Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119240 | XP_003590611.1 | 94.211 | 190 | 11 | 0 | 1 | 190 | 1 | 190 | 1.02e-124 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119240 | sp|Q94AX3|LTG16_ARATH | 42.458 | 179 | 88 | 5 | 9 | 182 | 1 | 169 | 1.09e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119240 | G7IDM6 | 94.211 | 190 | 11 | 0 | 1 | 190 | 1 | 190 | 4.86e-125 | 359 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0119240 | 0.803774 | 2.969454e-49 | -8.615850e-47 |
| Msa0015950 | Msa0119240 | 0.800034 | 1.741154e-48 | -8.615850e-47 |
| Msa0016070 | Msa0119240 | 0.803218 | 3.870892e-49 | -8.615850e-47 |
| Msa0016080 | Msa0119240 | 0.818122 | 2.311241e-52 | -8.615850e-47 |
| Msa0024650 | Msa0119240 | 0.806863 | 6.689859e-50 | -8.615850e-47 |
| Msa0025570 | Msa0119240 | 0.826595 | 2.489396e-54 | -8.615850e-47 |
| Msa0028690 | Msa0119240 | 0.925255 | 2.350741e-90 | -8.615850e-47 |
| Msa0038150 | Msa0119240 | -0.803669 | 3.121241e-49 | -8.615850e-47 |
| Msa0041630 | Msa0119240 | 0.836836 | 7.410019e-57 | -8.615850e-47 |
| Msa0044160 | Msa0119240 | 0.804014 | 2.647596e-49 | -8.615850e-47 |
| Msa0060410 | Msa0119240 | 0.856806 | 2.508167e-62 | -8.615850e-47 |
| Msa0062190 | Msa0119240 | 0.820387 | 7.046000e-53 | -8.615850e-47 |
| Msa0072180 | Msa0119240 | 0.829293 | 5.582441e-55 | -8.615850e-47 |
| Msa0073110 | Msa0119240 | 0.818894 | 1.544338e-52 | -8.615850e-47 |
| Msa0076350 | Msa0119240 | 0.807188 | 5.710660e-50 | -8.615850e-47 |
| Msa0089190 | Msa0119240 | 0.835149 | 1.984962e-56 | -8.615850e-47 |
| Msa0106540 | Msa0119240 | 0.815136 | 1.079007e-51 | -8.615850e-47 |
| Msa0117650 | Msa0119240 | 0.801932 | 7.130880e-49 | -8.615850e-47 |
| Msa0119240 | Msa0136000 | 0.848416 | 6.214698e-60 | -8.615850e-47 |
| Msa0119240 | Msa0136180 | -0.801025 | 1.093709e-48 | -8.615850e-47 |
| Msa0119240 | Msa0163690 | 0.805239 | 1.469741e-49 | -8.615850e-47 |
| Msa0119240 | Msa0168750 | 0.910303 | 2.179240e-82 | -8.615850e-47 |
| Msa0119240 | Msa0189990 | 0.873589 | 1.308113e-67 | -8.615850e-47 |
| Msa0119240 | Msa0210610 | 0.803610 | 3.211067e-49 | -8.615850e-47 |
| Msa0119240 | Msa0217060 | 0.822001 | 2.991970e-53 | -8.615850e-47 |
| Msa0119240 | Msa0218500 | 0.825515 | 4.495691e-54 | -8.615850e-47 |
| Msa0119240 | Msa0218610 | 0.804269 | 2.342979e-49 | -8.615850e-47 |
| Msa0119240 | Msa0247780 | 0.815432 | 9.271043e-52 | -8.615850e-47 |
| Msa0119240 | Msa0253230 | -0.800192 | 1.617241e-48 | -8.615850e-47 |
| Msa0119240 | Msa0256920 | 0.810961 | 8.882415e-51 | -8.615850e-47 |
| Msa0119240 | Msa0258260 | 0.821743 | 3.432329e-53 | -8.615850e-47 |
| Msa0119240 | Msa0279810 | 0.810037 | 1.406471e-50 | -8.615850e-47 |
| Msa0119240 | Msa0282830 | 0.814535 | 1.466620e-51 | -8.615850e-47 |
| Msa0119240 | Msa0286360 | 0.845991 | 2.874957e-59 | -8.615850e-47 |
| Msa0119240 | Msa0287480 | 0.807034 | 6.155148e-50 | -8.615850e-47 |
| Msa0119240 | Msa0297340 | 0.830414 | 2.976828e-55 | -8.615850e-47 |
| Msa0119240 | Msa0307630 | 0.801734 | 7.830884e-49 | -8.615850e-47 |
| Msa0119240 | Msa0307740 | 0.885936 | 5.289776e-72 | -8.615850e-47 |
| Msa0119240 | Msa0313900 | 0.810070 | 1.383642e-50 | -8.615850e-47 |
| Msa0119240 | Msa0318490 | 0.813692 | 2.250779e-51 | -8.615850e-47 |
| Msa0119240 | Msa0319220 | 0.806967 | 6.360897e-50 | -8.615850e-47 |
| Msa0119240 | Msa0325260 | 0.813191 | 2.900250e-51 | -8.615850e-47 |
| Msa0119240 | Msa0333770 | 0.807577 | 4.723143e-50 | -8.615850e-47 |
| Msa0119240 | Msa0343210 | 0.828793 | 7.378153e-55 | -8.615850e-47 |
| Msa0119240 | Msa0356270 | 0.839745 | 1.318724e-57 | -8.615850e-47 |
| Msa0119240 | Msa0364030 | -0.803032 | 4.230609e-49 | -8.615850e-47 |
| Msa0119240 | Msa0364900 | 0.820888 | 5.405992e-53 | -8.615850e-47 |
| Msa0119240 | Msa0365210 | 0.810423 | 1.161203e-50 | -8.615850e-47 |
| Msa0119240 | Msa0403740 | -0.802356 | 5.833331e-49 | -8.615850e-47 |
| Msa0119240 | Msa0418230 | 0.805066 | 1.597109e-49 | -8.615850e-47 |
| Msa0119240 | Msa0437520 | 0.805351 | 1.392295e-49 | -8.615850e-47 |
| Msa0119240 | Msa0448950 | 0.806333 | 8.655411e-50 | -8.615850e-47 |
| Msa0119240 | Msa0457060 | 0.832501 | 9.119137e-56 | -8.615850e-47 |
| Msa0119240 | Msa0464620 | 0.815036 | 1.135460e-51 | -8.615850e-47 |
| Msa0119240 | Msa0480900 | -0.814954 | 1.184448e-51 | -8.615850e-47 |
| Msa0119240 | Msa0504350 | 0.804672 | 1.930972e-49 | -8.615850e-47 |
| Msa0119240 | Msa0510050 | 0.817888 | 2.610561e-52 | -8.615850e-47 |
| Msa0119240 | Msa0547370 | 0.801813 | 7.543130e-49 | -8.615850e-47 |
| Msa0119240 | Msa0557240 | 0.800439 | 1.440795e-48 | -8.615850e-47 |
| Msa0119240 | Msa0560060 | 0.811718 | 6.084045e-51 | -8.615850e-47 |
| Msa0119240 | Msa0566280 | 0.848360 | 6.442121e-60 | -8.615850e-47 |
| Msa0119240 | Msa0566490 | 0.804274 | 2.336554e-49 | -8.615850e-47 |
