% | |
| ACATTTGATCCAAATATAGC+TGG | + | chr1_2:52353214-52353233 | None:intergenic | 30.0% | |
| ACAAATTGGGTGATGTATAA+TGG | + | chr1_2:52353360-52353379 | None:intergenic | 30.0% | |
| !! | GAGTGTTGAATTGCATATTT+AGG | + | chr1_2:52353446-52353465 | None:intergenic | 30.0% |
| !!! | TTCATTGGTACTAGTTTTGT+CGG | + | chr1_2:52353485-52353504 | None:intergenic | 30.0% |
| ! | TGAATTCCTGAAGTTTTCTT+GGG | + | chr1_2:52353517-52353536 | None:intergenic | 30.0% |
| ! | TTGAATTCCTGAAGTTTTCT+TGG | + | chr1_2:52353518-52353537 | None:intergenic | 30.0% |
| ! | CCTGTAATGTAATTTGCACA+TGG | + | chr1_2:52351238-52351257 | None:intergenic | 35.0% |
| CCATGTGCAAATTACATTAC+AGG | - | chr1_2:52351235-52351254 | Msa0076350:CDS | 35.0% | |
| !! | ACAGGAAGCACCAATTATAA+TGG | - | chr1_2:52351253-52351272 | Msa0076350:CDS | 35.0% |
| GAATCACAACAACTACTTGA+TGG | + | chr1_2:52351289-52351308 | None:intergenic | 35.0% | |
| TGGTAGTTGAAATGGAATGT+TGG | + | chr1_2:52351365-52351384 | None:intergenic | 35.0% | |
| ! | TTAATGGGTGGTAGTTGAAA+TGG | + | chr1_2:52351373-52351392 | None:intergenic | 35.0% |
| GAAAGAACTCTATTAATGGG+TGG | + | chr1_2:52351385-52351404 | None:intergenic | 35.0% | |
| AACTTGTATATTGCAGCTTC+TGG | - | chr1_2:52351546-52351565 | Msa0076350:intron | 35.0% | |
| TAATAATAAGTACCTGGAGC+TGG | + | chr1_2:52351582-52351601 | None:intergenic | 35.0% | |
| ACATTAGTACATAGGGATTG+AGG | + | chr1_2:52351681-52351700 | None:intergenic | 35.0% | |
| CTTCATGGACATTAGTACAT+AGG | + | chr1_2:52351689-52351708 | None:intergenic | 35.0% | |
| !! | AAGTTCAGTTGATAGCTTCA+TGG | + | chr1_2:52351704-52351723 | None:intergenic | 35.0% |
| ! | GCTATCATCTTTTTATGCCA+TGG | - | chr1_2:52352439-52352458 | Msa0076350:intron | 35.0% |
| ! | ATTTTCTTTGGCATAAGCCA+TGG | + | chr1_2:52352459-52352478 | None:intergenic | 35.0% |
| ! | GGTCAACATTGGATTTTCTT+TGG | + | chr1_2:52352471-52352490 | None:intergenic | 35.0% |
| CACAAATTCATGGTCAACAT+TGG | + | chr1_2:52352482-52352501 | None:intergenic | 35.0% | |
| !! | CGGTAGTTATTTTCACCTAT+GGG | + | chr1_2:52352733-52352752 | None:intergenic | 35.0% |
| !! | ACGGTAGTTATTTTCACCTA+TGG | + | chr1_2:52352734-52352753 | None:intergenic | 35.0% |
| ATACTATCCTGCAATAAAGG+GGG | + | chr1_2:52352842-52352861 | None:intergenic | 35.0% | |
| ATTGCAGGATAGTATACTAC+TGG | - | chr1_2:52352847-52352866 | Msa0076350:intron | 35.0% | |
| ACTACTGGATAGTATACTAC+TGG | - | chr1_2:52352862-52352881 | Msa0076350:intron | 35.0% | |
| CTACTGGATAGTATACTACT+GGG | - | chr1_2:52352863-52352882 | Msa0076350:intron | 35.0% | |
| ! | ATATCTGAGACCATCTATGA+TGG | + | chr1_2:52352976-52352995 | None:intergenic | 35.0% |
| CTAATCATAGAAGCTGTGCA+AGG | + | chr1_2:52351205-52351224 | None:intergenic | 40.0% | |
| ATTGTGCATGGAATCCATTC+AGG | + | chr1_2:52351432-52351451 | None:intergenic | 40.0% | |
| CACACTGTCTCACAAATTCA+TGG | + | chr1_2:52352492-52352511 | None:intergenic | 40.0% | |
