AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548150 MtrunA17_Chr4g0024631 98.034 407 3 1 1 402 1 407 0.0 823
Msa0548150 MtrunA17_Chr2g0322591 78.818 406 78 2 1 402 1 402 0.0 670
Msa0548150 MtrunA17_Chr3g0115251 62.183 394 135 4 15 402 9 394 4.08e-180 506
Msa0548150 MtrunA17_Chr4g0004991 71.479 284 76 1 124 402 11 294 3.88e-158 447
Msa0548150 MtrunA17_Chr4g0017871 63.415 246 85 1 162 402 4 249 3.22e-123 356
Msa0548150 MtrunA17_Chr5g0396961 46.863 271 134 4 98 367 80 341 1.31e-80 251
Msa0548150 MtrunA17_Chr3g0126221 48.327 269 129 5 98 365 80 339 8.08e-79 246
Msa0548150 MtrunA17_Chr1g0149521 44.015 259 134 5 96 353 85 333 1.26e-66 215
Msa0548150 MtrunA17_Chr8g0360581 35.632 261 156 6 132 389 77 328 3.41e-50 172
Msa0548150 MtrunA17_Chr2g0316241 35.798 257 153 6 135 388 74 321 1.74e-49 170
Msa0548150 MtrunA17_Chr4g0017861 36.601 153 76 5 16 165 17 151 1.77e-20 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548150 AT1G05170.2 75.430 407 95 1 1 402 1 407 0.0 664
Msa0548150 AT2G32430.1 73.350 409 102 3 1 402 1 409 0.0 619
Msa0548150 AT4G26940.1 71.788 397 105 2 10 402 14 407 0.0 590
Msa0548150 AT1G05170.1 73.938 353 92 0 1 353 1 353 0.0 573
Msa0548150 AT1G11730.1 59.658 409 131 6 1 401 1 383 7.28e-180 506
Msa0548150 AT1G32930.1 59.057 403 151 5 6 402 5 399 1.58e-173 490
Msa0548150 AT1G77810.2 58.438 397 136 6 11 399 6 381 1.08e-167 475
Msa0548150 AT1G77810.1 58.000 400 136 7 11 399 6 384 1.96e-165 469
Msa0548150 AT1G33430.1 57.576 396 150 7 16 402 7 393 7.96e-155 442
Msa0548150 AT1G33430.2 56.436 404 150 8 16 402 7 401 1.70e-151 434
Msa0548150 AT1G22015.1 52.381 399 165 5 15 402 11 395 1.32e-146 422
Msa0548150 AT4G26940.2 66.052 271 89 1 10 280 14 281 3.38e-124 361
Msa0548150 AT1G33430.3 56.913 311 121 6 16 322 7 308 7.74e-111 327
Msa0548150 AT5G53340.1 46.097 269 135 5 98 365 76 335 3.03e-78 245
Msa0548150 AT5G53340.2 46.360 261 132 4 98 357 76 329 3.36e-77 243
Msa0548150 AT4G32120.1 45.946 259 128 6 96 353 85 332 1.21e-68 221
Msa0548150 AT2G25300.2 43.629 259 134 5 96 353 8 255 2.89e-67 214
Msa0548150 AT2G25300.1 44.094 254 128 5 101 353 93 333 3.79e-66 214
Msa0548150 AT2G26100.1 37.066 259 147 7 135 388 107 354 3.87e-51 176
Msa0548150 AT3G14960.1 33.984 256 157 6 135 387 81 327 4.72e-48 167
Msa0548150 AT1G53290.1 34.884 258 156 6 135 389 83 331 4.80e-48 167
Msa0548150 AT2G26100.2 37.662 231 135 5 135 361 107 332 3.32e-46 162

Find 132 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGGCTTTGTTTCTTTC+TGG 0.057126 4_1:-41878729 None:intergenic
CCTAATAAATTGATATAATT+TGG 0.146827 4_1:+41879010 Msa0548150:three_prime_UTR
CCAAATTATATCAATTTATT+AGG 0.169156 4_1:-41879010 None:intergenic
TCAATAGGAGCTTGGTTTAT+TGG 0.210268 4_1:+41878065 Msa0548150:CDS
TTGCCACTGCTGTGACCTTA+TGG 0.254042 4_1:+41877325 Msa0548150:CDS
ACACATAAATAATCAATTAT+TGG 0.257213 4_1:-41879057 None:intergenic
GTGTAGCTTGTTTGCAAGTA+TGG 0.265759 4_1:-41874569 None:intergenic
CATTGGAAGTTTGGCGAGTC+TGG 0.279395 4_1:+41877830 Msa0548150:CDS
ACTTCAATATGCAAAATAAC+TGG 0.284348 4_1:-41874774 None:intergenic
TTCTTCTCATCTCAAGAATA+AGG 0.285493 4_1:+41874725 Msa0548150:five_prime_UTR
GTATGCTATTTCCAATGATT+TGG 0.294141 4_1:+41877886 Msa0548150:CDS
TTTATGGAGTGCTTCTTTCT+AGG 0.298948 4_1:+41878657 Msa0548150:CDS
GAGAAGGTGAAAATGCTTTA+TGG 0.301896 4_1:+41878641 Msa0548150:CDS
GAACCCGAGCATTGGAAGTT+TGG 0.312071 4_1:+41877821 Msa0548150:CDS
