AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980880 MtrunA17_Chr6g0461241 92.386 197 15 0 38 234 1 197 9.00e-33 129
Msa0980880 MtrunA17_Chr6g0461241 88.421 95 8 1 397 491 317 408 3.08e-18 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCTTGCATCATAATTT+TGG 0.153696 6_4:-19436086 Msa0980880:CDS
AGTGGTTGCTGAGGATAAAA+AGG 0.295046 6_4:-19435703 Msa0980880:CDS
CTTCAGCTTGCTGACATCAT+TGG 0.314579 6_4:+19434822 None:intergenic
GGATGAAAAGAAGAAGAAAA+AGG 0.339456 6_4:-19435637 Msa0980880:CDS
TATAAAATAGAACCAGAAAA+TGG 0.366862 6_4:-19433935 Msa0980880:CDS
TGGCGAAGAGAATAAGAAAA+AGG 0.375379 6_4:-19435187 Msa0980880:CDS
CTTCTTCTCTTCTCCATCAT+CGG 0.378473 6_4:+19435395 None:intergenic
GAAAAGAAAGACAAGGGAAA+GGG 0.380268 6_4:-19435222 Msa0980880:CDS
GAAAAGAAAGACAAGGGAAA+GGG 0.380268 6_4:-19435357 Msa0980880:CDS
GAAAGAGAAGAAAGATGATA+AGG 0.398401 6_4:-19435001 Msa0980880:CDS
GAAGTTGTTTCGAGGGAGAT+AGG 0.398534 6_4:-19434976 Msa0980880:CDS
GGGAAGAAGAGAAAGTTATC+TGG 0.404078 6_4:-19434856 Msa0980880:CDS
TCAGATGATTCTAAAGATAT+CGG 0.416847 6_4:-19435900 Msa0980880:CDS
GAAAGAAAAGGTGAAAAGTA+AGG 0.419739 6_4:-19435745 Msa0980880:CDS
ATCTTCTTCCGCTTTCTCCT+CGG 0.426624 6_4:+19434942 None:intergenic
TGAGAAAGAAGGTGATGTAA+AGG 0.431997 6_4:-19436006 Msa0980880:CDS
CTTCTTCGCTTCTCCTTCAT+CGG 0.436907 6_4:+19435101 None:intergenic
AGAAACACTTCTTGAACAAA+AGG 0.438069 6_4:-19434770 Msa0980880:CDS
GTTCTTCTCTTCTCCATCAT+CGG 0.438481 6_4:+19435260 None:intergenic
ATCTCTTTGCACAACACAAC+AGG 0.438715 6_4:-19437255 Msa0980880:intron
CAAAAGCTTGAAAAGATCAA+TGG 0.445389 6_4:-19434799 Msa0980880:CDS
AGGAGAGGATAGTGAAAAGA+AGG 0.464984 6_4:-19435565 Msa0980880:CDS
GAAGATGAGGAAATTGATGA+TGG 0.465754 6_4:-19434925 Msa0980880:CDS
AGAAAAGAAAGACAAGGGAA+AGG 0.469773 6_4:-19435223 Msa0980880:CDS
AGAAAAGAAAGACAAGGGAA+AGG 0.469773 6_4:-19435358 Msa0980880:CDS
GAAAACAGAGAAGAAAGAAA+AGG 0.469942 6_4:-19435757 Msa0980880:CDS
AAAAGCTTGAAAAGATCAAT+GGG 0.470870 6_4:-19434798 Msa0980880:CDS
TGAAGGTGAAGACGGTAAGA+AGG 0.475165 6_4:-19435670 Msa0980880:CDS
GAAGAGAAAGTTATCTGGAA+AGG 0.479246 6_4:-19434851 Msa0980880:CDS
CATTAATTTCAGCAATTCCA+TGG 0.479537 6_4:-19433991 Msa0980880:intron
AAACAAGGGTGAGGAAGAAG+AGG 0.485502 6_4:-19435055 Msa0980880:CDS
ACACGGTGACAAGGAAGAAA+AGG 0.490673 6_4:-19435856 Msa0980880:CDS
GGGGAAAGAAGATGTAGGAG+AGG 0.491438 6_4:-19435580 Msa0980880:CDS
AAGGAGAATAAAGACAAGGA+TGG 0.499016 6_4:-19435726 Msa0980880:CDS
CGATGAAGGAGAAGCGAAGA+AGG 0.499033 6_4:-19435100 Msa0980880:CDS
GTGGTGAAATCGACGGGAAA+GGG 0.501431 6_4:-19435492 Msa0980880:CDS
TCTAAAGATATCGGTGAAGA+TGG 0.508358 6_4:-19435891 Msa0980880:CDS
TGATAAAATCAAGCCGAAGA+AGG 0.516483 6_4:-19435136 Msa0980880:CDS
CTTCAGTTCTACTTCTAACT+CGG 0.517888 6_4:+19435974 None:intergenic
CGATGATGGAGAAGAGAAGA+AGG 0.519003 6_4:-19435394 Msa0980880:CDS
