Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078360 | sp|Q9FHY8|HLB1_ARATH | 78.729 | 362 | 76 | 1 | 18 | 378 | 204 | 565 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078360 | A0A072VLP9 | 97.784 | 361 | 8 | 0 | 18 | 378 | 160 | 520 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032810 | Msa0078360 | 0.803559 | 3.290773e-49 | -8.615850e-47 |
| Msa0037410 | Msa0078360 | 0.814330 | 1.628019e-51 | -8.615850e-47 |
| Msa0078360 | Msa0126160 | 0.837119 | 6.271126e-57 | -8.615850e-47 |
| Msa0078360 | Msa0178120 | 0.800420 | 1.453320e-48 | -8.615850e-47 |
| Msa0078360 | Msa0230520 | 0.805608 | 1.229590e-49 | -8.615850e-47 |
| Msa0078360 | Msa0301520 | 0.816171 | 6.345393e-52 | -8.615850e-47 |
| Msa0078360 | Msa0339020 | 0.810225 | 1.281297e-50 | -8.615850e-47 |
| Msa0078360 | Msa0534750 | 0.830334 | 3.114608e-55 | -8.615850e-47 |
| Msa0078360 | Msa0593700 | 0.805998 | 1.018087e-49 | -8.615850e-47 |
| Msa0078360 | Msa0633570 | 0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0078360 | Msa1043630 | 0.801331 | 9.471110e-49 | -8.615850e-47 |
| Msa0078360 | Msa1078890 | 0.807008 | 6.233060e-50 | -8.615850e-47 |
| Msa0078360 | Msa1145240 | 0.816011 | 6.889483e-52 | -8.615850e-47 |
| Msa0078360 | Msa1373170 | 0.821196 | 4.591009e-53 | -8.615850e-47 |
| Msa0078360 | Msa1418500 | 0.807666 | 4.522028e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078360 | MtrunA17_Chr1g0189021 | 97.784 | 361 | 8 | 0 | 18 | 378 | 160 | 520 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078360 | AT5G41950.1 | 78.729 | 362 | 76 | 1 | 18 | 378 | 204 | 565 | 0.0 | 603 |
Find 95 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTAAATATCCAACTTTA+AGG | 0.206145 | 1_2:-55808492 | None:intergenic |
| TGGCTTCTTACTGAATAATT+TGG | 0.228506 | 1_2:-55807815 | None:intergenic |
| TATTTCAGGCGCTTAATAAC+TGG | 0.247515 | 1_2:+55805547 | Msa0078360:intron |
| CTCAATTTGACAGACCAAAT+TGG | 0.255916 | 1_2:-55809694 | None:intergenic |
| TGTTAATTGTATTACCAATT+TGG | 0.257312 | 1_2:+55809680 | Msa0078360:three_prime_UTR |
| CACCGGGCAATTTACAATCT+TGG | 0.286151 | 1_2:+55807544 | Msa0078360:CDS |
| TACAGTGCATCATAATCTTC+AGG | 0.287071 | 1_2:-55802567 | None:intergenic |
| TCTTATAAAATATGAATTAT+CGG | 0.315234 | 1_2:-55809851 | None:intergenic |
| TAACTGGGGACTTGCGCTTC+AGG | 0.345281 | 1_2:+55805563 | Msa0078360:CDS |
| TGCTGACTCTTGGGAATCAT+TGG | 0.349651 | 1_2:+55809562 | Msa0078360:CDS |
| TTACAATCTTGGAACTGTTC+TGG | 0.353539 | 1_2:+55807555 | Msa0078360:CDS |
| ATTATGATGCACTGTACAAT+TGG | 0.360131 | 1_2:+55802574 | Msa0078360:CDS |
| CTGACTTTGCCACCTGGTGC+TGG | 0.360992 | 1_2:+55808860 | Msa0078360:CDS |
| GATTGGCTGTACAATTCATT+TGG | 0.366257 | 1_2:-55807758 | None:intergenic |
| CAATTGGGCATTGGTACTTC+AGG | 0.369935 | 1_2:+55802590 | Msa0078360:CDS |
| TTAGAAGGTGAAGTGGAATC+TGG | 0.383082 | 1_2:-55804080 | None:intergenic |
| AATCCACGACATTTAATAGA+TGG | 0.401089 | 1_2:-55809825 | None:intergenic |
| GCAGAGGACACTTTAAGAAC+AGG | 0.403120 | 1_2:+55807707 | Msa0078360:CDS |
| TGCTTGCCTCTGTTCAACTC+TGG | 0.404309 | 1_2:-55808735 | None:intergenic |
| TTATCAAGGTTGCTGACTCT+TGG | 0.405651 | 1_2:+55809552 | Msa0078360:intron |
| CTTGCGGTTGGTACGATCTA+TGG | 0.407275 | 1_2:+55808033 | Msa0078360:CDS |
| TTAAAGCAGTCCAACTCAAC+TGG | 0.408233 | 1_2:+55805311 | Msa0078360:CDS |
| GTATCCAGGCTTACTACAAT+TGG | 0.408555 | 1_2:+55804975 | Msa0078360:intron |
| ATTCATGGCATCTCCTGATC+TGG | 0.410632 | 1_2:-55808774 | None:intergenic |
| TCAAGCAGAGCATCTTTAGA+AGG | 0.411824 | 1_2:-55804095 | None:intergenic |
| CAAAGTCTCTCAACCAGATC+AGG | 0.413385 | 1_2:+55808761 | Msa0078360:CDS |
| TATCAAGGTTGCTGACTCTT+GGG | 0.414988 | 1_2:+55809553 | Msa0078360:intron |
| CTCTGCATTGATACAGTTCA+TGG | 0.422436 | 1_2:+55808884 | Msa0078360:CDS |
| AGCTGAAGAGCTATGGAAAC+AGG | 0.425760 | 1_2:+55805045 | Msa0078360:CDS |
| GTATTGGCGGGTATTATAAC+AGG | 0.435968 | 1_2:+55809644 | Msa0078360:CDS |
| CCGCTACCACACCTTAAAGT+TGG | 0.441526 | 1_2:+55808481 | Msa0078360:CDS |
| GATCAGGAGATGCCATGAAT+GGG | 0.443681 | 1_2:+55808777 | Msa0078360:CDS |
| GGAATCATTGGATGGATGGC+TGG | 0.453718 | 1_2:+55809574 | Msa0078360:CDS |
| AGATCAGGAGATGCCATGAA+TGG | 0.456962 | 1_2:+55808776 | Msa0078360:CDS |
| TATTTAACCGCACCTCCTGC+GGG | 0.458286 | 1_2:+55808505 | Msa0078360:CDS |
| GATCGTTTCCAGTCATTATG+AGG | 0.464366 | 1_2:-55808541 | None:intergenic |
| AGTTCATGGATCAGTTTACT+TGG | 0.466595 | 1_2:+55808898 | Msa0078360:CDS |
| ACTCAACTGGAACAGTCCTC+AGG | 0.484214 | 1_2:+55805324 | Msa0078360:CDS |
| AGTTGCAATTTGATTTCCAC+CGG | 0.493039 | 1_2:+55807527 | Msa0078360:CDS |
| ATATTTAACCGCACCTCCTG+CGG | 0.501162 | 1_2:+55808504 | Msa0078360:CDS |
| GCTTGCCTCTGTTCAACTCT+GGG | 0.504813 | 1_2:-55808734 | None:intergenic |
| CAAAGGAAGCTGAAGAGCTA+TGG | 0.504826 | 1_2:+55805038 | Msa0078360:CDS |
| GGATCACGAAAAGCTTCAGC+AGG | 0.507858 | 1_2:+55808576 | Msa0078360:CDS |
| CTTGGGAATCATTGGATGGA+TGG | 0.512023 | 1_2:+55809570 | Msa0078360:CDS |
| CTGCAATATATATTGCAGAT+TGG | 0.512331 | 1_2:-55807775 | None:intergenic |
| ACAGTGCATCATAATCTTCA+GGG | 0.517083 | 1_2:-55802566 | None:intergenic |
| TTCCAAGATTGTAAATTGCC+CGG | 0.521530 | 1_2:-55807546 | None:intergenic |
| GCTGATCTGACTTTGCCACC+TGG | 0.523003 | 1_2:+55808854 | Msa0078360:CDS |
| GAGGACTGTTCCAGTTGAGT+TGG | 0.523242 | 1_2:-55805321 | None:intergenic |
| AGTTCGCAAAGAAGTGCAAA+AGG | 0.525716 | 1_2:-55809734 | None:intergenic |
| GAAATCAAATTGCAACTGTA+TGG | 0.525917 | 1_2:-55807521 | None:intergenic |
| TATCCAGGCTTACTACAATT+GGG | 0.527161 | 1_2:+55804976 | Msa0078360:intron |
| ATTTCAGGCGCTTAATAACT+GGG | 0.531527 | 1_2:+55805548 | Msa0078360:intron |
| TTATGATGCACTGTACAATT+GGG | 0.539658 | 1_2:+55802575 | Msa0078360:CDS |
| TAGCCATCTATTAAATGTCG+TGG | 0.545540 | 1_2:+55809822 | Msa0078360:three_prime_UTR |
| GACTCTTGGGAATCATTGGA+TGG | 0.547060 | 1_2:+55809566 | Msa0078360:CDS |
| TAGTTGCACCTCATAATGAC+TGG | 0.549693 | 1_2:+55808533 | Msa0078360:CDS |
| CAGAGGACACTTTAAGAACA+GGG | 0.561148 | 1_2:+55807708 | Msa0078360:CDS |
| GCGAGGCAAAAGTGATGTAT+TGG | 0.562011 | 1_2:+55809628 | Msa0078360:CDS |
| GGCAAAAGTGATGTATTGGC+GGG | 0.563534 | 1_2:+55809632 | Msa0078360:CDS |
| TTCTAAAGATGCTCTGCTTG+AGG | 0.564390 | 1_2:+55804097 | Msa0078360:CDS |
| ATTGCAACTGTATGGCTGAA+CGG | 0.567248 | 1_2:-55807513 | None:intergenic |
| AGGCAAAAGTGATGTATTGG+CGG | 0.568848 | 1_2:+55809631 | Msa0078360:CDS |
| GCTCTTCAGCTTCCTTTGTG+CGG | 0.573547 | 1_2:-55805033 | None:intergenic |
| AGCATCTTTAGAAGGTGAAG+TGG | 0.579092 | 1_2:-55804087 | None:intergenic |
| GTCTACACTATTTATGTGCG+AGG | 0.583038 | 1_2:+55809611 | Msa0078360:CDS |
| AGATGGCTAATGAGCAAACT+CGG | 0.583792 | 1_2:-55809808 | None:intergenic |
| CATCATGTAGTGTGGGACAA+AGG | 0.588356 | 1_2:-55804151 | None:intergenic |
