Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043630 | XP_013466130.1 | 97.887 | 284 | 3 | 1 | 1 | 281 | 1 | 284 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043630 | sp|O23712|PSA1B_ARATH | 78.445 | 283 | 53 | 2 | 1 | 281 | 1 | 277 | 6.40e-159 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043630 | I3RZQ6 | 97.887 | 284 | 3 | 1 | 1 | 281 | 1 | 284 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003870 | Msa1043630 | 0.904463 | 1.196104e-79 | -8.615850e-47 |
| Msa0033880 | Msa1043630 | 0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0078360 | Msa1043630 | 0.801331 | 9.471110e-49 | -8.615850e-47 |
| Msa0633570 | Msa1043630 | 0.804768 | 1.843645e-49 | -8.615850e-47 |
| Msa0729200 | Msa1043630 | 0.810949 | 8.936328e-51 | -8.615850e-47 |
| Msa0769590 | Msa1043630 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0144420 | Msa1043630 | 0.846612 | 1.946659e-59 | -8.615850e-47 |
| Msa0144430 | Msa1043630 | 0.836070 | 1.160411e-56 | -8.615850e-47 |
| Msa0146420 | Msa1043630 | 0.944000 | 4.348429e-103 | -8.615850e-47 |
| Msa0174000 | Msa1043630 | 0.802091 | 6.611583e-49 | -8.615850e-47 |
| Msa1043630 | Msa1074110 | 0.809648 | 1.705368e-50 | -8.615850e-47 |
| Msa1043630 | Msa1078890 | 0.812336 | 4.462950e-51 | -8.615850e-47 |
| Msa1043630 | Msa1123350 | 0.816605 | 5.072543e-52 | -8.615850e-47 |
| Msa1043630 | Msa1206650 | 0.804297 | 2.311605e-49 | -8.615850e-47 |
| Msa1043630 | Msa1298100 | 0.828021 | 1.133036e-54 | -8.615850e-47 |
| Msa1043630 | Msa1374170 | 0.971165 | 9.790865e-133 | -8.615850e-47 |
| Msa1043630 | Msa1382670 | 0.978534 | 5.011541e-146 | -8.615850e-47 |
| Msa1043630 | Msa1426370 | 0.843373 | 1.458604e-58 | -8.615850e-47 |
| Msa1043630 | Msa1426490 | 0.821495 | 3.917752e-53 | -8.615850e-47 |
| Msa0245580 | Msa1043630 | 0.830060 | 3.631873e-55 | -8.615850e-47 |
| Msa0262480 | Msa1043630 | 0.809721 | 1.644815e-50 | -8.615850e-47 |
| Msa0300350 | Msa1043630 | 0.801154 | 1.029166e-48 | -8.615850e-47 |
| Msa0968440 | Msa1043630 | 0.811930 | 5.471024e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043630 | MtrunA17_Chr1g0155371 | 97.887 | 284 | 3 | 1 | 1 | 281 | 1 | 284 | 0.0 | 573 |
| Msa1043630 | MtrunA17_Chr4g0004521 | 87.179 | 273 | 21 | 2 | 20 | 281 | 7 | 276 | 7.44e-160 | 445 |
| Msa1043630 | MtrunA17_Chr4g0027841 | 75.102 | 245 | 52 | 4 | 1 | 241 | 83 | 322 | 1.49e-124 | 358 |
| Msa1043630 | MtrunA17_Chr3g0142511 | 86.826 | 167 | 20 | 1 | 115 | 281 | 25 | 189 | 3.28e-103 | 298 |
| Msa1043630 | MtrunA17_Chr1g0210811 | 45.902 | 183 | 94 | 2 | 1 | 178 | 3 | 185 | 5.95e-47 | 157 |
| Msa1043630 | MtrunA17_Chr7g0243311 | 38.785 | 214 | 125 | 3 | 5 | 214 | 4 | 215 | 3.09e-43 | 147 |
| Msa1043630 | MtrunA17_Chr5g0401801 | 42.135 | 178 | 99 | 2 | 5 | 178 | 4 | 181 | 5.98e-42 | 144 |
| Msa1043630 | MtrunA17_Chr0c02g0489661 | 35.111 | 225 | 141 | 3 | 1 | 223 | 1 | 222 | 1.70e-41 | 143 |
| Msa1043630 | MtrunA17_Chr6g0459741 | 40.838 | 191 | 108 | 3 | 6 | 193 | 8 | 196 | 7.94e-39 | 136 |
| Msa1043630 | MtrunA17_Chr2g0308541 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 1.26e-38 | 135 |
| Msa1043630 | MtrunA17_Chr8g0360781 | 35.217 | 230 | 143 | 5 | 6 | 230 | 9 | 237 | 1.76e-38 | 135 |
| Msa1043630 | MtrunA17_Chr8g0371571 | 37.736 | 212 | 123 | 4 | 5 | 210 | 3 | 211 | 6.47e-38 | 134 |
| Msa1043630 | MtrunA17_Chr2g0283841 | 35.681 | 213 | 128 | 4 | 4 | 210 | 2 | 211 | 3.37e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043630 | AT1G47250.1 | 78.445 | 283 | 53 | 2 | 1 | 281 | 1 | 277 | 6.50e-160 | 446 |
| Msa1043630 | AT5G42790.1 | 86.134 | 238 | 33 | 0 | 1 | 238 | 1 | 238 | 6.88e-159 | 443 |
| Msa1043630 | AT1G53850.1 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.49e-46 | 155 |
| Msa1043630 | AT1G53850.2 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.49e-46 | 155 |
| Msa1043630 | AT3G14290.1 | 45.355 | 183 | 95 | 2 | 1 | 178 | 3 | 185 | 2.51e-46 | 155 |
| Msa1043630 | AT3G22110.1 | 36.017 | 236 | 141 | 4 | 5 | 232 | 4 | 237 | 2.50e-43 | 148 |
| Msa1043630 | AT1G16470.1 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.46e-40 | 140 |
| Msa1043630 | AT1G16470.2 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.46e-40 | 140 |
| Msa1043630 | AT1G79210.1 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.40e-40 | 139 |
| Msa1043630 | AT1G79210.2 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.40e-40 | 139 |
| Msa1043630 | AT1G79210.3 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.40e-40 | 139 |
| Msa1043630 | AT5G35590.1 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 2.00e-38 | 135 |
| Msa1043630 | AT5G66140.1 | 38.208 | 212 | 122 | 4 | 5 | 210 | 3 | 211 | 4.19e-37 | 132 |
| Msa1043630 | AT2G05840.1 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 4.44e-37 | 132 |
