AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1145240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145240 MtrunA17_Chr2g0282661 98.684 152 2 0 1 152 1 152 2.31e-109 307
Msa1145240 MtrunA17_Chr2g0324821 66.667 144 40 2 12 152 2 140 3.33e-65 195
Msa1145240 MtrunA17_Chr5g0413571 65.217 138 42 2 13 150 4 135 3.93e-60 182
Msa1145240 MtrunA17_Chr8g0365411 54.348 138 24 1 14 151 5 103 3.06e-46 146
Msa1145240 MtrunA17_Chr6g0476691 60.000 105 35 1 47 151 2 99 2.23e-38 126
Msa1145240 MtrunA17_Chr5g0438061 38.462 130 65 2 20 148 103 218 1.42e-20 84.0
Msa1145240 MtrunA17_Chr5g0438041 39.259 135 63 4 20 149 5 125 1.78e-20 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1145240 AT2G33845.1 68.382 136 38 1 17 152 52 182 1.95e-64 195
Msa1145240 AT1G23750.1 63.121 141 46 1 11 151 3 137 6.09e-63 189
Msa1145240 AT4G28440.1 65.152 132 46 0 17 148 17 148 2.56e-59 181
Msa1145240 AT1G10590.2 61.940 134 46 3 16 148 7 136 2.22e-56 173
Msa1145240 AT1G10590.1 61.940 134 46 3 16 148 7 136 2.22e-56 173
Msa1145240 AT1G10590.3 61.940 134 46 3 16 148 21 150 3.61e-56 173
Msa1145240 AT1G03810.1 60.902 133 49 1 17 149 14 143 3.20e-54 168
Msa1145240 AT1G23750.2 68.571 105 27 1 47 151 2 100 1.34e-47 149

Find 37 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGATTGACATGTTTA+AGG 0.167888 7_4:-21851378 Msa1145240:CDS
AGACAATGGACTATAAAATT+TGG 0.261459 7_4:+21850989 None:intergenic
TCCGAAACTGTTCTGCAAAA+AGG 0.301507 7_4:-21852651 Msa1145240:CDS
ATGAAGTCAAGCATGTTAAA+AGG 0.324760 7_4:+21851130 None:intergenic
AAAGTGTGTCCGTTTGTTCC+TGG 0.370124 7_4:+21852693 None:intergenic
GCAAAGATTGACATGTTTAA+GGG 0.371017 7_4:-21851377 Msa1145240:CDS
ATCTCTCATTGAATATGAAT+TGG 0.375517 7_4:-21851270 Msa1145240:CDS
ATTCATATTCAATGAGAGAT+AGG 0.377306 7_4:+21851273 None:intergenic
TGAGGCTGGCCGTTGACAAA+TGG 0.402663 7_4:-21851349 Msa1145240:CDS
GAGGCTGGCCGTTGACAAAT+GGG 0.404101 7_4:-21851348 Msa1145240:CDS
CTGATATGGCAAAACTTAAC+TGG 0.406337 7_4:-21851187 Msa1145240:three_prime_UTR
TGCAGAGTTCGTTGTTAAAG+AGG 0.437457 7_4:-21851303 Msa1145240:CDS
AATGTTGTTTCACATGAAGA+TGG 0.450601 7_4:-21852768 Msa1145240:CDS
AAAACCCACTTTCACAAAAG+TGG 0.453220 7_4:-21852727 Msa1145240:CDS
CATTGCAGTTGAGCTTATGA+AGG 0.477921 7_4:-21851426 Msa1145240:intron
AGAGTAATTCATAGTTAAAG+AGG 0.491467 7_4:-21851234 Msa1145240:exon
TCTTTAACAACGAACTCTGC+AGG 0.492103 7_4:+21851305 None:intergenic
GCAGTTGAGCTTATGAAGGC+TGG 0.493996 7_4:-21851422 Msa1145240:intron
TGTCTCATCGGTGATGAAAC+TGG 0.501588 7_4:-21852567 Msa1145240:CDS
TATCAGCACAAACAAAAGAT+AGG 0.506308 7_4:+21851204 None:intergenic
CAGATGAAACCAGGAACAAA+CGG 0.508711 7_4:-21852702 Msa1145240:CDS
CGGACACACTTTGATTGCTA+AGG 0.513860 7_4:-21852682 Msa1145240:CDS
TGCTTATAATTGCAAGACAA+TGG 0.553952 7_4:+21850975 None:intergenic
CTTATCTCTGAGTGTCTCAT+CGG 0.563970 7_4:-21852579 Msa1145240:CDS
TTCACCGCTCGCAATGAACA+AGG 0.567422 7_4:-21852534 Msa1145240:intron
ATTGCGAGCGGTGAAAATGA+TGG 0.574482 7_4:+21852542 None:intergenic