| CTTACATACATCATGTAGTG+TGG | 0.595760 | 1_2:-55804159 | None:intergenic |
| AAATATCCAACTTTAAGGTG+TGG | 0.603114 | 1_2:-55808487 | None:intergenic |
| TCAATGCAGAGGCCAGCACC+AGG | 0.604478 | 1_2:-55808872 | None:intergenic |
| TTTAACCGCACCTCCTGCGG+GGG | 0.615781 | 1_2:+55808507 | Msa0078360:CDS |
| CCAACTTTAAGGTGTGGTAG+CGG | 0.619422 | 1_2:-55808481 | None:intergenic |
| ATATAGCAGTGCCTTGCGGT+TGG | 0.626613 | 1_2:+55808021 | Msa0078360:CDS |
| TTACATACATCATGTAGTGT+GGG | 0.629806 | 1_2:-55804158 | None:intergenic |
| GGTATGCTGCTGCTATTGAG+AGG | 0.640973 | 1_2:+55802541 | Msa0078360:CDS |
| TGCACTGTACAATTGGGCAT+TGG | 0.643214 | 1_2:+55802581 | Msa0078360:CDS |
| ATCAGGAGATGCCATGAATG+GGG | 0.644427 | 1_2:+55808778 | Msa0078360:CDS |
| ATTTAACCGCACCTCCTGCG+GGG | 0.650150 | 1_2:+55808506 | Msa0078360:CDS |
| GAGGACACTTTAAGAACAGG+GGG | 0.652005 | 1_2:+55807710 | Msa0078360:CDS |
| CATGAACTGTATCAATGCAG+AGG | 0.654472 | 1_2:-55808883 | None:intergenic |
| TGTACGAACTGCTATCAGCA+AGG | 0.656315 | 1_2:+55807374 | Msa0078360:CDS |
| CATAGATCGTACCAACCGCA+AGG | 0.665616 | 1_2:-55808032 | None:intergenic |
| GTTGCAATTTGATTTCCACC+GGG | 0.682764 | 1_2:+55807528 | Msa0078360:CDS |
| TCTGATCGTGCAAAGATGCG+AGG | 0.685281 | 1_2:+55805010 | Msa0078360:CDS |
| AAAGATGCGAGGCCGCACAA+AGG | 0.686655 | 1_2:+55805021 | Msa0078360:CDS |
| TTTACAGTACGGATTAGCAG+AGG | 0.686728 | 1_2:+55807691 | Msa0078360:intron |
| ATGCAGAGGCCAGCACCAGG+TGG | 0.687236 | 1_2:-55808869 | None:intergenic |
| TTTCAGGCGCTTAATAACTG+GGG | 0.688105 | 1_2:+55805549 | Msa0078360:intron |
| AGGTATATAGCAGTGCCTTG+CGG | 0.692086 | 1_2:+55808017 | Msa0078360:intron |
| TAGTGTGGGACAAAGGCGAG+TGG | 0.693067 | 1_2:-55804144 | None:intergenic |
| CAAGATTGTAAATTGCCCGG+TGG | 0.696463 | 1_2:-55807543 | None:intergenic |
| AGAGGACACTTTAAGAACAG+GGG | 0.707286 | 1_2:+55807709 | Msa0078360:CDS |
| AGGTACCCAGAGTTGAACAG+AGG | 0.741985 | 1_2:+55808729 | Msa0078360:intron |
| AGGACACTTTAAGAACAGGG+GGG | 0.806890 | 1_2:+55807711 | Msa0078360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTAATTTAAATTT+TGG | - | chr1_2:55808691-55808710 | None:intergenic | 0.0% |
| !! | TTATATTCATATTTATATTC+TGG | - | chr1_2:55804311-55804330 | None:intergenic | 10.0% |
| !!! | TTTTTCAAATTATTATCAAA+TGG | - | chr1_2:55804629-55804648 | None:intergenic | 10.0% |
| !!! | ATATGATTTTAATTTTTAAG+TGG | + | chr1_2:55804667-55804686 | Msa0078360:intron | 10.0% |
| !! | AAAATTTAACAAAAATTAGA+TGG | - | chr1_2:55805264-55805283 | None:intergenic | 10.0% |
| !!! | AAACTTATAATTTTCTTACT+TGG | + | chr1_2:55802510-55802529 | Msa0078360:CDS | 15.0% |
| !!! | GTATTTTATTAGAAAACATA+GGG | - | chr1_2:55803796-55803815 | None:intergenic | 15.0% |
| !!! | TCATTTACAACTTTAATTTT+AGG | - | chr1_2:55804234-55804253 | None:intergenic | 15.0% |
| !! | TTTCAAGATTGAAATATATT+GGG | - | chr1_2:55804501-55804520 | None:intergenic | 15.0% |
| !! | ATTTCAAGATTGAAATATAT+TGG | - | chr1_2:55804502-55804521 | None:intergenic | 15.0% |
| !! | ATATATTTCAATCTTGAAAT+TGG | + | chr1_2:55804502-55804521 | Msa0078360:intron | 15.0% |
| !! | AAATTATTATCAAATGGAAT+GGG | - | chr1_2:55804623-55804642 | None:intergenic | 15.0% |
| !!! | TTAGTTGATTAATTTGAATT+TGG | - | chr1_2:55804858-55804877 | None:intergenic | 15.0% |
| !! | AAAATGAAAAATAGTAAAAC+AGG | - | chr1_2:55805966-55805985 | None:intergenic | 15.0% |
| !! | ATTATTATTATTATGCTCAT+CGG | + | chr1_2:55806492-55806511 | Msa0078360:intron | 15.0% |
| !!! | TTATAATCCTTATAATCTTT+TGG | + | chr1_2:55806627-55806646 | Msa0078360:intron | 15.0% |
| !!! | TATATAACATAGTTTTACTT+TGG | + | chr1_2:55806865-55806884 | Msa0078360:intron | 15.0% |
| !! | AAAAAATATTGAGAATTCTT+TGG | + | chr1_2:55806995-55807014 | Msa0078360:intron | 15.0% |
| !! | TATAAAGTACAATATTTGAA+GGG | - | chr1_2:55807240-55807259 | None:intergenic | 15.0% |
| !! | TTATAAAGTACAATATTTGA+AGG | - | chr1_2:55807241-55807260 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATTCAATTTGT+CGG | - | chr1_2:55808608-55808627 | None:intergenic | 15.0% |
| !!! | ACAAATTGAATTTTTTTAAG+AGG | + | chr1_2:55808608-55808627 | Msa0078360:intron | 15.0% |
| !!! | TTTTATAATGAAAAAGTTCA+TGG | - | chr1_2:55809068-55809087 | None:intergenic | 15.0% |
| !! | AATAAATTGTCAACTTTAAT+TGG | + | chr1_2:55809210-55809229 | Msa0078360:intron | 15.0% |
| !!! | AGAACAATTTTTAATTACAT+TGG | - | chr1_2:55809399-55809418 | None:intergenic | 15.0% |
| !! | TTTATAATCTTACTAAAACT+TGG | - | chr1_2:55809429-55809448 | None:intergenic | 15.0% |
| !!! | AAGTTTTAGTAAGATTATAA+AGG | + | chr1_2:55809428-55809447 | Msa0078360:intron | 15.0% |
| !!! | AGTTTTAGTAAGATTATAAA+GGG | + | chr1_2:55809429-55809448 | Msa0078360:intron | 15.0% |
| !!! | TAATTTTCATTTTTGTACAT+TGG | + | chr1_2:55809528-55809547 | Msa0078360:intron | 15.0% |
| !!! | TATTTTTTTGTTAGAACACT+TGG | + | chr1_2:55802698-55802717 | Msa0078360:intron | 20.0% |
| !! | TATAATTTCATTTGAGAGTT+GGG | + | chr1_2:55802863-55802882 | Msa0078360:intron | 20.0% |
| !! | ATCTTGTATTCAATAGTAAT+TGG | - | chr1_2:55803115-55803134 | None:intergenic | 20.0% |
| !! | CTACAAATAATTAGGTAAAA+AGG | + | chr1_2:55803628-55803647 | Msa0078360:intron | 20.0% |
| !!! | GGTATTTTATTAGAAAACAT+AGG | - | chr1_2:55803797-55803816 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTACATAAGTAC+AGG | + | chr1_2:55803861-55803880 | Msa0078360:intron | 20.0% |
| !!! | TTTTACATATGAAAAATCCT+TGG | + | chr1_2:55803960-55803979 | Msa0078360:intron | 20.0% |
| !!! | TCATTTAAGATTTTCTTTAG+TGG | - | chr1_2:55804347-55804366 | None:intergenic | 20.0% |
| !! | ACTAAAGAAAATCTTAAATG+AGG | + | chr1_2:55804346-55804365 | Msa0078360:intron | 20.0% |
| !! | CTAAAGAAAATCTTAAATGA+GGG | + | chr1_2:55804347-55804366 | Msa0078360:intron | 20.0% |
| !! | TTCAAGATTGAAATATATTG+GGG | - | chr1_2:55804500-55804519 | None:intergenic | 20.0% |
| !! | AAAATATGTATTACAGATGT+AGG | + | chr1_2:55804534-55804553 | Msa0078360:intron | 20.0% |
| !! | CAAATTATTATCAAATGGAA+TGG | - | chr1_2:55804624-55804643 | None:intergenic | 20.0% |
| !! | TGTAACAAACATCATTTAAT+AGG | - | chr1_2:55805182-55805201 | None:intergenic | 20.0% |
| !! | GAATTCATATTGAATTTGAA+TGG | + | chr1_2:55805207-55805226 | Msa0078360:intron | 20.0% |
| !!! | TGTTAAATTTTTTTTTTCCC+AGG | + | chr1_2:55805273-55805292 | Msa0078360:intron | 20.0% |
| !! | TGATAAAGCAAATATTTACT+GGG | - | chr1_2:55805432-55805451 | None:intergenic | 20.0% |
| !! | ATGATAAAGCAAATATTTAC+TGG | - | chr1_2:55805433-55805452 | None:intergenic | 20.0% |
| !! | GTGAAACAAAATATATTGAA+CGG | - | chr1_2:55806312-55806331 | None:intergenic | 20.0% |
| !!! | ACATTTCAAGATTTTAAAAC+TGG | - | chr1_2:55806544-55806563 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATAGGATTTTTT+TGG | - | chr1_2:55806699-55806718 | None:intergenic | 20.0% |