| Msa1043630 | AT3G51260.1 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 5.66e-36 | 129 |
| Msa1043630 | AT3G51260.2 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 6.60e-36 | 129 |
| Msa1043630 | AT2G05840.2 | 36.181 | 199 | 123 | 3 | 6 | 200 | 9 | 207 | 1.44e-35 | 127 |
| Msa1043630 | AT2G27020.1 | 37.895 | 190 | 115 | 2 | 6 | 193 | 8 | 196 | 8.34e-35 | 126 |
| Msa1043630 | AT2G05840.3 | 36.170 | 188 | 116 | 3 | 6 | 189 | 9 | 196 | 1.21e-33 | 122 |
| Msa1043630 | AT2G27020.2 | 37.895 | 190 | 115 | 2 | 6 | 193 | 110 | 298 | 1.81e-33 | 125 |
| Msa1043630 | AT4G15165.1 | 33.654 | 208 | 87 | 7 | 5 | 204 | 4 | 168 | 2.40e-25 | 100 |
Find 104 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTATTTACTGAAATTC+TGG | 0.213745 | 7_2:+1831389 | Msa1043630:three_prime_UTR |
| TGGTGAGCCTTTCCACATTT+TGG | 0.215333 | 7_2:+1830988 | Msa1043630:CDS |
| CGCGAGAACCACGTGAGTTT+TGG | 0.220139 | 7_2:-1827915 | None:intergenic |
| ACAAGCTGCAAAGACATATT+TGG | 0.303194 | 7_2:+1830835 | Msa1043630:CDS |
| TCCTGCTCAGCTGCAGCCTC+AGG | 0.321152 | 7_2:-1831082 | None:intergenic |
| TAACCTAACCTGAGCCTTAT+CGG | 0.340591 | 7_2:-1828134 | None:intergenic |
| ACTGTTATTTGAAAATGAAT+AGG | 0.340974 | 7_2:+1831219 | Msa1043630:three_prime_UTR |
| GCTGCCACAGATCAGGCTTC+TGG | 0.352014 | 7_2:+1831106 | Msa1043630:CDS |
| CGATCATGGAAGCGTCCTTA+TGG | 0.372743 | 7_2:+1830704 | Msa1043630:CDS |
| ATGAGAAGATAGTTCAGAAT+TGG | 0.382855 | 7_2:-1827951 | None:intergenic |
| GTAGCTGGATTAGATGAATC+AGG | 0.390011 | 7_2:+1830740 | Msa1043630:CDS |
| TAAACAAAAGGAAAAGGAAA+AGG | 0.398972 | 7_2:+1827715 | Msa1043630:five_prime_UTR |
| GGCGTTGGACTTCTAGTAGC+TGG | 0.403744 | 7_2:+1830725 | Msa1043630:CDS |
| AAAGAGTAAACAAAAGGAAA+AGG | 0.406910 | 7_2:+1827709 | Msa1043630:five_prime_UTR |
| CGCTTGGGCAGTTGTAATAG+AGG | 0.407257 | 7_2:-1830769 | None:intergenic |
| GCTGCAGCCTCAGGTTCAGC+AGG | 0.411570 | 7_2:-1831073 | None:intergenic |
| TATCAACAATCGGGTCCCTT+TGG | 0.415540 | 7_2:+1831455 | Msa1043630:three_prime_UTR |
| TATTTCTTAATATCAACAAT+CGG | 0.423419 | 7_2:+1831445 | Msa1043630:three_prime_UTR |
| ACCTGAGGCTGCAGCTGAGC+AGG | 0.426509 | 7_2:+1831081 | Msa1043630:CDS |
| CTGGATAAAATGTTGATTGA+AGG | 0.429409 | 7_2:+1831408 | Msa1043630:three_prime_UTR |
| TCATCAGAAGAAGATCTTCA+AGG | 0.432131 | 7_2:+1827970 | Msa1043630:CDS |
| TAGATAAAATTGTAAATAGT+AGG | 0.434101 | 7_2:-1831365 | None:intergenic |
| GCAGGATGCTGCCACAGATC+AGG | 0.446173 | 7_2:+1831099 | Msa1043630:CDS |
| TTAAATTATCAAATCTCCAT+TGG | 0.446472 | 7_2:-1831172 | None:intergenic |
| AAGCAAGGTTCAGCAGCAAT+AGG | 0.446969 | 7_2:+1827884 | Msa1043630:CDS |
| ACCGGCGGGAAGACTCTTCC+AGG | 0.447398 | 7_2:+1827838 | Msa1043630:CDS |
| CATCTTTGATCAGATCTTCC+CGG | 0.448900 | 7_2:-1830889 | None:intergenic |
| CAGATCAAAGTGGTGCTGGT+GGG | 0.452356 | 7_2:+1831131 | Msa1043630:CDS |
| GCCGATCACAAAATCAAAAT+CGG | 0.458938 | 7_2:+1827772 | Msa1043630:five_prime_UTR |
| CCTTGCAAGGTGAAAAGCTC+AGG | 0.463589 | 7_2:+1830933 | Msa1043630:CDS |
| GCATTCAGATCTCATGTAAC+GGG | 0.468182 | 7_2:-1828050 | None:intergenic |
| GATCAGATCTTCCCGGGAGG+AGG | 0.468370 | 7_2:-1830882 | None:intergenic |
| TGGATAAAATGTTGATTGAA+GGG | 0.470632 | 7_2:+1831409 | Msa1043630:three_prime_UTR |
| ACGGCCATCGGCGGTGAGAC+CGG | 0.470971 | 7_2:-1828020 | None:intergenic |
| GGTGCTGGTGGGGCTGACCA+AGG | 0.471608 | 7_2:+1831142 | Msa1043630:CDS |
| ATTTCTTAATATCAACAATC+GGG | 0.480176 | 7_2:+1831446 | Msa1043630:three_prime_UTR |
| GCAGATCAAAGTGGTGCTGG+TGG | 0.482449 | 7_2:+1831130 | Msa1043630:CDS |
| CGTCGTTCAGCTCGCCGATA+AGG | 0.485800 | 7_2:+1828120 | Msa1043630:CDS |
| ATTCAAAATAGTTTCCGCTT+GGG | 0.489662 | 7_2:-1830784 | None:intergenic |
| ACTAGAAGTCCAACGCCATA+AGG | 0.491926 | 7_2:-1830719 | None:intergenic |
| AGGTTTGCACTCAGCGATCA+TGG | 0.494067 | 7_2:+1830690 | Msa1043630:intron |
| TAAAGAAAAGAGTAAACAAA+AGG | 0.496946 | 7_2:+1827703 | Msa1043630:five_prime_UTR |
| ACAACTTCACAGCCTCCTCC+CGG | 0.497935 | 7_2:+1830870 | Msa1043630:CDS |
| GAATATCAGGCATTTGCAAT+CGG | 0.498552 | 7_2:+1830803 | Msa1043630:CDS |
| CTTCCATGGCGTATTCCACC+TGG | 0.500589 | 7_2:-1827856 | None:intergenic |
| TATTCAAAATAGTTTCCGCT+TGG | 0.508568 | 7_2:-1830785 | None:intergenic |
| ACCATTGCTGTGGTTGGAGT+TGG | 0.514251 | 7_2:+1830968 | Msa1043630:CDS |
| AAATTGTAAATAGTAGGTTC+AGG | 0.514635 | 7_2:-1831359 | None:intergenic |
| TTCAAGGTTGATGATCATAT+CGG | 0.515192 | 7_2:+1827986 | Msa1043630:CDS |
| ATCTTTGATCAGATCTTCCC+GGG | 0.521887 | 7_2:-1830888 | None:intergenic |
| TTGTTTCTGAAATTCATCCA+TGG | 0.524273 | 7_2:+1831306 | Msa1043630:three_prime_UTR |
| AAGATGCACTCATTGCAACT+AGG | 0.529448 | 7_2:+1830906 | Msa1043630:CDS |
| AGATCAAAGTGGTGCTGGTG+GGG | 0.531118 | 7_2:+1831132 | Msa1043630:CDS |
| GGTGCAGATCAAAGTGGTGC+TGG | 0.531835 | 7_2:+1831127 | Msa1043630:CDS |