GGAAAGGGAGATGAGGATGA+TGG 0.533215 6_4:-19435207 Msa0980880:CDS
ATAAGGATGAAGTTGTTTCG+AGG 0.535585 6_4:-19434984 Msa0980880:CDS
AAAGAAGACAAGGACAAAGG+TGG 0.536507 6_4:-19434877 Msa0980880:CDS
AGACAAGGGAAAGGGAGATG+AGG 0.545147 6_4:-19435214 Msa0980880:CDS
TGGGAAGGAAGTGAAAGAGA+AGG 0.550834 6_4:-19434905 Msa0980880:CDS
TGAAGAGATCGAAACAAAGA+AGG 0.552163 6_4:-19435607 Msa0980880:CDS
TAAGGATGAAGTTGTTTCGA+GGG 0.553952 6_4:-19434983 Msa0980880:CDS
TGTGGTGAAATCGACGGGAA+AGG 0.558629 6_4:-19435493 Msa0980880:CDS
AAAGGTGATGAAGGTGAAGA+CGG 0.561058 6_4:-19435678 Msa0980880:CDS
AAGAAGACAAGGACAAAGGT+GGG 0.568761 6_4:-19434876 Msa0980880:CDS
CGAGTTAGAAGTAGAACTGA+AGG 0.569653 6_4:-19435973 Msa0980880:CDS
TGAGGAAATTGATGATGGGA+AGG 0.571455 6_4:-19434920 Msa0980880:CDS
AAGACTGAGGATGAGAAAGA+AGG 0.573061 6_4:-19436017 Msa0980880:CDS
GAATAAAGACAAGGATGGAG+TGG 0.576722 6_4:-19435721 Msa0980880:CDS
GGAGAAAGCGGAAGAAGATG+AGG 0.582784 6_4:-19434938 Msa0980880:CDS
AACAAGGGTGAGGAAGAAGA+GGG 0.584773 6_4:-19435054 Msa0980880:CDS
GGAAAGGGAGACGAGGATGA+CGG 0.585914 6_4:-19435342 Msa0980880:CDS
GATGATGTGGTGAAATCGAC+GGG 0.591968 6_4:-19435498 Msa0980880:CDS
ATCGAAACAAAGAAGGACAA+GGG 0.592480 6_4:-19435600 Msa0980880:CDS
ATACGAGAAGCAGAAGATGA+AGG 0.592634 6_4:-19434730 Msa0980880:intron
AAGATGAGGAAATTGATGAT+GGG 0.593304 6_4:-19434924 Msa0980880:CDS
GACAAGGGGAAAGAAGATGT+AGG 0.593494 6_4:-19435585 Msa0980880:CDS
ATCGACGGGAAAGGGAGAAG+AGG 0.608750 6_4:-19435484 Msa0980880:CDS
TCGAAACAAAGAAGGACAAG+GGG 0.610740 6_4:-19435599 Msa0980880:CDS
ACAAAAGACCGAGGAGAAAG+CGG 0.613724 6_4:-19434950 Msa0980880:CDS
GTGTTGTCATATATGTACCA+TGG 0.616201 6_4:+19433974 None:intergenic
GATCGAAACAAAGAAGGACA+AGG 0.618475 6_4:-19435601 Msa0980880:CDS
CAAGGATGGAGTGGTTGCTG+AGG 0.621637 6_4:-19435712 Msa0980880:CDS
TGAGAATAAACACGGTGACA+AGG 0.628299 6_4:-19435865 Msa0980880:CDS
GGAAAGGGAGAAGAGGATGA+CGG 0.633241 6_4:-19435477 Msa0980880:CDS
AGACAAGGGAAAGGGAGACG+AGG 0.635113 6_4:-19435349 Msa0980880:CDS
GTTGTTTCGAGGGAGATAGG+TGG 0.649540 6_4:-19434973 Msa0980880:CDS
CTCTCTAAAGATCAAGACTG+AGG 0.653524 6_4:-19436030 Msa0980880:CDS
TGATGATGTGGTGAAATCGA+CGG 0.654535 6_4:-19435499 Msa0980880:CDS
AAGTAAGGAGAATAAAGACA+AGG 0.656406 6_4:-19435730 Msa0980880:CDS
AAAGCACAAGGATGATGATG+TGG 0.673676 6_4:-19435511 Msa0980880:CDS
GATGGTAGTGAGAATAAACA+CGG 0.724895 6_4:-19435873 Msa0980880:CDS
GATAGGTGGACAAAAGACCG+AGG 0.748856 6_4:-19434959 Msa0980880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAATAAAGATAGA+AGG + chr6_4:19434049-19434068 None:intergenic 10.0%
!!! ATATATTAAGTTGTAGAATT+AGG - chr6_4:19434089-19434108 Msa0980880:intron 15.0%
!!! TATATTAAGTTGTAGAATTA+GGG - chr6_4:19434090-19434109 Msa0980880:intron 15.0%
!! AACAAAAAACAAAACAAAAA+AGG + chr6_4:19434187-19434206 None:intergenic 15.0%
!! AAAAAAGAAAAGAAAAACAA+GGG - chr6_4:19436158-19436177 Msa0980880:intron 15.0%