| Msa0119240 | Msa0567330 | 0.846052 | 2.766699e-59 | -8.615850e-47 |
| Msa0119240 | Msa0567570 | 0.832334 | 1.003236e-55 | -8.615850e-47 |
| Msa0119240 | Msa0576320 | 0.833921 | 4.039348e-56 | -8.615850e-47 |
| Msa0119240 | Msa0590620 | -0.819068 | 1.410067e-52 | -8.615850e-47 |
| Msa0119240 | Msa0598310 | 0.810622 | 1.051823e-50 | -8.615850e-47 |
| Msa0119240 | Msa0603310 | 0.808234 | 3.422570e-50 | -8.615850e-47 |
| Msa0119240 | Msa0606820 | 0.804776 | 1.836268e-49 | -8.615850e-47 |
| Msa0119240 | Msa0636540 | 0.809613 | 1.735406e-50 | -8.615850e-47 |
| Msa0119240 | Msa0644330 | 0.820041 | 8.456024e-53 | -8.615850e-47 |
| Msa0119240 | Msa0647300 | 0.809325 | 2.000373e-50 | -8.615850e-47 |
| Msa0119240 | Msa0657710 | 0.828159 | 1.049698e-54 | -8.615850e-47 |
| Msa0119240 | Msa0657720 | 0.816986 | 4.166314e-52 | -8.615850e-47 |
| Msa0119240 | Msa0658150 | 0.848466 | 6.020652e-60 | -8.615850e-47 |
| Msa0119240 | Msa0676570 | -0.802375 | 5.781151e-49 | -8.615850e-47 |
| Msa0119240 | Msa0682110 | 0.836284 | 1.024357e-56 | -8.615850e-47 |
| Msa0119240 | Msa0682160 | 0.822123 | 2.803653e-53 | -8.615850e-47 |
| Msa0119240 | Msa0682910 | 0.802024 | 6.825094e-49 | -8.615850e-47 |
| Msa0119240 | Msa0686040 | 0.804922 | 1.712167e-49 | -8.615850e-47 |
| Msa0119240 | Msa0686830 | 0.812880 | 3.393276e-51 | -8.615850e-47 |
| Msa0119240 | Msa0702790 | 0.808366 | 3.208143e-50 | -8.615850e-47 |
| Msa0119240 | Msa0702800 | 0.826226 | 3.046924e-54 | -8.615850e-47 |
| Msa0119240 | Msa0703000 | 0.846694 | 1.849512e-59 | -8.615850e-47 |
| Msa0119240 | Msa0707330 | 0.817242 | 3.650683e-52 | -8.615850e-47 |
| Msa0119240 | Msa0712880 | 0.801111 | 1.050276e-48 | -8.615850e-47 |
| Msa0119240 | Msa0722890 | 0.802580 | 5.243444e-49 | -8.615850e-47 |
| Msa0119240 | Msa0723090 | 0.823513 | 1.330532e-53 | -8.615850e-47 |
| Msa0119240 | Msa0724860 | 0.826188 | 3.110985e-54 | -8.615850e-47 |
| Msa0119240 | Msa0736920 | 0.810451 | 1.145368e-50 | -8.615850e-47 |
| Msa0119240 | Msa0742370 | -0.816955 | 4.233637e-52 | -8.615850e-47 |
| Msa0119240 | Msa0755880 | 0.809884 | 1.517346e-50 | -8.615850e-47 |
| Msa0119240 | Msa0769540 | 0.862782 | 3.971129e-64 | -8.615850e-47 |
| Msa0119240 | Msa0773030 | 0.855569 | 5.777315e-62 | -8.615850e-47 |
| Msa0119240 | Msa0778570 | 0.813073 | 3.078058e-51 | -8.615850e-47 |
| Msa0119240 | Msa0792410 | 0.804055 | 2.595685e-49 | -8.615850e-47 |
| Msa0119240 | Msa0800120 | 0.808283 | 3.341684e-50 | -8.615850e-47 |
| Msa0119240 | Msa0800150 | 0.815817 | 7.612300e-52 | -8.615850e-47 |
| Msa0119240 | Msa0810330 | 0.871038 | 9.262782e-67 | -8.615850e-47 |
| Msa0119240 | Msa0812720 | 0.842932 | 1.912046e-58 | -8.615850e-47 |
| Msa0119240 | Msa0823480 | -0.831087 | 2.035914e-55 | -8.615850e-47 |
| Msa0119240 | Msa0828950 | 0.808729 | 2.683632e-50 | -8.615850e-47 |
| Msa0119240 | Msa0828960 | 0.822959 | 1.791909e-53 | -8.615850e-47 |
| Msa0119240 | Msa0838210 | 0.803384 | 3.577689e-49 | -8.615850e-47 |
| Msa0119240 | Msa0850640 | 0.873270 | 1.674093e-67 | -8.615850e-47 |
| Msa0119240 | Msa0862480 | -0.820584 | 6.349303e-53 | -8.615850e-47 |
| Msa0119240 | Msa0907880 | 0.889737 | 1.852954e-73 | -8.615850e-47 |
| Msa0119240 | Msa0909260 | 0.818399 | 2.000589e-52 | -8.615850e-47 |
| Msa0119240 | Msa0964400 | -0.807449 | 5.026387e-50 | -8.615850e-47 |
| Msa0119240 | Msa1015360 | 0.839435 | 1.587707e-57 | -8.615850e-47 |
| Msa0119240 | Msa1019420 | 0.820126 | 8.087526e-53 | -8.615850e-47 |
| Msa0119240 | Msa1022420 | 0.818729 | 1.684036e-52 | -8.615850e-47 |
| Msa0119240 | Msa1029860 | 0.811979 | 5.340121e-51 | -8.615850e-47 |
| Msa0119240 | Msa1042300 | 0.813637 | 2.314159e-51 | -8.615850e-47 |
| Msa0119240 | Msa1044250 | 0.821006 | 5.079070e-53 | -8.615850e-47 |
| Msa0119240 | Msa1062290 | 0.823063 | 1.694236e-53 | -8.615850e-47 |
| Msa0119240 | Msa1068730 | 0.803906 | 2.787287e-49 | -8.615850e-47 |
| Msa0119240 | Msa1092310 | 0.826500 | 2.622606e-54 | -8.615850e-47 |
| Msa0119240 | Msa1103450 | 0.801608 | 8.310028e-49 | -8.615850e-47 |
| Msa0119240 | Msa1111910 | 0.815461 | 9.136265e-52 | -8.615850e-47 |
| Msa0119240 | Msa1129120 | -0.800958 | 1.128899e-48 | -8.615850e-47 |
| Msa0119240 | Msa1131270 | 0.811632 | 6.353609e-51 | -8.615850e-47 |
| Msa0119240 | Msa1149910 | 0.801361 | 9.335647e-49 | -8.615850e-47 |
| Msa0119240 | Msa1154320 | 0.831129 | 1.988157e-55 | -8.615850e-47 |
| Msa0119240 | Msa1184680 | 0.822695 | 2.064843e-53 | -8.615850e-47 |
| Msa0119240 | Msa1193940 | 0.803320 | 3.687228e-49 | -8.615850e-47 |
| Msa0119240 | Msa1199540 | -0.803888 | 2.811265e-49 | -8.615850e-47 |
| Msa0119240 | Msa1202800 | 0.831129 | 1.988385e-55 | -8.615850e-47 |
| Msa0119240 | Msa1203440 | 0.821937 | 3.094918e-53 | -8.615850e-47 |
| Msa0119240 | Msa1203650 | 0.835955 | 1.241585e-56 | -8.615850e-47 |