| TTTCAAGTTGAGTGTGTCAT+GGG | 0.533952 | 7_2:+1831242 | Msa1043630:three_prime_UTR |
| TGGAAGCGTCCTTATGGCGT+TGG | 0.534162 | 7_2:+1830710 | Msa1043630:CDS |
| AACCACAGCAATGGTGCATA+CGG | 0.536605 | 7_2:-1830960 | None:intergenic |
| CTCTATTACAACTGCCCAAG+CGG | 0.540260 | 7_2:+1830770 | Msa1043630:CDS |
| ACGAGTCTACCAACGGGAAG+CGG | 0.541672 | 7_2:-1828100 | None:intergenic |
| GTTTCAAGTTGAGTGTGTCA+TGG | 0.550390 | 7_2:+1831241 | Msa1043630:three_prime_UTR |
| AGATGCACTCATTGCAACTA+GGG | 0.552459 | 7_2:+1830907 | Msa1043630:CDS |
| TCAGCTCGCCGATAAGGCTC+AGG | 0.552948 | 7_2:+1828126 | Msa1043630:CDS |
| CATATCGGCGTTGCCATCGC+CGG | 0.553468 | 7_2:+1828001 | Msa1043630:CDS |
| AATCGAAACAATGTACCAAA+GGG | 0.553783 | 7_2:-1831470 | None:intergenic |
| GTATGCACCATTGCTGTGGT+TGG | 0.557714 | 7_2:+1830962 | Msa1043630:CDS |
| ATCGCCGGTCTCACCGCCGA+TGG | 0.557766 | 7_2:+1828016 | Msa1043630:CDS |
| ACCTTGCTTAACTGCTTCCA+TGG | 0.560856 | 7_2:-1827870 | None:intergenic |
| TGCATTCAGATCTCATGTAA+CGG | 0.564752 | 7_2:-1828051 | None:intergenic |
| CGACGTAACAACATGGTCAC+CGG | 0.568536 | 7_2:+1827820 | Msa1043630:CDS |
| AATTTAAGATCCAGTACTTG+AGG | 0.570467 | 7_2:+1831188 | Msa1043630:three_prime_UTR |
| AAATCGAAACAATGTACCAA+AGG | 0.571051 | 7_2:-1831471 | None:intergenic |
| TGAACGACGAGTCTACCAAC+GGG | 0.572203 | 7_2:-1828106 | None:intergenic |
| TAGCTGGATTAGATGAATCA+GGG | 0.572392 | 7_2:+1830741 | Msa1043630:CDS |
| ACGGGAAAGAACACGGCCAT+CGG | 0.576909 | 7_2:-1828032 | None:intergenic |
| CAGTTTCCTGATCCAAAATG+TGG | 0.582560 | 7_2:-1831000 | None:intergenic |
| TATGAATCTCCGCTTCCCGT+TGG | 0.585267 | 7_2:+1828091 | Msa1043630:CDS |
| AGCTGCACCTGCTGAACCTG+AGG | 0.586152 | 7_2:+1831066 | Msa1043630:CDS |
| GGATAAAATGTTGATTGAAG+GGG | 0.586164 | 7_2:+1831410 | Msa1043630:three_prime_UTR |
| CAACTTCACAGCCTCCTCCC+GGG | 0.586785 | 7_2:+1830871 | Msa1043630:CDS |
| TGACCAAGGTGGTTCTCCAA+TGG | 0.586988 | 7_2:+1831156 | Msa1043630:CDS |
| ATCGGCGGTGAGACCGGCGA+TGG | 0.592757 | 7_2:-1828014 | None:intergenic |
| TCCTGATCCAAAATGTGGAA+AGG | 0.593184 | 7_2:-1830995 | None:intergenic |
| ACCAACTCCAACCACAGCAA+TGG | 0.594452 | 7_2:-1830969 | None:intergenic |
| AAGTTCACAGTGATCAGCCA+TGG | 0.599270 | 7_2:-1831323 | None:intergenic |
| GCTGGTGGGGCTGACCAAGG+TGG | 0.603851 | 7_2:+1831145 | Msa1043630:CDS |
| CTTCCAGGTGGAATACGCCA+TGG | 0.612270 | 7_2:+1827853 | Msa1043630:CDS |
| CTCCGTATGCACCATTGCTG+TGG | 0.615712 | 7_2:+1830958 | Msa1043630:CDS |
| GCAACTAGGGAGTCCTTGCA+AGG | 0.618439 | 7_2:+1830920 | Msa1043630:CDS |
| TCTCCATTGGAGAACCACCT+TGG | 0.619130 | 7_2:-1831159 | None:intergenic |
| ACCTGGAAGAGTCTTCCCGC+CGG | 0.625765 | 7_2:-1827839 | None:intergenic |
| GTAACAACATGGTCACCGGC+GGG | 0.626802 | 7_2:+1827824 | Msa1043630:CDS |
| CGTAACAACATGGTCACCGG+CGG | 0.638962 | 7_2:+1827823 | Msa1043630:CDS |
| GGAAAGAACACGGCCATCGG+CGG | 0.645115 | 7_2:-1828029 | None:intergenic |
| TGCACCAGAAGCCTGATCTG+TGG | 0.645294 | 7_2:-1831110 | None:intergenic |
| TCATGTAACGGGAAAGAACA+CGG | 0.645339 | 7_2:-1828039 | None:intergenic |
| CTGAACGACGAGTCTACCAA+CGG | 0.653690 | 7_2:-1828107 | None:intergenic |
| ACGATACCGACGTAACAACA+TGG | 0.654506 | 7_2:+1827813 | Msa1043630:CDS |
| GCCATGGAAGCAGTTAAGCA+AGG | 0.656151 | 7_2:+1827869 | Msa1043630:CDS |
| AGCTGGATTAGATGAATCAG+GGG | 0.660204 | 7_2:+1830742 | Msa1043630:CDS |
| CGGTGACCATGTTGTTACGT+CGG | 0.692398 | 7_2:-1827819 | None:intergenic |
| GCTTCTGGTGCAGATCAAAG+TGG | 0.697173 | 7_2:+1831121 | Msa1043630:CDS |
| GGCGGGAAGACTCTTCCAGG+TGG | 0.706418 | 7_2:+1827841 | Msa1043630:CDS |
| TCTCCGATCCAAAACTCACG+TGG | 0.728289 | 7_2:+1827907 | Msa1043630:CDS |
| TTTGATCAGATCTTCCCGGG+AGG | 0.729135 | 7_2:-1830885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAATTAAGTAATTTTAA+TGG | + | chr7_2:1828260-1828279 | Msa1043630:intron | 10.0% |
| !! | AAATAATAACAAAATCAAAC+AGG | - | chr7_2:1828992-1829011 | None:intergenic | 15.0% |
| !!! | ACTATTTTGTATACTTAATA+TGG | + | chr7_2:1829471-1829490 | Msa1043630:intron | 15.0% |
| !! | ATTCAATAAACTAAAACATT+TGG | + | chr7_2:1830454-1830473 | Msa1043630:intron | 15.0% |
| !! | TAGATAAAATTGTAAATAGT+AGG | - | chr7_2:1831368-1831387 | None:intergenic | 15.0% |
| !! | TATTTCTTAATATCAACAAT+CGG | + | chr7_2:1831445-1831464 | Msa1043630:three_prime_UTR | 15.0% |
| !! | TAAAGAAAAGAGTAAACAAA+AGG | + | chr7_2:1827703-1827722 | Msa1043630:five_prime_UTR | 20.0% |
| !! | TTTAACTCAGTAATTCAATT+AGG | + | chr7_2:1828238-1828257 | Msa1043630:intron | 20.0% |
| !! | AAATACAGTGTTAACAAAAA+GGG | - | chr7_2:1828407-1828426 | None:intergenic | 20.0% |
| !! | AAACATTAGAGAATACATTT+CGG | - | chr7_2:1828814-1828833 | None:intergenic | 20.0% |
| !! | TTCTCTAATGTTTACTATAT+AGG | + | chr7_2:1828821-1828840 | Msa1043630:intron | 20.0% |