| TAAGCACTCACATTTCAGGA+GGG | + | chr1_2:52352518-52352537 | None:intergenic | 40.0% | |
| ATAAGCACTCACATTTCAGG+AGG | + | chr1_2:52352519-52352538 | None:intergenic | 40.0% | |
| TACAACGTGCCGTATATATG+CGG | - | chr1_2:52352703-52352722 | Msa0076350:intron | 40.0% | |
| ATGGGTGTACCGCATATATA+CGG | + | chr1_2:52352715-52352734 | None:intergenic | 40.0% | |
| TATATATGCGGTACACCCAT+AGG | - | chr1_2:52352715-52352734 | Msa0076350:intron | 40.0% | |
| !!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr1_2:52352771-52352790 | None:intergenic | 40.0% |
| !!! | TTCCTCTTGCTTTTGGTGTT+AGG | + | chr1_2:52352775-52352794 | None:intergenic | 40.0% |
| !! | GACTTTTGGTTGTTTTGTGC+AGG | + | chr1_2:52352805-52352824 | None:intergenic | 40.0% |
| ! | TGCAAACAGCGAATGACTTT+TGG | + | chr1_2:52352819-52352838 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGAGGCCCATCCT+TGG | - | chr1_2:52352893-52352912 | Msa0076350:intron | 40.0% |
| !!! | TTTTTTTGAGGCCCATCCTT+GGG | - | chr1_2:52352894-52352913 | Msa0076350:intron | 40.0% |
| CCAACAAAAGCAAAGGAAAG+AGG | + | chr1_2:52353186-52353205 | None:intergenic | 40.0% | |
| !! | CCTCTTTCCTTTGCTTTTGT+TGG | - | chr1_2:52353183-52353202 | Msa0076350:intron | 40.0% |
| !! | TTTCCTTTGCTTTTGTTGGC+AGG | - | chr1_2:52353187-52353206 | Msa0076350:intron | 40.0% |
| CATTAATTGGCAGAAGAGAC+GGG | + | chr1_2:52353237-52353256 | None:intergenic | 40.0% | |
| GCATTAATTGGCAGAAGAGA+CGG | + | chr1_2:52353238-52353257 | None:intergenic | 40.0% | |
| !! | CTCAAGGGAGAAGCATTAAT+TGG | + | chr1_2:52353250-52353269 | None:intergenic | 40.0% |
| TATTTACCTTGCGGACTCAA+GGG | + | chr1_2:52353265-52353284 | None:intergenic | 40.0% | |
| ATATTTACCTTGCGGACTCA+AGG | + | chr1_2:52353266-52353285 | None:intergenic | 40.0% | |
| TGCAATTCAACACTCAGCAA+AGG | - | chr1_2:52353451-52353470 | Msa0076350:CDS | 40.0% | |
| GCATGATTGTGGAAGGAAGA+AGG | + | chr1_2:52351407-52351426 | None:intergenic | 45.0% | |
| ! | TCAGGTTGCATGATTGTGGA+AGG | + | chr1_2:52351414-52351433 | None:intergenic | 45.0% |
| !! | CCATTCAGGTTGCATGATTG+TGG | + | chr1_2:52351418-52351437 | None:intergenic | 45.0% |
| CCACAATCATGCAACCTGAA+TGG | - | chr1_2:52351415-52351434 | Msa0076350:intron | 45.0% | |
| TGGATTCCATGCACAATGCA+AGG | - | chr1_2:52351435-52351454 | Msa0076350:CDS | 45.0% | |
| GGATTCCATGCACAATGCAA+GGG | - | chr1_2:52351436-52351455 | Msa0076350:CDS | 45.0% | |
| TAAGTACCTGGAGCTGGTAA+AGG | + | chr1_2:52351576-52351595 | None:intergenic | 45.0% | |
| GTCCAATGGCTAAACTCATG+TGG | - | chr1_2:52351630-52351649 | Msa0076350:intron | 45.0% | |
| CTCCACATGAGTTTAGCCAT+TGG | + | chr1_2:52351635-52351654 | None:intergenic | 45.0% | |
| AAGCACTCACATTTCAGGAG+GGG | + | chr1_2:52352517-52352536 | None:intergenic | 45.0% | |
| GTGGGGATTCCTCATGTATA+CGG | + | chr1_2:52352753-52352772 | None:intergenic | 45.0% | |
| !!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr1_2:52352770-52352789 | None:intergenic | 45.0% |
