AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028970 MtrunA17_Chr8g0382051 65.556 90 31 0 1 90 1 90 4.09e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028970 AT3G57360.1 50.000 90 37 3 1 90 1 82 1.08e-17 75.1

Find 82 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAGATCAGAAGATTTA+AGG 0.117924 7_1:+62227339 None:intergenic
CATTCCATTGATAAGTTATT+TGG 0.155844 7_1:-62227269 Msa1028970:three_prime_UTR
GAAGCTTTCTTGCACATAAT+TGG 0.174578 7_1:+62226431 None:intergenic
CAATTGTTCAATTACGATAT+TGG 0.215158 7_1:-62226272 Msa1028970:three_prime_UTR
ACAATCCTGTATTTGCATTC+TGG 0.217227 7_1:-62226503 Msa1028970:three_prime_UTR
GACAAGTACATGAGATAATT+TGG 0.229240 7_1:+62227164 None:intergenic
GATTTGGCACAGGTATCTTA+TGG 0.264509 7_1:-62227552 Msa1028970:three_prime_UTR
GTTTAAACCTCAACTGTAAA+AGG 0.266288 7_1:-62226400 Msa1028970:three_prime_UTR
AAAGTTGATGGTCGGAAGTT+TGG 0.269564 7_1:-62227464 Msa1028970:three_prime_UTR
CCTGGCCCAACTTGCAATTC+AGG 0.275772 7_1:-62228652 Msa1028970:intron
CAATCCTGTATTTGCATTCT+GGG 0.314898 7_1:-62226502 Msa1028970:three_prime_UTR
AAGAAACAAATTATTTAGTT+AGG 0.318302 7_1:-62227681 Msa1028970:three_prime_UTR
GATGCAAAATTAGCCGAAAA+AGG 0.329205 7_1:-62227637 Msa1028970:three_prime_UTR
TTCAAGATCAGAAGATTTAA+GGG 0.330837 7_1:+62227340 None:intergenic
CTTAAATCTTCTGATCTTGA+AGG 0.344176 7_1:-62227338 Msa1028970:three_prime_UTR
GTAGCTCTTGAGAGAAAATA+TGG 0.344246 7_1:-62226618 Msa1028970:three_prime_UTR
CAAGGTGGAAGTGGCGGTGT+TGG 0.350149 7_1:+62229707 None:intergenic
GAACTATGGAAGAAAAGGTT+TGG 0.353007 7_1:-62228772 Msa1028970:exon
ACCATTATCTAATAGATCTA+AGG 0.353230 7_1:+62227520 None:intergenic
GGAAGATAAACATCAAAATC+TGG 0.353821 7_1:+62227221 None:intergenic
AAGCAGACAATTAGTAGATA+TGG 0.368214 7_1:-62227306 Msa1028970:three_prime_UTR
AACTATGGAAGAAAAGGTTT+GGG 0.368802 7_1:-62228771 Msa1028970:exon
GACTTTCTAAACCTCTTGTT+TGG 0.373355 7_1:+62227200 None:intergenic
AAGGTGGAAGTGGCGGTGTT+GGG 0.403172 7_1:+62229708 None:intergenic
TTTCTCTATCTCTTCTCTCC+TGG 0.405905 7_1:-62229677 Msa1028970:intron
GCCTTAGATCTATTAGATAA+TGG 0.413209 7_1:-62227521 Msa1028970:three_prime_UTR
TTTGCGAGGTCACTGATAGA+AGG 0.426366 7_1:-62226578 Msa1028970:three_prime_UTR
CTTTACCTGAATTGCAAGTT+GGG 0.426982 7_1:+62228647 None:intergenic
GCTACAATGTCTGCATTAGA+TGG 0.433477 7_1:+62226636 None:intergenic
GTCGGAAGTTTGGATGTTGT+TGG 0.440117 7_1:-62227454 Msa1028970:three_prime_UTR
TTCGGCGGCATGGTGTTGCT+TGG 0.440523 7_1:-62227385 Msa1028970:three_prime_UTR
CATTCTGGGATGACATGAAA+AGG 0.444894 7_1:-62226488 Msa1028970:three_prime_UTR
AGTCTCTTGGCTACATAGTT+CGG 0.448906 7_1:-62227403 Msa1028970:three_prime_UTR
TGAAGCACACGTTGTGATCA+AGG 0.453286 7_1:+62226374 None:intergenic
CAAGATTTACACTTCAATTG+AGG 0.454593 7_1:-62227808 Msa1028970:CDS
GTCACCAAATAACTTATCAA+TGG 0.481135 7_1:+62227265 None:intergenic
CCTGAATTGCAAGTTGGGCC+AGG 0.481566 7_1:+62228652 None:intergenic
ACTTTACCTGAATTGCAAGT+TGG 0.486911 7_1:+62228646 None:intergenic
TCGGAAGTTTGGATGTTGTT+GGG 0.490686 7_1:-62227453 Msa1028970:three_prime_UTR