| !! | ATATAGAAACAGCATAAATA+GGG | - | chr7_2:1830399-1830418 | None:intergenic | 20.0% |
| !! | TATATAGAAACAGCATAAAT+AGG | - | chr7_2:1830400-1830419 | None:intergenic | 20.0% |
| !!! | GTGTTTTATTAATAGAAAGT+TGG | + | chr7_2:1830527-1830546 | Msa1043630:intron | 20.0% |
| !! | ATATTACATGGAAAAGAATA+AGG | + | chr7_2:1830596-1830615 | Msa1043630:intron | 20.0% |
| !! | CAAAATTACATCATAAATAC+TGG | - | chr7_2:1830664-1830683 | None:intergenic | 20.0% |
| !!! | ATTTATGATGTAATTTTGAG+TGG | + | chr7_2:1830666-1830685 | Msa1043630:intron | 20.0% |
| !! | TTAAATTATCAAATCTCCAT+TGG | - | chr7_2:1831175-1831194 | None:intergenic | 20.0% |
| !!! | ACTGTTATTTGAAAATGAAT+AGG | + | chr7_2:1831219-1831238 | Msa1043630:three_prime_UTR | 20.0% |
| !! | ATTTCTTAATATCAACAATC+GGG | + | chr7_2:1831446-1831465 | Msa1043630:three_prime_UTR | 20.0% |
| ! | AAAGAGTAAACAAAAGGAAA+AGG | + | chr7_2:1827709-1827728 | Msa1043630:five_prime_UTR | 25.0% |
| ! | TAAACAAAAGGAAAAGGAAA+AGG | + | chr7_2:1827715-1827734 | Msa1043630:five_prime_UTR | 25.0% |
| ! | TTGTTCGGATTATTCTAATT+AGG | + | chr7_2:1828184-1828203 | Msa1043630:intron | 25.0% |
| ! | TGTTCGGATTATTCTAATTA+GGG | + | chr7_2:1828185-1828204 | Msa1043630:intron | 25.0% |
| ! | TAGTCGAGATTATTTACTTT+AGG | + | chr7_2:1828346-1828365 | Msa1043630:intron | 25.0% |
| ! | CAAATACAGTGTTAACAAAA+AGG | - | chr7_2:1828408-1828427 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr7_2:1828518-1828537 | Msa1043630:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr7_2:1828629-1828648 | Msa1043630:intron | 25.0% |
| !! | TTTCAGTTTTCAACTTTTGT+TGG | + | chr7_2:1828666-1828685 | Msa1043630:intron | 25.0% |
| !! | AAACGTTTGAAACTATGTTT+AGG | + | chr7_2:1828773-1828792 | Msa1043630:intron | 25.0% |
| ! | AAAATACTATGATGCTTCTA+TGG | + | chr7_2:1828948-1828967 | Msa1043630:intron | 25.0% |
| !!! | CATCAAAAAGAGTATGATTT+TGG | - | chr7_2:1829217-1829236 | None:intergenic | 25.0% |
| !! | ATCATACTCTTTTTGATGTT+TGG | + | chr7_2:1829219-1829238 | Msa1043630:intron | 25.0% |
| ! | AGGTACAAAAATTATTTCAC+AGG | - | chr7_2:1829299-1829318 | None:intergenic | 25.0% |
| ! | ATTTATATACTTCTGGGTAT+AGG | - | chr7_2:1829391-1829410 | None:intergenic | 25.0% |
| ! | ACACACATTTATATACTTCT+GGG | - | chr7_2:1829397-1829416 | None:intergenic | 25.0% |
| ! | TGTATACTTAATATGGAAGT+AGG | + | chr7_2:1829478-1829497 | Msa1043630:intron | 25.0% |
| ! | GTATACTTAATATGGAAGTA+GGG | + | chr7_2:1829479-1829498 | Msa1043630:intron | 25.0% |
| !!! | TGTAAATGTTGTTTTGATAG+TGG | + | chr7_2:1829572-1829591 | Msa1043630:intron | 25.0% |
| !!! | TGACAGTCATTTTGTATTTA+AGG | - | chr7_2:1829835-1829854 | None:intergenic | 25.0% |
| !! | TGATTTGACTTAACTCTTAT+TGG | + | chr7_2:1830304-1830323 | Msa1043630:intron | 25.0% |
| !! | GATTTGACTTAACTCTTATT+GGG | + | chr7_2:1830305-1830324 | Msa1043630:intron | 25.0% |
| !!! | TAAAGTGTTAACAACACTTT+TGG | + | chr7_2:1830361-1830380 | Msa1043630:intron | 25.0% |
| ! | TATAGAAACAGCATAAATAG+GGG | - | chr7_2:1830398-1830417 | None:intergenic | 25.0% |
| ! | TTGAATGAATTAAATAGACC+AGG | - | chr7_2:1830440-1830459 | None:intergenic | 25.0% |
| !! | ATTTGGTTAGTTAATCAACA+TGG | + | chr7_2:1830471-1830490 | Msa1043630:intron | 25.0% |
| ! | TTATTAATAGAAAGTTGGAC+AGG | + | chr7_2:1830532-1830551 | Msa1043630:intron | 25.0% |
| ! | TATTAATAGAAAGTTGGACA+GGG | + | chr7_2:1830533-1830552 | Msa1043630:intron | 25.0% |
| ! | AAATTGTAAATAGTAGGTTC+AGG | - | chr7_2:1831362-1831381 | None:intergenic | 25.0% |
| ! | GATACTATTTACTGAAATTC+TGG | + | chr7_2:1831389-1831408 | Msa1043630:three_prime_UTR | 25.0% |
| !! | TGGATAAAATGTTGATTGAA+GGG | + | chr7_2:1831409-1831428 | Msa1043630:three_prime_UTR | 25.0% |
| !!! | TCCGATTTTGATTTTGTGAT+CGG | - | chr7_2:1827776-1827795 | None:intergenic | 30.0% |
| ATGAGAAGATAGTTCAGAAT+TGG | - | chr7_2:1827954-1827973 | None:intergenic | 30.0% | |
| !! | TTCAAGGTTGATGATCATAT+CGG | + | chr7_2:1827986-1828005 | Msa1043630:CDS | 30.0% |
| !!! | AATTGTAGCTAGGGTTTTTT+AGG | + | chr7_2:1828214-1828233 | Msa1043630:intron | 30.0% |
| !!! | ATTGTAGCTAGGGTTTTTTA+GGG | + | chr7_2:1828215-1828234 | Msa1043630:intron | 30.0% |
| !! | GATTTGATTTGTTATGCTTG+TGG | + | chr7_2:1828304-1828323 | Msa1043630:intron | 30.0% |
| TGACAGTGATTAGAATGAAA+TGG | + | chr7_2:1828426-1828445 | Msa1043630:intron | 30.0% | |
| GACAGTGATTAGAATGAAAT+GGG | + | chr7_2:1828427-1828446 | Msa1043630:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr7_2:1828470-1828489 | None:intergenic | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr7_2:1828630-1828649 | Msa1043630:intron | 30.0% | |
| TAATTGTGATTGAGAGAAGA+TGG | + | chr7_2:1828722-1828741 | Msa1043630:intron | 30.0% | |
| !! | ATCTAGAGGGAGTATATTTT+CGG | + | chr7_2:1828750-1828769 | Msa1043630:intron | 30.0% |
| TTGAATGTCTTGAGAATTTG+AGG | + | chr7_2:1829010-1829029 | Msa1043630:intron | 30.0% | |