!!! AATAAATATGTCTTTTGATT+AGG - chr6_4:19436820-19436839 Msa0980880:intron 15.0%
!!! ATAAATATGTCTTTTGATTA+GGG - chr6_4:19436821-19436840 Msa0980880:intron 15.0%
!! TAACATCATATAGATTTAAT+CGG - chr6_4:19437053-19437072 Msa0980880:intron 15.0%
!! AAAAGATATATAGATTTGAT+TGG - chr6_4:19437157-19437176 Msa0980880:intron 15.0%
!! CAAATAAGTCTATCAAATTA+AGG + chr6_4:19434249-19434268 None:intergenic 20.0%
!! CAATGAAATAATATTCATTC+TGG + chr6_4:19434615-19434634 None:intergenic 20.0%
!! CAGAATGAATATTATTTCAT+TGG - chr6_4:19434613-19434632 Msa0980880:intron 20.0%
!! AAAAAAGAAAAGAAAGACAA+GGG - chr6_4:19435864-19435883 Msa0980880:CDS 20.0%
!! AAAAAAGAAAAGAAAGACAA+GGG - chr6_4:19435864-19435883 Msa0980880:CDS 20.0%
!! GAAAAAAGAAAAGAAAAACA+AGG - chr6_4:19436157-19436176 Msa0980880:intron 20.0%
!! TATAGAGAATGAAATCAAAA+TGG + chr6_4:19436885-19436904 None:intergenic 20.0%
!!! TTATTTCTGAAACACATAAA+AGG - chr6_4:19437015-19437034 Msa0980880:intron 20.0%
!! AATGAAAGTTATGTTATGAT+TGG + chr6_4:19437220-19437239 None:intergenic 20.0%
!! TATAAAATAGAACCAGAAAA+TGG - chr6_4:19437292-19437311 Msa0980880:CDS 20.0%
! GTGTGAAAAGAAAACTAAAT+AGG - chr6_4:19434221-19434240 Msa0980880:intron 25.0%
! GTAAGATTTAAGAACCAATT+TGG + chr6_4:19434441-19434460 None:intergenic 25.0%
! GATAAAACAAGAATCAATCA+TGG + chr6_4:19434675-19434694 None:intergenic 25.0%
!! TCTGTTTGGATTGATTTATT+TGG - chr6_4:19434722-19434741 Msa0980880:intron 25.0%
!! CTGTTTGGATTGATTTATTT+GGG - chr6_4:19434723-19434742 Msa0980880:intron 25.0%
!! ATAAGTTGAAAACAGCTTAT+GGG + chr6_4:19434834-19434853 None:intergenic 25.0%
!! AATAAGTTGAAAACAGCTTA+TGG + chr6_4:19434835-19434854 None:intergenic 25.0%
!! AGTTTCTTGCATCATAATTT+TGG - chr6_4:19435141-19435160 Msa0980880:CDS 25.0%
!! TCAGATGATTCTAAAGATAT+CGG - chr6_4:19435327-19435346 Msa0980880:CDS 25.0%
! GAAAAAAGAAAAGAAAGACA+AGG - chr6_4:19435863-19435882 Msa0980880:CDS 25.0%
! GAAAAAAGAAAAGAAAGACA+AGG - chr6_4:19435863-19435882 Msa0980880:CDS 25.0%
! AAAAGCTTGAAAAGATCAAT+GGG - chr6_4:19436429-19436448 Msa0980880:intron 25.0%
! AATTAATTGCGAAGTGAAAT+AGG - chr6_4:19436933-19436952 Msa0980880:intron 25.0%
!!! AAACTTTGAAAGCATTTAGT+TGG + chr6_4:19436997-19437016 None:intergenic 25.0%
!! GTACTTTTGTTAGCTTCTTT+TGG + chr6_4:19433943-19433962 Msa0980870:three_prime_UTR 30.0%
TAGAATTAGGGACCAAAATA+GGG - chr6_4:19434102-19434121 Msa0980880:intron 30.0%
!!! CATGATCTTTTGAAACAACT+TGG + chr6_4:19434463-19434482 None:intergenic 30.0%
TGCAGTAACATATGTATAAG+CGG - chr6_4:19434579-19434598 Msa0980880:intron 30.0%
GAGATACCTGTTTACTATAT+AGG - chr6_4:19434699-19434718 Msa0980880:intron 30.0%
AACAGACCTATATAGTAAAC+AGG + chr6_4:19434708-19434727 None:intergenic 30.0%
GTTTACTATATAGGTCTGTT+TGG - chr6_4:19434708-19434727 Msa0980880:intron 30.0%
! GATTGATTTATTTGGGCTTA+TGG - chr6_4:19434730-19434749 Msa0980880:intron 30.0%