GTTTAAGGGATCAATGAGGC+TGG 0.582292 7_4:-21851363 Msa1145240:CDS
GGCTGGCCGTTGACAAATGG+GGG 0.597410 7_4:-21851346 Msa1145240:CDS
AGACACTCAGAGATAAGAGT+AGG 0.601286 7_4:+21852585 None:intergenic
CTTTAACAACGAACTCTGCA+GGG 0.601895 7_4:+21851306 None:intergenic
GAGTAATTCATAGTTAAAGA+GGG 0.610715 7_4:-21851233 Msa1145240:exon
ATACCACGAGAAGATGAAGA+AGG 0.617287 7_4:+21852615 None:intergenic
AGAACCTTGTTCATTGCGAG+CGG 0.622173 7_4:+21852530 None:intergenic
AGACCTTCTTCATCTTCTCG+TGG 0.632890 7_4:-21852618 Msa1145240:CDS
AGGCTGGCCGTTGACAAATG+GGG 0.640279 7_4:-21851347 Msa1145240:CDS
AAAGTGGATCAGATGAAACC+AGG 0.663122 7_4:-21852711 Msa1145240:CDS
ACATGTTTAAGGGATCAATG+AGG 0.703797 7_4:-21851367 Msa1145240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTCTTCTTCATT+TGG - chr7_4:21851493-21851512 Msa1145240:intron 15.0%
!!! TTTTTTTTTCTTCTTCATTT+GGG - chr7_4:21851494-21851513 Msa1145240:intron 15.0%
!!! TAAGATATGTTTTTATTGAT+TGG - chr7_4:21852402-21852421 Msa1145240:intron 15.0%
!!! TTTTTTTTTTCTTCTTCATT+TGG - chr7_4:21851493-21851512 Msa1145240:intron 15.0%
!!! TTTTTTTTTCTTCTTCATTT+GGG - chr7_4:21851494-21851513 Msa1145240:intron 15.0%
!!! TAAGATATGTTTTTATTGAT+TGG - chr7_4:21852402-21852421 Msa1145240:intron 15.0%
!! AAAACTGAAAAACAAAACAA+TGG - chr7_4:21851112-21851131 Msa1145240:three_prime_UTR 20.0%
!!! CAGTTATCATTTTTAAGAAT+GGG + chr7_4:21851437-21851456 None:intergenic 20.0%
!!! ACAGTTATCATTTTTAAGAA+TGG + chr7_4:21851438-21851457 None:intergenic 20.0%
!!! TTTTTTTTCTTCTTCATTTG+GGG - chr7_4:21851495-21851514 Msa1145240:intron 20.0%
!!! ATGAACACTAATTTAGATTT+TGG + chr7_4:21851571-21851590 None:intergenic 20.0%
!! AATCTAAATTAGTGTTCATA+AGG - chr7_4:21851572-21851591 Msa1145240:intron 20.0%
!! ATAAAAATGCTGATAAAAAG+GGG + chr7_4:21851695-21851714 None:intergenic 20.0%
!! CATAAAAATGCTGATAAAAA+GGG + chr7_4:21851696-21851715 None:intergenic 20.0%
!!! ATTTTATTAAGAGTTTAGAG+AGG - chr7_4:21851801-21851820 Msa1145240:intron 20.0%
!! TTATGAAACTTATGATTCAT+TGG - chr7_4:21851850-21851869 Msa1145240:intron 20.0%
!!! GTTTTTATTGATTGGATATT+AGG - chr7_4:21852410-21852429 Msa1145240:intron 20.0%
!! AAAACTGAAAAACAAAACAA+TGG - chr7_4:21851112-21851131 Msa1145240:three_prime_UTR 20.0%
!!! CAGTTATCATTTTTAAGAAT+GGG + chr7_4:21851437-21851456 None:intergenic 20.0%
!!! ACAGTTATCATTTTTAAGAA+TGG + chr7_4:21851438-21851457 None:intergenic 20.0%
!!! TTTTTTTTCTTCTTCATTTG+GGG - chr7_4:21851495-21851514 Msa1145240:intron 20.0%
!!! ATGAACACTAATTTAGATTT+TGG + chr7_4:21851571-21851590 None:intergenic 20.0%
!! AATCTAAATTAGTGTTCATA+AGG - chr7_4:21851572-21851591 Msa1145240:intron 20.0%
!! ATAAAAATGCTGATAAAAAG+GGG + chr7_4:21851695-21851714 None:intergenic 20.0%
!! CATAAAAATGCTGATAAAAA+GGG + chr7_4:21851696-21851715 None:intergenic 20.0%
!!! ATTTTATTAAGAGTTTAGAG+AGG - chr7_4:21851801-21851820 Msa1145240:intron 20.0%
!! TTATGAAACTTATGATTCAT+TGG - chr7_4:21851850-21851869 Msa1145240:intron 20.0%