| !!! | GAGAATTTGAGGTTTTTAGT+TGG | + | chr7_2:1829021-1829040 | Msa1043630:intron | 30.0% |
| !! | GTATGATTTTGGCAAAATCA+CGG | - | chr7_2:1829206-1829225 | None:intergenic | 30.0% |
| ! | CTTTTTGATGTTTGGTTGTT+TGG | + | chr7_2:1829227-1829246 | Msa1043630:intron | 30.0% |
| CACACACATTTATATACTTC+TGG | - | chr7_2:1829398-1829417 | None:intergenic | 30.0% | |
| ! | CAGAAGTATATAAATGTGTG+TGG | + | chr7_2:1829396-1829415 | Msa1043630:intron | 30.0% |
| !! | ATCACTTTTGAGCTGTTATT+TGG | + | chr7_2:1829443-1829462 | Msa1043630:intron | 30.0% |
| CATATGATAGAGATTAGAGA+CGG | + | chr7_2:1829626-1829645 | Msa1043630:intron | 30.0% | |
| ATATGATAGAGATTAGAGAC+GGG | + | chr7_2:1829627-1829646 | Msa1043630:intron | 30.0% | |
| TACGGTGTAGTTATTCAAAT+TGG | + | chr7_2:1829658-1829677 | Msa1043630:intron | 30.0% | |
| ACGGTGTAGTTATTCAAATT+GGG | + | chr7_2:1829659-1829678 | Msa1043630:intron | 30.0% | |
| !! | TGTTTTGTTACGATCCATTA+TGG | + | chr7_2:1829724-1829743 | Msa1043630:intron | 30.0% |
| TATCTTACTTTCATTCTCTG+TGG | + | chr7_2:1829792-1829811 | Msa1043630:intron | 30.0% | |
| TGATTTACTTAGCATTGTAG+TGG | + | chr7_2:1829933-1829952 | Msa1043630:intron | 30.0% | |
| !!! | GTTGTTTTAGTTGTTATCTC+AGG | + | chr7_2:1830136-1830155 | Msa1043630:intron | 30.0% |
| !! | TAACTTGCTTGTAGAATAAC+TGG | + | chr7_2:1830226-1830245 | Msa1043630:intron | 30.0% |
| ATAGTTACTATATGTGAACC+TGG | + | chr7_2:1830419-1830438 | Msa1043630:intron | 30.0% | |
| ATCTTGTCTTGCATATTACA+TGG | + | chr7_2:1830584-1830603 | Msa1043630:intron | 30.0% | |
| ATTCAAAATAGTTTCCGCTT+GGG | - | chr7_2:1830787-1830806 | None:intergenic | 30.0% | |
| TATTCAAAATAGTTTCCGCT+TGG | - | chr7_2:1830788-1830807 | None:intergenic | 30.0% | |
| !! | CGGAAACTATTTTGAATATC+AGG | + | chr7_2:1830790-1830809 | Msa1043630:CDS | 30.0% |
| !!! | TTGATACTTTTGAGATTGTG+AGG | + | chr7_2:1831035-1831054 | Msa1043630:CDS | 30.0% |
| !!! | TGATACTTTTGAGATTGTGA+GGG | + | chr7_2:1831036-1831055 | Msa1043630:CDS | 30.0% |
| ! | AATTTAAGATCCAGTACTTG+AGG | + | chr7_2:1831188-1831207 | Msa1043630:three_prime_UTR | 30.0% |
| !! | TTGTTTCTGAAATTCATCCA+TGG | + | chr7_2:1831306-1831325 | Msa1043630:three_prime_UTR | 30.0% |
| ! | CTGGATAAAATGTTGATTGA+AGG | + | chr7_2:1831408-1831427 | Msa1043630:three_prime_UTR | 30.0% |
| ! | GGATAAAATGTTGATTGAAG+GGG | + | chr7_2:1831410-1831429 | Msa1043630:three_prime_UTR | 30.0% |
| AATCGAAACAATGTACCAAA+GGG | - | chr7_2:1831473-1831492 | None:intergenic | 30.0% | |
| AAATCGAAACAATGTACCAA+AGG | - | chr7_2:1831474-1831493 | None:intergenic | 30.0% | |
| GCCGATCACAAAATCAAAAT+CGG | + | chr7_2:1827772-1827791 | Msa1043630:five_prime_UTR | 35.0% | |
| TCATCAGAAGAAGATCTTCA+AGG | + | chr7_2:1827970-1827989 | Msa1043630:CDS | 35.0% | |
| TGCATTCAGATCTCATGTAA+CGG | - | chr7_2:1828054-1828073 | None:intergenic | 35.0% | |
| ACAGAGGTAAAAACGGAAAA+CGG | - | chr7_2:1828164-1828183 | None:intergenic | 35.0% | |
| CGAACAAACAGAGGTAAAAA+CGG | - | chr7_2:1828171-1828190 | None:intergenic | 35.0% | |
| ! | CGTTTTTACCTCTGTTTGTT+CGG | + | chr7_2:1828169-1828188 | Msa1043630:intron | 35.0% |
| AGAATAATCCGAACAAACAG+AGG | - | chr7_2:1828180-1828199 | None:intergenic | 35.0% | |
| !!! | AGGGTTTTGAAATTGTAGCT+AGG | + | chr7_2:1828204-1828223 | Msa1043630:intron | 35.0% |
| !!! | GGGTTTTGAAATTGTAGCTA+GGG | + | chr7_2:1828205-1828224 | Msa1043630:intron | 35.0% |
| !! | ACTTTAGGATCTTAACTGAG+TGG | + | chr7_2:1828361-1828380 | Msa1043630:intron | 35.0% |
| CAGTGTTAACAAAAAGGGTT+TGG | - | chr7_2:1828402-1828421 | None:intergenic | 35.0% | |
| TGTAAGATTCAGTGTCCATT+TGG | + | chr7_2:1828452-1828471 | Msa1043630:intron | 35.0% | |
| GAAAACTGAAACAGACACTA+AGG | - | chr7_2:1828657-1828676 | None:intergenic | 35.0% | |
| ! | AGTTTTCAACTTTTGTTGGC+TGG | + | chr7_2:1828670-1828689 | Msa1043630:intron | 35.0% |
| ! | CTAATGACACGTTCTACTTT+TGG | - | chr7_2:1828867-1828886 | None:intergenic | 35.0% |
| !! | TCATTAGTTTCCTCTCCTTT+TGG | + | chr7_2:1828880-1828899 | Msa1043630:intron | 35.0% |
| !! | TCTCCTTTTGGTCTTTTTTG+CGG | + | chr7_2:1828892-1828911 | Msa1043630:intron | 35.0% |
| TATGATGCTTCTATGGTGTT+TGG | + | chr7_2:1828955-1828974 | Msa1043630:intron | 35.0% | |
| CGGTAAGTTTGACAAAATCA+CGG | + | chr7_2:1829135-1829154 | Msa1043630:intron | 35.0% | |
| GGTAAGTTTGACAAAATCAC+GGG | + | chr7_2:1829136-1829155 | Msa1043630:intron | 35.0% | |
| ATATACTTCTGGGTATAGGT+TGG | - | chr7_2:1829387-1829406 | None:intergenic | 35.0% | |
| AGTTCCGTTGACATTCATTA+GGG | - | chr7_2:1829698-1829717 | None:intergenic | 35.0% | |
| GATCCATTATGGATGTTCTA+GGG | + | chr7_2:1829735-1829754 | Msa1043630:intron | 35.0% | |
| ATCCATTATGGATGTTCTAG+GGG | + | chr7_2:1829736-1829755 | Msa1043630:intron | 35.0% | |
| TTCACTTTCCCATTACTATG+AGG | - | chr7_2:1829766-1829785 | None:intergenic | 35.0% | |