| Msa0119240 | Msa1211940 | 0.879168 | 1.553261e-69 | -8.615850e-47 |
| Msa0119240 | Msa1212080 | 0.862122 | 6.337944e-64 | -8.615850e-47 |
| Msa0119240 | Msa1242160 | 0.809169 | 2.160601e-50 | -8.615850e-47 |
| Msa0119240 | Msa1255210 | 0.814850 | 1.248815e-51 | -8.615850e-47 |
| Msa0119240 | Msa1255690 | 0.823812 | 1.132139e-53 | -8.615850e-47 |
| Msa0119240 | Msa1263110 | 0.802254 | 6.120882e-49 | -8.615850e-47 |
| Msa0119240 | Msa1268360 | 0.815916 | 7.233740e-52 | -8.615850e-47 |
| Msa0119240 | Msa1269200 | 0.806887 | 6.612565e-50 | -8.615850e-47 |
| Msa0119240 | Msa1273320 | 0.832670 | 8.277898e-56 | -8.615850e-47 |
| Msa0119240 | Msa1279200 | -0.802583 | 5.237250e-49 | -8.615850e-47 |
| Msa0119240 | Msa1283070 | 0.806371 | 8.496258e-50 | -8.615850e-47 |
| Msa0119240 | Msa1283930 | 0.818480 | 1.917513e-52 | -8.615850e-47 |
| Msa0119240 | Msa1284020 | 0.818855 | 1.576546e-52 | -8.615850e-47 |
| Msa0119240 | Msa1287100 | -0.809481 | 1.852115e-50 | -8.615850e-47 |
| Msa0119240 | Msa1295210 | -0.808724 | 2.690603e-50 | -8.615850e-47 |
| Msa0119240 | Msa1295650 | 0.811197 | 7.895509e-51 | -8.615850e-47 |
| Msa0119240 | Msa1301280 | -0.808300 | 3.313672e-50 | -8.615850e-47 |
| Msa0119240 | Msa1322960 | 0.826195 | 3.100102e-54 | -8.615850e-47 |
| Msa0119240 | Msa1323070 | 0.808228 | 3.433874e-50 | -8.615850e-47 |
| Msa0119240 | Msa1343600 | 0.811551 | 6.615451e-51 | -8.615850e-47 |
| Msa0119240 | Msa1344450 | 0.866234 | 3.310301e-65 | -8.615850e-47 |
| Msa0119240 | Msa1361980 | 0.825956 | 3.533362e-54 | -8.615850e-47 |
| Msa0119240 | Msa1376880 | 0.817684 | 2.903002e-52 | -8.615850e-47 |
| Msa0119240 | Msa1384130 | 0.827442 | 1.560562e-54 | -8.615850e-47 |
| Msa0119240 | Msa1384700 | 0.803493 | 3.396217e-49 | -8.615850e-47 |
| Msa0119240 | Msa1386830 | 0.823556 | 1.299499e-53 | -8.615850e-47 |
| Msa0119240 | Msa1388720 | -0.800105 | 1.684242e-48 | -8.615850e-47 |
| Msa0119240 | Msa1395080 | 0.846681 | 1.864562e-59 | -8.615850e-47 |
| Msa0119240 | Msa1405830 | 0.814737 | 1.323123e-51 | -8.615850e-47 |
| Msa0119240 | Msa1407810 | 0.844405 | 7.715830e-59 | -8.615850e-47 |
| Msa0119240 | Msa1408390 | 0.802457 | 5.560476e-49 | -8.615850e-47 |
| Msa0119240 | Msa1413450 | 0.881447 | 2.381623e-70 | -8.615850e-47 |
| Msa0119240 | Msa1421630 | 0.807434 | 5.063996e-50 | -8.615850e-47 |
| Msa0119240 | Msa1430950 | 0.883614 | 3.864197e-71 | -8.615850e-47 |
| Msa0119240 | Msa1433040 | 0.827104 | 1.880506e-54 | -8.615850e-47 |
| Msa0119240 | Msa1433360 | 0.860101 | 2.611384e-63 | -8.615850e-47 |
| Msa0119240 | Msa1437780 | 0.845283 | 4.474057e-59 | -8.615850e-47 |
| Msa0119240 | Msa1439250 | 0.808582 | 2.885106e-50 | -8.615850e-47 |
| Msa0119240 | Msa1445530 | 0.827852 | 1.244273e-54 | -8.615850e-47 |
| Msa0119240 | Msa1448820 | 0.824666 | 7.134621e-54 | -8.615850e-47 |
| Msa0119240 | Msa1462610 | 0.801257 | 9.804064e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119240 | MtrunA17_Chr1g0185311 | 94.211 | 190 | 11 | 0 | 1 | 190 | 1 | 190 | 9.37e-129 | 359 |
| Msa0119240 | MtrunA17_Chr7g0260071 | 50.282 | 177 | 73 | 7 | 7 | 181 | 7 | 170 | 9.35e-38 | 129 |
| Msa0119240 | MtrunA17_Chr5g0394991 | 42.515 | 167 | 86 | 7 | 5 | 169 | 6 | 164 | 4.19e-32 | 115 |
| Msa0119240 | MtrunA17_Chr1g0205171 | 40.606 | 165 | 71 | 6 | 26 | 168 | 26 | 185 | 3.38e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0119240 | AT2G48140.1 | 42.458 | 179 | 88 | 5 | 9 | 182 | 1 | 169 | 1.11e-35 | 124 |
| Msa0119240 | AT2G48140.2 | 58.586 | 99 | 39 | 1 | 27 | 125 | 22 | 118 | 1.13e-35 | 122 |
| Msa0119240 | AT1G05450.2 | 41.481 | 135 | 70 | 3 | 24 | 158 | 25 | 150 | 9.41e-28 | 103 |
| Msa0119240 | AT3G22620.1 | 41.860 | 86 | 47 | 2 | 32 | 117 | 29 | 111 | 8.42e-14 | 67.4 |
Find 48 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATATTCATATGCAATT+TGG | 0.201522 | 1_3:-42914939 | Msa0119240:three_prime_UTR |
| TTTAATCACATCAGTAAAAT+TGG | 0.205703 | 1_3:-42917009 | Msa0119240:CDS |
| TTGGCAGGTCCAGCTATATT+TGG | 0.239605 | 1_3:-42915314 | Msa0119240:intron |
| TGTTATTAAACCATTATAAT+TGG | 0.248933 | 1_3:+42916905 | None:intergenic |
| ATCTATGATGAGTACTAGTA+TGG | 0.275702 | 1_3:-42916853 | Msa0119240:CDS |
| GAAGGAAAGAACTCTATTAA+TGG | 0.297936 | 1_3:+42916782 | None:intergenic |
| GAGTGTTGAATTGCATATTT+AGG | 0.320907 | 1_3:+42915073 | None:intergenic |
| CTTGGGCGACTATGCTTCAT+TGG | 0.351622 | 1_3:+42915019 | None:intergenic |
| CTCAAGGGAGAAGCATTAAT+TGG | 0.353542 | 1_3:+42915269 | None:intergenic |
| ACAGGAAGCACCAATTATAA+TGG | 0.355204 | 1_3:-42916915 | Msa0119240:CDS |
| CACTTGGCTGTCCCATTGTT+GGG | 0.361954 | 1_3:+42917063 | None:intergenic |
| CCATGTGCAAATTACATTAC+AGG | 0.394871 | 1_3:-42916933 | Msa0119240:CDS |
| GAATCACAACAACTACTTGA+TGG | 0.400929 | 1_3:+42916882 | None:intergenic |
| TTAATGGGTGGTAGTTGAAA+TGG | 0.405959 | 1_3:+42916798 | None:intergenic |