TGCAAGTTGGGCCAGGAAGT+TGG 0.490903 7_1:+62228659 None:intergenic
TTGCAAAATGCAAGTGATGA+TGG 0.492703 7_1:-62228701 Msa1028970:CDS
ATTATCTCATGTACTTGTCT+AGG 0.494765 7_1:-62227160 Msa1028970:intron
ATAGATTGAACAACATATGT+AGG 0.500909 7_1:+62226341 None:intergenic
TCATCCCAGAATGCAAATAC+AGG 0.506672 7_1:+62226498 None:intergenic
GGCAGATGGAATGAAGAGAT+GGG 0.508846 7_1:-62227894 Msa1028970:CDS
AAGCGACGGCAAGGTGGAAG+TGG 0.514314 7_1:+62229698 None:intergenic
AATTATGTGCAAGAAAGCTT+CGG 0.515213 7_1:-62226429 Msa1028970:three_prime_UTR
GCAGAAGTGTATGAAAAGAA+AGG 0.520348 7_1:-62227867 Msa1028970:CDS
GGCTACATAGTTCGGCGGCA+TGG 0.523179 7_1:-62227395 Msa1028970:three_prime_UTR
AGGCAGATGGAATGAAGAGA+TGG 0.524534 7_1:-62227895 Msa1028970:CDS
AGGTTTAGAAAGTCTTCTCC+TGG 0.525155 7_1:-62227191 Msa1028970:three_prime_UTR
TGGCGGTGTTGGGTCCTCTA+CGG 0.529110 7_1:+62229718 None:intergenic
GTGGCGGTGCTGTTTACAAA+GGG 0.532803 7_1:+62229799 None:intergenic
TATAGGCACCTCAAGTCTCT+TGG 0.537490 7_1:-62227416 Msa1028970:three_prime_UTR
CTACTAAAACGCCGCCGTAG+AGG 0.538981 7_1:-62229732 Msa1028970:five_prime_UTR
ATGTTTATCTTCCAAACAAG+AGG 0.541371 7_1:-62227211 Msa1028970:three_prime_UTR
TGGTAAAATTTCACAACAGA+AGG 0.558169 7_1:+62227744 None:intergenic
AGATAGAGAAAGCGACGGCA+AGG 0.558750 7_1:+62229689 None:intergenic
TGCAAGAAAGCTTCGGATGG+TGG 0.559741 7_1:-62226422 Msa1028970:three_prime_UTR
ACACAAAATCGAAAGGCAGA+TGG 0.564175 7_1:-62227908 Msa1028970:CDS
ATGAGATAATTTGGAATACC+AGG 0.565156 7_1:+62227173 None:intergenic
ACAACTGGAATAGTTCGTAA+TGG 0.568611 7_1:-62227831 Msa1028970:CDS
ATGGAATGAAGAGATGGGAA+TGG 0.574705 7_1:-62227889 Msa1028970:CDS
GGTGGCGGTGCTGTTTACAA+AGG 0.585258 7_1:+62229798 None:intergenic
CGACGGCAAGGTGGAAGTGG+CGG 0.594011 7_1:+62229701 None:intergenic
ATGTCTGCATTAGATGGAGG+AGG 0.597256 7_1:+62226642 None:intergenic
TAGATGTTCATCCTTGTCAA+AGG 0.597660 7_1:+62226542 None:intergenic
CATTCAATTGAAAATTTGCG+AGG 0.600948 7_1:-62226592 Msa1028970:three_prime_UTR
TCCAGGAACACAAAATCGAA+AGG 0.612133 7_1:-62227915 Msa1028970:intron
TAGAGAAAGCGACGGCAAGG+TGG 0.617648 7_1:+62229692 None:intergenic
AGAAGAGATAGAGAAAGCGA+CGG 0.619845 7_1:+62229684 None:intergenic
CTCTTGGCTACATAGTTCGG+CGG 0.631908 7_1:-62227400 Msa1028970:three_prime_UTR
TAAGTGAGAGAATGTGTTGG+TGG 0.633588 7_1:+62229780 None:intergenic
CTATGTAGCCAAGAGACTTG+AGG 0.654136 7_1:+62227408 None:intergenic
ACAATGTCTGCATTAGATGG+AGG 0.656582 7_1:+62226639 None:intergenic
ATATAAGTGAGAGAATGTGT+TGG 0.665180 7_1:+62229777 None:intergenic
GTGAGAGAATGTGTTGGTGG+CGG 0.665331 7_1:+62229783 None:intergenic
TATTGATGATAATGATGATG+AGG 0.665694 7_1:-62228729 Msa1028970:CDS
CGGTGTTGGGTCCTCTACGG+CGG 0.666626 7_1:+62229721 None:intergenic
ATGTGCAAGAAAGCTTCGGA+TGG 0.666807 7_1:-62226425 Msa1028970:three_prime_UTR
ATCAATGGAATGCTTGACTG+TGG 0.707373 7_1:+62227280 None:intergenic
GCTCTTGAGAGAAAATATGG+TGG 0.725754 7_1:-62226615 Msa1028970:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTTTTAATT+TGG - chr7_1:62227607-62227626 Msa1028970:three_prime_UTR 0.0%
!! AACTATTAAGAAATATTTAA+AGG - chr7_1:62226566-62226585 Msa1028970:three_prime_UTR 10.0%