!!! GTTTTTATTGATTGGATATT+AGG - chr7_4:21852410-21852429 Msa1145240:intron 20.0%
!!! GATCTACATTTTTTGAGATT+AGG - chr7_4:21851530-21851549 Msa1145240:intron 25.0%
! GCATAAAAATGCTGATAAAA+AGG + chr7_4:21851697-21851716 None:intergenic 25.0%
!!! ATTTTTAGCTCTTTATGTAC+TGG - chr7_4:21851746-21851765 Msa1145240:intron 25.0%
! CAATATAGAAAGAAATAGTC+AGG + chr7_4:21851781-21851800 None:intergenic 25.0%
!! AAACTTATGATTCATTGGTT+GGG - chr7_4:21851855-21851874 Msa1145240:intron 25.0%
! CTTATTTCCATAACATCTAT+AGG - chr7_4:21852105-21852124 Msa1145240:intron 25.0%
! TCTACAACATGGTAATATAA+AGG + chr7_4:21852173-21852192 None:intergenic 25.0%
!!! AATAAGCTATTTCTACAACA+TGG + chr7_4:21852184-21852203 None:intergenic 25.0%
! TTATAGTATAACCATGTAAG+TGG + chr7_4:21852217-21852236 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAGT+AGG - chr7_4:21852244-21852263 Msa1145240:intron 25.0%
!!! TTGTAGTTTATTTTCTTCGT+GGG - chr7_4:21852268-21852287 Msa1145240:intron 25.0%
!! ACATCAATAGTTTCTTTTAG+TGG - chr7_4:21852371-21852390 Msa1145240:intron 25.0%
! TATTAGGACTAATCAGTATA+AGG - chr7_4:21852426-21852445 Msa1145240:intron 25.0%
! ATTCATATTCAATGAGAGAT+AGG + chr7_4:21852641-21852660 None:intergenic 25.0%
! ATCTCTCATTGAATATGAAT+TGG - chr7_4:21852641-21852660 Msa1145240:CDS 25.0%
! AGAGTAATTCATAGTTAAAG+AGG - chr7_4:21852677-21852696 Msa1145240:CDS 25.0%
! GAGTAATTCATAGTTAAAGA+GGG - chr7_4:21852678-21852697 Msa1145240:CDS 25.0%
!! CATTTTCACTTTAATTAGAC+TGG - chr7_4:21852753-21852772 Msa1145240:CDS 25.0%
!! ACTATCATATTTTTCTCAAG+TGG + chr7_4:21852873-21852892 None:intergenic 25.0%
!!! AGACAATGGACTATAAAATT+TGG + chr7_4:21852925-21852944 None:intergenic 25.0%
!!! GATCTACATTTTTTGAGATT+AGG - chr7_4:21851530-21851549 Msa1145240:intron 25.0%
! GCATAAAAATGCTGATAAAA+AGG + chr7_4:21851697-21851716 None:intergenic 25.0%
!!! ATTTTTAGCTCTTTATGTAC+TGG - chr7_4:21851746-21851765 Msa1145240:intron 25.0%
! CAATATAGAAAGAAATAGTC+AGG + chr7_4:21851781-21851800 None:intergenic 25.0%
!! AAACTTATGATTCATTGGTT+GGG - chr7_4:21851855-21851874 Msa1145240:intron 25.0%
! CTTATTTCCATAACATCTAT+AGG - chr7_4:21852105-21852124 Msa1145240:intron 25.0%
! TCTACAACATGGTAATATAA+AGG + chr7_4:21852173-21852192 None:intergenic 25.0%
!!! AATAAGCTATTTCTACAACA+TGG + chr7_4:21852184-21852203 None:intergenic 25.0%
! TTATAGTATAACCATGTAAG+TGG + chr7_4:21852217-21852236 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAGT+AGG - chr7_4:21852244-21852263 Msa1145240:intron 25.0%
!!! TTGTAGTTTATTTTCTTCGT+GGG - chr7_4:21852268-21852287 Msa1145240:intron 25.0%
!! ACATCAATAGTTTCTTTTAG+TGG - chr7_4:21852371-21852390 Msa1145240:intron 25.0%
! TATTAGGACTAATCAGTATA+AGG - chr7_4:21852426-21852445 Msa1145240:intron 25.0%
! ATTCATATTCAATGAGAGAT+AGG + chr7_4:21852641-21852660 None:intergenic 25.0%
! ATCTCTCATTGAATATGAAT+TGG - chr7_4:21852641-21852660 Msa1145240:CDS 25.0%
! AGAGTAATTCATAGTTAAAG+AGG - chr7_4:21852677-21852696 Msa1145240:CDS 25.0%