| !!! | TTTTTTGACCAAATTTTACA+TGG | - | chr1_2:55806939-55806958 | None:intergenic | 20.0% |
| !!! | TACCATAACAAAAGTTTTAT+AGG | - | chr1_2:55807039-55807058 | None:intergenic | 20.0% |
| !!! | TACCATAACTAAAGTTTTAT+AGG | - | chr1_2:55807084-55807103 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGTAAATTACA+AGG | + | chr1_2:55807091-55807110 | Msa0078360:intron | 20.0% |
| !! | AATGTTATCATATGACTAAA+AGG | - | chr1_2:55807197-55807216 | None:intergenic | 20.0% |
| !! | ATAAAGTACAATATTTGAAG+GGG | - | chr1_2:55807239-55807258 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTCTGAAAATT+TGG | + | chr1_2:55807298-55807317 | Msa0078360:intron | 20.0% |
| !!! | AAGGTAGATATTTTTTAGAA+GGG | + | chr1_2:55807393-55807412 | Msa0078360:intron | 20.0% |
| !! | AGAATAAGGTAAAGTTAAAA+GGG | - | chr1_2:55807482-55807501 | None:intergenic | 20.0% |
| !! | AAGAATAAGGTAAAGTTAAA+AGG | - | chr1_2:55807483-55807502 | None:intergenic | 20.0% |
| !! | CTTCCTTTACAAATATTTAT+TGG | + | chr1_2:55807850-55807869 | Msa0078360:intron | 20.0% |
| !! | TAGCCAATAAATATTTGTAA+AGG | - | chr1_2:55807856-55807875 | None:intergenic | 20.0% |
| !! | GTTGCAAAAAAATTAATAAC+AGG | - | chr1_2:55807957-55807976 | None:intergenic | 20.0% |
| !! | TAGAATTAGAAACATGATTT+AGG | - | chr1_2:55808073-55808092 | None:intergenic | 20.0% |
| !!! | ATGACATAAATTTTCTCTTT+CGG | + | chr1_2:55808146-55808165 | Msa0078360:intron | 20.0% |
| !!! | ATATGGTATAGTTGTTTTAT+TGG | + | chr1_2:55808290-55808309 | Msa0078360:intron | 20.0% |
| !!! | ACATTAAGTTTTGAATTCAT+TGG | + | chr1_2:55808637-55808656 | Msa0078360:intron | 20.0% |
| !! | GTCTTTGGTTAAAATTTATT+TGG | - | chr1_2:55809017-55809036 | None:intergenic | 20.0% |
| !! | TGTTAATTGTATTACCAATT+TGG | + | chr1_2:55809680-55809699 | Msa0078360:three_prime_UTR | 20.0% |
| !! | TTTTCTTACTTGGATTTTCT+AGG | + | chr1_2:55802520-55802539 | Msa0078360:CDS | 25.0% |
| !!! | TGTAGACTTTATTTCTGTAT+TGG | + | chr1_2:55802674-55802693 | Msa0078360:intron | 25.0% |
| !!! | GTAGACTTTATTTCTGTATT+GGG | + | chr1_2:55802675-55802694 | Msa0078360:intron | 25.0% |
| !!! | TTGATAGGTTTGTTAATTGA+GGG | + | chr1_2:55802734-55802753 | Msa0078360:intron | 25.0% |
| ! | TGTTACGTATAGATAAAAAG+AGG | + | chr1_2:55802824-55802843 | Msa0078360:intron | 25.0% |
| ! | GTTACGTATAGATAAAAAGA+GGG | + | chr1_2:55802825-55802844 | Msa0078360:intron | 25.0% |
| ! | TTACGTATAGATAAAAAGAG+GGG | + | chr1_2:55802826-55802845 | Msa0078360:intron | 25.0% |
| ! | GTATAATTTCATTTGAGAGT+TGG | + | chr1_2:55802862-55802881 | Msa0078360:intron | 25.0% |
| !!! | GCTGTTTTTATAAGCTATAT+TGG | + | chr1_2:55803492-55803511 | Msa0078360:intron | 25.0% |
| !!! | ATTTATATTCTGGCTCATTT+AGG | - | chr1_2:55804301-55804320 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATATTTACTG+GGG | - | chr1_2:55805431-55805450 | None:intergenic | 25.0% |
| !! | AAGAAAACTTAAAGGTGTAT+AGG | - | chr1_2:55805474-55805493 | None:intergenic | 25.0% |
| ! | ATAAACACACATTTAACTGA+GGG | - | chr1_2:55805703-55805722 | None:intergenic | 25.0% |
| ! | AATAAACACACATTTAACTG+AGG | - | chr1_2:55805704-55805723 | None:intergenic | 25.0% |
| !!! | ATAAATTACCAAAGTGCTTT+TGG | - | chr1_2:55805863-55805882 | None:intergenic | 25.0% |
| !! | TTTGTACCTTTTAATGTAGT+TGG | + | chr1_2:55806027-55806046 | Msa0078360:intron | 25.0% |
| ! | ATTGTTCCAACTACATTAAA+AGG | - | chr1_2:55806036-55806055 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATGAAACCCAA+TGG | - | chr1_2:55806114-55806133 | None:intergenic | 25.0% |
| !! | CAATAGAACATTTTCGTTTA+AGG | + | chr1_2:55806145-55806164 | Msa0078360:intron | 25.0% |
| !!! | CGTTTAAGGTTTGTTATTAA+TGG | + | chr1_2:55806159-55806178 | Msa0078360:intron | 25.0% |
| ! | AGTTCAACTTCAATAAAAAC+TGG | - | chr1_2:55806213-55806232 | None:intergenic | 25.0% |
| !!! | ATTTGATCTACTTTTCTCAT+TGG | + | chr1_2:55806240-55806259 | Msa0078360:intron | 25.0% |
| ! | AAATATATTGAACGGCATAT+GGG | - | chr1_2:55806304-55806323 | None:intergenic | 25.0% |
| ! | AAAATATATTGAACGGCATA+TGG | - | chr1_2:55806305-55806324 | None:intergenic | 25.0% |
| ! | ACCAAATGTAATGCAAAATA+GGG | - | chr1_2:55806729-55806748 | None:intergenic | 25.0% |
| ! | GTAAAATTTGGTCAAAAAAC+AGG | + | chr1_2:55806940-55806959 | Msa0078360:intron | 25.0% |
| !! | CTTTGGCAAAATATTTTACT+TGG | + | chr1_2:55807012-55807031 | Msa0078360:intron | 25.0% |
| !! | GTCCTATAAAACTTTTGTTA+TGG | + | chr1_2:55807034-55807053 | Msa0078360:intron | 25.0% |
| ! | TTGTTATGGTAAACTACAAA+AGG | + | chr1_2:55807048-55807067 | Msa0078360:intron | 25.0% |
| ! | TGTTATGGTAAACTACAAAA+GGG | + | chr1_2:55807049-55807068 | Msa0078360:intron | 25.0% |
| ! | GTCCTATAAAACTTTAGTTA+TGG | + | chr1_2:55807079-55807098 | Msa0078360:intron | 25.0% |
| ! | TTATGGTAAATTACAAGGAA+GGG | + | chr1_2:55807096-55807115 | Msa0078360:intron | 25.0% |
| !! | GAAAATTTGGTTTCCAATTT+AGG | + | chr1_2:55807311-55807330 | Msa0078360:intron | 25.0% |
| !!! | CAAGGTAGATATTTTTTAGA+AGG | + | chr1_2:55807392-55807411 | Msa0078360:intron | 25.0% |
| ! | GAATAAGGTAAAGTTAAAAG+GGG | - | chr1_2:55807481-55807500 | None:intergenic | 25.0% |
| ! | TAATAACAGGACAAAATAGA+AGG | - | chr1_2:55807944-55807963 | None:intergenic | 25.0% |
| !! | AAGTAACCAAACTGTTTTAT+AGG | + | chr1_2:55808201-55808220 | Msa0078360:intron | 25.0% |
| ! | TGAAATCCTATAAAACAGTT+TGG | - | chr1_2:55808210-55808229 | None:intergenic | 25.0% |
| ! | CTAACAGAAAGATACAAATA+GGG | - | chr1_2:55808234-55808253 | None:intergenic | 25.0% |
| ! | TCTAACAGAAAGATACAAAT+AGG | - | chr1_2:55808235-55808254 | None:intergenic | 25.0% |
| ! | TTAACTTCTAACAGAAAGAT+AGG | - | chr1_2:55808241-55808260 | None:intergenic | 25.0% |
| ! | TATACAATACAAATACACTC+AGG | - | chr1_2:55808942-55808961 | None:intergenic | 25.0% |
| !!! | TTAAAATTTATTTGGTGCTC+TGG | - | chr1_2:55809009-55809028 | None:intergenic | 25.0% |
| ! | GGTAATTTCATTATTGAATG+TGG | - | chr1_2:55809100-55809119 | None:intergenic | 25.0% |
| ! | AACTAATGTTACAAGTTGTT+GGG | - | chr1_2:55809134-55809153 | None:intergenic | 25.0% |
| ! | AAACTAATGTTACAAGTTGT+TGG | - | chr1_2:55809135-55809154 | None:intergenic | 25.0% |
| !!! | TTTTGTACATTGGTTTATCA+AGG | + | chr1_2:55809538-55809557 | Msa0078360:intron | 25.0% |
| ATTATGATGCACTGTACAAT+TGG | + | chr1_2:55802574-55802593 | Msa0078360:CDS | 30.0% | |
| TTATGATGCACTGTACAATT+GGG | + | chr1_2:55802575-55802594 | Msa0078360:CDS | 30.0% | |
| !! | GTTGATAGGTTTGTTAATTG+AGG | + | chr1_2:55802733-55802752 | Msa0078360:intron | 30.0% |
| ! | TTAGTTGGTTAGTTAGTAGT+TGG | + | chr1_2:55802765-55802784 | Msa0078360:intron | 30.0% |
| ! | TAAGACATGTTTCTATCAAG+TGG | + | chr1_2:55802903-55802922 | Msa0078360:intron | 30.0% |
| AAACACATTCTAGACAATCT+TGG | + | chr1_2:55802991-55803010 | Msa0078360:intron | 30.0% | |
| AGTTTCAAAAAGAGAACTCT+AGG | + | chr1_2:55803031-55803050 | Msa0078360:intron | 30.0% | |