!! CTTATTTCTACAAGCTTTCT+AGG - chr6_4:19434849-19434868 Msa0980880:CDS 30.0%
! CGTTATCTTGTTTGATATGA+TGG + chr6_4:19435062-19435081 None:intergenic 30.0%
! TTTTGCATGTACATGTATTG+TGG - chr6_4:19435100-19435119 Msa0980880:CDS 30.0%
! TTTTGGCGATAATCTAGAAA+TGG - chr6_4:19435158-19435177 Msa0980880:CDS 30.0%
! AGAGAAAAAGAAAAAGCACA+AGG - chr6_4:19435293-19435312 Msa0980880:CDS 30.0%
AGAAAAGGACAAGAAAAAGA+AGG - chr6_4:19435386-19435405 Msa0980880:CDS 30.0%
AAAGAAAAAGACGACAAAAG+TGG - chr6_4:19435414-19435433 Msa0980880:CDS 30.0%
GAAAACAGAGAAGAAAGAAA+AGG - chr6_4:19435470-19435489 Msa0980880:CDS 30.0%
GAAAGAAAAGGTGAAAAGTA+AGG - chr6_4:19435482-19435501 Msa0980880:CDS 30.0%
AAGTAAGGAGAATAAAGACA+AGG - chr6_4:19435497-19435516 Msa0980880:CDS 30.0%
GGATGAAAAGAAGAAGAAAA+AGG - chr6_4:19435590-19435609 Msa0980880:CDS 30.0%
AAAAAGCGAAAAGAAAGAGA+AGG - chr6_4:19435686-19435705 Msa0980880:CDS 30.0%
AGAGAGTAAGAAAAAGAAGA+AGG - chr6_4:19435776-19435795 Msa0980880:CDS 30.0%
GGATAAGAAAGAAAAAGAGA+AGG - chr6_4:19435797-19435816 Msa0980880:CDS 30.0%
AAAGAAAAAGAGAAGGATAG+TGG - chr6_4:19435804-19435823 Msa0980880:CDS 30.0%
AGAGAGTAAGAAAAAGAAGA+AGG - chr6_4:19435776-19435795 Msa0980880:CDS 30.0%
GGATAAGAAAGAAAAAGAGA+AGG - chr6_4:19435797-19435816 Msa0980880:CDS 30.0%
GGATGAGAAAAAAAAAGAGA+AGG - chr6_4:19436061-19436080 Msa0980880:CDS 30.0%
GAAAAAAAAAGAGAAGGACA+AGG - chr6_4:19436067-19436086 Msa0980880:CDS 30.0%
!!! GTTTTTTCACTTTCCTTCTT+CGG + chr6_4:19436107-19436126 None:intergenic 30.0%
GAAAGAGAAGAAAGATGATA+AGG - chr6_4:19436226-19436245 Msa0980880:intron 30.0%
! AAGATGAGGAAATTGATGAT+GGG - chr6_4:19436303-19436322 Msa0980880:intron 30.0%
AAAAAAGAAGACAAGGACAA+AGG - chr6_4:19436347-19436366 Msa0980880:intron 30.0%
CAAAAGCTTGAAAAGATCAA+TGG - chr6_4:19436428-19436447 Msa0980880:intron 30.0%
AGAAACACTTCTTGAACAAA+AGG - chr6_4:19436457-19436476 Msa0980880:intron 30.0%
AAGTTTGAGAACTAGATGAA+TGG - chr6_4:19436788-19436807 Msa0980880:intron 30.0%
!! TGTGATATGTGTTGATTATG+TGG + chr6_4:19436968-19436987 None:intergenic 30.0%
TTTAACTCTCTGATTCTCAA+AGG + chr6_4:19437129-19437148 None:intergenic 30.0%
CATTAATTTCAGCAATTCCA+TGG - chr6_4:19437236-19437255 Msa0980880:intron 30.0%
AGGAAGATAGATCATGTGAA+TGG + chr6_4:19434029-19434048 None:intergenic 35.0%
GTAGAATTAGGGACCAAAAT+AGG - chr6_4:19434101-19434120 Msa0980880:intron 35.0%
AGAATTAGGGACCAAAATAG+GGG - chr6_4:19434103-19434122 Msa0980880:intron 35.0%
! AATACCAGAATCCCCTATTT+TGG + chr6_4:19434117-19434136 None:intergenic 35.0%
CTCAATTCAGGAATTGTAAG+TGG + chr6_4:19434142-19434161 None:intergenic 35.0%
CACTTACAATTCCTGAATTG+AGG - chr6_4:19434140-19434159 Msa0980880:intron 35.0%
CAAAATCATGACCTCAATTC+AGG + chr6_4:19434154-19434173 None:intergenic 35.0%
!!! TGAGGTCATGATTTTGAGTT+TGG - chr6_4:19434158-19434177 Msa0980880:intron 35.0%
ACTTATTTGAGCTTATCTCC+TGG - chr6_4:19434260-19434279 Msa0980880:intron 35.0%