! GAGTAATTCATAGTTAAAGA+GGG - chr7_4:21852678-21852697 Msa1145240:CDS 25.0%
!! CATTTTCACTTTAATTAGAC+TGG - chr7_4:21852753-21852772 Msa1145240:CDS 25.0%
!! ACTATCATATTTTTCTCAAG+TGG + chr7_4:21852873-21852892 None:intergenic 25.0%
!!! AGACAATGGACTATAAAATT+TGG + chr7_4:21852925-21852944 None:intergenic 25.0%
!! AATGTTGTTTCACATGAAGA+TGG - chr7_4:21851143-21851162 Msa1145240:three_prime_UTR 30.0%
AAAAATGATAACTGTTCTCG+TGG - chr7_4:21851443-21851462 Msa1145240:intron 30.0%
AAAATGATAACTGTTCTCGT+GGG - chr7_4:21851444-21851463 Msa1145240:intron 30.0%
GGGGATCTAAAAATAAACAT+TGG + chr7_4:21851676-21851695 None:intergenic 30.0%
TATTAAGAGTTTAGAGAGGA+AGG - chr7_4:21851805-21851824 Msa1145240:intron 30.0%
GAAACTTATGATTCATTGGT+TGG - chr7_4:21851854-21851873 Msa1145240:intron 30.0%
TAAACACTTGTGACACTATT+TGG - chr7_4:21852035-21852054 Msa1145240:intron 30.0%
AAACACTTGTGACACTATTT+GGG - chr7_4:21852036-21852055 Msa1145240:intron 30.0%
AAGCTATCCTATAGATGTTA+TGG + chr7_4:21852115-21852134 None:intergenic 30.0%
AAATAAACTACAAGCCTACT+TGG + chr7_4:21852261-21852280 None:intergenic 30.0%
!! CTTGTAGTTTATTTTCTTCG+TGG - chr7_4:21852267-21852286 Msa1145240:intron 30.0%
!! TGTAGTTTATTTTCTTCGTG+GGG - chr7_4:21852269-21852288 Msa1145240:intron 30.0%
AAGAAACTATTGATGTTGCA+GGG + chr7_4:21852367-21852386 None:intergenic 30.0%
AAAGAAACTATTGATGTTGC+AGG + chr7_4:21852368-21852387 None:intergenic 30.0%
TGCAAAGATTGACATGTTTA+AGG - chr7_4:21852533-21852552 Msa1145240:intron 30.0%
GCAAAGATTGACATGTTTAA+GGG - chr7_4:21852534-21852553 Msa1145240:intron 30.0%
TATCAGCACAAACAAAAGAT+AGG + chr7_4:21852710-21852729 None:intergenic 30.0%
!! ATCTTTTGTTTGTGCTGATA+TGG - chr7_4:21852710-21852729 Msa1145240:CDS 30.0%
ATGAAGTCAAGCATGTTAAA+AGG + chr7_4:21852784-21852803 None:intergenic 30.0%
! AACATGCTTGACTTCATTTT+AGG - chr7_4:21852787-21852806 Msa1145240:exon 30.0%
!! AATGTTGTTTCACATGAAGA+TGG - chr7_4:21851143-21851162 Msa1145240:three_prime_UTR 30.0%
AAAAATGATAACTGTTCTCG+TGG - chr7_4:21851443-21851462 Msa1145240:intron 30.0%
AAAATGATAACTGTTCTCGT+GGG - chr7_4:21851444-21851463 Msa1145240:intron 30.0%
GGGGATCTAAAAATAAACAT+TGG + chr7_4:21851676-21851695 None:intergenic 30.0%
TATTAAGAGTTTAGAGAGGA+AGG - chr7_4:21851805-21851824 Msa1145240:intron 30.0%
GAAACTTATGATTCATTGGT+TGG - chr7_4:21851854-21851873 Msa1145240:intron 30.0%
TAAACACTTGTGACACTATT+TGG - chr7_4:21852035-21852054 Msa1145240:intron 30.0%
AAACACTTGTGACACTATTT+GGG - chr7_4:21852036-21852055 Msa1145240:intron 30.0%
AAGCTATCCTATAGATGTTA+TGG + chr7_4:21852115-21852134 None:intergenic 30.0%
AAATAAACTACAAGCCTACT+TGG + chr7_4:21852261-21852280 None:intergenic 30.0%
!! CTTGTAGTTTATTTTCTTCG+TGG - chr7_4:21852267-21852286 Msa1145240:intron 30.0%
!! TGTAGTTTATTTTCTTCGTG+GGG - chr7_4:21852269-21852288 Msa1145240:intron 30.0%
AAGAAACTATTGATGTTGCA+GGG + chr7_4:21852367-21852386 None:intergenic 30.0%
AAAGAAACTATTGATGTTGC+AGG + chr7_4:21852368-21852387 None:intergenic 30.0%
TGCAAAGATTGACATGTTTA+AGG - chr7_4:21852533-21852552 Msa1145240:intron 30.0%