| ATGTCATTCTTTGATGCATC+TGG | + | chr7_2:1829866-1829885 | Msa1043630:intron | 35.0% | |
| ! | TCTTCTCTTTCAAGGTTTTG+AGG | + | chr7_2:1829893-1829912 | Msa1043630:intron | 35.0% |
| ATGCATAGAGAAATCCTGAA+GGG | + | chr7_2:1830071-1830090 | Msa1043630:intron | 35.0% | |
| !! | ATGATGTAATTTTGAGTGGC+AGG | + | chr7_2:1830670-1830689 | Msa1043630:intron | 35.0% |
| ! | TAGCTGGATTAGATGAATCA+GGG | + | chr7_2:1830741-1830760 | Msa1043630:CDS | 35.0% |
| GAATATCAGGCATTTGCAAT+CGG | + | chr7_2:1830803-1830822 | Msa1043630:CDS | 35.0% | |
| ACAAGCTGCAAAGACATATT+TGG | + | chr7_2:1830835-1830854 | Msa1043630:CDS | 35.0% | |
| ! | GTTTTTAACACCTCAAGTAC+TGG | - | chr7_2:1831201-1831220 | None:intergenic | 35.0% |
| !! | TTTCAAGTTGAGTGTGTCAT+GGG | + | chr7_2:1831242-1831261 | Msa1043630:three_prime_UTR | 35.0% |
| ! | TCATGTAACGGGAAAGAACA+CGG | - | chr7_2:1828042-1828061 | None:intergenic | 40.0% |
| GCATTCAGATCTCATGTAAC+GGG | - | chr7_2:1828053-1828072 | None:intergenic | 40.0% | |
| ! | TAACCTAACCTGAGCCTTAT+CGG | - | chr7_2:1828137-1828156 | None:intergenic | 40.0% |
| GATTCAGTGTCCATTTGGAT+TGG | + | chr7_2:1828457-1828476 | Msa1043630:intron | 40.0% | |
| AGAAGATGGAAGCAATCTAG+AGG | + | chr7_2:1828736-1828755 | Msa1043630:intron | 40.0% | |
| GAAGATGGAAGCAATCTAGA+GGG | + | chr7_2:1828737-1828756 | Msa1043630:intron | 40.0% | |
| GCAAAAAAGACCAAAAGGAG+AGG | - | chr7_2:1828893-1828912 | None:intergenic | 40.0% | |
| !! | CTCCTTTTGGTCTTTTTTGC+GGG | + | chr7_2:1828893-1828912 | Msa1043630:intron | 40.0% |
| !! | TCCTTTTGGTCTTTTTTGCG+GGG | + | chr7_2:1828894-1828913 | Msa1043630:intron | 40.0% |
| ! | TCATAGTATTTTGCCTACCC+AGG | - | chr7_2:1828940-1828959 | None:intergenic | 40.0% |
| !!! | GTTTGCTGACTCTTGTTTTC+TGG | + | chr7_2:1829085-1829104 | Msa1043630:intron | 40.0% |
| !! | GACTTGTTGCTTGTGTGAAA+TGG | + | chr7_2:1829112-1829131 | Msa1043630:intron | 40.0% |
| ! | TTGTTGCTTGTGTGAAATGG+CGG | + | chr7_2:1829115-1829134 | Msa1043630:intron | 40.0% |
| CGGTTGGCAAAAACTAAGTT+TGG | - | chr7_2:1829186-1829205 | None:intergenic | 40.0% | |
| !! | GATTTTGGCAAAATCACGGT+TGG | - | chr7_2:1829202-1829221 | None:intergenic | 40.0% |
| TGTCTTCTTGACAAACACGA+CGG | - | chr7_2:1829322-1829341 | None:intergenic | 40.0% | |
| TAATATGGAAGTAGGGAGAC+TGG | + | chr7_2:1829486-1829505 | Msa1043630:intron | 40.0% | |
| TGCACCCTAATGAATGTCAA+CGG | + | chr7_2:1829691-1829710 | Msa1043630:intron | 40.0% | |
| CAGTTCCGTTGACATTCATT+AGG | - | chr7_2:1829699-1829718 | None:intergenic | 40.0% | |
| CGATCCATTATGGATGTTCT+AGG | + | chr7_2:1829734-1829753 | Msa1043630:intron | 40.0% | |
| TACCCCTAGAACATCCATAA+TGG | - | chr7_2:1829741-1829760 | None:intergenic | 40.0% | |
| CTTACTTTCATTCTCTGTGG+AGG | + | chr7_2:1829795-1829814 | Msa1043630:intron | 40.0% | |
| !!! | TCTCTTTCAAGGTTTTGAGG+AGG | + | chr7_2:1829896-1829915 | Msa1043630:intron | 40.0% |
| !!! | CTCTTTCAAGGTTTTGAGGA+GGG | + | chr7_2:1829897-1829916 | Msa1043630:intron | 40.0% |
| ATTGTCTAAACTGTCGTGAG+AGG | + | chr7_2:1829995-1830014 | Msa1043630:intron | 40.0% | |
| CATGCATAGAGAAATCCTGA+AGG | + | chr7_2:1830070-1830089 | Msa1043630:intron | 40.0% | |
| TGCATAGAGAAATCCTGAAG+GGG | + | chr7_2:1830072-1830091 | Msa1043630:intron | 40.0% | |
| TACGCTGTTGTGTTGTCTTA+TGG | + | chr7_2:1830165-1830184 | Msa1043630:intron | 40.0% | |
| TGTTGTCTTATGGTGTGAAG+TGG | + | chr7_2:1830175-1830194 | Msa1043630:intron | 40.0% | |
| TGTAGAATAACTGGCTGAAC+AGG | + | chr7_2:1830235-1830254 | Msa1043630:intron | 40.0% | |
| AAACAGCATAAATAGGGGAG+GGG | - | chr7_2:1830393-1830412 | None:intergenic | 40.0% | |
| GAAACAGCATAAATAGGGGA+GGG | - | chr7_2:1830394-1830413 | None:intergenic | 40.0% | |
| AGAAACAGCATAAATAGGGG+AGG | - | chr7_2:1830395-1830414 | None:intergenic | 40.0% | |
| TAATAGAAAGTTGGACAGGG+TGG | + | chr7_2:1830536-1830555 | Msa1043630:intron | 40.0% | |
| AATAGAAAGTTGGACAGGGT+GGG | + | chr7_2:1830537-1830556 | Msa1043630:intron | 40.0% | |
| ! | GTAGCTGGATTAGATGAATC+AGG | + | chr7_2:1830740-1830759 | Msa1043630:CDS | 40.0% |
| ! | AGCTGGATTAGATGAATCAG+GGG | + | chr7_2:1830742-1830761 | Msa1043630:CDS | 40.0% |
| ATCTTTGATCAGATCTTCCC+GGG | - | chr7_2:1830891-1830910 | None:intergenic | 40.0% | |
| CATCTTTGATCAGATCTTCC+CGG | - | chr7_2:1830892-1830911 | None:intergenic | 40.0% | |
| AAGATGCACTCATTGCAACT+AGG | + | chr7_2:1830906-1830925 | Msa1043630:CDS | 40.0% | |
| AGATGCACTCATTGCAACTA+GGG | + | chr7_2:1830907-1830926 | Msa1043630:CDS | 40.0% | |
| TCCTGATCCAAAATGTGGAA+AGG | - | chr7_2:1830998-1831017 | None:intergenic | 40.0% | |
| CAGTTTCCTGATCCAAAATG+TGG | - | chr7_2:1831003-1831022 | None:intergenic | 40.0% | |
| !!! | TACTTTTGAGATTGTGAGGG+AGG | + | chr7_2:1831039-1831058 | Msa1043630:CDS | 40.0% |
| !! | GTTTCAAGTTGAGTGTGTCA+TGG | + | chr7_2:1831241-1831260 | Msa1043630:three_prime_UTR | 40.0% |