! AAGAACCAATTTGGTAGCTT+TGG + chr6_4:19434432-19434451 None:intergenic 35.0%
AGTTCAAAGAATCGAAGCTA+TGG + chr6_4:19434524-19434543 None:intergenic 35.0%
CTTCGATTCTTTGAACTGAT+GGG - chr6_4:19434527-19434546 Msa0980880:intron 35.0%
CACATGTTAATCAACCGAAT+AGG + chr6_4:19434561-19434580 None:intergenic 35.0%
! ATTTCATTGGTGACTATGCT+TGG - chr6_4:19434626-19434645 Msa0980880:intron 35.0%
AGACTATTTGTGAGAGCTTA+TGG - chr6_4:19434791-19434810 Msa0980880:CDS 35.0%
! TCCAAACATGATTGTTTTCG+TGG - chr6_4:19435005-19435024 Msa0980880:CDS 35.0%
TCCACGAAAACAATCATGTT+TGG + chr6_4:19435009-19435028 None:intergenic 35.0%
! AACATGATTGTTTTCGTGGA+AGG - chr6_4:19435009-19435028 Msa0980880:CDS 35.0%
! ACATGATTGTTTTCGTGGAA+GGG - chr6_4:19435010-19435029 Msa0980880:CDS 35.0%
TGAGAAAGAAGGTGATGTAA+AGG - chr6_4:19435221-19435240 Msa0980880:CDS 35.0%
CTTCAGTTCTACTTCTAACT+CGG + chr6_4:19435256-19435275 None:intergenic 35.0%
TCTAAAGATATCGGTGAAGA+TGG - chr6_4:19435336-19435355 Msa0980880:CDS 35.0%
! GATGGTAGTGAGAATAAACA+CGG - chr6_4:19435354-19435373 Msa0980880:CDS 35.0%
AAGGAGAATAAAGACAAGGA+TGG - chr6_4:19435501-19435520 Msa0980880:CDS 35.0%
AAAAAGGGTAAAGGTGATGA+AGG - chr6_4:19435540-19435559 Msa0980880:CDS 35.0%
TGAAGAGATCGAAACAAAGA+AGG - chr6_4:19435620-19435639 Msa0980880:CDS 35.0%
ATCGAAACAAAGAAGGACAA+GGG - chr6_4:19435627-19435646 Msa0980880:CDS 35.0%
! GAAGGATAAGAAAAAGCACA+AGG - chr6_4:19435704-19435723 Msa0980880:CDS 35.0%
AGAAAAGAAAGACAAGGGAA+AGG - chr6_4:19435869-19435888 Msa0980880:CDS 35.0%
GAAAAGAAAGACAAGGGAAA+GGG - chr6_4:19435870-19435889 Msa0980880:CDS 35.0%
AAAGAAAAAGAGAAGGACAG+TGG - chr6_4:19435939-19435958 Msa0980880:CDS 35.0%
AGAAAAGAAAGACAAGGGAA+AGG - chr6_4:19435869-19435888 Msa0980880:CDS 35.0%
GAAAAGAAAGACAAGGGAAA+GGG - chr6_4:19435870-19435889 Msa0980880:CDS 35.0%
TGGCGAAGAGAATAAGAAAA+AGG - chr6_4:19436040-19436059 Msa0980880:CDS 35.0%
TGATAAAATCAAGCCGAAGA+AGG - chr6_4:19436091-19436110 Msa0980880:CDS 35.0%
GAAAGTGAAAAAACCGATGA+AGG - chr6_4:19436113-19436132 Msa0980880:intron 35.0%
AGAAAAGAAAAACAAGGGTG+AGG - chr6_4:19436163-19436182 Msa0980880:intron 35.0%
! ATAAGGATGAAGTTGTTTCG+AGG - chr6_4:19436243-19436262 Msa0980880:intron 35.0%
! TAAGGATGAAGTTGTTTCGA+GGG - chr6_4:19436244-19436263 Msa0980880:intron 35.0%
GAAGATGAGGAAATTGATGA+TGG - chr6_4:19436302-19436321 Msa0980880:intron 35.0%
GAAGGAGAAAAAAGAAGACA+AGG - chr6_4:19436340-19436359 Msa0980880:intron 35.0%
GAAGAGAAAGTTATCTGGAA+AGG - chr6_4:19436376-19436395 Msa0980880:intron 35.0%
ACAGTCGACACTTCAAATAA+AGG - chr6_4:19436579-19436598 Msa0980880:intron 35.0%
! TCTGTGTTATTGCTTCATAC+AGG - chr6_4:19436729-19436748 Msa0980880:intron 35.0%
TCACTTCGCAATTAATTGCT+TGG + chr6_4:19436930-19436949 None:intergenic 35.0%
ACCAAACTCTGAATAACGAT+TGG - chr6_4:19437097-19437116 Msa0980880:intron 35.0%