| ACATCTAGGAATCACAATAT+TGG | + | chr1_2:55803058-55803077 | Msa0078360:intron | 30.0% | |
| AATCACAATATTGGTAAGAG+AGG | + | chr1_2:55803067-55803086 | Msa0078360:intron | 30.0% | |
| ! | TGGATGTTATTTGATAACAC+TGG | + | chr1_2:55803300-55803319 | Msa0078360:intron | 30.0% |
| AATTAGCTGTTTATCCAAAC+AGG | - | chr1_2:55803360-55803379 | None:intergenic | 30.0% | |
| AGCTATATTGGTGAACTTAT+TGG | + | chr1_2:55803504-55803523 | Msa0078360:intron | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr1_2:55803553-55803572 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr1_2:55803554-55803573 | None:intergenic | 30.0% |
| ! | TGAATAAGTTTGATAGCAAC+TGG | - | chr1_2:55803818-55803837 | None:intergenic | 30.0% |
| TTACATACATCATGTAGTGT+GGG | - | chr1_2:55804161-55804180 | None:intergenic | 30.0% | |
| CTGTATGATGTTTAGATGAA+CGG | + | chr1_2:55804193-55804212 | Msa0078360:intron | 30.0% | |
| TGTATGATGTTTAGATGAAC+GGG | + | chr1_2:55804194-55804213 | Msa0078360:intron | 30.0% | |
| ! | GTGAAAAGTATGGATAAACT+AGG | - | chr1_2:55804895-55804914 | None:intergenic | 30.0% |
| ACATGCTTCCTTCTATTAAA+TGG | + | chr1_2:55805080-55805099 | Msa0078360:intron | 30.0% | |
| CGTAAAAGCCATTTAATAGA+AGG | - | chr1_2:55805091-55805110 | None:intergenic | 30.0% | |
| ! | AATGGCTTTTACGCATATTT+AGG | + | chr1_2:55805098-55805117 | Msa0078360:intron | 30.0% |
| ! | GGGGAAATTGATATGATTTT+TGG | + | chr1_2:55805125-55805144 | Msa0078360:intron | 30.0% |
| CATCATTTAATAGGCATCAA+CGG | - | chr1_2:55805173-55805192 | None:intergenic | 30.0% | |
| AGCTTGTGAAGAAAACTTAA+AGG | - | chr1_2:55805482-55805501 | None:intergenic | 30.0% | |
| !! | ATGCTTCTAATAGCTTGTTA+GGG | + | chr1_2:55805669-55805688 | Msa0078360:intron | 30.0% |
| TAAACACACATTTAACTGAG+GGG | - | chr1_2:55805702-55805721 | None:intergenic | 30.0% | |
| TGTATACATGATAACACTCT+TGG | - | chr1_2:55805895-55805914 | None:intergenic | 30.0% | |
| AAGCATACAACTAAATGACA+AGG | - | chr1_2:55806392-55806411 | None:intergenic | 30.0% | |
| TGATAATAGATTGAGAGGAT+AGG | - | chr1_2:55806445-55806464 | None:intergenic | 30.0% | |
| ATGACTGATAATAGATTGAG+AGG | - | chr1_2:55806450-55806469 | None:intergenic | 30.0% | |
| TGGATAAAAGATTATGGAAG+TGG | - | chr1_2:55806567-55806586 | None:intergenic | 30.0% | |
| GAAGGTTGGATAAAAGATTA+TGG | - | chr1_2:55806573-55806592 | None:intergenic | 30.0% | |
| AGAAAGTGAGAAATTCAAGA+AGG | - | chr1_2:55806591-55806610 | None:intergenic | 30.0% | |
| TTGTCGACCAAAAGATTATA+AGG | - | chr1_2:55806637-55806656 | None:intergenic | 30.0% | |
| !! | TCTAGTCTTGAAATACTATC+AGG | - | chr1_2:55806673-55806692 | None:intergenic | 30.0% |
| CAAATGTAATGCAAAATAGG+GGG | - | chr1_2:55806727-55806746 | None:intergenic | 30.0% | |
| CCAAATGTAATGCAAAATAG+GGG | - | chr1_2:55806728-55806747 | None:intergenic | 30.0% | |
| CACCAAATGTAATGCAAAAT+AGG | - | chr1_2:55806730-55806749 | None:intergenic | 30.0% | |
| AGGATGCTTGAAAATAGAAT+TGG | - | chr1_2:55806776-55806795 | None:intergenic | 30.0% | |
| GGCACTAAAAACAATAAAAG+AGG | - | chr1_2:55806914-55806933 | None:intergenic | 30.0% | |
| GTTATGGTAAACTACAAAAG+GGG | + | chr1_2:55807050-55807069 | Msa0078360:intron | 30.0% | |
| GTTATGGTAAATTACAAGGA+AGG | + | chr1_2:55807095-55807114 | Msa0078360:intron | 30.0% | |
| AAGGTGACAAATTGAAGTTA+TGG | - | chr1_2:55807178-55807197 | None:intergenic | 30.0% | |
| AACATTCATAACTGTTTCCA+AGG | + | chr1_2:55807211-55807230 | Msa0078360:intron | 30.0% | |
| GAAATCAAATTGCAACTGTA+TGG | - | chr1_2:55807524-55807543 | None:intergenic | 30.0% | |
| TGCTAAATGACTTTACAGTA+CGG | + | chr1_2:55807680-55807699 | Msa0078360:intron | 30.0% | |
| CTGCAATATATATTGCAGAT+TGG | - | chr1_2:55807778-55807797 | None:intergenic | 30.0% | |
| TGGCTTCTTACTGAATAATT+TGG | - | chr1_2:55807818-55807837 | None:intergenic | 30.0% | |
| AAAGGAAGATGATTAGACAA+TGG | - | chr1_2:55807838-55807857 | None:intergenic | 30.0% | |
| ! | TATTGGCTATGTGCATTATT+TGG | + | chr1_2:55807867-55807886 | Msa0078360:intron | 30.0% |
| !!! | GAAATCAGCCCATAATTTTT+TGG | + | chr1_2:55807986-55808005 | Msa0078360:intron | 30.0% |
| GTCACACACCAAAAAATTAT+GGG | - | chr1_2:55807997-55808016 | None:intergenic | 30.0% | |
| TGTCACACACCAAAAAATTA+TGG | - | chr1_2:55807998-55808017 | None:intergenic | 30.0% | |
| !!! | ATAATTTTTTGGTGTGTGAC+AGG | + | chr1_2:55807997-55808016 | Msa0078360:intron | 30.0% |
| TTCTATAGTAGCTTTCAATC+TGG | + | chr1_2:55808088-55808107 | Msa0078360:intron | 30.0% | |
| TCTATAGTAGCTTTCAATCT+GGG | + | chr1_2:55808089-55808108 | Msa0078360:intron | 30.0% | |
| TTGAATTGATATGCGCTATA+TGG | + | chr1_2:55808273-55808292 | Msa0078360:intron | 30.0% | |
| CTAACAGAAAGATAGGAATA+GGG | - | chr1_2:55808323-55808342 | None:intergenic | 30.0% | |
| TCTAACAGAAAGATAGGAAT+AGG | - | chr1_2:55808324-55808343 | None:intergenic | 30.0% | |
| TTGAATTGATATGCGCTATA+TGG | + | chr1_2:55808273-55808292 | Msa0078360:intron | 30.0% | |
| !! | AAATATCCAACTTTAAGGTG+TGG | - | chr1_2:55808490-55808509 | None:intergenic | 30.0% |
| CGGTTAAATATCCAACTTTA+AGG | - | chr1_2:55808495-55808514 | None:intergenic | 30.0% | |
| ! | GAAACGATCAGAATTCTTTT+TGG | + | chr1_2:55808555-55808574 | Msa0078360:CDS | 30.0% |
| !!! | AGTTTTTTTATCCCCATTCA+TGG | - | chr1_2:55808792-55808811 | None:intergenic | 30.0% |
| CAATTGCTCTATATTGTCTT+TGG | - | chr1_2:55809032-55809051 | None:intergenic | 30.0% | |
| AAGACAATATAGAGCAATTG+TGG | + | chr1_2:55809032-55809051 | Msa0078360:intron | 30.0% | |
| !!! | TTAGTTTGCCATTTTTGCTA+TGG | + | chr1_2:55809154-55809173 | Msa0078360:intron | 30.0% |
| !! | TTTAGCCTTATATCAAAGCA+CGG | - | chr1_2:55809334-55809353 | None:intergenic | 30.0% |
| !! | TAATTACATTGGTGTTGAGT+CGG | - | chr1_2:55809388-55809407 | None:intergenic | 30.0% |
| ATCTTACTAAAACTTGGACT+TGG | - | chr1_2:55809423-55809442 | None:intergenic | 30.0% | |
| GTAAGATTATAAAGGGTTGA+TGG | + | chr1_2:55809436-55809455 | Msa0078360:intron | 30.0% | |
| ! | TAAAGAGATTCTCATGCTTT+TGG | - | chr1_2:55809489-55809508 | None:intergenic | 30.0% |
| AATCCACGACATTTAATAGA+TGG | - | chr1_2:55809828-55809847 | None:intergenic | 30.0% | |
| !!! | TGATTTGCTTTTGCTTCTCA+GGG | + | chr1_2:55802469-55802488 | Msa0078360:CDS | 35.0% |
| ACAGTGCATCATAATCTTCA+GGG | - | chr1_2:55802569-55802588 | None:intergenic | 35.0% | |
| TACAGTGCATCATAATCTTC+AGG | - | chr1_2:55802570-55802589 | None:intergenic | 35.0% | |
| ! | TATGTAGTATTGAAGTGTGC+TGG | + | chr1_2:55802636-55802655 | Msa0078360:intron | 35.0% |
| ! | ATGTAGTATTGAAGTGTGCT+GGG | + | chr1_2:55802637-55802656 | Msa0078360:intron | 35.0% |
| GGCTTCATATCAATGTTGAT+AGG | + | chr1_2:55802719-55802738 | Msa0078360:intron | 35.0% | |
| TTGAGGGAGTTAAACTTAGT+TGG | + | chr1_2:55802750-55802769 | Msa0078360:intron | 35.0% | |
| GATAAAAAGAGGGGTTTAGA+AGG | + | chr1_2:55802835-55802854 | Msa0078360:intron | 35.0% | |