| ACGATACCGACGTAACAACA+TGG | + | chr7_2:1827813-1827832 | Msa1043630:CDS | 45.0% | |
| ACCTTGCTTAACTGCTTCCA+TGG | - | chr7_2:1827873-1827892 | None:intergenic | 45.0% | |
| AAGCAAGGTTCAGCAGCAAT+AGG | + | chr7_2:1827884-1827903 | Msa1043630:CDS | 45.0% | |
| !!! | GAACCACGTGAGTTTTGGAT+CGG | - | chr7_2:1827913-1827932 | None:intergenic | 45.0% |
| CTTAACTGAGTGGCTCACTT+TGG | + | chr7_2:1828371-1828390 | Msa1043630:intron | 45.0% | |
| !! | CCTTTTGGTCTTTTTTGCGG+GGG | + | chr7_2:1828895-1828914 | Msa1043630:intron | 45.0% |
| GTACAGAAGTTGTCCAACCT+GGG | + | chr7_2:1828920-1828939 | Msa1043630:intron | 45.0% | |
| ! | AGTATTTTGCCTACCCAGGT+TGG | - | chr7_2:1828936-1828955 | None:intergenic | 45.0% |
| AGTGTCTCTGTTAGTGACTG+TGG | + | chr7_2:1829047-1829066 | Msa1043630:intron | 45.0% | |
| TAGAGACGGGAGTTAGACTA+CGG | + | chr7_2:1829640-1829659 | Msa1043630:intron | 45.0% | |
| AGGGGTAGACCTCATAGTAA+TGG | + | chr7_2:1829754-1829773 | Msa1043630:intron | 45.0% | |
| GGGGTAGACCTCATAGTAAT+GGG | + | chr7_2:1829755-1829774 | Msa1043630:intron | 45.0% | |
| CTGGAACGTCTTCTCTTTCA+AGG | + | chr7_2:1829885-1829904 | Msa1043630:intron | 45.0% | |
| !! | TAGTGGTCTATCGACTCGAT+AGG | + | chr7_2:1829950-1829969 | Msa1043630:intron | 45.0% |
| AAACTGTCGTGAGAGGCTAT+TGG | + | chr7_2:1830002-1830021 | Msa1043630:intron | 45.0% | |
| GCATAGAGAAATCCTGAAGG+GGG | + | chr7_2:1830073-1830092 | Msa1043630:intron | 45.0% | |
| !! | CAAAAGTATTAGCCCCCTTC+AGG | - | chr7_2:1830088-1830107 | None:intergenic | 45.0% |
| AACAGCATAAATAGGGGAGG+GGG | - | chr7_2:1830392-1830411 | None:intergenic | 45.0% | |
| ACTAGAAGTCCAACGCCATA+AGG | - | chr7_2:1830722-1830741 | None:intergenic | 45.0% | |
| CTCTATTACAACTGCCCAAG+CGG | + | chr7_2:1830770-1830789 | Msa1043630:CDS | 45.0% | |
| AACCACAGCAATGGTGCATA+CGG | - | chr7_2:1830963-1830982 | None:intergenic | 45.0% | |
| ! | TGGTGAGCCTTTCCACATTT+TGG | + | chr7_2:1830988-1831007 | Msa1043630:CDS | 45.0% |
| ! | GCCTTTCCACATTTTGGATC+AGG | + | chr7_2:1830994-1831013 | Msa1043630:CDS | 45.0% |
| AAGTTCACAGTGATCAGCCA+TGG | - | chr7_2:1831326-1831345 | None:intergenic | 45.0% | |
| TATCAACAATCGGGTCCCTT+TGG | + | chr7_2:1831455-1831474 | Msa1043630:three_prime_UTR | 45.0% | |
| CGGTGACCATGTTGTTACGT+CGG | - | chr7_2:1827822-1827841 | None:intergenic | 50.0% | |
| CGACGTAACAACATGGTCAC+CGG | + | chr7_2:1827820-1827839 | Msa1043630:CDS | 50.0% | |
| GCCATGGAAGCAGTTAAGCA+AGG | + | chr7_2:1827869-1827888 | Msa1043630:CDS | 50.0% | |
| TCTCCGATCCAAAACTCACG+TGG | + | chr7_2:1827907-1827926 | Msa1043630:CDS | 50.0% | |
| TATGAATCTCCGCTTCCCGT+TGG | + | chr7_2:1828091-1828110 | Msa1043630:CDS | 50.0% | |
| TGAACGACGAGTCTACCAAC+GGG | - | chr7_2:1828109-1828128 | None:intergenic | 50.0% | |
| CTGAACGACGAGTCTACCAA+CGG | - | chr7_2:1828110-1828129 | None:intergenic | 50.0% | |
| CACTAAGGACCCGTTTGGAT+TGG | - | chr7_2:1828642-1828661 | None:intergenic | 50.0% | |
| ACAGACACTAAGGACCCGTT+TGG | - | chr7_2:1828647-1828666 | None:intergenic | 50.0% | |
| CCCCCGCAAAAAAGACCAAA+AGG | - | chr7_2:1828898-1828917 | None:intergenic | 50.0% | |
| !!! | TTTGGTCTTTTTTGCGGGGG+AGG | + | chr7_2:1828898-1828917 | Msa1043630:intron | 50.0% |
| GGTACAGAAGTTGTCCAACC+TGG | + | chr7_2:1828919-1828938 | Msa1043630:intron | 50.0% | |
| AGAAGTTGTCCAACCTGGGT+AGG | + | chr7_2:1828924-1828943 | Msa1043630:intron | 50.0% | |
| GTCTCTGTTAGTGACTGTGG+TGG | + | chr7_2:1829050-1829069 | Msa1043630:intron | 50.0% | |
| CTTCTTGACAAACACGACGG+AGG | - | chr7_2:1829319-1829338 | None:intergenic | 50.0% | |
| !!! | GGTTTTGAGGAGGGAAACAG+TGG | + | chr7_2:1829906-1829925 | Msa1043630:intron | 50.0% |
| AAAGTTGGACAGGGTGGGTA+TGG | + | chr7_2:1830542-1830561 | Msa1043630:intron | 50.0% | |
| AAGTTGGACAGGGTGGGTAT+GGG | + | chr7_2:1830543-1830562 | Msa1043630:intron | 50.0% | |
| AGGTTTGCACTCAGCGATCA+TGG | + | chr7_2:1830690-1830709 | Msa1043630:intron | 50.0% | |
| !! | CGATCATGGAAGCGTCCTTA+TGG | + | chr7_2:1830704-1830723 | Msa1043630:CDS | 50.0% |
| CGCTTGGGCAGTTGTAATAG+AGG | - | chr7_2:1830772-1830791 | None:intergenic | 50.0% | |
| TTTGATCAGATCTTCCCGGG+AGG | - | chr7_2:1830888-1830907 | None:intergenic | 50.0% | |
| ! | CCTGAGCTTTTCACCTTGCA+AGG | - | chr7_2:1830936-1830955 | None:intergenic | 50.0% |
| CCTTGCAAGGTGAAAAGCTC+AGG | + | chr7_2:1830933-1830952 | Msa1043630:CDS | 50.0% | |
| GTATGCACCATTGCTGTGGT+TGG | + | chr7_2:1830962-1830981 | Msa1043630:CDS | 50.0% | |
| ACCATTGCTGTGGTTGGAGT+TGG | + | chr7_2:1830968-1830987 | Msa1043630:CDS | 50.0% | |
| ACCAACTCCAACCACAGCAA+TGG | - | chr7_2:1830972-1830991 | None:intergenic | 50.0% | |
| GCTTCTGGTGCAGATCAAAG+TGG | + | chr7_2:1831121-1831140 | Msa1043630:CDS | 50.0% | |
| !! | CAGATCAAAGTGGTGCTGGT+GGG | + | chr7_2:1831131-1831150 | Msa1043630:CDS | 50.0% |