ACCAATCGTTATTCAGAGTT+TGG + chr6_4:19437101-19437120 None:intergenic 35.0%
GTGTTGTCATATATGTACCA+TGG + chr6_4:19437256-19437275 None:intergenic 35.0%
ATCTCTTTGCACAACACAAC+AGG - chr6_4:19433972-19433991 Msa0980880:CDS 40.0%
ACAGACCAAAGCTACCAAAT+TGG - chr6_4:19434424-19434443 Msa0980880:intron 40.0%
GCTTCGATTCTTTGAACTGA+TGG - chr6_4:19434526-19434545 Msa0980880:intron 40.0%
GATGGGACTATTCTCCTATT+CGG - chr6_4:19434544-19434563 Msa0980880:intron 40.0%
! ATTGGTGACTATGCTTGGTT+TGG - chr6_4:19434631-19434650 Msa0980880:intron 40.0%
! CTCTCTAAAGATCAAGACTG+AGG - chr6_4:19435197-19435216 Msa0980880:CDS 40.0%
AAGACTGAGGATGAGAAAGA+AGG - chr6_4:19435210-19435229 Msa0980880:CDS 40.0%
CGAGTTAGAAGTAGAACTGA+AGG - chr6_4:19435254-19435273 Msa0980880:CDS 40.0%
TGAGAATAAACACGGTGACA+AGG - chr6_4:19435362-19435381 Msa0980880:CDS 40.0%
GAATAAAGACAAGGATGGAG+TGG - chr6_4:19435506-19435525 Msa0980880:CDS 40.0%
AGTGGTTGCTGAGGATAAAA+AGG - chr6_4:19435524-19435543 Msa0980880:CDS 40.0%
GTGGTTGCTGAGGATAAAAA+GGG - chr6_4:19435525-19435544 Msa0980880:CDS 40.0%
GCTGAGGATAAAAAGGGTAA+AGG - chr6_4:19435531-19435550 Msa0980880:CDS 40.0%
AAAGGTGATGAAGGTGAAGA+CGG - chr6_4:19435549-19435568 Msa0980880:CDS 40.0%
CGGTAAGAAGGAGAAAAAGA+AGG - chr6_4:19435569-19435588 Msa0980880:CDS 40.0%
GATCGAAACAAAGAAGGACA+AGG - chr6_4:19435626-19435645 Msa0980880:CDS 40.0%
TCGAAACAAAGAAGGACAAG+GGG - chr6_4:19435628-19435647 Msa0980880:CDS 40.0%
AGGAGAGGATAGTGAAAAGA+AGG - chr6_4:19435662-19435681 Msa0980880:CDS 40.0%
! AAAGCACAAGGATGATGATG+TGG - chr6_4:19435716-19435735 Msa0980880:CDS 40.0%
! TGATGATGTGGTGAAATCGA+CGG - chr6_4:19435728-19435747 Msa0980880:CDS 40.0%
!! GATAGTGGAAAAACCGATGA+TGG - chr6_4:19435819-19435838 Msa0980880:CDS 40.0%
CTTCTTCTCTTCTCCATCAT+CGG + chr6_4:19435835-19435854 None:intergenic 40.0%
GTTCTTCTCTTCTCCATCAT+CGG + chr6_4:19435970-19435989 None:intergenic 40.0%
!! TGAGGAAATTGATGATGGGA+AGG - chr6_4:19436307-19436326 Msa0980880:intron 40.0%
AAAGAAGACAAGGACAAAGG+TGG - chr6_4:19436350-19436369 Msa0980880:intron 40.0%
AAGAAGACAAGGACAAAGGT+GGG - chr6_4:19436351-19436370 Msa0980880:intron 40.0%
GGGAAGAAGAGAAAGTTATC+TGG - chr6_4:19436371-19436390 Msa0980880:intron 40.0%
ATACGAGAAGCAGAAGATGA+AGG - chr6_4:19436497-19436516 Msa0980880:intron 40.0%
ACAACATTGACACACACACA+CGG - chr6_4:19436639-19436658 Msa0980880:intron 40.0%
TTACGTATCAGTGTCGTGTT+CGG - chr6_4:19436704-19436723 Msa0980880:intron 40.0%
TCGTTATTCAGAGTTTGGTC+AGG + chr6_4:19437096-19437115 None:intergenic 40.0%
AGTTCACAAGTGCTTAAGCC+AGG + chr6_4:19434281-19434300 None:intergenic 45.0%
AGAATCGAAGCTATGGACCT+TGG + chr6_4:19434517-19434536 None:intergenic 45.0%
ACACGGTGACAAGGAAGAAA+AGG - chr6_4:19435371-19435390 Msa0980880:CDS 45.0%
TGAAGGTGAAGACGGTAAGA+AGG - chr6_4:19435557-19435576 Msa0980880:CDS 45.0%
GACAAGGGGAAAGAAGATGT+AGG - chr6_4:19435642-19435661 Msa0980880:CDS 45.0%