| !!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr1_2:52352772-52352791 | None:intergenic | 45.0% |
| CACCTAACACCAAAAGCAAG+AGG | - | chr1_2:52352770-52352789 | Msa0076350:intron | 45.0% | |
| !!! | TTTTTTGAGGCCCATCCTTG+GGG | - | chr1_2:52352895-52352914 | Msa0076350:intron | 45.0% |
| ACATGCTCAACGTTGAGTTC+TGG | - | chr1_2:52353095-52353114 | Msa0076350:intron | 45.0% | |
| TTGGCAGGTCCAGCTATATT+TGG | - | chr1_2:52353202-52353221 | Msa0076350:intron | 45.0% | |
| CGCAGTAGATGAAACCATTG+AGG | - | chr1_2:52353409-52353428 | Msa0076350:CDS | 45.0% | |
| AGGAGAATCAGCTACCTCAA+TGG | + | chr1_2:52353426-52353445 | None:intergenic | 45.0% | |
| TAGTCGCCCAAGAAAACTTC+AGG | - | chr1_2:52353508-52353527 | Msa0076350:CDS | 45.0% | |
| GTGTACCCTTGCATTGTGCA+TGG | + | chr1_2:52351444-52351463 | None:intergenic | 50.0% | |
| ! | TTCAACCTTTTCTCCACGCC+AGG | - | chr1_2:52352565-52352584 | Msa0076350:intron | 50.0% |
| ! | TCAACCTTTTCTCCACGCCA+GGG | - | chr1_2:52352566-52352585 | Msa0076350:intron | 50.0% |
| !! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr1_2:52352611-52352630 | Msa0076350:intron | 50.0% |
| GTTTGCACCCCCTTTATTGC+AGG | - | chr1_2:52352832-52352851 | Msa0076350:intron | 50.0% | |
| !!! | TTTTTGAGGCCCATCCTTGG+GGG | - | chr1_2:52352896-52352915 | Msa0076350:intron | 50.0% |
| ! | ATCTATGATGGCGTGGAGCA+GGG | + | chr1_2:52352964-52352983 | None:intergenic | 50.0% |
| ! | TGAGACCATCTATGATGGCG+TGG | + | chr1_2:52352971-52352990 | None:intergenic | 50.0% |
| GGACCTGCCAACAAAAGCAA+AGG | + | chr1_2:52353193-52353212 | None:intergenic | 50.0% | |
| !!! | GGTACTAGTTTTGTCGGTGC+TGG | + | chr1_2:52353479-52353498 | None:intergenic | 50.0% |
| CTTGGGCGACTATGCTTCAT+TGG | + | chr1_2:52353500-52353519 | None:intergenic | 50.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | + | chr1_2:52352592-52352611 | None:intergenic | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | - | chr1_2:52352592-52352611 | Msa0076350:intron | 55.0% | |
| GCAAACAGCTCAACCGAGCT+GGG | + | chr1_2:52352925-52352944 | None:intergenic | 55.0% | |
| TGCAAACAGCTCAACCGAGC+TGG | + | chr1_2:52352926-52352945 | None:intergenic | 55.0% | |
| ! | CATCTATGATGGCGTGGAGC+AGG | + | chr1_2:52352965-52352984 | None:intergenic | 55.0% |
| CTGCTCCACGCCATCATAGA+TGG | - | chr1_2:52352963-52352982 | Msa0076350:intron | 55.0% | |
| GGCTCTCCTTTACCAGCTCC+AGG | - | chr1_2:52351567-52351586 | Msa0076350:intron | 60.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | - | chr1_2:52352584-52352603 | Msa0076350:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | + | chr1_2:52352596-52352615 | None:intergenic | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | + | chr1_2:52352597-52352616 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+TGG | - | chr1_2:52352598-52352617 | Msa0076350:intron | 60.0% | |
| GAATTCGGAGGCTCGGCTCT+GGG | - | chr1_2:52352599-52352618 | Msa0076350:intron | 60.0% | |