!!! TTATTTTTTACTAAATTTAC+AGG - chr7_1:62227721-62227740 Msa1028970:three_prime_UTR 10.0%
!!! TATTTTTTACTAAATTTACA+GGG - chr7_1:62227722-62227741 Msa1028970:three_prime_UTR 10.0%
!! TCTTGTATTTAATAAAGTTA+AGG - chr7_1:62226472-62226491 Msa1028970:three_prime_UTR 15.0%
!! AAAACTAACATTTATTATGA+GGG + chr7_1:62226756-62226775 None:intergenic 15.0%
!! ATTCAACATTTATTTATGAT+TGG - chr7_1:62226962-62226981 Msa1028970:intron 15.0%
!!! ATGGTTGATATTTTTTTTTT+AGG - chr7_1:62227377-62227396 Msa1028970:three_prime_UTR 15.0%
!!! TTTTTTTTTTAGGAGAAAAA+TGG - chr7_1:62227387-62227406 Msa1028970:three_prime_UTR 15.0%
!!! GAGTTAATTTTAAGTTTAAA+CGG - chr7_1:62227474-62227493 Msa1028970:three_prime_UTR 15.0%
!!! TAAATAATTTAATTTAGTGC+TGG - chr7_1:62227786-62227805 Msa1028970:exon 15.0%
!! AAGAAACAAATTATTTAGTT+AGG - chr7_1:62228308-62228327 Msa1028970:intron 15.0%
!!! TTTTGGAAAATCTATTTAAT+CGG - chr7_1:62229297-62229316 Msa1028970:intron 15.0%
!! AATTGAAACATAATAACAGT+GGG - chr7_1:62226529-62226548 Msa1028970:three_prime_UTR 20.0%
!! TAATGAGTTAGATTTAAACT+TGG - chr7_1:62226590-62226609 Msa1028970:three_prime_UTR 20.0%
!! TATATGAATTAAATTGTGTC+AGG + chr7_1:62226631-62226650 None:intergenic 20.0%
!! TTTGTTTGATATTATACTCA+AGG - chr7_1:62226699-62226718 Msa1028970:intron 20.0%
!! CAAAACTAACATTTATTATG+AGG + chr7_1:62226757-62226776 None:intergenic 20.0%
!! TGTCTCTTTATAATAGAATT+AGG - chr7_1:62226802-62226821 Msa1028970:intron 20.0%
!!! AAATCATCTCTCTAAAAAAA+TGG - chr7_1:62227029-62227048 Msa1028970:intron 20.0%
!!! AATCATCTCTCTAAAAAAAT+GGG - chr7_1:62227030-62227049 Msa1028970:intron 20.0%
!! AATTGTTAACCAACAAAATA+GGG + chr7_1:62227129-62227148 None:intergenic 20.0%
!! TAATTGTTAACCAACAAAAT+AGG + chr7_1:62227130-62227149 None:intergenic 20.0%
!!! TATTTTGTTGGTTAACAATT+AGG - chr7_1:62227129-62227148 Msa1028970:intron 20.0%
!!! ATTTTGTTGGTTAACAATTA+GGG - chr7_1:62227130-62227149 Msa1028970:intron 20.0%
!!! ATGATGTGTATTTTTTTGTA+TGG - chr7_1:62227674-62227693 Msa1028970:three_prime_UTR 20.0%
!!! TTTTGTATGGATTTTTGTTT+AGG - chr7_1:62227687-62227706 Msa1028970:three_prime_UTR 20.0%
!! AGTAAAAAATAATCATAGAG+AGG + chr7_1:62227713-62227732 None:intergenic 20.0%
!!! AGAAGGTATATATAAAAAGA+TGG + chr7_1:62228231-62228250 None:intergenic 20.0%
!!! ATTATTACGAATTCCTTTTT+CGG + chr7_1:62228368-62228387 None:intergenic 20.0%
!! GAAATGTATAAAAAAGTTGA+TGG - chr7_1:62228513-62228532 Msa1028970:intron 20.0%
!! TCTTAATGAAAAGAAATGAA+AGG + chr7_1:62229109-62229128 None:intergenic 20.0%
!! AGTAAAAAATGAAAGAATGT+TGG + chr7_1:62229266-62229285 None:intergenic 20.0%
!!! AGGTTTAGGTTTTATTTCTT+TGG - chr7_1:62226406-62226425 Msa1028970:three_prime_UTR 25.0%
! CAATTGAAACATAATAACAG+TGG - chr7_1:62226528-62226547 Msa1028970:three_prime_UTR 25.0%
!!! GATTTTCTAAAATTCTTGTG+TGG + chr7_1:62227014-62227033 None:intergenic 25.0%
! GAGTTTAAACAAACAATGAA+AGG + chr7_1:62227102-62227121 None:intergenic 25.0%
!! TCAATGGATTTATGAAAAGT+TGG + chr7_1:62227171-62227190 None:intergenic 25.0%
!! GCTGTAATTTGAAATATCAA+TGG + chr7_1:62227187-62227206 None:intergenic 25.0%
