AlfalfaGEDB | Msa0037410

M. sativa cultivar zhongmu-4 / Msa0037410

KEGG: K07897
GO: -
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037410	XP_013469580.1	94.686	207	2	1	1	198	1	207	1.14e-141	403

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037410	sp\|Q41640\|RAB7_VIGAC	88.462	208	12	3	1	198	1	206	1.14e-132	373

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016540	Msa0037410	0.811183	7.950478e-51	-8.615850e-47
Msa0032020	Msa0037410	0.812454	4.204876e-51	-8.615850e-47
Msa0037410	Msa0045730	0.800439	1.440499e-48	-8.615850e-47
Msa0037410	Msa0062350	0.807177	5.740848e-50	-8.615850e-47
Msa0037410	Msa0069440	0.813796	2.135413e-51	-8.615850e-47
Msa0037410	Msa0078360	0.814330	1.628019e-51	-8.615850e-47
Msa0037410	Msa0116130	0.830598	2.683583e-55	-8.615850e-47
Msa0037410	Msa0118710	0.802448	5.583852e-49	-8.615850e-47
Msa0037410	Msa0142410	0.800105	1.684376e-48	-8.615850e-47
Msa0037410	Msa0152870	0.805012	1.639136e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037410	MtrunA17_Chr1g0201121	94.686	207	2	1	1	198	1	207	1.05e-145	403
Msa0037410	MtrunA17_Chr6g0466301	85.096	208	19	3	1	198	1	206	2.23e-127	357
Msa0037410	MtrunA17_Chr6g0465491	85.096	208	19	3	1	198	1	206	2.23e-127	357
Msa0037410	MtrunA17_Chr8g0383261	69.417	206	52	2	2	198	6	209	8.00e-105	300
Msa0037410	MtrunA17_Chr2g0331691	70.149	201	44	2	4	195	6	199	1.05e-101	292
Msa0037410	MtrunA17_Chr4g0004661	68.599	207	56	1	1	198	57	263	1.74e-101	293
Msa0037410	MtrunA17_Chr4g0034871	67.943	209	53	3	1	198	1	206	9.37e-99	284
Msa0037410	MtrunA17_Chr6g0466161	70.000	180	52	1	19	198	10	187	2.33e-86	253
Msa0037410	MtrunA17_Chr6g0465471	69.444	180	53	1	19	198	10	187	1.14e-85	251
Msa0037410	MtrunA17_Chr6g0466431	72.277	101	28	0	1	101	1	101	4.67e-52	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0037410	AT4G09720.1	78.261	207	35	2	1	198	1	206	5.89e-119	336
Msa0037410	AT1G22740.1	78.261	207	32	2	1	198	1	203	5.66e-116	328
Msa0037410	AT4G09720.4	76.415	212	35	3	1	198	1	211	2.01e-115	327
Msa0037410	AT4G09720.3	74.312	218	35	3	1	198	1	217	2.15e-115	327
Msa0037410	AT4G09720.6	81.395	172	31	1	27	198	2	172	6.13e-104	296
Msa0037410	AT4G09720.5	81.395	172	31	1	27	198	2	172	6.13e-104	296
Msa0037410	AT4G09720.2	81.395	172	31	1	27	198	2	172	6.13e-104	296
Msa0037410	AT1G52280.1	68.900	209	51	3	1	198	1	206	7.43e-101	290
Msa0037410	AT3G16100.1	67.464	209	54	3	1	198	1	206	2.37e-99	286
Msa0037410	AT3G18820.1	66.986	209	55	3	1	198	1	206	4.12e-97	281