GCAAAGATTGACATGTTTAA+GGG - chr7_4:21852534-21852553 Msa1145240:intron 30.0%
TATCAGCACAAACAAAAGAT+AGG + chr7_4:21852710-21852729 None:intergenic 30.0%
!! ATCTTTTGTTTGTGCTGATA+TGG - chr7_4:21852710-21852729 Msa1145240:CDS 30.0%
ATGAAGTCAAGCATGTTAAA+AGG + chr7_4:21852784-21852803 None:intergenic 30.0%
! AACATGCTTGACTTCATTTT+AGG - chr7_4:21852787-21852806 Msa1145240:exon 30.0%
AAAACCCACTTTCACAAAAG+TGG - chr7_4:21851184-21851203 Msa1145240:three_prime_UTR 35.0%
!! TGATCCACTTTTGTGAAAGT+GGG + chr7_4:21851191-21851210 None:intergenic 35.0%
! ACCTTTTTGCAGAACAGTTT+CGG + chr7_4:21851264-21851283 None:intergenic 35.0%
GTGTTCATAAGGTTCTTAGT+TGG - chr7_4:21851583-21851602 Msa1145240:intron 35.0%
AGTTTAGAGAGGAAGGAAAA+TGG - chr7_4:21851914-21851933 Msa1145240:intron 35.0%
GTTTAGAGAGGAAGGAAAAT+GGG - chr7_4:21851915-21851934 Msa1145240:intron 35.0%
TCATTCTCAATCATTCCTTC+AGG - chr7_4:21851951-21851970 Msa1145240:intron 35.0%
CATTCTCAATCATTCCTTCA+GGG - chr7_4:21851952-21851971 Msa1145240:intron 35.0%
AGCAAATCCTTGAGTAAGTA+GGG - chr7_4:21851975-21851994 Msa1145240:intron 35.0%
TATGCAAATGCTTGTGCATA+AGG + chr7_4:21852303-21852322 None:intergenic 35.0%
CACAAGCATTTGCATATAAG+TGG - chr7_4:21852307-21852326 Msa1145240:intron 35.0%
ACATGTTTAAGGGATCAATG+AGG - chr7_4:21852544-21852563 Msa1145240:CDS 35.0%
CTGATATGGCAAAACTTAAC+TGG - chr7_4:21852724-21852743 Msa1145240:CDS 35.0%
AAAACCCACTTTCACAAAAG+TGG - chr7_4:21851184-21851203 Msa1145240:three_prime_UTR 35.0%
!! TGATCCACTTTTGTGAAAGT+GGG + chr7_4:21851191-21851210 None:intergenic 35.0%
! ACCTTTTTGCAGAACAGTTT+CGG + chr7_4:21851264-21851283 None:intergenic 35.0%
GTGTTCATAAGGTTCTTAGT+TGG - chr7_4:21851583-21851602 Msa1145240:intron 35.0%
AGTTTAGAGAGGAAGGAAAA+TGG - chr7_4:21851914-21851933 Msa1145240:intron 35.0%
GTTTAGAGAGGAAGGAAAAT+GGG - chr7_4:21851915-21851934 Msa1145240:intron 35.0%
TCATTCTCAATCATTCCTTC+AGG - chr7_4:21851951-21851970 Msa1145240:intron 35.0%
CATTCTCAATCATTCCTTCA+GGG - chr7_4:21851952-21851971 Msa1145240:intron 35.0%
AGCAAATCCTTGAGTAAGTA+GGG - chr7_4:21851975-21851994 Msa1145240:intron 35.0%
TATGCAAATGCTTGTGCATA+AGG + chr7_4:21852303-21852322 None:intergenic 35.0%
CACAAGCATTTGCATATAAG+TGG - chr7_4:21852307-21852326 Msa1145240:intron 35.0%
ACATGTTTAAGGGATCAATG+AGG - chr7_4:21852544-21852563 Msa1145240:CDS 35.0%
CTGATATGGCAAAACTTAAC+TGG - chr7_4:21852724-21852743 Msa1145240:CDS 35.0%
!! AAAGTGGGTTTTCTCTTTGC+GGG + chr7_4:21851176-21851195 None:intergenic 40.0%
!! GAAAGTGGGTTTTCTCTTTG+CGG + chr7_4:21851177-21851196 None:intergenic 40.0%
!! CTGATCCACTTTTGTGAAAG+TGG + chr7_4:21851192-21851211 None:intergenic 40.0%
AAAGTGGATCAGATGAAACC+AGG - chr7_4:21851200-21851219 Msa1145240:three_prime_UTR 40.0%
CAGATGAAACCAGGAACAAA+CGG - chr7_4:21851209-21851228 Msa1145240:three_prime_UTR 40.0%
! TTTTTGCAGAACAGTTTCGG+AGG + chr7_4:21851261-21851280 None:intergenic 40.0%
TCCGAAACTGTTCTGCAAAA+AGG - chr7_4:21851260-21851279 Msa1145240:CDS 40.0%