| ATGTTGATATCACTTTCATT+TGG | 0.413972 | 1_3:+42917036 | None:intergenic |
| AAGGAAAGAACTCTATTAAT+GGG | 0.415197 | 1_3:+42916783 | None:intergenic |
| TAGTCGCCCAAGAAAACTTC+AGG | 0.419211 | 1_3:-42915008 | Msa0119240:CDS |
| GGCTCTCCTTTACCAGCTCC+AGG | 0.442482 | 1_3:-42916574 | Msa0119240:intron |
| ATTGTGCATGGAATCCATTC+AGG | 0.446420 | 1_3:+42916739 | None:intergenic |
| ACACTTGGCTGTCCCATTGT+TGG | 0.458362 | 1_3:+42917062 | None:intergenic |
| CCATTCAGGTTGCATGATTG+TGG | 0.485094 | 1_3:+42916753 | None:intergenic |
| CATTAATTGGCGGAAGAGAC+GGG | 0.492843 | 1_3:+42915282 | None:intergenic |
| ATATTTACCTTGCGGACTCA+AGG | 0.503866 | 1_3:+42915253 | None:intergenic |
| ACATTTGATCCAAATATAGC+TGG | 0.505446 | 1_3:+42915305 | None:intergenic |
| CCACAATCATGCAACCTGAA+TGG | 0.505888 | 1_3:-42916753 | Msa0119240:CDS |
| GCATTAATTGGCGGAAGAGA+CGG | 0.508648 | 1_3:+42915281 | None:intergenic |
| TGGATTCCATGCACAATGCA+AGG | 0.527893 | 1_3:-42916733 | Msa0119240:CDS |
| TAAGTACCTGGAGCTGGTAA+AGG | 0.529079 | 1_3:+42916568 | None:intergenic |
| ATTCTTGCAGACCCAACAAT+GGG | 0.532295 | 1_3:-42917074 | None:intergenic |
| ACTTTCATTTGGAAAACACT+TGG | 0.536864 | 1_3:+42917047 | None:intergenic |
| ACAGATTAGTACACCTTGCA+CGG | 0.538753 | 1_3:-42916979 | Msa0119240:CDS |
| GCATGATTGTGGAAGGAAGA+AGG | 0.544924 | 1_3:+42916764 | None:intergenic |
| TAATAATAAGTACCTGGAGC+TGG | 0.545527 | 1_3:+42916562 | None:intergenic |
| TCAGGTTGCATGATTGTGGA+AGG | 0.574464 | 1_3:+42916757 | None:intergenic |
| TATTTACCTTGCGGACTCAA+GGG | 0.591593 | 1_3:+42915254 | None:intergenic |
| CATTCTTGCAGACCCAACAA+TGG | 0.593953 | 1_3:-42917075 | None:intergenic |
| AAGGGAGAAGCATTAATTGG+CGG | 0.596813 | 1_3:+42915272 | None:intergenic |
| CCTGTAATGTAATTTGCACA+TGG | 0.606044 | 1_3:+42916933 | None:intergenic |
| AGGAGAATCAGCTACCTCGA+TGG | 0.614818 | 1_3:+42915093 | None:intergenic |
| GTGTACCCTTGCATTGTGCA+TGG | 0.619403 | 1_3:+42916727 | None:intergenic |
| GGATTCCATGCACAATGCAA+GGG | 0.619466 | 1_3:-42916732 | Msa0119240:intron |
| TGCAATTCAACACTCAGCAA+AGG | 0.626463 | 1_3:-42915065 | Msa0119240:CDS |
| GCTTCTCCCTTGAGTCCGCA+AGG | 0.628732 | 1_3:-42915260 | Msa0119240:intron |
| GAAAGAACTCTATTAATGGG+TGG | 0.644751 | 1_3:+42916786 | None:intergenic |
| TCTATGATGAGTACTAGTAT+GGG | 0.647243 | 1_3:-42916852 | Msa0119240:CDS |
| CTAATCATAGAAGCCGTGCA+AGG | 0.652093 | 1_3:+42916966 | None:intergenic |
| CGCAGTAGATGAAACCATCG+AGG | 0.716315 | 1_3:-42915107 | Msa0119240:intron |
| TGGTAGTTGAAATGGAACGT+TGG | 0.743680 | 1_3:+42916806 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAGGAAATTAAAAT+AGG | + | chr1_3:42915346-42915365 | None:intergenic | 10.0% |
| !!! | TTATATACAAATGATTTTAA+AGG | + | chr1_3:42915359-42915378 | None:intergenic | 10.0% |
| !!! | AAATGAAACAATTTTTTTAA+AGG | + | chr1_3:42915972-42915991 | None:intergenic | 10.0% |
| !!! | ATTTTAAAGGAAATTAAAAT+AGG | + | chr1_3:42915346-42915365 | None:intergenic | 10.0% |
| !!! | TTATATACAAATGATTTTAA+AGG | + | chr1_3:42915359-42915378 | None:intergenic | 10.0% |
| !!! | AAATGAAACAATTTTTTTAA+AGG | + | chr1_3:42915972-42915991 | None:intergenic | 10.0% |
| !! | TGTTATTAAACCATTATAAT+TGG | + | chr1_3:42915095-42915114 | None:intergenic | 15.0% |
| !! | GTATATAAAATGTCTAATAA+AGG | - | chr1_3:42915371-42915390 | Msa0119240:intron | 15.0% |
| !! | TTTAATTAATAATAAGTACC+TGG | + | chr1_3:42915444-42915463 | None:intergenic | 15.0% |
| !!! | TTTTAAACATTTTATTTGCA+AGG | - | chr1_3:42915595-42915614 | Msa0119240:intron | 15.0% |
| !! | TATGTAATTAAAAACTTGAT+CGG | + | chr1_3:42915631-42915650 | None:intergenic | 15.0% |
| !!! | AAATTATTTTACTTTCACTT+TGG | - | chr1_3:42915890-42915909 | Msa0119240:intron | 15.0% |
| !!! | TTGTGGTTATTTTATAATTT+TGG | + | chr1_3:42916225-42916244 | None:intergenic | 15.0% |
| !!! | ATGATCTTTAAAAATTATTC+AGG | - | chr1_3:42916621-42916640 | Msa0119240:intron | 15.0% |
| !! | TATGTAAACACAAAATTAAA+AGG | - | chr1_3:42916794-42916813 | Msa0119240:CDS | 15.0% |
| !! | ATGTAAACACAAAATTAAAA+GGG | - | chr1_3:42916795-42916814 | Msa0119240:CDS | 15.0% |
| !!! | ATTTTTTATGTCAACAAATT+GGG | + | chr1_3:42916854-42916873 | None:intergenic | 15.0% |
| !!! | TATTTTTTATGTCAACAAAT+TGG | + | chr1_3:42916855-42916874 | None:intergenic | 15.0% |
| !! | ATTTATATTCATATGCAATT+TGG | - | chr1_3:42917058-42917077 | Msa0119240:CDS | 15.0% |
| !! | TGTTATTAAACCATTATAAT+TGG | + | chr1_3:42915095-42915114 | None:intergenic | 15.0% |
| !! | GTATATAAAATGTCTAATAA+AGG | - | chr1_3:42915371-42915390 | Msa0119240:intron | 15.0% |
| !! | TTTAATTAATAATAAGTACC+TGG | + | chr1_3:42915444-42915463 | None:intergenic | 15.0% |
| !!! | TTTTAAACATTTTATTTGCA+AGG | - | chr1_3:42915595-42915614 | Msa0119240:intron | 15.0% |
| !! | TATGTAATTAAAAACTTGAT+CGG | + | chr1_3:42915631-42915650 | None:intergenic | 15.0% |