!! ATTTTGAACTATGGAAGAAA+AGG - chr7_1:62227212-62227231 Msa1028970:three_prime_UTR 25.0%
!! TATTGATGATAATGATGATG+AGG - chr7_1:62227260-62227279 Msa1028970:three_prime_UTR 25.0%
! TTAAATAAGCCAATCCATAT+AGG - chr7_1:62227968-62227987 Msa1028970:intron 25.0%
! ATGAAAAGAAAGGAAAAATG+TGG - chr7_1:62228132-62228151 Msa1028970:intron 25.0%
! TGAAAAGAAAGGAAAAATGT+GGG - chr7_1:62228133-62228152 Msa1028970:intron 25.0%
!! CGTAATAATACATTTTTGCT+AGG - chr7_1:62228379-62228398 Msa1028970:intron 25.0%
!!! TAGGATAAAGTTTTGAAAAC+TGG - chr7_1:62228398-62228417 Msa1028970:intron 25.0%
!!! TGCATATGTGAATTTTGATT+TGG - chr7_1:62228421-62228440 Msa1028970:intron 25.0%
! ACCATTATCTAATAGATCTA+AGG + chr7_1:62228472-62228491 None:intergenic 25.0%
!!! TGTATAAAAAAGTTGATGGT+CGG - chr7_1:62228517-62228536 Msa1028970:intron 25.0%
! TTCAAGATCAGAAGATTTAA+GGG + chr7_1:62228652-62228671 None:intergenic 25.0%
! CATTCCATTGATAAGTTATT+TGG - chr7_1:62228720-62228739 Msa1028970:CDS 25.0%
! CACATAAATTACCATAGAAA+TGG + chr7_1:62229042-62229061 None:intergenic 25.0%
! AAATGCCTAATAATTACTCA+AGG + chr7_1:62229076-62229095 None:intergenic 25.0%
!! TGAGTAATTATTAGGCATTT+TGG - chr7_1:62229076-62229095 Msa1028970:intron 25.0%
!!! TTTACTCCTTTATCTTGTTT+TGG - chr7_1:62229280-62229299 Msa1028970:intron 25.0%
!! GATTTTCCAAAACAAGATAA+AGG + chr7_1:62229289-62229308 None:intergenic 25.0%
! ATAGATTGAACAACATATGT+AGG + chr7_1:62229651-62229670 None:intergenic 25.0%
! CAATTGTTCAATTACGATAT+TGG - chr7_1:62229717-62229736 Msa1028970:five_prime_UTR 25.0%
ATATAAGTGAGAGAATGTGT+TGG + chr7_1:62226215-62226234 None:intergenic 30.0%
TAACATTTATTATGAGGGCT+CGG + chr7_1:62226751-62226770 None:intergenic 30.0%
ACTACTTAGAGAAAAAGAGT+TGG - chr7_1:62226842-62226861 Msa1028970:intron 30.0%
TTGGTTAACAATTAGGGAAA+AGG - chr7_1:62227136-62227155 Msa1028970:intron 30.0%
TGGTTAACAATTAGGGAAAA+GGG - chr7_1:62227137-62227156 Msa1028970:intron 30.0%
!!! CAGCTTTTGATTTTGAACTA+TGG - chr7_1:62227203-62227222 Msa1028970:three_prime_UTR 30.0%
AACTATGGAAGAAAAGGTTT+GGG - chr7_1:62227218-62227237 Msa1028970:three_prime_UTR 30.0%
GGTAAAGTATGTTTGAACAA+TGG - chr7_1:62227358-62227377 Msa1028970:three_prime_UTR 30.0%
TACTAAATTTACAGGGACTT+AGG - chr7_1:62227729-62227748 Msa1028970:three_prime_UTR 30.0%
ACTAAATTTACAGGGACTTA+GGG - chr7_1:62227730-62227749 Msa1028970:three_prime_UTR 30.0%
CTTATTTCCATAAACTCTCT+AGG + chr7_1:62227870-62227889 None:intergenic 30.0%
! CAGAGATATTTTCAGTACTA+AGG + chr7_1:62227994-62228013 None:intergenic 30.0%
!!! TTTTTTGCATTTCATCTTCC+AGG - chr7_1:62228057-62228076 Msa1028970:intron 30.0%
CAAGATTTACACTTCAATTG+AGG - chr7_1:62228181-62228200 Msa1028970:intron 30.0%
TGGTAAAATTTCACAACAGA+AGG + chr7_1:62228248-62228267 None:intergenic 30.0%
! TGTTGTGAAATTTTACCAGT+AGG - chr7_1:62228250-62228269 Msa1028970:intron 30.0%
! GTTGTGAAATTTTACCAGTA+GGG - chr7_1:62228251-62228270 Msa1028970:intron 30.0%
GCCTTAGATCTATTAGATAA+TGG - chr7_1:62228468-62228487 Msa1028970:intron 30.0%
CTTCAAGATCAGAAGATTTA+AGG + chr7_1:62228653-62228672 None:intergenic 30.0%