GAAACTGTTCTGCAAAAAGG+TGG - chr7_4:21851263-21851282 Msa1145240:CDS 40.0%
ATACCACGAGAAGATGAAGA+AGG + chr7_4:21851299-21851318 None:intergenic 40.0%
AGACACTCAGAGATAAGAGT+AGG + chr7_4:21851329-21851348 None:intergenic 40.0%
CTTATCTCTGAGTGTCTCAT+CGG - chr7_4:21851332-21851351 Msa1145240:CDS 40.0%
! GGTGATTGTTACACCCATTT+TGG - chr7_4:21851604-21851623 Msa1145240:intron 40.0%
CCGAGTAACAACACCAAAAT+GGG + chr7_4:21851620-21851639 None:intergenic 40.0%
!!! CCCATTTTGGTGTTGTTACT+CGG - chr7_4:21851617-21851636 Msa1145240:intron 40.0%
TCCGAGTAACAACACCAAAA+TGG + chr7_4:21851621-21851640 None:intergenic 40.0%
! TGATTCATTGGTTGGGCTTT+AGG - chr7_4:21851862-21851881 Msa1145240:intron 40.0%
! GATTCATTGGTTGGGCTTTA+GGG - chr7_4:21851863-21851882 Msa1145240:intron 40.0%
! ATTCATTGGTTGGGCTTTAG+GGG - chr7_4:21851864-21851883 Msa1145240:intron 40.0%
!! TGGGCTTTAGGGGATAAAAA+TGG - chr7_4:21851874-21851893 Msa1145240:intron 40.0%
CTCTCTAAACTCATGAGACA+TGG + chr7_4:21851905-21851924 None:intergenic 40.0%
CATGTCTCATGAGTTTAGAG+AGG - chr7_4:21851903-21851922 Msa1145240:intron 40.0%
TCTCATGAGTTTAGAGAGGA+AGG - chr7_4:21851907-21851926 Msa1145240:intron 40.0%
GAGCAAATCCTTGAGTAAGT+AGG - chr7_4:21851974-21851993 Msa1145240:intron 40.0%
CAAACAACCCTACTTACTCA+AGG + chr7_4:21851985-21852004 None:intergenic 40.0%
CTTGAGTAAGTAGGGTTGTT+TGG - chr7_4:21851983-21852002 Msa1145240:intron 40.0%
GTAAGTAGGGTTGTTTGGAT+TGG - chr7_4:21851988-21852007 Msa1145240:intron 40.0%
CATTGCAGTTGAGCTTATGA+AGG - chr7_4:21852485-21852504 Msa1145240:intron 40.0%
CTTTAACAACGAACTCTGCA+GGG + chr7_4:21852608-21852627 None:intergenic 40.0%
TCTTTAACAACGAACTCTGC+AGG + chr7_4:21852609-21852628 None:intergenic 40.0%
TGCAGAGTTCGTTGTTAAAG+AGG - chr7_4:21852608-21852627 Msa1145240:CDS 40.0%
!! AAAGTGGGTTTTCTCTTTGC+GGG + chr7_4:21851176-21851195 None:intergenic 40.0%
!! GAAAGTGGGTTTTCTCTTTG+CGG + chr7_4:21851177-21851196 None:intergenic 40.0%
!! CTGATCCACTTTTGTGAAAG+TGG + chr7_4:21851192-21851211 None:intergenic 40.0%
AAAGTGGATCAGATGAAACC+AGG - chr7_4:21851200-21851219 Msa1145240:three_prime_UTR 40.0%
CAGATGAAACCAGGAACAAA+CGG - chr7_4:21851209-21851228 Msa1145240:three_prime_UTR 40.0%
! TTTTTGCAGAACAGTTTCGG+AGG + chr7_4:21851261-21851280 None:intergenic 40.0%
TCCGAAACTGTTCTGCAAAA+AGG - chr7_4:21851260-21851279 Msa1145240:CDS 40.0%
GAAACTGTTCTGCAAAAAGG+TGG - chr7_4:21851263-21851282 Msa1145240:CDS 40.0%
ATACCACGAGAAGATGAAGA+AGG + chr7_4:21851299-21851318 None:intergenic 40.0%
AGACACTCAGAGATAAGAGT+AGG + chr7_4:21851329-21851348 None:intergenic 40.0%
CTTATCTCTGAGTGTCTCAT+CGG - chr7_4:21851332-21851351 Msa1145240:CDS 40.0%
! GGTGATTGTTACACCCATTT+TGG - chr7_4:21851604-21851623 Msa1145240:intron 40.0%
CCGAGTAACAACACCAAAAT+GGG + chr7_4:21851620-21851639 None:intergenic 40.0%
!!! CCCATTTTGGTGTTGTTACT+CGG - chr7_4:21851617-21851636 Msa1145240:intron 40.0%
TCCGAGTAACAACACCAAAA+TGG + chr7_4:21851621-21851640 None:intergenic 40.0%