| !!! | AAATTATTTTACTTTCACTT+TGG | - | chr1_3:42915890-42915909 | Msa0119240:intron | 15.0% |
| !!! | TTGTGGTTATTTTATAATTT+TGG | + | chr1_3:42916225-42916244 | None:intergenic | 15.0% |
| !!! | ATGATCTTTAAAAATTATTC+AGG | - | chr1_3:42916621-42916640 | Msa0119240:intron | 15.0% |
| !! | TATGTAAACACAAAATTAAA+AGG | - | chr1_3:42916794-42916813 | Msa0119240:CDS | 15.0% |
| !! | ATGTAAACACAAAATTAAAA+GGG | - | chr1_3:42916795-42916814 | Msa0119240:CDS | 15.0% |
| !!! | ATTTTTTATGTCAACAAATT+GGG | + | chr1_3:42916854-42916873 | None:intergenic | 15.0% |
| !!! | TATTTTTTATGTCAACAAAT+TGG | + | chr1_3:42916855-42916874 | None:intergenic | 15.0% |
| !! | ATTTATATTCATATGCAATT+TGG | - | chr1_3:42917058-42917077 | Msa0119240:CDS | 15.0% |
| !!! | ATTTTACTGATGTGATTAAA+AGG | + | chr1_3:42914988-42915007 | None:intergenic | 20.0% |
| !! | TTTAATCACATCAGTAAAAT+TGG | - | chr1_3:42914988-42915007 | Msa0119240:exon | 20.0% |
| !! | ATGTAACATTCATATATAAG+AGG | + | chr1_3:42916567-42916586 | None:intergenic | 20.0% |
| !!! | ATTTTACTGATGTGATTAAA+AGG | + | chr1_3:42914988-42915007 | None:intergenic | 20.0% |
| !! | TTTAATCACATCAGTAAAAT+TGG | - | chr1_3:42914988-42915007 | Msa0119240:exon | 20.0% |
| !! | ATGTAACATTCATATATAAG+AGG | + | chr1_3:42916567-42916586 | None:intergenic | 20.0% |
| ! | ATGTTGATATCACTTTCATT+TGG | + | chr1_3:42914964-42914983 | None:intergenic | 25.0% |
| !!! | ACATCAGTAAAATTGGTTTT+TGG | - | chr1_3:42914995-42915014 | Msa0119240:CDS | 25.0% |
| ! | AAGGAAAGAACTCTATTAAT+GGG | + | chr1_3:42915217-42915236 | None:intergenic | 25.0% |
| !! | ATCACATAATTTGTCACAAA+AGG | + | chr1_3:42915313-42915332 | None:intergenic | 25.0% |
| !! | TTTTGTGACAAATTATGTGA+TGG | - | chr1_3:42915312-42915331 | Msa0119240:intron | 25.0% |
| !!! | ATTGTTTTTAAGTAGTCCAA+TGG | - | chr1_3:42915472-42915491 | Msa0119240:intron | 25.0% |
| ! | GAAAAAGAATAGGTTAAAGA+CGG | + | chr1_3:42915661-42915680 | None:intergenic | 25.0% |
| !!! | AAAAAATTAGTGGACTCATA+TGG | + | chr1_3:42915708-42915727 | None:intergenic | 25.0% |
| ! | GATGTTCTCAAAAAAATTAG+TGG | + | chr1_3:42915718-42915737 | None:intergenic | 25.0% |
| !!! | CTCTCATTTGAGTTTTTAAA+CGG | - | chr1_3:42915749-42915768 | Msa0119240:intron | 25.0% |
| ! | CAAACTGTAAAATGTTTGTA+AGG | + | chr1_3:42915947-42915966 | None:intergenic | 25.0% |
| !! | CTTACAAACATTTTACAGTT+TGG | - | chr1_3:42915945-42915964 | Msa0119240:intron | 25.0% |
| ! | ATTAGATACTTTGATGCTTT+AGG | + | chr1_3:42916062-42916081 | None:intergenic | 25.0% |
| !! | TGGTCTCTTAAGTTAATTTT+AGG | + | chr1_3:42916205-42916224 | None:intergenic | 25.0% |
| !! | GTATCAAGTTTAAAACTACT+AGG | + | chr1_3:42916289-42916308 | None:intergenic | 25.0% |
| !!! | TGAGTTCTGGAAATATATAA+TGG | - | chr1_3:42916596-42916615 | Msa0119240:intron | 25.0% |
| ! | TAACAATGATATTTACCTTG+CGG | + | chr1_3:42916755-42916774 | None:intergenic | 25.0% |
| ! | AAACACAAAATTAAAAGGGT+TGG | - | chr1_3:42916799-42916818 | Msa0119240:CDS | 25.0% |
| ! | ATGTTGATATCACTTTCATT+TGG | + | chr1_3:42914964-42914983 | None:intergenic | 25.0% |
| !!! | ACATCAGTAAAATTGGTTTT+TGG | - | chr1_3:42914995-42915014 | Msa0119240:CDS | 25.0% |
| ! | AAGGAAAGAACTCTATTAAT+GGG | + | chr1_3:42915217-42915236 | None:intergenic | 25.0% |
| !! | ATCACATAATTTGTCACAAA+AGG | + | chr1_3:42915313-42915332 | None:intergenic | 25.0% |
| !! | TTTTGTGACAAATTATGTGA+TGG | - | chr1_3:42915312-42915331 | Msa0119240:intron | 25.0% |
| !!! | ATTGTTTTTAAGTAGTCCAA+TGG | - | chr1_3:42915472-42915491 | Msa0119240:intron | 25.0% |
| ! | GAAAAAGAATAGGTTAAAGA+CGG | + | chr1_3:42915661-42915680 | None:intergenic | 25.0% |
| !!! | AAAAAATTAGTGGACTCATA+TGG | + | chr1_3:42915708-42915727 | None:intergenic | 25.0% |
| ! | GATGTTCTCAAAAAAATTAG+TGG | + | chr1_3:42915718-42915737 | None:intergenic | 25.0% |
| !!! | CTCTCATTTGAGTTTTTAAA+CGG | - | chr1_3:42915749-42915768 | Msa0119240:intron | 25.0% |
| ! | CAAACTGTAAAATGTTTGTA+AGG | + | chr1_3:42915947-42915966 | None:intergenic | 25.0% |
| !! | CTTACAAACATTTTACAGTT+TGG | - | chr1_3:42915945-42915964 | Msa0119240:intron | 25.0% |
| ! | ATTAGATACTTTGATGCTTT+AGG | + | chr1_3:42916062-42916081 | None:intergenic | 25.0% |
| !! | TGGTCTCTTAAGTTAATTTT+AGG | + | chr1_3:42916205-42916224 | None:intergenic | 25.0% |
| !! | GTATCAAGTTTAAAACTACT+AGG | + | chr1_3:42916289-42916308 | None:intergenic | 25.0% |
| !!! | TGAGTTCTGGAAATATATAA+TGG | - | chr1_3:42916596-42916615 | Msa0119240:intron | 25.0% |
| ! | TAACAATGATATTTACCTTG+CGG | + | chr1_3:42916755-42916774 | None:intergenic | 25.0% |
| ! | AAACACAAAATTAAAAGGGT+TGG | - | chr1_3:42916799-42916818 | Msa0119240:CDS | 25.0% |
| ACTTTCATTTGGAAAACACT+TGG | + | chr1_3:42914953-42914972 | None:intergenic | 30.0% | |
| ATCTATGATGAGTACTAGTA+TGG | - | chr1_3:42915144-42915163 | Msa0119240:intron | 30.0% | |
| TCTATGATGAGTACTAGTAT+GGG | - | chr1_3:42915145-42915164 | Msa0119240:intron | 30.0% | |