CTTAAATCTTCTGATCTTGA+AGG - chr7_1:62228651-62228670 Msa1028970:intron 30.0%
AAGCAGACAATTAGTAGATA+TGG - chr7_1:62228683-62228702 Msa1028970:CDS 30.0%
GTCACCAAATAACTTATCAA+TGG + chr7_1:62228727-62228746 None:intergenic 30.0%
GGAAGATAAACATCAAAATC+TGG + chr7_1:62228771-62228790 None:intergenic 30.0%
ATGTTTATCTTCCAAACAAG+AGG - chr7_1:62228778-62228797 Msa1028970:exon 30.0%
! ATGAGATAATTTGGAATACC+AGG + chr7_1:62228819-62228838 None:intergenic 30.0%
GACAAGTACATGAGATAATT+TGG + chr7_1:62228828-62228847 None:intergenic 30.0%
ATTATCTCATGTACTTGTCT+AGG - chr7_1:62228829-62228848 Msa1028970:intron 30.0%
TAAATTGTAATTTCGTAGCG+TGG + chr7_1:62228986-62229005 None:intergenic 30.0%
! AGATACAATTGCCATTTCTA+TGG - chr7_1:62229028-62229047 Msa1028970:intron 30.0%
GACTTCCTTGAGTAATTATT+AGG - chr7_1:62229068-62229087 Msa1028970:intron 30.0%
! TTTTCATTAAGAGTGATGTG+TGG - chr7_1:62229117-62229136 Msa1028970:intron 30.0%
! ATGTGTGGAGTTTATCTTTT+TGG - chr7_1:62229132-62229151 Msa1028970:intron 30.0%
! TTTATCTTTTTGGACCACTT+TGG - chr7_1:62229142-62229161 Msa1028970:intron 30.0%
CATTGCATTTGTAATCTGTT+AGG - chr7_1:62229321-62229340 Msa1028970:intron 30.0%
CATTCAATTGAAAATTTGCG+AGG - chr7_1:62229397-62229416 Msa1028970:intron 30.0%
! AAGTTTCTTTTCCTTTGACA+AGG - chr7_1:62229436-62229455 Msa1028970:intron 30.0%
GGATTGTTACCAAAAATTCA+GGG + chr7_1:62229473-62229492 None:intergenic 30.0%
AGGATTGTTACCAAAAATTC+AGG + chr7_1:62229474-62229493 None:intergenic 30.0%
AATTATGTGCAAGAAAGCTT+CGG - chr7_1:62229560-62229579 Msa1028970:intron 30.0%
GTTTAAACCTCAACTGTAAA+AGG - chr7_1:62229589-62229608 Msa1028970:intron 30.0%
!!! AGTAGTTTTTTGTGGAAGCT+TGG + chr7_1:62226242-62226261 None:intergenic 35.0%
!! GGCGTTTTAGTAGTTTTTTG+TGG + chr7_1:62226250-62226269 None:intergenic 35.0%
! TCTTTGGAAGCTTTCAGAAT+AGG - chr7_1:62226422-62226441 Msa1028970:three_prime_UTR 35.0%
TGTTTCAATTGAACAACAGC+AGG + chr7_1:62226519-62226538 None:intergenic 35.0%
ATATAACTGACCCTATTGAG+TGG - chr7_1:62226646-62226665 Msa1028970:three_prime_UTR 35.0%
TATAACTGACCCTATTGAGT+GGG - chr7_1:62226647-62226666 Msa1028970:three_prime_UTR 35.0%
! AAGTCTTATCCCACTCAATA+GGG + chr7_1:62226659-62226678 None:intergenic 35.0%
! AAAGTCTTATCCCACTCAAT+AGG + chr7_1:62226660-62226679 None:intergenic 35.0%
AACATTTATTATGAGGGCTC+GGG + chr7_1:62226750-62226769 None:intergenic 35.0%
ACTTAGAGAAAAAGAGTTGG+AGG - chr7_1:62226845-62226864 Msa1028970:intron 35.0%
TTCTTGTGTGGTTTCACTAT+AGG + chr7_1:62227002-62227021 None:intergenic 35.0%
ACAAACAATGAAAGGAAGTG+AGG + chr7_1:62227094-62227113 None:intergenic 35.0%
! AACTCTGAACCCTATTTTGT+TGG - chr7_1:62227117-62227136 Msa1028970:intron 35.0%
GAACTATGGAAGAAAAGGTT+TGG - chr7_1:62227217-62227236 Msa1028970:three_prime_UTR 35.0%
TTGCAAAATGCAAGTGATGA+TGG - chr7_1:62227288-62227307 Msa1028970:three_prime_UTR 35.0%
CTTTACCTGAATTGCAAGTT+GGG + chr7_1:62227345-62227364 None:intergenic 35.0%
ACTTTACCTGAATTGCAAGT+TGG + chr7_1:62227346-62227365 None:intergenic 35.0%
! CACACAACTATAAGTTGAGA+AGG - chr7_1:62227444-62227463 Msa1028970:three_prime_UTR 35.0%