! TGATTCATTGGTTGGGCTTT+AGG - chr7_4:21851862-21851881 Msa1145240:intron 40.0%
! GATTCATTGGTTGGGCTTTA+GGG - chr7_4:21851863-21851882 Msa1145240:intron 40.0%
! ATTCATTGGTTGGGCTTTAG+GGG - chr7_4:21851864-21851883 Msa1145240:intron 40.0%
!! TGGGCTTTAGGGGATAAAAA+TGG - chr7_4:21851874-21851893 Msa1145240:intron 40.0%
CTCTCTAAACTCATGAGACA+TGG + chr7_4:21851905-21851924 None:intergenic 40.0%
CATGTCTCATGAGTTTAGAG+AGG - chr7_4:21851903-21851922 Msa1145240:intron 40.0%
TCTCATGAGTTTAGAGAGGA+AGG - chr7_4:21851907-21851926 Msa1145240:intron 40.0%
GAGCAAATCCTTGAGTAAGT+AGG - chr7_4:21851974-21851993 Msa1145240:intron 40.0%
CAAACAACCCTACTTACTCA+AGG + chr7_4:21851985-21852004 None:intergenic 40.0%
CTTGAGTAAGTAGGGTTGTT+TGG - chr7_4:21851983-21852002 Msa1145240:intron 40.0%
GTAAGTAGGGTTGTTTGGAT+TGG - chr7_4:21851988-21852007 Msa1145240:intron 40.0%
CATTGCAGTTGAGCTTATGA+AGG - chr7_4:21852485-21852504 Msa1145240:intron 40.0%
CTTTAACAACGAACTCTGCA+GGG + chr7_4:21852608-21852627 None:intergenic 40.0%
TCTTTAACAACGAACTCTGC+AGG + chr7_4:21852609-21852628 None:intergenic 40.0%
TGCAGAGTTCGTTGTTAAAG+AGG - chr7_4:21852608-21852627 Msa1145240:CDS 40.0%
AAAGTGTGTCCGTTTGTTCC+TGG + chr7_4:21851221-21851240 None:intergenic 45.0%
CGGACACACTTTGATTGCTA+AGG - chr7_4:21851229-21851248 Msa1145240:three_prime_UTR 45.0%
ACTGTTCTGCAAAAAGGTGG+AGG - chr7_4:21851266-21851285 Msa1145240:CDS 45.0%
AGACCTTCTTCATCTTCTCG+TGG - chr7_4:21851293-21851312 Msa1145240:CDS 45.0%
TGTCTCATCGGTGATGAAAC+TGG - chr7_4:21851344-21851363 Msa1145240:CDS 45.0%
ATTGCGAGCGGTGAAAATGA+TGG + chr7_4:21851372-21851391 None:intergenic 45.0%
AGAACCTTGTTCATTGCGAG+CGG + chr7_4:21851384-21851403 None:intergenic 45.0%
AGAGGAAGGAAAATGGGAGT+AGG - chr7_4:21851921-21851940 Msa1145240:intron 45.0%
TCGCAGTCGATTGCAAATTG+TGG + chr7_4:21852342-21852361 None:intergenic 45.0%
GTTTAAGGGATCAATGAGGC+TGG - chr7_4:21852548-21852567 Msa1145240:CDS 45.0%
AAAGTGTGTCCGTTTGTTCC+TGG + chr7_4:21851221-21851240 None:intergenic 45.0%
CGGACACACTTTGATTGCTA+AGG - chr7_4:21851229-21851248 Msa1145240:three_prime_UTR 45.0%
ACTGTTCTGCAAAAAGGTGG+AGG - chr7_4:21851266-21851285 Msa1145240:CDS 45.0%
AGACCTTCTTCATCTTCTCG+TGG - chr7_4:21851293-21851312 Msa1145240:CDS 45.0%
TGTCTCATCGGTGATGAAAC+TGG - chr7_4:21851344-21851363 Msa1145240:CDS 45.0%
ATTGCGAGCGGTGAAAATGA+TGG + chr7_4:21851372-21851391 None:intergenic 45.0%
AGAACCTTGTTCATTGCGAG+CGG + chr7_4:21851384-21851403 None:intergenic 45.0%
AGAGGAAGGAAAATGGGAGT+AGG - chr7_4:21851921-21851940 Msa1145240:intron 45.0%
TCGCAGTCGATTGCAAATTG+TGG + chr7_4:21852342-21852361 None:intergenic 45.0%
GTTTAAGGGATCAATGAGGC+TGG - chr7_4:21852548-21852567 Msa1145240:CDS 45.0%
! GGGTTTTCTCTTTGCGGGTT+TGG + chr7_4:21851171-21851190 None:intergenic 50.0%
TTCACCGCTCGCAATGAACA+AGG - chr7_4:21851377-21851396 Msa1145240:CDS 50.0%
! CTCAAGGATTTGCTCCCTGA+AGG + chr7_4:21851969-21851988 None:intergenic 50.0%
TCTTAAGCGCGCCACTTACA+TGG - chr7_4:21852203-21852222 Msa1145240:intron 50.0%