| GAAGGAAAGAACTCTATTAA+TGG | + | chr1_3:42915218-42915237 | None:intergenic | 30.0% | |
| AATTTGTATATTGCAGCTTC+TGG | - | chr1_3:42915402-42915421 | Msa0119240:intron | 30.0% | |
| TTCATGGACATTAGTACATA+GGG | + | chr1_3:42915544-42915563 | None:intergenic | 30.0% | |
| AAAGTGTGTCGAAAAAGAAT+AGG | + | chr1_3:42915671-42915690 | None:intergenic | 30.0% | |
| TGTTCAACGTTCATAACTTA+AGG | + | chr1_3:42916000-42916019 | None:intergenic | 30.0% | |
| AACCACAAATTTACTAGCTA+TGG | - | chr1_3:42916237-42916256 | Msa0119240:intron | 30.0% | |
| TTCCATAGCTAGTAAATTTG+TGG | + | chr1_3:42916242-42916261 | None:intergenic | 30.0% | |
| AAAAAGATGATAGCATGCTT+CGG | + | chr1_3:42916311-42916330 | None:intergenic | 30.0% | |
| TAAATAAGCACTCACATTTC+AGG | + | chr1_3:42916400-42916419 | None:intergenic | 30.0% | |
| ACATTTGATCCAAATATAGC+TGG | + | chr1_3:42916695-42916714 | None:intergenic | 30.0% | |
| ACAAATTGGGTGATGTATAA+TGG | + | chr1_3:42916841-42916860 | None:intergenic | 30.0% | |
| !! | GAGTGTTGAATTGCATATTT+AGG | + | chr1_3:42916927-42916946 | None:intergenic | 30.0% |
| !!! | TTCATTGGTACTAGTTTTGT+CGG | + | chr1_3:42916966-42916985 | None:intergenic | 30.0% |
| ! | TGAATTCCTGAAGTTTTCTT+GGG | + | chr1_3:42916998-42917017 | None:intergenic | 30.0% |
| ! | TTGAATTCCTGAAGTTTTCT+TGG | + | chr1_3:42916999-42917018 | None:intergenic | 30.0% |
| ACTTTCATTTGGAAAACACT+TGG | + | chr1_3:42914953-42914972 | None:intergenic | 30.0% | |
| ATCTATGATGAGTACTAGTA+TGG | - | chr1_3:42915144-42915163 | Msa0119240:intron | 30.0% | |
| TCTATGATGAGTACTAGTAT+GGG | - | chr1_3:42915145-42915164 | Msa0119240:intron | 30.0% | |
| GAAGGAAAGAACTCTATTAA+TGG | + | chr1_3:42915218-42915237 | None:intergenic | 30.0% | |
| AATTTGTATATTGCAGCTTC+TGG | - | chr1_3:42915402-42915421 | Msa0119240:intron | 30.0% | |
| TTCATGGACATTAGTACATA+GGG | + | chr1_3:42915544-42915563 | None:intergenic | 30.0% | |
| AAAGTGTGTCGAAAAAGAAT+AGG | + | chr1_3:42915671-42915690 | None:intergenic | 30.0% | |
| TGTTCAACGTTCATAACTTA+AGG | + | chr1_3:42916000-42916019 | None:intergenic | 30.0% | |
| AACCACAAATTTACTAGCTA+TGG | - | chr1_3:42916237-42916256 | Msa0119240:intron | 30.0% | |
| TTCCATAGCTAGTAAATTTG+TGG | + | chr1_3:42916242-42916261 | None:intergenic | 30.0% | |
| AAAAAGATGATAGCATGCTT+CGG | + | chr1_3:42916311-42916330 | None:intergenic | 30.0% | |
| TAAATAAGCACTCACATTTC+AGG | + | chr1_3:42916400-42916419 | None:intergenic | 30.0% | |
| ACATTTGATCCAAATATAGC+TGG | + | chr1_3:42916695-42916714 | None:intergenic | 30.0% | |
| ACAAATTGGGTGATGTATAA+TGG | + | chr1_3:42916841-42916860 | None:intergenic | 30.0% | |
| !! | GAGTGTTGAATTGCATATTT+AGG | + | chr1_3:42916927-42916946 | None:intergenic | 30.0% |
| !!! | TTCATTGGTACTAGTTTTGT+CGG | + | chr1_3:42916966-42916985 | None:intergenic | 30.0% |
| ! | TGAATTCCTGAAGTTTTCTT+GGG | + | chr1_3:42916998-42917017 | None:intergenic | 30.0% |
| ! | TTGAATTCCTGAAGTTTTCT+TGG | + | chr1_3:42916999-42917018 | None:intergenic | 30.0% |
| ! | CCTGTAATGTAATTTGCACA+TGG | + | chr1_3:42915067-42915086 | None:intergenic | 35.0% |
| CCATGTGCAAATTACATTAC+AGG | - | chr1_3:42915064-42915083 | Msa0119240:CDS | 35.0% | |
| !! | ACAGGAAGCACCAATTATAA+TGG | - | chr1_3:42915082-42915101 | Msa0119240:CDS | 35.0% |
| GAATCACAACAACTACTTGA+TGG | + | chr1_3:42915118-42915137 | None:intergenic | 35.0% | |
| ! | TTAATGGGTGGTAGTTGAAA+TGG | + | chr1_3:42915202-42915221 | None:intergenic | 35.0% |
| GAAAGAACTCTATTAATGGG+TGG | + | chr1_3:42915214-42915233 | None:intergenic | 35.0% | |
| TAATAATAAGTACCTGGAGC+TGG | + | chr1_3:42915438-42915457 | None:intergenic | 35.0% | |
| ACATTAGTACATAGGGATTG+AGG | + | chr1_3:42915537-42915556 | None:intergenic | 35.0% | |
| CTTCATGGACATTAGTACAT+AGG | + | chr1_3:42915545-42915564 | None:intergenic | 35.0% | |
| !! | AAGTTCAGTTGATAGCTTCA+TGG | + | chr1_3:42915560-42915579 | None:intergenic | 35.0% |
| ! | GCTATCATCTTTTTATGCCA+TGG | - | chr1_3:42916317-42916336 | Msa0119240:intron | 35.0% |
| ! | ATTTTCTTTGGCATAAGCCA+TGG | + | chr1_3:42916337-42916356 | None:intergenic | 35.0% |
| ! | GGTCAACATTGGATTTTCTT+TGG | + | chr1_3:42916349-42916368 | None:intergenic | 35.0% |
| CACAAATTCATGGTCAACAT+TGG | + | chr1_3:42916360-42916379 | None:intergenic | 35.0% | |
| ! | ATATCTGAGACCATCTATGA+TGG | + | chr1_3:42916464-42916483 | None:intergenic | 35.0% |
| ! | CCTGTAATGTAATTTGCACA+TGG | + | chr1_3:42915067-42915086 | None:intergenic | 35.0% |
| CCATGTGCAAATTACATTAC+AGG | - | chr1_3:42915064-42915083 | Msa0119240:CDS | 35.0% | |
| !! | ACAGGAAGCACCAATTATAA+TGG | - | chr1_3:42915082-42915101 | Msa0119240:CDS | 35.0% |
| GAATCACAACAACTACTTGA+TGG | + | chr1_3:42915118-42915137 | None:intergenic | 35.0% | |
| ! | TTAATGGGTGGTAGTTGAAA+TGG | + | chr1_3:42915202-42915221 | None:intergenic | 35.0% |