| !! | TGTCTTATTTAGTTGCCCAA+AGG | - | chr1_2:55802890-55802909 | None:intergenic | 35.0% |
| GACAATCTTGGAGAATTAAG+TGG | + | chr1_2:55803003-55803022 | Msa0078360:intron | 35.0% | |
| ! | CCTAGTAGTGTTATTGATTG+CGG | + | chr1_2:55803157-55803176 | Msa0078360:intron | 35.0% |
| TATAGCCAATTTGTGAAGGA+CGG | - | chr1_2:55803258-55803277 | None:intergenic | 35.0% | |
| TGTCTCATGTAAGTTCAACT+AGG | - | chr1_2:55803328-55803347 | None:intergenic | 35.0% | |
| GCTTATCATAATAAGCGCTT+GGG | + | chr1_2:55803399-55803418 | Msa0078360:intron | 35.0% | |
| TTTGGGAGAACTTGAGAAAA+CGG | - | chr1_2:55803536-55803555 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | - | chr1_2:55803578-55803597 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr1_2:55803588-55803607 | Msa0078360:intron | 35.0% | |
| TGTTGCCTACAAATAAGAAG+AGG | + | chr1_2:55803653-55803672 | Msa0078360:intron | 35.0% | |
| GTTGCCTACAAATAAGAAGA+GGG | + | chr1_2:55803654-55803673 | Msa0078360:intron | 35.0% | |
| TTGCCTACAAATAAGAAGAG+GGG | + | chr1_2:55803655-55803674 | Msa0078360:intron | 35.0% | |
| !!! | TCTTGTCATTTTGAGAGTTG+AGG | + | chr1_2:55803697-55803716 | Msa0078360:intron | 35.0% |
| ! | TATTAGCTGACAGAAGTGTA+TGG | - | chr1_2:55803887-55803906 | None:intergenic | 35.0% |
| GAGAAAATGCAAAATACACG+AGG | - | chr1_2:55803924-55803943 | None:intergenic | 35.0% | |
| GTATGTTCGTAATGTATCCA+AGG | - | chr1_2:55803980-55803999 | None:intergenic | 35.0% | |
| AGCTTGCAAAAAATATGACG+AGG | + | chr1_2:55804121-55804140 | Msa0078360:CDS | 35.0% | |
| CTTACATACATCATGTAGTG+TGG | - | chr1_2:55804162-55804181 | None:intergenic | 35.0% | |
| CACACTACATGATGTATGTA+AGG | + | chr1_2:55804160-55804179 | Msa0078360:intron | 35.0% | |
| TATCCAGGCTTACTACAATT+GGG | + | chr1_2:55804976-55804995 | Msa0078360:intron | 35.0% | |
| ! | TTTTACGCATATTTAGGCTC+TGG | + | chr1_2:55805104-55805123 | Msa0078360:intron | 35.0% |
| TTTACGCATATTTAGGCTCT+GGG | + | chr1_2:55805105-55805124 | Msa0078360:intron | 35.0% | |
| !!! | TTTTTTTTTTCCCAGGCAAC+AGG | + | chr1_2:55805280-55805299 | Msa0078360:intron | 35.0% |
| !!! | TTTTTTTTTCCCAGGCAACA+GGG | + | chr1_2:55805281-55805300 | Msa0078360:intron | 35.0% |
| AAAAAAGAGAGAAGAACCTG+AGG | - | chr1_2:55805343-55805362 | None:intergenic | 35.0% | |
| TTCGATGAGAGTCAGTAAAA+GGG | - | chr1_2:55805525-55805544 | None:intergenic | 35.0% | |
| ATTCGATGAGAGTCAGTAAA+AGG | - | chr1_2:55805526-55805545 | None:intergenic | 35.0% | |
| ACTCTCATCGAATCTATTTC+AGG | + | chr1_2:55805533-55805552 | Msa0078360:intron | 35.0% | |
| TATTTCAGGCGCTTAATAAC+TGG | + | chr1_2:55805547-55805566 | Msa0078360:intron | 35.0% | |
| ATTTCAGGCGCTTAATAACT+GGG | + | chr1_2:55805548-55805567 | Msa0078360:intron | 35.0% | |
| !! | CATGCTTCTAATAGCTTGTT+AGG | + | chr1_2:55805668-55805687 | Msa0078360:intron | 35.0% |
| ! | TTTCATCCTTTTCTATGAGC+TGG | + | chr1_2:55805806-55805825 | Msa0078360:intron | 35.0% |
| !! | GTTTCATACCAAAAGCACTT+TGG | + | chr1_2:55805852-55805871 | Msa0078360:intron | 35.0% |
| ACATGATAACACTCTTGGAT+AGG | - | chr1_2:55805890-55805909 | None:intergenic | 35.0% | |
| ATGACTGTCTTGATACATAG+AGG | - | chr1_2:55805931-55805950 | None:intergenic | 35.0% | |
| GAACAATGTGTTCAAACACT+AGG | + | chr1_2:55806049-55806068 | Msa0078360:intron | 35.0% | |
| TCAATGTCAATCAATGCCAT+TGG | + | chr1_2:55806095-55806114 | Msa0078360:intron | 35.0% | |
| CAATGTCAATCAATGCCATT+GGG | + | chr1_2:55806096-55806115 | Msa0078360:intron | 35.0% | |
| GGAAGGGTCAATAAATTTCA+AGG | - | chr1_2:55806355-55806374 | None:intergenic | 35.0% | |
| AGTGAGAAATTCAAGAAGGT+TGG | - | chr1_2:55806587-55806606 | None:intergenic | 35.0% | |
| GAGTGCCAAAAAAATCCTAT+TGG | + | chr1_2:55806691-55806710 | Msa0078360:intron | 35.0% | |
| ! | CCCCTATTTTGCATTACATT+TGG | + | chr1_2:55806725-55806744 | Msa0078360:intron | 35.0% |
| ATCCTTGTAGAACATTACTC+AGG | + | chr1_2:55806791-55806810 | Msa0078360:intron | 35.0% | |
| TACCTGAGTAATGTTCTACA+AGG | - | chr1_2:55806796-55806815 | None:intergenic | 35.0% | |
| ACCTAACATTAGCAACTTAG+TGG | + | chr1_2:55806819-55806838 | Msa0078360:intron | 35.0% | |
| TCCACTAAGTTGCTAATGTT+AGG | - | chr1_2:55806823-55806842 | None:intergenic | 35.0% | |
| ! | TTGACCAAATTTTACATGGC+TGG | - | chr1_2:55806935-55806954 | None:intergenic | 35.0% |
| TAAACTACAAAAGGGGAACT+TGG | + | chr1_2:55807057-55807076 | Msa0078360:intron | 35.0% | |
| ACCAACAATAAACCCACAAT+TGG | - | chr1_2:55807125-55807144 | None:intergenic | 35.0% | |
| ! | TCCTGATTTGCATTTGTAAG+AGG | + | chr1_2:55807146-55807165 | Msa0078360:intron | 35.0% |
| !!! | ATTTTTTGCTTTTCTCGAGC+AGG | - | chr1_2:55807354-55807373 | None:intergenic | 35.0% |
| !!! | TTTTTTAGAAGGGAATCGCA+TGG | + | chr1_2:55807403-55807422 | Msa0078360:intron | 35.0% |
| ! | AGTTGCAATTTGATTTCCAC+CGG | + | chr1_2:55807527-55807546 | Msa0078360:CDS | 35.0% |
| TTCCAAGATTGTAAATTGCC+CGG | - | chr1_2:55807549-55807568 | None:intergenic | 35.0% | |
| TTACAATCTTGGAACTGTTC+TGG | + | chr1_2:55807555-55807574 | Msa0078360:CDS | 35.0% | |
| ! | GATTGGCTGTACAATTCATT+TGG | - | chr1_2:55807761-55807780 | None:intergenic | 35.0% |
| GCTATGTGCATTATTTGGAT+TGG | + | chr1_2:55807872-55807891 | Msa0078360:intron | 35.0% | |
| ! | GTGCATTATTTGGATTGGAA+AGG | + | chr1_2:55807877-55807896 | Msa0078360:intron | 35.0% |
| CGCATATCAATTCAAGTAGA+AGG | - | chr1_2:55808268-55808287 | None:intergenic | 35.0% | |
| CGCATATCAATTCAAGTAGA+AGG | - | chr1_2:55808268-55808287 | None:intergenic | 35.0% | |
| GAATTCATTGGATAACCTCT+AGG | + | chr1_2:55808649-55808668 | Msa0078360:intron | 35.0% | |
| AGTTCATGGATCAGTTTACT+TGG | + | chr1_2:55808898-55808917 | Msa0078360:CDS | 35.0% | |
| AGAACAAGCCATAGCAAAAA+TGG | - | chr1_2:55809165-55809184 | None:intergenic | 35.0% | |
| ! | CTCTTGTTGTGCTATTGAAA+TGG | + | chr1_2:55809257-55809276 | Msa0078360:intron | 35.0% |
| ! | TTGTTGTGCTATTGAAATGG+TGG | + | chr1_2:55809260-55809279 | Msa0078360:intron | 35.0% |
| TAAAAAGGTCATGCCATCAA+GGG | - | chr1_2:55809293-55809312 | None:intergenic | 35.0% | |
| ATAAAAAGGTCATGCCATCA+AGG | - | chr1_2:55809294-55809313 | None:intergenic | 35.0% | |
| CTAAACCCTATGTATTTCCT+GGG | + | chr1_2:55809349-55809368 | Msa0078360:intron | 35.0% | |
| !! | AATTACATTGGTGTTGAGTC+GGG | - | chr1_2:55809387-55809406 | None:intergenic | 35.0% |
| CTCAATTTGACAGACCAAAT+TGG | - | chr1_2:55809697-55809716 | None:intergenic | 35.0% | |
| TAGCCATCTATTAAATGTCG+TGG | + | chr1_2:55809822-55809841 | Msa0078360:three_prime_UTR | 35.0% | |
| !!! | CTGATTTGCTTTTGCTTCTC+AGG | + | chr1_2:55802468-55802487 | Msa0078360:CDS | 40.0% |
| ! | TTAGTTAGTAGTTGGTGCCT+TGG | + | chr1_2:55802773-55802792 | Msa0078360:intron | 40.0% |
| ! | TAGTTAGTAGTTGGTGCCTT+GGG | + | chr1_2:55802774-55802793 | Msa0078360:intron | 40.0% |