!! TGGAATCTTTAAAGTGTGTC+TGG - chr7_1:62227627-62227646 Msa1028970:three_prime_UTR 35.0%
!! GGAATCTTTAAAGTGTGTCT+GGG - chr7_1:62227628-62227647 Msa1028970:three_prime_UTR 35.0%
!! GAATCTTTAAAGTGTGTCTG+GGG - chr7_1:62227629-62227648 Msa1028970:three_prime_UTR 35.0%
CAAACATGCCTAAGTAACTA+AGG + chr7_1:62227764-62227783 None:intergenic 35.0%
CTTAGTTACTTAGGCATGTT+TGG - chr7_1:62227762-62227781 Msa1028970:three_prime_UTR 35.0%
AACCTATCCTAGAGAGTTTA+TGG - chr7_1:62227860-62227879 Msa1028970:CDS 35.0%
!! TTCCATAAACTCTCTAGGAT+AGG + chr7_1:62227865-62227884 None:intergenic 35.0%
AGACTGTTTGAAAGAGCTTA+AGG + chr7_1:62227921-62227940 None:intergenic 35.0%
TTTCAGTACTAAGGCCTATA+TGG + chr7_1:62227985-62228004 None:intergenic 35.0%
! GCAGAAGTGTATGAAAAGAA+AGG - chr7_1:62228122-62228141 Msa1028970:intron 35.0%
ACAACTGGAATAGTTCGTAA+TGG - chr7_1:62228158-62228177 Msa1028970:intron 35.0%
GATGCAAAATTAGCCGAAAA+AGG - chr7_1:62228352-62228371 Msa1028970:intron 35.0%
!!! TGTGAATTTTGATTTGGCAC+AGG - chr7_1:62228427-62228446 Msa1028970:intron 35.0%
GACTTTCTAAACCTCTTGTT+TGG + chr7_1:62228792-62228811 None:intergenic 35.0%
ATGAAAGAATGTTGGAGCTA+CGG + chr7_1:62229258-62229277 None:intergenic 35.0%
GTAGCTCTTGAGAGAAAATA+TGG - chr7_1:62229371-62229390 Msa1028970:intron 35.0%
TAGATGTTCATCCTTGTCAA+AGG + chr7_1:62229450-62229469 None:intergenic 35.0%
! GAACATCTACCCTGAATTTT+TGG - chr7_1:62229461-62229480 Msa1028970:intron 35.0%
ACAATCCTGTATTTGCATTC+TGG - chr7_1:62229486-62229505 Msa1028970:intron 35.0%
CAATCCTGTATTTGCATTCT+GGG - chr7_1:62229487-62229506 Msa1028970:intron 35.0%
GAAGCTTTCTTGCACATAAT+TGG + chr7_1:62229561-62229580 None:intergenic 35.0%
! AAGGATTCCTTTTACAGTTG+AGG + chr7_1:62229599-62229618 None:intergenic 35.0%
TAAGTGAGAGAATGTGTTGG+TGG + chr7_1:62226212-62226231 None:intergenic 40.0%
AGAAGAGATAGAGAAAGCGA+CGG + chr7_1:62226308-62226327 None:intergenic 40.0%
TTTCTCTATCTCTTCTCTCC+TGG - chr7_1:62226312-62226331 Msa1028970:three_prime_UTR 40.0%
GTACAAGACAGCGAAAAGAA+GGG + chr7_1:62226353-62226372 None:intergenic 40.0%
CTGTTGAAGACTCCTTCTTA+GGG + chr7_1:62226388-62226407 None:intergenic 40.0%
AAGGAGTCTTCAACAGGTTT+AGG - chr7_1:62226392-62226411 Msa1028970:three_prime_UTR 40.0%
GAGAAAAAGAGTTGGAGGTT+TGG - chr7_1:62226850-62226869 Msa1028970:intron 40.0%
! TTGGAGGTTTGGTTGAAACT+TGG - chr7_1:62226861-62226880 Msa1028970:intron 40.0%
CGGAAATTTCAGAAACGTGA+GGG + chr7_1:62227063-62227082 None:intergenic 40.0%
TCGGAAATTTCAGAAACGTG+AGG + chr7_1:62227064-62227083 None:intergenic 40.0%
AATGAAAGGAAGTGAGGAAC+GGG + chr7_1:62227088-62227107 None:intergenic 40.0%
CAATGAAAGGAAGTGAGGAA+CGG + chr7_1:62227089-62227108 None:intergenic 40.0%
! TTGACTTTTCACCAACTTCC+TGG - chr7_1:62227319-62227338 Msa1028970:three_prime_UTR 40.0%
GAAATGCTAACGAGTACTCT+TGG - chr7_1:62227500-62227519 Msa1028970:three_prime_UTR 40.0%
TCACCATGCCTTAGTTACTT+AGG - chr7_1:62227753-62227772 Msa1028970:three_prime_UTR 40.0%
ATGCCTAAGTAACTAAGGCA+TGG + chr7_1:62227759-62227778 None:intergenic 40.0%
GTACTAAGGCCTATATGGAT+TGG + chr7_1:62227980-62227999 None:intergenic 40.0%