| GAGCTGTTTGCACCCCCTCA+AGG | - | chr1_2:52352934-52352953 | Msa0076350:intron | 60.0% | |
| TGTTTGCACCCCCTCAAGGC+CGG | - | chr1_2:52352938-52352957 | Msa0076350:intron | 60.0% | |
| GCTTCTCCCTTGAGTCCGCA+AGG | - | chr1_2:52353256-52353275 | Msa0076350:CDS | 60.0% | |
| ACGGCCCTGGCGTGGAGAAA+AGG | + | chr1_2:52352573-52352592 | None:intergenic | 65.0% | |
| CGAATTCTCAGGGACGGCCC+TGG | + | chr1_2:52352586-52352605 | None:intergenic | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | - | chr1_2:52352587-52352606 | Msa0076350:intron | 65.0% | |
| TTGAGGCCCATCCTTGGGGG+AGG | - | chr1_2:52352899-52352918 | Msa0076350:intron | 65.0% | |
| ! | ATGATGGCGTGGAGCAGGGC+CGG | + | chr1_2:52352960-52352979 | None:intergenic | 65.0% |
| GCTGGGCCTCCCCCAAGGAT+GGG | + | chr1_2:52352908-52352927 | None:intergenic | 70.0% | |
| AGCTGGGCCTCCCCCAAGGA+TGG | + | chr1_2:52352909-52352928 | None:intergenic | 70.0% | |
| TCCTTGGGGGAGGCCCAGCT+CGG | - | chr1_2:52352909-52352928 | Msa0076350:intron | 70.0% | |
| TGGAGCAGGGCCGGCCTTGA+GGG | + | chr1_2:52352951-52352970 | None:intergenic | 70.0% | |
| TCTCAGGGACGGCCCTGGCG+TGG | + | chr1_2:52352581-52352600 | None:intergenic | 75.0% | |
| ACCGAGCTGGGCCTCCCCCA+AGG | + | chr1_2:52352913-52352932 | None:intergenic | 75.0% | |
| GAGCAGGGCCGGCCTTGAGG+GGG | + | chr1_2:52352949-52352968 | None:intergenic | 75.0% | |
| GGAGCAGGGCCGGCCTTGAG+GGG | + | chr1_2:52352950-52352969 | None:intergenic | 75.0% | |
| GTGGAGCAGGGCCGGCCTTG+AGG | + | chr1_2:52352952-52352971 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52351107 | 52353602 | 52351107 | ID=Msa0076350;Name=Msa0076350 |
| chr1_2 | mRNA | 52351107 | 52353602 | 52351107 | ID=Msa0076350-mRNA-1;Parent=Msa0076350;Name=Msa0076350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|4|58|190 |
| chr1_2 | exon | 52351107 | 52351295 | 52351107 | ID=Msa0076350-mRNA-1:exon:16182;Parent=Msa0076350-mRNA-1 |
| chr1_2 | exon | 52351432 | 52351500 | 52351432 | ID=Msa0076350-mRNA-1:exon:16181;Parent=Msa0076350-mRNA-1 |
| chr1_2 | exon | 52353121 | 52353147 | 52353121 | ID=Msa0076350-mRNA-1:exon:16180;Parent=Msa0076350-mRNA-1 |
| chr1_2 | exon | 52353252 | 52353602 | 52353252 | ID=Msa0076350-mRNA-1:exon:16179;Parent=Msa0076350-mRNA-1 |
| chr1_2 | five_prime_UTR | 52353598 | 52353602 | 52353598 | ID=Msa0076350-mRNA-1:five_prime_utr;Parent=Msa0076350-mRNA-1 |
| chr1_2 | CDS | 52353252 | 52353597 | 52353252 | ID=Msa0076350-mRNA-1:cds;Parent=Msa0076350-mRNA-1 |
| chr1_2 | CDS | 52353121 | 52353147 | 52353121 | ID=Msa0076350-mRNA-1:cds;Parent=Msa0076350-mRNA-1 |
| chr1_2 | CDS | 52351432 | 52351500 | 52351432 | ID=Msa0076350-mRNA-1:cds;Parent=Msa0076350-mRNA-1 |
| chr1_2 | CDS | 52351165 | 52351295 | 52351165 | ID=Msa0076350-mRNA-1:cds;Parent=Msa0076350-mRNA-1 |
| chr1_2 | three_prime_UTR | 52351107 | 52351164 | 52351107 | ID=Msa0076350-mRNA-1:three_prime_utr;Parent=Msa0076350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