| TTTAATGATTCCAGCTCCCA+AGG | - | chr1_2:55802793-55802812 | None:intergenic | 40.0% | |
| AAAAAGAGGGGTTTAGAAGG+AGG | + | chr1_2:55802838-55802857 | Msa0078360:intron | 40.0% | |
| ATTTGAGAGTTGGGTCCTTT+GGG | + | chr1_2:55802872-55802891 | Msa0078360:intron | 40.0% | |
| ! | GAACTCTAGGAGAAACATCT+AGG | + | chr1_2:55803044-55803063 | Msa0078360:intron | 40.0% |
| CCGCAATCAATAACACTACT+AGG | - | chr1_2:55803160-55803179 | None:intergenic | 40.0% | |
| ! | GTAGTGTTATTGATTGCGGA+TGG | + | chr1_2:55803161-55803180 | Msa0078360:intron | 40.0% |
| CTGCTATAGCCAATTTGTGA+AGG | - | chr1_2:55803262-55803281 | None:intergenic | 40.0% | |
| CACAAATTGGCTATAGCAGT+TGG | + | chr1_2:55803263-55803282 | Msa0078360:intron | 40.0% | |
| AGTTGGCAAGTATTCTGTCA+TGG | + | chr1_2:55803280-55803299 | Msa0078360:intron | 40.0% | |
| CGCTTATCATAATAAGCGCT+TGG | + | chr1_2:55803398-55803417 | Msa0078360:intron | 40.0% | |
| GTTCGGGGCTACAAATAATT+AGG | + | chr1_2:55803620-55803639 | Msa0078360:intron | 40.0% | |
| ! | CAACCCCTCTTCTTATTTGT+AGG | - | chr1_2:55803661-55803680 | None:intergenic | 40.0% |
| !! | ATTTTGAGAGTTGAGGCCAT+TGG | + | chr1_2:55803704-55803723 | Msa0078360:intron | 40.0% |
| !! | TTTTGAGAGTTGAGGCCATT+GGG | + | chr1_2:55803705-55803724 | Msa0078360:intron | 40.0% |
| GGAAAATCTGTAATGACTGC+AGG | - | chr1_2:55803775-55803794 | None:intergenic | 40.0% | |
| TTAGAAGGTGAAGTGGAATC+TGG | - | chr1_2:55804083-55804102 | None:intergenic | 40.0% | |
| ! | AGCATCTTTAGAAGGTGAAG+TGG | - | chr1_2:55804090-55804109 | None:intergenic | 40.0% |
| ! | TCAAGCAGAGCATCTTTAGA+AGG | - | chr1_2:55804098-55804117 | None:intergenic | 40.0% |
| ! | TTCTAAAGATGCTCTGCTTG+AGG | + | chr1_2:55804097-55804116 | Msa0078360:CDS | 40.0% |
| ATCGCTCTCAGTGAAAAGTA+TGG | - | chr1_2:55804905-55804924 | None:intergenic | 40.0% | |
| ! | ATACTTTTCACTGAGAGCGA+TGG | + | chr1_2:55804904-55804923 | Msa0078360:intron | 40.0% |
| GTATCCAGGCTTACTACAAT+TGG | + | chr1_2:55804975-55804994 | Msa0078360:intron | 40.0% | |
| AAGAGCTATGGAAACAGGTT+AGG | + | chr1_2:55805050-55805069 | Msa0078360:intron | 40.0% | |
| TTACGCATATTTAGGCTCTG+GGG | + | chr1_2:55805106-55805125 | Msa0078360:intron | 40.0% | |
| TTAAAGCAGTCCAACTCAAC+TGG | + | chr1_2:55805311-55805330 | Msa0078360:CDS | 40.0% | |
| TTAGCGTCTTCTTGTTGAAC+TGG | + | chr1_2:55805376-55805395 | Msa0078360:intron | 40.0% | |
| TCGATGAGAGTCAGTAAAAG+GGG | - | chr1_2:55805524-55805543 | None:intergenic | 40.0% | |
| TTTCAGGCGCTTAATAACTG+GGG | + | chr1_2:55805549-55805568 | Msa0078360:intron | 40.0% | |
| AAAGCTCCAGCTCATAGAAA+AGG | - | chr1_2:55805815-55805834 | None:intergenic | 40.0% | |
| TTCAAACACTAGGTGTGACT+GGG | + | chr1_2:55806059-55806078 | Msa0078360:intron | 40.0% | |
| ! | TAATGGTTTCTCCGTTTTCG+CGG | + | chr1_2:55806176-55806195 | Msa0078360:intron | 40.0% |
| AGAATTGGATGAGCTAGTAG+TGG | - | chr1_2:55806761-55806780 | None:intergenic | 40.0% | |
| AGTGCCAGCCATGTAAAATT+TGG | + | chr1_2:55806928-55806947 | Msa0078360:intron | 40.0% | |
| GCCAATTGTGGGTTTATTGT+TGG | + | chr1_2:55807121-55807140 | Msa0078360:intron | 40.0% | |
| GCCTCTTACAAATGCAAATC+AGG | - | chr1_2:55807150-55807169 | None:intergenic | 40.0% | |
| ! | ATGGCACTGAGTTCCTAAAT+TGG | - | chr1_2:55807327-55807346 | None:intergenic | 40.0% |
| CGGAACTGCATTGAAGAATA+AGG | - | chr1_2:55807496-55807515 | None:intergenic | 40.0% | |
| ATTGCAACTGTATGGCTGAA+CGG | - | chr1_2:55807516-55807535 | None:intergenic | 40.0% | |
| ! | GTTGCAATTTGATTTCCACC+GGG | + | chr1_2:55807528-55807547 | Msa0078360:CDS | 40.0% |
| CATGTTATGCTCTGTTGTCT+TGG | + | chr1_2:55807614-55807633 | Msa0078360:intron | 40.0% | |
| !! | TTTACAGTACGGATTAGCAG+AGG | + | chr1_2:55807691-55807710 | Msa0078360:intron | 40.0% |
| ! | CAGAGGACACTTTAAGAACA+GGG | + | chr1_2:55807708-55807727 | Msa0078360:CDS | 40.0% |
| ! | AGAGGACACTTTAAGAACAG+GGG | + | chr1_2:55807709-55807728 | Msa0078360:CDS | 40.0% |
| TAGTTGCACCTCATAATGAC+TGG | + | chr1_2:55808533-55808552 | Msa0078360:CDS | 40.0% | |
| GATCGTTTCCAGTCATTATG+AGG | - | chr1_2:55808544-55808563 | None:intergenic | 40.0% | |
| CATGAACTGTATCAATGCAG+AGG | - | chr1_2:55808886-55808905 | None:intergenic | 40.0% | |
| ! | CTCTGCATTGATACAGTTCA+TGG | + | chr1_2:55808884-55808903 | Msa0078360:CDS | 40.0% |
| CCTACAACAAGTGTAGAAGA+AGG | - | chr1_2:55808977-55808996 | None:intergenic | 40.0% | |
| !! | CCTTCTTCTACACTTGTTGT+AGG | + | chr1_2:55808974-55808993 | Msa0078360:intron | 40.0% |
| ! | GCACTACTGGAAGCATAAAA+AGG | - | chr1_2:55809308-55809327 | None:intergenic | 40.0% |
| GCTAAACCCTATGTATTTCC+TGG | + | chr1_2:55809348-55809367 | Msa0078360:intron | 40.0% | |
| AGTCACCCAGGAAATACATA+GGG | - | chr1_2:55809357-55809376 | None:intergenic | 40.0% | |
| !! | ATTACATTGGTGTTGAGTCG+GGG | - | chr1_2:55809386-55809405 | None:intergenic | 40.0% |
| !! | TTATCAAGGTTGCTGACTCT+TGG | + | chr1_2:55809552-55809571 | Msa0078360:intron | 40.0% |
| !! | TATCAAGGTTGCTGACTCTT+GGG | + | chr1_2:55809553-55809572 | Msa0078360:intron | 40.0% |
| GTCTACACTATTTATGTGCG+AGG | + | chr1_2:55809611-55809630 | Msa0078360:CDS | 40.0% | |
| AGGCAAAAGTGATGTATTGG+CGG | + | chr1_2:55809631-55809650 | Msa0078360:CDS | 40.0% | |
| ! | GTATTGGCGGGTATTATAAC+AGG | + | chr1_2:55809644-55809663 | Msa0078360:CDS | 40.0% |
| ! | AGTTCGCAAAGAAGTGCAAA+AGG | - | chr1_2:55809737-55809756 | None:intergenic | 40.0% |
| AGATGGCTAATGAGCAAACT+CGG | - | chr1_2:55809811-55809830 | None:intergenic | 40.0% | |
| TGCACTGTACAATTGGGCAT+TGG | + | chr1_2:55802581-55802600 | Msa0078360:CDS | 45.0% | |
| !! | CAATTGGGCATTGGTACTTC+AGG | + | chr1_2:55802590-55802609 | Msa0078360:CDS | 45.0% |
| CATTTGAGAGTTGGGTCCTT+TGG | + | chr1_2:55802871-55802890 | Msa0078360:intron | 45.0% | |
| ! | TGGTGTTGAAGCTCTGTTCT+TGG | + | chr1_2:55802923-55802942 | Msa0078360:intron | 45.0% |
| TTGGTAAGAGAGGATGCATG+TGG | + | chr1_2:55803077-55803096 | Msa0078360:intron | 45.0% | |
| TAAGAGAGGATGCATGTGGA+TGG | + | chr1_2:55803081-55803100 | Msa0078360:intron | 45.0% | |
| ! | GTGTTATTGATTGCGGATGG+TGG | + | chr1_2:55803164-55803183 | Msa0078360:intron | 45.0% |
| AGACAGAGTTAGAGCCTGTT+TGG | + | chr1_2:55803343-55803362 | Msa0078360:intron | 45.0% | |
| TCATAAGGGCCTGTTTGGAT+TGG | - | chr1_2:55803600-55803619 | None:intergenic | 45.0% | |
| CAAACAGGCCCTTATGAGTT+CGG | + | chr1_2:55803603-55803622 | Msa0078360:intron | 45.0% | |
| AAACAGGCCCTTATGAGTTC+GGG | + | chr1_2:55803604-55803623 | Msa0078360:intron | 45.0% | |
| TTGTAGCCCCGAACTCATAA+GGG | - | chr1_2:55803614-55803633 | None:intergenic | 45.0% | |
| TTTGTAGCCCCGAACTCATA+AGG | - | chr1_2:55803615-55803634 | None:intergenic | 45.0% | |
| TAAGAAGAGGGGTTGTTGAG+AGG | + | chr1_2:55803666-55803685 | Msa0078360:intron | 45.0% | |
| AAGAAGAGGGGTTGTTGAGA+GGG | + | chr1_2:55803667-55803686 | Msa0078360:intron | 45.0% | |