GATGATGTGGTGAAATCGAC+GGG - chr6_4:19435729-19435748 Msa0980880:CDS 45.0%
!! CGATGATGGAGAAGAGAAGA+AGG - chr6_4:19435833-19435852 Msa0980880:CDS 45.0%
GACAGTGGAAAAACCGATGA+TGG - chr6_4:19435954-19435973 Msa0980880:CDS 45.0%
CTTCTTCGCTTCTCCTTCAT+CGG + chr6_4:19436129-19436148 None:intergenic 45.0%
AAACAAGGGTGAGGAAGAAG+AGG - chr6_4:19436172-19436191 Msa0980880:intron 45.0%
AACAAGGGTGAGGAAGAAGA+GGG - chr6_4:19436173-19436192 Msa0980880:intron 45.0%
! GAAGTTGTTTCGAGGGAGAT+AGG - chr6_4:19436251-19436270 Msa0980880:intron 45.0%
ACAAAAGACCGAGGAGAAAG+CGG - chr6_4:19436277-19436296 Msa0980880:intron 45.0%
ATCTTCTTCCGCTTTCTCCT+CGG + chr6_4:19436288-19436307 None:intergenic 45.0%
TGGGAAGGAAGTGAAAGAGA+AGG - chr6_4:19436322-19436341 Msa0980880:intron 45.0%
!! CTTCAGCTTGCTGACATCAT+TGG + chr6_4:19436408-19436427 None:intergenic 45.0%
AGATGAAGGTTATGTCGTCG+TGG - chr6_4:19436511-19436530 Msa0980880:intron 45.0%
CATAAAAGGCGAGTTCGAGA+AGG - chr6_4:19437029-19437048 Msa0980880:intron 45.0%
GGGACCAAAATAGGGGATTC+TGG - chr6_4:19434110-19434129 Msa0980880:intron 50.0%
TGGACCTTGGTGAACTCACA+GGG + chr6_4:19434504-19434523 None:intergenic 50.0%
ATGGACCTTGGTGAACTCAC+AGG + chr6_4:19434505-19434524 None:intergenic 50.0%
GGGGAAAGAAGATGTAGGAG+AGG - chr6_4:19435647-19435666 Msa0980880:CDS 50.0%
TGTGGTGAAATCGACGGGAA+AGG - chr6_4:19435734-19435753 Msa0980880:CDS 50.0%
GTGGTGAAATCGACGGGAAA+GGG - chr6_4:19435735-19435754 Msa0980880:CDS 50.0%
GGAAAGGGAGAAGAGGATGA+CGG - chr6_4:19435750-19435769 Msa0980880:CDS 50.0%
AGACAAGGGAAAGGGAGATG+AGG - chr6_4:19436013-19436032 Msa0980880:CDS 50.0%
GGAAAGGGAGATGAGGATGA+TGG - chr6_4:19436020-19436039 Msa0980880:CDS 50.0%
CGATGAAGGAGAAGCGAAGA+AGG - chr6_4:19436127-19436146 Msa0980880:intron 50.0%
! GTTGTTTCGAGGGAGATAGG+TGG - chr6_4:19436254-19436273 Msa0980880:intron 50.0%
GATAGGTGGACAAAAGACCG+AGG - chr6_4:19436268-19436287 Msa0980880:intron 50.0%
GGAGAAAGCGGAAGAAGATG+AGG - chr6_4:19436289-19436308 Msa0980880:intron 50.0%
AGGTTATGTCGTCGTGGAGA+AGG - chr6_4:19436517-19436536 Msa0980880:intron 50.0%
TGCGGTTGAGTAGCTGTTCA+AGG - chr6_4:19436547-19436566 Msa0980880:intron 50.0%
GACACCCTGTGAGTTCACCA+AGG - chr6_4:19434497-19434516 Msa0980880:intron 55.0%
CAAGGATGGAGTGGTTGCTG+AGG - chr6_4:19435515-19435534 Msa0980880:CDS 55.0%
ATCGACGGGAAAGGGAGAAG+AGG - chr6_4:19435743-19435762 Msa0980880:CDS 55.0%
AGACAAGGGAAAGGGAGACG+AGG - chr6_4:19435878-19435897 Msa0980880:CDS 55.0%
GGAAAGGGAGACGAGGATGA+CGG - chr6_4:19435885-19435904 Msa0980880:CDS 55.0%
CAGCTACTCAACCGCATCCT+TGG + chr6_4:19436543-19436562 None:intergenic 55.0%
TGTCGTCGTGGAGAAGGCCA+AGG - chr6_4:19436523-19436542 Msa0980880:intron 60.0%
CGTGGAGAAGGCCAAGGATG+CGG - chr6_4:19436529-19436548 Msa0980880:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19433928 19437321 19433928 ID=Msa0980880;Name=Msa0980880