| !! | AGATCAAAGTGGTGCTGGTG+GGG | + | chr7_2:1831132-1831151 | Msa1043630:CDS | 50.0% |
| TGACCAAGGTGGTTCTCCAA+TGG | + | chr7_2:1831156-1831175 | Msa1043630:CDS | 50.0% | |
| TCTCCATTGGAGAACCACCT+TGG | - | chr7_2:1831162-1831181 | None:intergenic | 50.0% | |
| CGTAACAACATGGTCACCGG+CGG | + | chr7_2:1827823-1827842 | Msa1043630:CDS | 55.0% | |
| GTAACAACATGGTCACCGGC+GGG | + | chr7_2:1827824-1827843 | Msa1043630:CDS | 55.0% | |
| CTTCCAGGTGGAATACGCCA+TGG | + | chr7_2:1827853-1827872 | Msa1043630:CDS | 55.0% | |
| CTTCCATGGCGTATTCCACC+TGG | - | chr7_2:1827859-1827878 | None:intergenic | 55.0% | |
| ! | CGCGAGAACCACGTGAGTTT+TGG | - | chr7_2:1827918-1827937 | None:intergenic | 55.0% |
| ACGGGAAAGAACACGGCCAT+CGG | - | chr7_2:1828035-1828054 | None:intergenic | 55.0% | |
| ACGAGTCTACCAACGGGAAG+CGG | - | chr7_2:1828103-1828122 | None:intergenic | 55.0% | |
| TCGCCGATAAGGCTCAGGTT+AGG | + | chr7_2:1828131-1828150 | Msa1043630:intron | 55.0% | |
| GAAGTAGGGAGACTGGTGTG+CGG | + | chr7_2:1829493-1829512 | Msa1043630:intron | 55.0% | |
| AGTTGGACAGGGTGGGTATG+GGG | + | chr7_2:1830544-1830563 | Msa1043630:intron | 55.0% | |
| !! | TGGAAGCGTCCTTATGGCGT+TGG | + | chr7_2:1830710-1830729 | Msa1043630:CDS | 55.0% |
| ! | GGCGTTGGACTTCTAGTAGC+TGG | + | chr7_2:1830725-1830744 | Msa1043630:CDS | 55.0% |
| ACAACTTCACAGCCTCCTCC+CGG | + | chr7_2:1830870-1830889 | Msa1043630:CDS | 55.0% | |
| GCAACTAGGGAGTCCTTGCA+AGG | + | chr7_2:1830920-1830939 | Msa1043630:CDS | 55.0% | |
| CTCCGTATGCACCATTGCTG+TGG | + | chr7_2:1830958-1830977 | Msa1043630:CDS | 55.0% | |
| TGCACCAGAAGCCTGATCTG+TGG | - | chr7_2:1831113-1831132 | None:intergenic | 55.0% | |
| GGTGCAGATCAAAGTGGTGC+TGG | + | chr7_2:1831127-1831146 | Msa1043630:CDS | 55.0% | |
| ! | GCAGATCAAAGTGGTGCTGG+TGG | + | chr7_2:1831130-1831149 | Msa1043630:CDS | 55.0% |
| ACCTGGAAGAGTCTTCCCGC+CGG | - | chr7_2:1827842-1827861 | None:intergenic | 60.0% | |
| CATATCGGCGTTGCCATCGC+CGG | + | chr7_2:1828001-1828020 | Msa1043630:CDS | 60.0% | |
| GGAAAGAACACGGCCATCGG+CGG | - | chr7_2:1828032-1828051 | None:intergenic | 60.0% | |
| CGTCGTTCAGCTCGCCGATA+AGG | + | chr7_2:1828120-1828139 | Msa1043630:CDS | 60.0% | |
| TCAGCTCGCCGATAAGGCTC+AGG | + | chr7_2:1828126-1828145 | Msa1043630:CDS | 60.0% | |
| GTTGGACAGGGTGGGTATGG+GGG | + | chr7_2:1830545-1830564 | Msa1043630:intron | 60.0% | |
| TTGGACAGGGTGGGTATGGG+GGG | + | chr7_2:1830546-1830565 | Msa1043630:intron | 60.0% | |
| CAACTTCACAGCCTCCTCCC+GGG | + | chr7_2:1830871-1830890 | Msa1043630:CDS | 60.0% | |
| GATCAGATCTTCCCGGGAGG+AGG | - | chr7_2:1830885-1830904 | None:intergenic | 60.0% | |
| AGCTGCACCTGCTGAACCTG+AGG | + | chr7_2:1831066-1831085 | Msa1043630:CDS | 60.0% | |
| GCAGGATGCTGCCACAGATC+AGG | + | chr7_2:1831099-1831118 | Msa1043630:CDS | 60.0% | |
| GCTGCCACAGATCAGGCTTC+TGG | + | chr7_2:1831106-1831125 | Msa1043630:CDS | 60.0% | |
| ACCGGCGGGAAGACTCTTCC+AGG | + | chr7_2:1827838-1827857 | Msa1043630:CDS | 65.0% | |
| GGCGGGAAGACTCTTCCAGG+TGG | + | chr7_2:1827841-1827860 | Msa1043630:CDS | 65.0% | |
| TGGACAGGGTGGGTATGGGG+GGG | + | chr7_2:1830547-1830566 | Msa1043630:intron | 65.0% | |
| GCTGCAGCCTCAGGTTCAGC+AGG | - | chr7_2:1831076-1831095 | None:intergenic | 65.0% | |
| ACCTGAGGCTGCAGCTGAGC+AGG | + | chr7_2:1831081-1831100 | Msa1043630:CDS | 65.0% | |
| TCCTGCTCAGCTGCAGCCTC+AGG | - | chr7_2:1831085-1831104 | None:intergenic | 65.0% | |
| ATCGGCGGTGAGACCGGCGA+TGG | - | chr7_2:1828017-1828036 | None:intergenic | 70.0% | |
| ATCGCCGGTCTCACCGCCGA+TGG | + | chr7_2:1828016-1828035 | Msa1043630:CDS | 70.0% | |
| ACGGCCATCGGCGGTGAGAC+CGG | - | chr7_2:1828023-1828042 | None:intergenic | 70.0% | |
| !! | GGTGCTGGTGGGGCTGACCA+AGG | + | chr7_2:1831142-1831161 | Msa1043630:CDS | 70.0% |
| GCTGGTGGGGCTGACCAAGG+TGG | + | chr7_2:1831145-1831164 | Msa1043630:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 1827684 | 1831508 | 1827684 | ID=Msa1043630;Name=Msa1043630 |
| chr7_2 | mRNA | 1827684 | 1831508 | 1827684 | ID=Msa1043630-mRNA-1;Parent=Msa1043630;Name=Msa1043630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=113|1|1|1|1|1|2|322|281 |
| chr7_2 | exon | 1827684 | 1828147 | 1827684 | ID=Msa1043630-mRNA-1:exon:347;Parent=Msa1043630-mRNA-1 |
| chr7_2 | exon | 1830692 | 1831508 | 1830692 | ID=Msa1043630-mRNA-1:exon:348;Parent=Msa1043630-mRNA-1 |
| chr7_2 | five_prime_UTR | 1827684 | 1827796 | 1827684 | ID=Msa1043630-mRNA-1:five_prime_utr;Parent=Msa1043630-mRNA-1 |
| chr7_2 | CDS | 1827797 | 1828147 | 1827797 | ID=Msa1043630-mRNA-1:cds;Parent=Msa1043630-mRNA-1 |
| chr7_2 | CDS | 1830692 | 1831186 | 1830692 | ID=Msa1043630-mRNA-1:cds;Parent=Msa1043630-mRNA-1 |
| chr7_2 | three_prime_UTR | 1831187 | 1831508 | 1831187 | ID=Msa1043630-mRNA-1:three_prime_utr;Parent=Msa1043630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