| ATAAACCTCCCTATGCCCAA+TGG | - | chr1_2:55803723-55803742 | None:intergenic | 45.0% | |
| ATTGGGCATAGGGAGGTTTA+TGG | + | chr1_2:55803722-55803741 | Msa0078360:intron | 45.0% | |
| GCAGCATTGCGAAATTTCGA+AGG | - | chr1_2:55803749-55803768 | None:intergenic | 45.0% | |
| ! | TGATCCAAGCTTTTGCATGC+AGG | + | chr1_2:55804037-55804056 | Msa0078360:intron | 45.0% |
| CTTTCCTGCATGCAAAAGCT+TGG | - | chr1_2:55804044-55804063 | None:intergenic | 45.0% | |
| ! | CTTTTGCATGCAGGAAAGTG+CGG | + | chr1_2:55804046-55804065 | Msa0078360:intron | 45.0% |
| CATCATGTAGTGTGGGACAA+AGG | - | chr1_2:55804154-55804173 | None:intergenic | 45.0% | |
| !!! | CTAGTATTTTAGCTGTGCCC+AGG | - | chr1_2:55804273-55804292 | None:intergenic | 45.0% |
| TTGCCCAATTGTAGTAAGCC+TGG | - | chr1_2:55804982-55805001 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGAAGAGCTA+TGG | + | chr1_2:55805038-55805057 | Msa0078360:CDS | 45.0% | |
| AGCTGAAGAGCTATGGAAAC+AGG | + | chr1_2:55805045-55805064 | Msa0078360:CDS | 45.0% | |
| AACATAGTTCCCTGTTGCCT+GGG | - | chr1_2:55805293-55805312 | None:intergenic | 45.0% | |
| TAACATAGTTCCCTGTTGCC+TGG | - | chr1_2:55805294-55805313 | None:intergenic | 45.0% | |
| !!! | GAGCTGGAGCTTTTAACTTC+TGG | + | chr1_2:55805822-55805841 | Msa0078360:intron | 45.0% |
| GTTCAAACACTAGGTGTGAC+TGG | + | chr1_2:55806058-55806077 | Msa0078360:intron | 45.0% | |
| TCAAACACTAGGTGTGACTG+GGG | + | chr1_2:55806060-55806079 | Msa0078360:intron | 45.0% | |
| ! | AATGGTTTCTCCGTTTTCGC+GGG | + | chr1_2:55806177-55806196 | Msa0078360:intron | 45.0% |
| ! | GGGAGCTTACAAGAGGTTTT+AGG | - | chr1_2:55806284-55806303 | None:intergenic | 45.0% |
| GGCACTGTGTAATCTTGGAA+GGG | - | chr1_2:55806371-55806390 | None:intergenic | 45.0% | |
| ! | AGGCACTGTGTAATCTTGGA+AGG | - | chr1_2:55806372-55806391 | None:intergenic | 45.0% |
| !! | GACAAGGCACTGTGTAATCT+TGG | - | chr1_2:55806376-55806395 | None:intergenic | 45.0% |
| ! | GGGGGTTCACATTTTCCAAT+AGG | - | chr1_2:55806709-55806728 | None:intergenic | 45.0% |
| AAGGAAGGGTTGCCAATTGT+GGG | + | chr1_2:55807110-55807129 | Msa0078360:intron | 45.0% | |
| CAATATTTGAAGGGGAGCCT+TGG | - | chr1_2:55807231-55807250 | None:intergenic | 45.0% | |
| ! | CTTTTCTCGAGCAGGAACAA+TGG | - | chr1_2:55807346-55807365 | None:intergenic | 45.0% |
| TGTACGAACTGCTATCAGCA+AGG | + | chr1_2:55807374-55807393 | Msa0078360:CDS | 45.0% | |
| CAAGATTGTAAATTGCCCGG+TGG | - | chr1_2:55807546-55807565 | None:intergenic | 45.0% | |
| CACCGGGCAATTTACAATCT+TGG | + | chr1_2:55807544-55807563 | Msa0078360:CDS | 45.0% | |
| ! | GCAGAGGACACTTTAAGAAC+AGG | + | chr1_2:55807707-55807726 | Msa0078360:CDS | 45.0% |
| ! | GAGGACACTTTAAGAACAGG+GGG | + | chr1_2:55807710-55807729 | Msa0078360:CDS | 45.0% |
| ! | AGGACACTTTAAGAACAGGG+GGG | + | chr1_2:55807711-55807730 | Msa0078360:CDS | 45.0% |
| AGGTATATAGCAGTGCCTTG+CGG | + | chr1_2:55808017-55808036 | Msa0078360:intron | 45.0% | |
| !! | CCAACTTTAAGGTGTGGTAG+CGG | - | chr1_2:55808484-55808503 | None:intergenic | 45.0% |
| ATATTTAACCGCACCTCCTG+CGG | + | chr1_2:55808504-55808523 | Msa0078360:CDS | 45.0% | |
| CGAAAAGCTTCAGCAGGTAA+TGG | + | chr1_2:55808582-55808601 | Msa0078360:intron | 45.0% | |
| ATTGGATAACCTCTAGGCTC+TGG | + | chr1_2:55808655-55808674 | Msa0078360:intron | 45.0% | |
| TTTCTCATACCAGAGCCTAG+AGG | - | chr1_2:55808667-55808686 | None:intergenic | 45.0% | |
| CAAAGTCTCTCAACCAGATC+AGG | + | chr1_2:55808761-55808780 | Msa0078360:CDS | 45.0% | |
| ATTCATGGCATCTCCTGATC+TGG | - | chr1_2:55808777-55808796 | None:intergenic | 45.0% | |
| AGATCAGGAGATGCCATGAA+TGG | + | chr1_2:55808776-55808795 | Msa0078360:CDS | 45.0% | |
| GATCAGGAGATGCCATGAAT+GGG | + | chr1_2:55808777-55808796 | Msa0078360:CDS | 45.0% | |
| ATCAGGAGATGCCATGAATG+GGG | + | chr1_2:55808778-55808797 | Msa0078360:CDS | 45.0% | |
| GTTACAAGTTGTTGGGACTG+CGG | - | chr1_2:55809127-55809146 | None:intergenic | 45.0% | |
| GCACACCGTGCTTTGATATA+AGG | + | chr1_2:55809326-55809345 | Msa0078360:intron | 45.0% | |
| CAGTCACCCAGGAAATACAT+AGG | - | chr1_2:55809358-55809377 | None:intergenic | 45.0% | |
| CTATGTATTTCCTGGGTGAC+TGG | + | chr1_2:55809356-55809375 | Msa0078360:intron | 45.0% | |
| !! | TGCTGACTCTTGGGAATCAT+TGG | + | chr1_2:55809562-55809581 | Msa0078360:CDS | 45.0% |
| GACTCTTGGGAATCATTGGA+TGG | + | chr1_2:55809566-55809585 | Msa0078360:CDS | 45.0% | |
| CTTGGGAATCATTGGATGGA+TGG | + | chr1_2:55809570-55809589 | Msa0078360:CDS | 45.0% | |
| GCGAGGCAAAAGTGATGTAT+TGG | + | chr1_2:55809628-55809647 | Msa0078360:CDS | 45.0% | |
| ! | GGCAAAAGTGATGTATTGGC+GGG | + | chr1_2:55809632-55809651 | Msa0078360:CDS | 45.0% |
| ! | TGCTTTTGCTTCTCAGGGAC+AGG | + | chr1_2:55802474-55802493 | Msa0078360:CDS | 50.0% |
| ! | GCTTTTGCTTCTCAGGGACA+GGG | + | chr1_2:55802475-55802494 | Msa0078360:CDS | 50.0% |
| ! | CTTTTGCTTCTCAGGGACAG+GGG | + | chr1_2:55802476-55802495 | Msa0078360:CDS | 50.0% |
| GGTATGCTGCTGCTATTGAG+AGG | + | chr1_2:55802541-55802560 | Msa0078360:CDS | 50.0% | |
| AAGCTCTGTTCTTGGAGCTG+TGG | + | chr1_2:55802931-55802950 | Msa0078360:intron | 50.0% | |
| AGCTCTGTTCTTGGAGCTGT+GGG | + | chr1_2:55802932-55802951 | Msa0078360:intron | 50.0% | |
| !! | GGATGGTGGATCATGACAGA+AGG | + | chr1_2:55803178-55803197 | Msa0078360:intron | 50.0% |
| ! | GGCAGCATGGTGTTTTATGG+TGG | - | chr1_2:55803234-55803253 | None:intergenic | 50.0% |
| ! | GGTGGCAGCATGGTGTTTTA+TGG | - | chr1_2:55803237-55803256 | None:intergenic | 50.0% |
| TGCCACCGTCCTTCACAAAT+TGG | + | chr1_2:55803250-55803269 | Msa0078360:intron | 50.0% | |
| AGCCAATTTGTGAAGGACGG+TGG | - | chr1_2:55803255-55803274 | None:intergenic | 50.0% | |
| CGAACTCATAAGGGCCTGTT+TGG | - | chr1_2:55803605-55803624 | None:intergenic | 50.0% | |
| AACAGGCCCTTATGAGTTCG+GGG | + | chr1_2:55803605-55803624 | Msa0078360:intron | 50.0% | |
| AGTTGAGGCCATTGGGCATA+GGG | + | chr1_2:55803712-55803731 | Msa0078360:intron | 50.0% | |
| AGCCGAACAATAGCATGCCT+GGG | + | chr1_2:55804253-55804272 | Msa0078360:intron | 50.0% | |
| TGCCCAGGCATGCTATTGTT+CGG | - | chr1_2:55804258-55804277 | None:intergenic | 50.0% | |
| GAGGGTCTGCAAACATATGC+AGG | + | chr1_2:55804365-55804384 | Msa0078360:intron | 50.0% | |
| AGCCTGGATACAGTCAGACA+GGG | - | chr1_2:55804966-55804985 | None:intergenic | 50.0% | |
| AAGCCTGGATACAGTCAGAC+AGG | - | chr1_2:55804967-55804986 | None:intergenic | 50.0% | |
| TCTGATCGTGCAAAGATGCG+AGG | + | chr1_2:55805010-55805029 | Msa0078360:CDS | 50.0% | |
| GCTCTTCAGCTTCCTTTGTG+CGG | - | chr1_2:55805036-55805055 | None:intergenic | 50.0% | |
| GAGGACTGTTCCAGTTGAGT+TGG | - | chr1_2:55805324-55805343 | None:intergenic | 50.0% | |
| ACTCAACTGGAACAGTCCTC+AGG | + | chr1_2:55805324-55805343 | Msa0078360:CDS | 50.0% | |
| CTAGGTGTGACTGGGGTATA+TGG | + | chr1_2:55806067-55806086 | Msa0078360:intron | 50.0% | |