chr6_4 mRNA 19433928 19437321 19433928 ID=Msa0980880-mRNA-1;Parent=Msa0980880;Name=Msa0980880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0|0.66|1|0.66|3|0|508
chr6_4 exon 19437256 19437321 19437256 ID=Msa0980880-mRNA-1:exon:6070;Parent=Msa0980880-mRNA-1
chr6_4 exon 19434731 19436117 19434731 ID=Msa0980880-mRNA-1:exon:6069;Parent=Msa0980880-mRNA-1
chr6_4 exon 19433928 19434001 19433928 ID=Msa0980880-mRNA-1:exon:6068;Parent=Msa0980880-mRNA-1
chr6_4 CDS 19437256 19437321 19437256 ID=Msa0980880-mRNA-1:cds;Parent=Msa0980880-mRNA-1
chr6_4 CDS 19434731 19436117 19434731 ID=Msa0980880-mRNA-1:cds;Parent=Msa0980880-mRNA-1
chr6_4 CDS 19433928 19434001 19433928 ID=Msa0980880-mRNA-1:cds;Parent=Msa0980880-mRNA-1
Gene Sequence

>Msa0980880

CAGTTCACAGTTCCAAAAGAAGCTAACAAAAGTACAGAATCATCATCTCTTTGCACAACACAACAGATTCAGCTAAGTTTCTTGCATCATAATTTTGGCGATAATCTAGAAATGGAAGACAAATCAACTATCTCTCTAAAGATCAAGACTGAGGATGAGAAAGAAGGTGATGTAAAGGAAGATAAGACCGAGTTAGAAGTAGAACTGAAGGTTAAGAACAAATCAGCAGAGAAAAAGAAAAAGCACAAGGATGAAAAGAAATCAGATGATTCTAAAGATATCGGTGAAGATGGTAGTGAGAATAAACACGGTGACAAGGAAGAAAAGGACAAGAAAAAGAAGGAAAAGAAAGAAAAAGACGACAAAAGTGGCACAAAGAAGCACAAAGAAAAAGATCGCGATGAGAAAACAGAGAAGAAAGAAAAGGTGAAAAGTAAGGAGAATAAAGACAAGGATGGAGTGGTTGCTGAGGATAAAAAGGGTAAAGGTGATGAAGGTGAAGACGGTAAGAAGGAGAAAAAGAAGGATGAAAAGAAGAAGAAAAAGGATAAAGATGAAGAGATCGAAACAAAGAAGGACAAGGGGAAAGAAGATGTAGGAGAGGATAGTGAAAAGAAGGAAAAAAGCGAAAAGAAAGAGAAGGATAAGAAAAAGCACAAGGATGATGATGTGGTGAAATCGACGGGAAAGGGAGAAGAGGATGACGGCGAAGAGAGTAAGAAAAAGAAGAAGGATAAGAAAGAAAAAGAGAAGGATAGTGGAAAAACCGATGATGGAGAAGAGAAGAAGGATGCGAAGAAAAAAGAAAAGAAAGACAAGGGAAAGGGAGACGAGGATGACGGCGAAGAGAGTAAGAAAAAGAAGAAGGATAAGAAAGAAAAAGAGAAGGACAGTGGAAAAACCGATGATGGAGAAGAGAAGAACGATGCAAAGAAAAAAGAAAAGAAAGACAAGGGAAAGGGAGATGAGGATGATGGCGAAGAGAATAAGAAAAAGGATGAGAAAAAAAAAGAGAAGGACAAGGATGATAAAATCAAGCCGAAGAAGGAAAGTGAAAAAACCGATGAAGGAGAAGCGAAGAAGGATAAGAAGAAAAAAGAAAAGAAAAACAAGGGTGAGGAAGAAGAGGGTGAGAAAGACGAGAAAAAAGTAACAAAAAAGAAAGAGAAGAAAGATGATAAGGATGAAGTTGTTTCGAGGGAGATAGGTGGACAAAAGACCGAGGAGAAAGCGGAAGAAGATGAGGAAATTGATGATGGGAAGGAAGTGAAAGAGAAGGAGAAAAAAGAAGACAAGGACAAAGGTGGGAAGAAGAGAAAGTTATCTGGAAAGGATAAGTCCAATGATGTCAGCAAGCTGAAGCAAAAGCTTGAAAAGATCAATGGGAAAATAGAAACACTTCTTGAACAAAAGGCAGACATAGAAAAACAAATACGAGAAGCAGAAGATGAAGCAATTCCATGGTACATATATGACAACACTTATGTAGTGTCAACATATAAAATAGAACCAGAAAATGGTAAATGA

Protein sequence

>Msa0980880

QFTVPKEANKSTESSSLCTTQQIQLSFLHHNFGDNLEMEDKSTISLKIKTEDEKEGDVKEDKTELEVELKVKNKSAEKKKKHKDEKKSDDSKDIGEDGSENKHGDKEEKDKKKKEKKEKDDKSGTKKHKEKDRDEKTEKKEKVKSKENKDKDGVVAEDKKGKGDEGEDGKKEKKKDEKKKKKDKDEEIETKKDKGKEDVGEDSEKKEKSEKKEKDKKKHKDDDVVKSTGKGEEDDGEESKKKKKDKKEKEKDSGKTDDGEEKKDAKKKEKKDKGKGDEDDGEESKKKKKDKKEKEKDSGKTDDGEEKNDAKKKEKKDKGKGDEDDGEENKKKDEKKKEKDKDDKIKPKKESEKTDEGEAKKDKKKKEKKNKGEEEEGEKDEKKVTKKKEKKDDKDEVVSREIGGQKTEEKAEEDEEIDDGKEVKEKEKKEDKDKGGKKRKLSGKDKSNDVSKLKQKLEKINGKIETLLEQKADIEKQIREAEDEAIPWYIYDNTYVVSTYKIEPENGK*