| GAAAGAACTCTATTAATGGG+TGG | + | chr1_3:42915214-42915233 | None:intergenic | 35.0% | |
| TAATAATAAGTACCTGGAGC+TGG | + | chr1_3:42915438-42915457 | None:intergenic | 35.0% | |
| ACATTAGTACATAGGGATTG+AGG | + | chr1_3:42915537-42915556 | None:intergenic | 35.0% | |
| CTTCATGGACATTAGTACAT+AGG | + | chr1_3:42915545-42915564 | None:intergenic | 35.0% | |
| !! | AAGTTCAGTTGATAGCTTCA+TGG | + | chr1_3:42915560-42915579 | None:intergenic | 35.0% |
| ! | GCTATCATCTTTTTATGCCA+TGG | - | chr1_3:42916317-42916336 | Msa0119240:intron | 35.0% |
| ! | ATTTTCTTTGGCATAAGCCA+TGG | + | chr1_3:42916337-42916356 | None:intergenic | 35.0% |
| ! | GGTCAACATTGGATTTTCTT+TGG | + | chr1_3:42916349-42916368 | None:intergenic | 35.0% |
| CACAAATTCATGGTCAACAT+TGG | + | chr1_3:42916360-42916379 | None:intergenic | 35.0% | |
| ! | ATATCTGAGACCATCTATGA+TGG | + | chr1_3:42916464-42916483 | None:intergenic | 35.0% |
| ACAGATTAGTACACCTTGCA+CGG | - | chr1_3:42915018-42915037 | Msa0119240:CDS | 40.0% | |
| TGGTAGTTGAAATGGAACGT+TGG | + | chr1_3:42915194-42915213 | None:intergenic | 40.0% | |
| ATTGTGCATGGAATCCATTC+AGG | + | chr1_3:42915261-42915280 | None:intergenic | 40.0% | |
| CACACTGTCTCACAAATTCA+TGG | + | chr1_3:42916370-42916389 | None:intergenic | 40.0% | |
| TAAGCACTCACATTTCAGGA+GGG | + | chr1_3:42916396-42916415 | None:intergenic | 40.0% | |
| ATAAGCACTCACATTTCAGG+AGG | + | chr1_3:42916397-42916416 | None:intergenic | 40.0% | |
| CCAACAAAAGCAATGGAAAG+AGG | + | chr1_3:42916667-42916686 | None:intergenic | 40.0% | |
| !! | CCTCTTTCCATTGCTTTTGT+TGG | - | chr1_3:42916664-42916683 | Msa0119240:intron | 40.0% |
| !! | TTTCCATTGCTTTTGTTGGC+AGG | - | chr1_3:42916668-42916687 | Msa0119240:intron | 40.0% |
| !! | AAGGGAGAAGCATTAATTGG+CGG | + | chr1_3:42916728-42916747 | None:intergenic | 40.0% |
| !! | CTCAAGGGAGAAGCATTAAT+TGG | + | chr1_3:42916731-42916750 | None:intergenic | 40.0% |
| TATTTACCTTGCGGACTCAA+GGG | + | chr1_3:42916746-42916765 | None:intergenic | 40.0% | |
| ATATTTACCTTGCGGACTCA+AGG | + | chr1_3:42916747-42916766 | None:intergenic | 40.0% | |
| TGCAATTCAACACTCAGCAA+AGG | - | chr1_3:42916932-42916951 | Msa0119240:CDS | 40.0% | |
| ACAGATTAGTACACCTTGCA+CGG | - | chr1_3:42915018-42915037 | Msa0119240:CDS | 40.0% | |
| TGGTAGTTGAAATGGAACGT+TGG | + | chr1_3:42915194-42915213 | None:intergenic | 40.0% | |
| ATTGTGCATGGAATCCATTC+AGG | + | chr1_3:42915261-42915280 | None:intergenic | 40.0% | |
| CACACTGTCTCACAAATTCA+TGG | + | chr1_3:42916370-42916389 | None:intergenic | 40.0% | |
| TAAGCACTCACATTTCAGGA+GGG | + | chr1_3:42916396-42916415 | None:intergenic | 40.0% | |
| ATAAGCACTCACATTTCAGG+AGG | + | chr1_3:42916397-42916416 | None:intergenic | 40.0% | |
| CCAACAAAAGCAATGGAAAG+AGG | + | chr1_3:42916667-42916686 | None:intergenic | 40.0% | |
| !! | CCTCTTTCCATTGCTTTTGT+TGG | - | chr1_3:42916664-42916683 | Msa0119240:intron | 40.0% |
| !! | TTTCCATTGCTTTTGTTGGC+AGG | - | chr1_3:42916668-42916687 | Msa0119240:intron | 40.0% |
| !! | AAGGGAGAAGCATTAATTGG+CGG | + | chr1_3:42916728-42916747 | None:intergenic | 40.0% |
| !! | CTCAAGGGAGAAGCATTAAT+TGG | + | chr1_3:42916731-42916750 | None:intergenic | 40.0% |
| TATTTACCTTGCGGACTCAA+GGG | + | chr1_3:42916746-42916765 | None:intergenic | 40.0% | |
| ATATTTACCTTGCGGACTCA+AGG | + | chr1_3:42916747-42916766 | None:intergenic | 40.0% | |
| TGCAATTCAACACTCAGCAA+AGG | - | chr1_3:42916932-42916951 | Msa0119240:CDS | 40.0% | |
| CTAATCATAGAAGCCGTGCA+AGG | + | chr1_3:42915034-42915053 | None:intergenic | 45.0% | |
| GCATGATTGTGGAAGGAAGA+AGG | + | chr1_3:42915236-42915255 | None:intergenic | 45.0% | |
| ! | TCAGGTTGCATGATTGTGGA+AGG | + | chr1_3:42915243-42915262 | None:intergenic | 45.0% |
| !! | CCATTCAGGTTGCATGATTG+TGG | + | chr1_3:42915247-42915266 | None:intergenic | 45.0% |
| CCACAATCATGCAACCTGAA+TGG | - | chr1_3:42915244-42915263 | Msa0119240:intron | 45.0% | |
| TGGATTCCATGCACAATGCA+AGG | - | chr1_3:42915264-42915283 | Msa0119240:CDS | 45.0% | |
| GGATTCCATGCACAATGCAA+GGG | - | chr1_3:42915265-42915284 | Msa0119240:CDS | 45.0% | |
| TAAGTACCTGGAGCTGGTAA+AGG | + | chr1_3:42915432-42915451 | None:intergenic | 45.0% | |
| GTCCAATGGCTAAACTCATG+TGG | - | chr1_3:42915486-42915505 | Msa0119240:intron | 45.0% | |
| CTCCACATGAGTTTAGCCAT+TGG | + | chr1_3:42915491-42915510 | None:intergenic | 45.0% | |
| AAGCACTCACATTTCAGGAG+GGG | + | chr1_3:42916395-42916414 | None:intergenic | 45.0% | |
| ! | TCTATGATGGCGTGGAGAAA+AGG | + | chr1_3:42916451-42916470 | None:intergenic | 45.0% |
| TTTCTCCACGCCATCATAGA+TGG | - | chr1_3:42916451-42916470 | Msa0119240:intron | 45.0% | |
| ACATGCTCAACGTTGAGTTC+TGG | - | chr1_3:42916583-42916602 | Msa0119240:intron | 45.0% | |
| TTGGCAGGTCCAGCTATATT+TGG | - | chr1_3:42916683-42916702 | Msa0119240:intron | 45.0% | |
| CATTAATTGGCGGAAGAGAC+GGG | + | chr1_3:42916718-42916737 | None:intergenic | 45.0% | |