GCAGTTGAGCTTATGAAGGC+TGG - chr7_4:21852489-21852508 Msa1145240:intron 50.0%
AATGCGCCCCCATTTGTCAA+CGG + chr7_4:21852574-21852593 None:intergenic 50.0%
! GGGTTTTCTCTTTGCGGGTT+TGG + chr7_4:21851171-21851190 None:intergenic 50.0%
TTCACCGCTCGCAATGAACA+AGG - chr7_4:21851377-21851396 Msa1145240:CDS 50.0%
! CTCAAGGATTTGCTCCCTGA+AGG + chr7_4:21851969-21851988 None:intergenic 50.0%
TCTTAAGCGCGCCACTTACA+TGG - chr7_4:21852203-21852222 Msa1145240:intron 50.0%
GCAGTTGAGCTTATGAAGGC+TGG - chr7_4:21852489-21852508 Msa1145240:intron 50.0%
AATGCGCCCCCATTTGTCAA+CGG + chr7_4:21852574-21852593 None:intergenic 50.0%
! TGAGGCTGGCCGTTGACAAA+TGG - chr7_4:21852562-21852581 Msa1145240:CDS 55.0%
! GAGGCTGGCCGTTGACAAAT+GGG - chr7_4:21852563-21852582 Msa1145240:CDS 55.0%
! AGGCTGGCCGTTGACAAATG+GGG - chr7_4:21852564-21852583 Msa1145240:CDS 55.0%
! TGACAAATGGGGGCGCATTG+AGG - chr7_4:21852575-21852594 Msa1145240:CDS 55.0%
! TGAGGCTGGCCGTTGACAAA+TGG - chr7_4:21852562-21852581 Msa1145240:CDS 55.0%
! GAGGCTGGCCGTTGACAAAT+GGG - chr7_4:21852563-21852582 Msa1145240:CDS 55.0%
! AGGCTGGCCGTTGACAAATG+GGG - chr7_4:21852564-21852583 Msa1145240:CDS 55.0%
! TGACAAATGGGGGCGCATTG+AGG - chr7_4:21852575-21852594 Msa1145240:CDS 55.0%
! GGCTGGCCGTTGACAAATGG+GGG - chr7_4:21852565-21852584 Msa1145240:CDS 60.0%
! GGCTGGCCGTTGACAAATGG+GGG - chr7_4:21852565-21852584 Msa1145240:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 21850988 21852945 21850988 ID=Msa1145240;Name=Msa1145240
chr7_4 mRNA 21850988 21852945 21850988 ID=Msa1145240-mRNA-1;Parent=Msa1145240;Name=Msa1145240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=143|1|1|1|1|1|2|262|152
chr7_4 exon 21850988 21851440 21850988 ID=Msa1145240-mRNA-1:exon:5301;Parent=Msa1145240-mRNA-1
chr7_4 exon 21852535 21852945 21852535 ID=Msa1145240-mRNA-1:exon:5300;Parent=Msa1145240-mRNA-1
chr7_4 five_prime_UTR 21852803 21852945 21852803 ID=Msa1145240-mRNA-1:five_prime_utr;Parent=Msa1145240-mRNA-1
chr7_4 CDS 21852535 21852802 21852535 ID=Msa1145240-mRNA-1:cds;Parent=Msa1145240-mRNA-1
chr7_4 CDS 21851250 21851440 21851250 ID=Msa1145240-mRNA-1:cds;Parent=Msa1145240-mRNA-1
chr7_4 three_prime_UTR 21850988 21851249 21850988 ID=Msa1145240-mRNA-1:three_prime_utr;Parent=Msa1145240-mRNA-1
Gene Sequence

>Msa1145240

ATGGCATCATCGAATGTTGTTTCACATGAAGATGGAACCAAACCCGCAAAGAGAAAACCCACTTTCACAAAAGTGGATCAGATGAAACCAGGAACAAACGGACACACTTTGATTGCTAAGGTTTTAACCTCCGAAACTGTTCTGCAAAAAGGTGGAGGAACAAGACCTTCTTCATCTTCTCGTGGTATTGTTCGTCCTACTCTTATCTCTGAGTGTCTCATCGGTGATGAAACTGGTACCATCATTTTCACCGCTCGCAATGAACAAGTTGAGCTTATGAAGGCTGGAAATACAGTAATCATTCGCAATGCAAAGATTGACATGTTTAAGGGATCAATGAGGCTGGCCGTTGACAAATGGGGGCGCATTGAGGTCACTGACCCTGCAGAGTTCGTTGTTAAAGAGGATAACAACCTATCTCTCATTGAATATGAATTGGTGAACGCAGTTGAAGAGTAA

Protein sequence

>Msa1145240

MASSNVVSHEDGTKPAKRKPTFTKVDQMKPGTNGHTLIAKVLTSETVLQKGGGTRPSSSSRGIVRPTLISECLIGDETGTIIFTARNEQVELMKAGNTVIIRNAKIDMFKGSMRLAVDKWGRIEVTDPAEFVVKEDNNLSLIEYELVNAVEE*