CAATGCTAAAGTGAAGCGAA+GGG + chr7_1:62228020-62228039 None:intergenic 40.0%
ACAATGCTAAAGTGAAGCGA+AGG + chr7_1:62228021-62228040 None:intergenic 40.0%
TCCAGGAACACAAAATCGAA+AGG - chr7_1:62228074-62228093 Msa1028970:intron 40.0%
ACACAAAATCGAAAGGCAGA+TGG - chr7_1:62228081-62228100 Msa1028970:intron 40.0%
ATGGAATGAAGAGATGGGAA+TGG - chr7_1:62228100-62228119 Msa1028970:intron 40.0%
GGAAAAATGTGGGTAACAAC+TGG - chr7_1:62228143-62228162 Msa1028970:intron 40.0%
! GTACTGTGAATTTTCCCTAC+TGG + chr7_1:62228268-62228287 None:intergenic 40.0%
GATTTGGCACAGGTATCTTA+TGG - chr7_1:62228437-62228456 Msa1028970:intron 40.0%
!! AAAGTTGATGGTCGGAAGTT+TGG - chr7_1:62228525-62228544 Msa1028970:intron 40.0%
TCGGAAGTTTGGATGTTGTT+GGG - chr7_1:62228536-62228555 Msa1028970:intron 40.0%
! ATGTTGTTGGGAGCTTTTTG+AGG - chr7_1:62228548-62228567 Msa1028970:intron 40.0%
AGTCTCTTGGCTACATAGTT+CGG - chr7_1:62228586-62228605 Msa1028970:intron 40.0%
ATCAATGGAATGCTTGACTG+TGG + chr7_1:62228712-62228731 None:intergenic 40.0%
AGGTTTAGAAAGTCTTCTCC+TGG - chr7_1:62228798-62228817 Msa1028970:intron 40.0%
TGCACATAATGTGTCCAAAG+TGG + chr7_1:62229159-62229178 None:intergenic 40.0%
AAACGACTGAAAAATCAGCG+TGG + chr7_1:62229210-62229229 None:intergenic 40.0%
ACAATGTCTGCATTAGATGG+AGG + chr7_1:62229353-62229372 None:intergenic 40.0%
GCTACAATGTCTGCATTAGA+TGG + chr7_1:62229356-62229375 None:intergenic 40.0%
GCTCTTGAGAGAAAATATGG+TGG - chr7_1:62229374-62229393 Msa1028970:intron 40.0%
TCATCCCAGAATGCAAATAC+AGG + chr7_1:62229494-62229513 None:intergenic 40.0%
!! CATTCTGGGATGACATGAAA+AGG - chr7_1:62229501-62229520 Msa1028970:intron 40.0%
GGGTTACAAGAGAACTAACC+AGG + chr7_1:62226333-62226352 None:intergenic 45.0%
CGTACAAGACAGCGAAAAGA+AGG + chr7_1:62226354-62226373 None:intergenic 45.0%
GTTCAACACGAACCCTAAGA+AGG - chr7_1:62226373-62226392 Msa1028970:three_prime_UTR 45.0%
CCTGTTGAAGACTCCTTCTT+AGG + chr7_1:62226389-62226408 None:intergenic 45.0%
CCTAAGAAGGAGTCTTCAAC+AGG - chr7_1:62226386-62226405 Msa1028970:three_prime_UTR 45.0%
! GCCTTTCGATTTTGTGTTCC+TGG + chr7_1:62228078-62228097 None:intergenic 45.0%
AGGCAGATGGAATGAAGAGA+TGG - chr7_1:62228094-62228113 Msa1028970:intron 45.0%
GGCAGATGGAATGAAGAGAT+GGG - chr7_1:62228095-62228114 Msa1028970:intron 45.0%
GTCGGAAGTTTGGATGTTGT+TGG - chr7_1:62228535-62228554 Msa1028970:intron 45.0%
!!! GGGAGCTTTTTGAGGCTTAT+AGG - chr7_1:62228556-62228575 Msa1028970:intron 45.0%
TATAGGCACCTCAAGTCTCT+TGG - chr7_1:62228573-62228592 Msa1028970:intron 45.0%
CTATGTAGCCAAGAGACTTG+AGG + chr7_1:62228584-62228603 None:intergenic 45.0%
ATGTCTGCATTAGATGGAGG+AGG + chr7_1:62229350-62229369 None:intergenic 45.0%
TTTGCGAGGTCACTGATAGA+AGG - chr7_1:62229411-62229430 Msa1028970:intron 45.0%
ATGTGCAAGAAAGCTTCGGA+TGG - chr7_1:62229564-62229583 Msa1028970:intron 45.0%
TGAAGCACACGTTGTGATCA+AGG + chr7_1:62229618-62229637 None:intergenic 45.0%
!! ATTAAAACTTATATTATTTA+AGG + chr7_1:62227541-62227560 None:intergenic 5.0%
! GTGAGAGAATGTGTTGGTGG+CGG + chr7_1:62226209-62226228 None:intergenic 50.0%