| GCATTAATTGGCGGAAGAGA+CGG | + | chr1_3:42916719-42916738 | None:intergenic | 45.0% | |
| TAGTCGCCCAAGAAAACTTC+AGG | - | chr1_3:42916989-42917008 | Msa0119240:CDS | 45.0% | |
| CTAATCATAGAAGCCGTGCA+AGG | + | chr1_3:42915034-42915053 | None:intergenic | 45.0% | |
| GCATGATTGTGGAAGGAAGA+AGG | + | chr1_3:42915236-42915255 | None:intergenic | 45.0% | |
| ! | TCAGGTTGCATGATTGTGGA+AGG | + | chr1_3:42915243-42915262 | None:intergenic | 45.0% |
| !! | CCATTCAGGTTGCATGATTG+TGG | + | chr1_3:42915247-42915266 | None:intergenic | 45.0% |
| CCACAATCATGCAACCTGAA+TGG | - | chr1_3:42915244-42915263 | Msa0119240:intron | 45.0% | |
| TGGATTCCATGCACAATGCA+AGG | - | chr1_3:42915264-42915283 | Msa0119240:CDS | 45.0% | |
| GGATTCCATGCACAATGCAA+GGG | - | chr1_3:42915265-42915284 | Msa0119240:CDS | 45.0% | |
| TAAGTACCTGGAGCTGGTAA+AGG | + | chr1_3:42915432-42915451 | None:intergenic | 45.0% | |
| GTCCAATGGCTAAACTCATG+TGG | - | chr1_3:42915486-42915505 | Msa0119240:intron | 45.0% | |
| CTCCACATGAGTTTAGCCAT+TGG | + | chr1_3:42915491-42915510 | None:intergenic | 45.0% | |
| AAGCACTCACATTTCAGGAG+GGG | + | chr1_3:42916395-42916414 | None:intergenic | 45.0% | |
| ! | TCTATGATGGCGTGGAGAAA+AGG | + | chr1_3:42916451-42916470 | None:intergenic | 45.0% |
| TTTCTCCACGCCATCATAGA+TGG | - | chr1_3:42916451-42916470 | Msa0119240:intron | 45.0% | |
| ACATGCTCAACGTTGAGTTC+TGG | - | chr1_3:42916583-42916602 | Msa0119240:intron | 45.0% | |
| TTGGCAGGTCCAGCTATATT+TGG | - | chr1_3:42916683-42916702 | Msa0119240:intron | 45.0% | |
| CATTAATTGGCGGAAGAGAC+GGG | + | chr1_3:42916718-42916737 | None:intergenic | 45.0% | |
| GCATTAATTGGCGGAAGAGA+CGG | + | chr1_3:42916719-42916738 | None:intergenic | 45.0% | |
| TAGTCGCCCAAGAAAACTTC+AGG | - | chr1_3:42916989-42917008 | Msa0119240:CDS | 45.0% | |
| GTGTACCCTTGCATTGTGCA+TGG | + | chr1_3:42915273-42915292 | None:intergenic | 50.0% | |
| ! | TGAGACCATCTATGATGGCG+TGG | + | chr1_3:42916459-42916478 | None:intergenic | 50.0% |
| GGACCTGCCAACAAAAGCAA+TGG | + | chr1_3:42916674-42916693 | None:intergenic | 50.0% | |
| CGCAGTAGATGAAACCATCG+AGG | - | chr1_3:42916890-42916909 | Msa0119240:CDS | 50.0% | |
| AGGAGAATCAGCTACCTCGA+TGG | + | chr1_3:42916907-42916926 | None:intergenic | 50.0% | |
| !!! | GGTACTAGTTTTGTCGGTGC+TGG | + | chr1_3:42916960-42916979 | None:intergenic | 50.0% |
| CTTGGGCGACTATGCTTCAT+TGG | + | chr1_3:42916981-42917000 | None:intergenic | 50.0% | |
| GTGTACCCTTGCATTGTGCA+TGG | + | chr1_3:42915273-42915292 | None:intergenic | 50.0% | |
| ! | TGAGACCATCTATGATGGCG+TGG | + | chr1_3:42916459-42916478 | None:intergenic | 50.0% |
| GGACCTGCCAACAAAAGCAA+TGG | + | chr1_3:42916674-42916693 | None:intergenic | 50.0% | |
| CGCAGTAGATGAAACCATCG+AGG | - | chr1_3:42916890-42916909 | Msa0119240:CDS | 50.0% | |
| AGGAGAATCAGCTACCTCGA+TGG | + | chr1_3:42916907-42916926 | None:intergenic | 50.0% | |
| !!! | GGTACTAGTTTTGTCGGTGC+TGG | + | chr1_3:42916960-42916979 | None:intergenic | 50.0% |
| CTTGGGCGACTATGCTTCAT+TGG | + | chr1_3:42916981-42917000 | None:intergenic | 50.0% | |
| GGCTCTCCTTTACCAGCTCC+AGG | - | chr1_3:42915423-42915442 | Msa0119240:intron | 60.0% | |
| GCTTCTCCCTTGAGTCCGCA+AGG | - | chr1_3:42916737-42916756 | Msa0119240:CDS | 60.0% | |
| GGCTCTCCTTTACCAGCTCC+AGG | - | chr1_3:42915423-42915442 | Msa0119240:intron | 60.0% | |
| GCTTCTCCCTTGAGTCCGCA+AGG | - | chr1_3:42916737-42916756 | Msa0119240:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 42914936 | 42917083 | 42914936 | ID=Msa0119240;Name=Msa0119240 |
| chr1_3 | mRNA | 42914936 | 42917083 | 42914936 | ID=Msa0119240-mRNA-1;Parent=Msa0119240;Name=Msa0119240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=5|1|1|1|1|1|4|58|190 |
| chr1_3 | exon | 42914936 | 42915124 | 42914936 | ID=Msa0119240-mRNA-1:exon:12930;Parent=Msa0119240-mRNA-1 |
| chr1_3 | exon | 42915261 | 42915329 | 42915261 | ID=Msa0119240-mRNA-1:exon:12929;Parent=Msa0119240-mRNA-1 |
| chr1_3 | exon | 42916575 | 42916601 | 42916575 | ID=Msa0119240-mRNA-1:exon:12928;Parent=Msa0119240-mRNA-1 |
| chr1_3 | exon | 42916733 | 42917083 | 42916733 | ID=Msa0119240-mRNA-1:exon:12927;Parent=Msa0119240-mRNA-1 |
| chr1_3 | five_prime_UTR | 42917079 | 42917083 | 42917079 | ID=Msa0119240-mRNA-1:five_prime_utr;Parent=Msa0119240-mRNA-1 |
| chr1_3 | CDS | 42916733 | 42917078 | 42916733 | ID=Msa0119240-mRNA-1:cds;Parent=Msa0119240-mRNA-1 |
| chr1_3 | CDS | 42916575 | 42916601 | 42916575 | ID=Msa0119240-mRNA-1:cds;Parent=Msa0119240-mRNA-1 |
| chr1_3 | CDS | 42915261 | 42915329 | 42915261 | ID=Msa0119240-mRNA-1:cds;Parent=Msa0119240-mRNA-1 |
| chr1_3 | CDS | 42914994 | 42915124 | 42914994 | ID=Msa0119240-mRNA-1:cds;Parent=Msa0119240-mRNA-1 |
| chr1_3 | three_prime_UTR | 42914936 | 42914993 | 42914936 | ID=Msa0119240-mRNA-1:three_prime_utr;Parent=Msa0119240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