| TGCATGTAGACCCGCGAAAA+CGG | - | chr1_2:55806190-55806209 | None:intergenic | 50.0% | |
| GGCATATGGGAGCTTACAAG+AGG | - | chr1_2:55806291-55806310 | None:intergenic | 50.0% | |
| CAAGGAAGGGTTGCCAATTG+TGG | + | chr1_2:55807109-55807128 | Msa0078360:intron | 50.0% | |
| ATATAGCAGTGCCTTGCGGT+TGG | + | chr1_2:55808021-55808040 | Msa0078360:CDS | 50.0% | |
| CATAGATCGTACCAACCGCA+AGG | - | chr1_2:55808035-55808054 | None:intergenic | 50.0% | |
| ! | CTTGCGGTTGGTACGATCTA+TGG | + | chr1_2:55808033-55808052 | Msa0078360:CDS | 50.0% |
| CCGCTACCACACCTTAAAGT+TGG | + | chr1_2:55808481-55808500 | Msa0078360:CDS | 50.0% | |
| TATTTAACCGCACCTCCTGC+GGG | + | chr1_2:55808505-55808524 | Msa0078360:CDS | 50.0% | |
| GGATCACGAAAAGCTTCAGC+AGG | + | chr1_2:55808576-55808595 | Msa0078360:CDS | 50.0% | |
| TTACATGCCTCCCTTCGTAC+AGG | + | chr1_2:55808709-55808728 | Msa0078360:intron | 50.0% | |
| ACTCTGGGTACCTGTACGAA+GGG | - | chr1_2:55808722-55808741 | None:intergenic | 50.0% | |
| AACTCTGGGTACCTGTACGA+AGG | - | chr1_2:55808723-55808742 | None:intergenic | 50.0% | |
| AGGTACCCAGAGTTGAACAG+AGG | + | chr1_2:55808729-55808748 | Msa0078360:intron | 50.0% | |
| GCTTGCCTCTGTTCAACTCT+GGG | - | chr1_2:55808737-55808756 | None:intergenic | 50.0% | |
| TGCTTGCCTCTGTTCAACTC+TGG | - | chr1_2:55808738-55808757 | None:intergenic | 50.0% | |
| TGGTGGAAACAGACCCTTGA+TGG | + | chr1_2:55809277-55809296 | Msa0078360:intron | 50.0% | |
| GGAATCATTGGATGGATGGC+TGG | + | chr1_2:55809574-55809593 | Msa0078360:CDS | 50.0% | |
| GCTCTGTTCTTGGAGCTGTG+GGG | + | chr1_2:55802933-55802952 | Msa0078360:intron | 55.0% | |
| GAGTTGAGGCCATTGGGCAT+AGG | + | chr1_2:55803711-55803730 | Msa0078360:intron | 55.0% | |
| TAGTGTGGGACAAAGGCGAG+TGG | - | chr1_2:55804147-55804166 | None:intergenic | 55.0% | |
| GAGCCGAACAATAGCATGCC+TGG | + | chr1_2:55804252-55804271 | Msa0078360:intron | 55.0% | |
| TCCCCTGTCTGACTGTATCC+AGG | + | chr1_2:55804961-55804980 | Msa0078360:intron | 55.0% | |
| GCCTGGATACAGTCAGACAG+GGG | - | chr1_2:55804965-55804984 | None:intergenic | 55.0% | |
| AAAGATGCGAGGCCGCACAA+AGG | + | chr1_2:55805021-55805040 | Msa0078360:CDS | 55.0% | |
| TAACTGGGGACTTGCGCTTC+AGG | + | chr1_2:55805563-55805582 | Msa0078360:CDS | 55.0% | |
| ATTTAACCGCACCTCCTGCG+GGG | + | chr1_2:55808506-55808525 | Msa0078360:CDS | 55.0% | |
| GCTGATCTGACTTTGCCACC+TGG | + | chr1_2:55808854-55808873 | Msa0078360:CDS | 55.0% | |
| AGTTGTTGGGACTGCGGAAG+TGG | - | chr1_2:55809121-55809140 | None:intergenic | 55.0% | |
| CAAAGCACGGTGTGCACTAC+TGG | - | chr1_2:55809321-55809340 | None:intergenic | 55.0% | |
| !! | CATTGGTGTTGAGTCGGGGA+GGG | - | chr1_2:55809382-55809401 | None:intergenic | 55.0% |
| !! | ACATTGGTGTTGAGTCGGGG+AGG | - | chr1_2:55809383-55809402 | None:intergenic | 55.0% |
| ! | GTAGTTGGTGCCTTGGGAGC+TGG | + | chr1_2:55802780-55802799 | Msa0078360:intron | 60.0% |
| TGTGAAGGACGGTGGCAGCA+TGG | - | chr1_2:55803247-55803266 | None:intergenic | 60.0% | |
| TGAGGCCATTGGGCATAGGG+AGG | + | chr1_2:55803715-55803734 | Msa0078360:intron | 60.0% | |
| TTTAACCGCACCTCCTGCGG+GGG | + | chr1_2:55808507-55808526 | Msa0078360:CDS | 60.0% | |
| CTGGGTACCTGTACGAAGGG+AGG | - | chr1_2:55808719-55808738 | None:intergenic | 60.0% | |
| CTGACTTTGCCACCTGGTGC+TGG | + | chr1_2:55808860-55808879 | Msa0078360:CDS | 60.0% | |
| TCAATGCAGAGGCCAGCACC+AGG | - | chr1_2:55808875-55808894 | None:intergenic | 60.0% | |
| TATTGCCCCCGCAGGAGGTG+CGG | - | chr1_2:55808515-55808534 | None:intergenic | 65.0% | |
| GCAACTATTGCCCCCGCAGG+AGG | - | chr1_2:55808520-55808539 | None:intergenic | 65.0% | |
| GGTGCAACTATTGCCCCCGC+AGG | - | chr1_2:55808523-55808542 | None:intergenic | 65.0% | |
| ATGCAGAGGCCAGCACCAGG+TGG | - | chr1_2:55808872-55808891 | None:intergenic | 65.0% | |
| TCGGGGAGGGCCAGTCACCC+AGG | - | chr1_2:55809369-55809388 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 55802468 | 55809866 | 55802468 | ID=Msa0078360;Name=Msa0078360 |
| chr1_2 | mRNA | 55802468 | 55809866 | 55802468 | ID=Msa0078360-mRNA-1;Parent=Msa0078360;Name=Msa0078360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.91|1|1|1|12|196|378 |
| chr1_2 | exon | 55802468 | 55802611 | 55802468 | ID=Msa0078360-mRNA-1:exon:17428;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55804059 | 55804172 | 55804059 | ID=Msa0078360-mRNA-1:exon:17429;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55804983 | 55805066 | 55804983 | ID=Msa0078360-mRNA-1:exon:17430;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55805295 | 55805345 | 55805295 | ID=Msa0078360-mRNA-1:exon:17431;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55805555 | 55805584 | 55805555 | ID=Msa0078360-mRNA-1:exon:17432;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55807333 | 55807395 | 55807333 | ID=Msa0078360-mRNA-1:exon:17433;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55807511 | 55807576 | 55807511 | ID=Msa0078360-mRNA-1:exon:17434;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55807698 | 55807826 | 55807698 | ID=Msa0078360-mRNA-1:exon:17435;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55808019 | 55808054 | 55808019 | ID=Msa0078360-mRNA-1:exon:17436;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55808478 | 55808597 | 55808478 | ID=Msa0078360-mRNA-1:exon:17437;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55808731 | 55808919 | 55808731 | ID=Msa0078360-mRNA-1:exon:17438;Parent=Msa0078360-mRNA-1 |
| chr1_2 | exon | 55809560 | 55809866 | 55809560 | ID=Msa0078360-mRNA-1:exon:17439;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55802468 | 55802611 | 55802468 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55804059 | 55804172 | 55804059 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55804983 | 55805066 | 55804983 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55805295 | 55805345 | 55805295 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55805555 | 55805584 | 55805555 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55807333 | 55807395 | 55807333 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55807511 | 55807576 | 55807511 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55807698 | 55807826 | 55807698 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55808019 | 55808054 | 55808019 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55808478 | 55808597 | 55808478 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55808731 | 55808919 | 55808731 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | CDS | 55809560 | 55809670 | 55809560 | ID=Msa0078360-mRNA-1:cds;Parent=Msa0078360-mRNA-1 |
| chr1_2 | three_prime_UTR | 55809671 | 55809866 | 55809671 | ID=Msa0078360-mRNA-1:three_prime_utr;Parent=Msa0078360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