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Find 78 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCAACTCCAAGACTT+TGG	0.454601	1_1:-66401139	None:intergenic
AAAAGTGAGTAGTTTATATA+TGG	0.396519	1_1:-66399979	None:intergenic
AAACAATAGTACTATCAAAA+AGG	0.261754	1_1:-66404859	None:intergenic
AACAAGATTGATATTGATGG+CGG	0.609685	1_1:+66402034	Msa0037410:CDS
AAGGACTGGTGTGCTTCAAA+AGG	0.438389	1_1:+66402160	Msa0037410:CDS
AATGACATAGCTGGTTACGG+TGG	0.700311	1_1:-66400329	None:intergenic
AATGGAAATGCCCTTGTATC+AGG	0.343477	1_1:-66401998	None:intergenic
AATTTGAAACACAGCATTGA+AGG	0.485101	1_1:-66404758	None:intergenic
ACAAGATTGATATTGATGGC+GGG	0.576782	1_1:+66402035	Msa0037410:CDS
ACAATTTACCCACACAATCA+TGG	0.519807	1_1:-66404822	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCACACTTAATTGTTCAC+GGG	+	chr1_1:66400557-66400576	Msa0037410:intron	30.0%
AACCTTAAAGAAGTCAAATC+AGG	-	chr1_1:66400804-66400823	None:intergenic	30.0%
TTATGGTTATGACGAGAAAA+AGG	+	chr1_1:66401364-66401383	Msa0037410:intron	30.0%
GACATTAAAATGAATGTAGC+TGG	+	chr1_1:66401423-66401442	Msa0037410:intron	30.0%
CTTACAAAAAGTCAGAATCT+TGG	+	chr1_1:66401454-66401473	Msa0037410:intron	30.0%
TCACAACCTGACTAATTTAT+AGG	-	chr1_1:66401645-66401664	None:intergenic	30.0%
GCATTTCCATTTATATTGCT+TGG	+	chr1_1:66402010-66402029	Msa0037410:CDS	30.0%
GGAAACAAGATTGATATTGA+TGG	+	chr1_1:66402031-66402050	Msa0037410:CDS	30.0%
AACAAGATTGATATTGATGG+CGG	+	chr1_1:66402034-66402053	Msa0037410:CDS	30.0%
ATTAAGGAAACTTAGAAGTG+AGG	-	chr1_1:66402087-66402106	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	66399980	66405121	66399980	ID=Msa0037410;Name=Msa0037410
chr1_1	mRNA	66399980	66405121	66399980	ID=Msa0037410-mRNA-1;Parent=Msa0037410;Name=Msa0037410-mRNA-1;_AED=0.17;_eAED=0.17;_QI=364\|0.8\|1\|1\|1\|1\|6\|394\|198
chr1_1	exon	66399980	66400396	66399980	ID=Msa0037410-mRNA-1:exon:21488;Parent=Msa0037410-mRNA-1
chr1_1	exon	66400899	66400998	66400899	ID=Msa0037410-mRNA-1:exon:21489;Parent=Msa0037410-mRNA-1
chr1_1	exon	66401110	66401256	66401110	ID=Msa0037410-mRNA-1:exon:21490;Parent=Msa0037410-mRNA-1
chr1_1	exon	66401989	66402069	66401989	ID=Msa0037410-mRNA-1:exon:21491;Parent=Msa0037410-mRNA-1
chr1_1	exon	66402142	66402287	66402142	ID=Msa0037410-mRNA-1:exon:21492;Parent=Msa0037410-mRNA-1
chr1_1	exon	66404658	66405121	66404658	ID=Msa0037410-mRNA-1:exon:21493;Parent=Msa0037410-mRNA-1
chr1_1	five_prime_UTR	66399980	66400343	66399980	ID=Msa0037410-mRNA-1:five_prime_utr;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66400344	66400396	66400344	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66400899	66400998	66400899	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66401110	66401256	66401110	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66401989	66402069	66401989	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66402142	66402287	66402142	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	CDS	66404658	66404727	66404658	ID=Msa0037410-mRNA-1:cds;Parent=Msa0037410-mRNA-1
chr1_1	three_prime_UTR	66404728	66405121	66404728	ID=Msa0037410-mRNA-1:three_prime_utr;Parent=Msa0037410-mRNA-1

Gene Sequence

>Msa0037410

ATGTCATTGCGCAGACGAACCTTGCTCAAGGTCATTGTTCTCGGCGATAGCGGATATGTGCACAACAAGTTTAGTCAGCAGTATAAGGCAACAATTGGTGCTGATTTTGTCACTAAAGAACTTCAAATTGACGACAGACTCGTCACACTACAAATATGGGACACTGCTGGACAAGAGAGATTCCAAAGTCTTGGAGTTGCGTTTTATAGAGGGGCGGATTGCTGTGTTCTTGCGTATGATGTGAACGTCATGAGGTCGTTTGATTCACTTGACAACTGGCACGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATACAAGGGCATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATGGCGGGAATAGTCGAGTGGTTTCTGAGAAGAAAGCAAAGGACTGGTGTGCTTCAAAAGGGAATATTCCCTACTTTGAGACATCTGCAAAAGAGGATTACAATGTTGATGCTGCATTCTTGTGTATTGCAAAGACTGCCCTGGCCAATGAGCGTGAACAGGACATATATTTTCAAGGGATTCCTGAGGCGGTTCCAGAGAGTGAGCAAAGTGGTGGTGGTGGATGTGCATGCTGA

Protein sequence

>Msa0037410

MSLRRRTLLKVIVLGDSGYVHNKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMRSFDSLDNWHEEFLKQANPPDTRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAAFLCIAKTALANEREQDIYFQGIPEAVPESEQSGGGGCAC*