AGATAGAGAAAGCGACGGCA+AGG + chr7_1:62226303-62226322 None:intergenic 50.0%
! AAGGAAGTGAGGAACGGGTT+CGG + chr7_1:62227083-62227102 None:intergenic 50.0%
TGCTAAAGTGAAGCGAAGGG+AGG + chr7_1:62228017-62228036 None:intergenic 50.0%
CTCTTGGCTACATAGTTCGG+CGG - chr7_1:62228589-62228608 Msa1028970:intron 50.0%
TGCAAGAAAGCTTCGGATGG+TGG - chr7_1:62229567-62229586 Msa1028970:intron 50.0%
CTACTAAAACGCCGCCGTAG+AGG - chr7_1:62226257-62226276 Msa1028970:three_prime_UTR 55.0%
AAGGTGGAAGTGGCGGTGTT+GGG + chr7_1:62226284-62226303 None:intergenic 55.0%
TAGAGAAAGCGACGGCAAGG+TGG + chr7_1:62226300-62226319 None:intergenic 55.0%
! TGCAAGTTGGGCCAGGAAGT+TGG + chr7_1:62227333-62227352 None:intergenic 55.0%
! CCTGAATTGCAAGTTGGGCC+AGG + chr7_1:62227340-62227359 None:intergenic 55.0%
CCTGGCCCAACTTGCAATTC+AGG - chr7_1:62227337-62227356 Msa1028970:three_prime_UTR 55.0%
! TGGCGGTGTTGGGTCCTCTA+CGG + chr7_1:62226274-62226293 None:intergenic 60.0%
CAAGGTGGAAGTGGCGGTGT+TGG + chr7_1:62226285-62226304 None:intergenic 60.0%
AAGCGACGGCAAGGTGGAAG+TGG + chr7_1:62226294-62226313 None:intergenic 60.0%
GGCTACATAGTTCGGCGGCA+TGG - chr7_1:62228594-62228613 Msa1028970:intron 60.0%
!! TTCGGCGGCATGGTGTTGCT+TGG - chr7_1:62228604-62228623 Msa1028970:intron 60.0%
! CGGTGTTGGGTCCTCTACGG+CGG + chr7_1:62226271-62226290 None:intergenic 65.0%
CGACGGCAAGGTGGAAGTGG+CGG + chr7_1:62226291-62226310 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62226193 62229818 62226193 ID=Msa1028970;Name=Msa1028970
chr7_1 mRNA 62226193 62229818 62226193 ID=Msa1028970-mRNA-1;Parent=Msa1028970;Name=Msa1028970-mRNA-1;_AED=0.25;_eAED=0.25;_QI=157|1|1|1|0.66|0.25|4|1112|90
chr7_1 exon 62226193 62226668 62226193 ID=Msa1028970-mRNA-1:exon:13273;Parent=Msa1028970-mRNA-1
chr7_1 exon 62227161 62227932 62227161 ID=Msa1028970-mRNA-1:exon:13272;Parent=Msa1028970-mRNA-1
chr7_1 exon 62228653 62228805 62228653 ID=Msa1028970-mRNA-1:exon:13271;Parent=Msa1028970-mRNA-1
chr7_1 exon 62229678 62229818 62229678 ID=Msa1028970-mRNA-1:exon:13270;Parent=Msa1028970-mRNA-1
chr7_1 five_prime_UTR 62229678 62229818 62229678 ID=Msa1028970-mRNA-1:five_prime_utr;Parent=Msa1028970-mRNA-1
chr7_1 five_prime_UTR 62228790 62228805 62228790 ID=Msa1028970-mRNA-1:five_prime_utr;Parent=Msa1028970-mRNA-1
chr7_1 CDS 62228653 62228789 62228653 ID=Msa1028970-mRNA-1:cds;Parent=Msa1028970-mRNA-1
chr7_1 CDS 62227797 62227932 62227797 ID=Msa1028970-mRNA-1:cds;Parent=Msa1028970-mRNA-1
chr7_1 three_prime_UTR 62227161 62227796 62227161 ID=Msa1028970-mRNA-1:three_prime_utr;Parent=Msa1028970-mRNA-1
chr7_1 three_prime_UTR 62226193 62226668 62226193 ID=Msa1028970-mRNA-1:three_prime_utr;Parent=Msa1028970-mRNA-1
Gene Sequence

>Msa1028970

ATGGAAGAAAAGGTTTGGGAATGTTCTTTAAATGAAGATATTGATGATAATGATGATGAGGTCTATTTGCAAAATGCAAGTGATGATGGACAAGACTTTGACTTTTCACCAACTTCCTGGCCCAACTTGCAATTCAGGAACACAAAATCGAAAGGCAGATGGAATGAAGAGATGGGAATGGCAGAAGTGTATGAAAAGAAAGGAAAAATGTGGGTAACAACTGGAATAGTTCGTAATGGCAAGATTTACACTTCAATTGAGGAAACTTTGTAA

Protein sequence

>Msa1028970

MEEKVWECSLNEDIDDNDDEVYLQNASDDGQDFDFSPTSWPNLQFRNTKSKGRWNEEMGMAEVYEKKGKMWVTTGIVRNGKIYTSIEETL*