TCCAATTTAGTTACAAGATC+TGG 0.320538 4_1:+41876118 Msa0548150:intron
GGAACTATTAACAAACAAAA+TGG 0.326167 4_1:-41878968 None:intergenic
TGGAGTATTCCTGAACAAAA+TGG 0.340829 4_1:+41875924 Msa0548150:CDS
GAAGTGTAATATCTCAGAAA+TGG 0.343150 4_1:+41874880 Msa0548150:CDS
ATTGTCATGCGCTTTGTAAT+TGG 0.344864 4_1:+41876661 Msa0548150:CDS
ACTTCCAATGCTCGGGTTCA+TGG 0.351453 4_1:-41877817 None:intergenic
TGCCACTGCTGTGACCTTAT+GGG 0.354535 4_1:+41877326 Msa0548150:CDS
CTCCTGTTTCAGAAGATATA+AGG 0.357539 4_1:+41876380 Msa0548150:CDS
CTGGAATGCTCTTCACTAAC+AGG 0.360031 4_1:+41874934 Msa0548150:CDS
TTGTCTTTGCTGACAATTCA+AGG 0.362315 4_1:-41877293 None:intergenic
TTTGTGTTGCTTCATTTGAT+TGG 0.363073 4_1:+41878560 Msa0548150:CDS
GAAAAGAAGGGACTCGGTTC+GGG 0.366676 4_1:+41876471 Msa0548150:CDS
GGTAATAATCTTCCTGAGTT+AGG 0.368466 4_1:-41878703 None:intergenic
AAGAAGCTAGAGGAAGAAAA+AGG 0.375991 4_1:+41876637 Msa0548150:CDS
ATATTTCTCTCTATATATAC+TGG 0.381326 4_1:-41878786 None:intergenic
TACATTGGATGCATGAAATC+TGG 0.384729 4_1:+41877685 Msa0548150:CDS
GTCCTTATATCTTCTGAAAC+AGG 0.385267 4_1:-41876382 None:intergenic
GGAAAAGAAGGGACTCGGTT+CGG 0.389458 4_1:+41876470 Msa0548150:CDS
AGACCGACAGCTTCAGAAAC+TGG 0.394152 4_1:+41875954 Msa0548150:CDS
TATGTATGTTGCCAAATCAT+TGG 0.411417 4_1:-41877897 None:intergenic
GACGATGTTCATGTAAATAT+AGG 0.415818 4_1:+41877375 Msa0548150:CDS
TATTATTAAAACACTAATAG+TGG 0.418810 4_1:-41874646 None:intergenic
TCTATTCTTTGTTGCTTGAA+AGG 0.423223 4_1:+41878944 Msa0548150:three_prime_UTR
CTGCTTCAATAGCTCTATCT+AGG 0.425000 4_1:-41877053 None:intergenic
CTATTCTTTGTTGCTTGAAA+GGG 0.429201 4_1:+41878945 Msa0548150:three_prime_UTR
CTATGTGAGTTGTGTTGTGT+TGG 0.439564 4_1:-41874594 None:intergenic
GTACATAGAAGGTGTGGAGA+AGG 0.442264 4_1:+41878625 Msa0548150:CDS
GGAGCTGCAGTGGAATTTGT+AGG 0.445573 4_1:+41878581 Msa0548150:CDS
TATGTATGGTGAAGATTTCA+AGG 0.447691 4_1:+41876163 Msa0548150:CDS
ATCTCTTCTTAAAATGTAGA+AGG 0.449785 4_1:-41878871 None:intergenic
TTAATACTGCCTTTAGCAGC+AGG 0.450178 4_1:+41876449 Msa0548150:CDS
TTTATGCAGAATCATGTTGA+AGG 0.456059 4_1:+41877267 Msa0548150:intron
TCCTATTGACACATCCTCAT+TGG 0.456204 4_1:-41878051 None:intergenic
AATAATCAATTATTGGCAAA+AGG 0.465631 4_1:-41879050 None:intergenic
TACTTTGTTGCAGAGGGGTA+AGG 0.467767 4_1:+41877792 Msa0548150:intron
GGATTAAAGAAGTACATAGA+AGG 0.469286 4_1:+41878614 Msa0548150:CDS
GAATTTGTAGGTCCGCTGAT+AGG 0.469957 4_1:+41878593 Msa0548150:CDS
CTCGCCAAACTTCCAATGCT+CGG 0.470366 4_1:-41877825 None:intergenic
CCTTTAGCAGCAGGAAAAGA+AGG 0.471407 4_1:+41876458 Msa0548150:CDS
AAGTGTAATATCTCAGAAAT+GGG 0.475589 4_1:+41874881 Msa0548150:CDS
AGAATGAAGAAAGAAGAGAA+TGG 0.475983 4_1:-41874693 None:intergenic
GGGCAAGAGAAAGTACCTTA+TGG 0.476193 4_1:+41876417 Msa0548150:CDS
CTGTATTGAATGTAGAGCTT+TGG 0.481497 4_1:+41876285 Msa0548150:intron
GAATGAAGAAAGAAGAGAAT+GGG 0.482276 4_1:-41874692 None:intergenic
TCATGGTTTGCAGCTAGATA+AGG 0.483793 4_1:+41878897 Msa0548150:three_prime_UTR
TATGTGAGTTGTGTTGTGTT+GGG 0.485451 4_1:-41874593 None:intergenic
GGCTTTGTTTCTTTCTGGAG+TGG 0.486213 4_1:-41878724 None:intergenic
GCTTGTTTGCAAGTATGGTA+AGG 0.487081 4_1:-41874564 None:intergenic
ATAATTGATTATTTATGTGT+TGG 0.487550 4_1:+41879060 Msa0548150:three_prime_UTR
GCATGGAGATTTCTTGAGGC+TGG 0.488147 4_1:+41877086 Msa0548150:CDS
TGTCTCGGTAGTTTCTGTGC+TGG 0.488168 4_1:+41874915 Msa0548150:CDS
TTGTTTGTTAATAGTTCCAA+TGG 0.493333 4_1:+41878973 Msa0548150:three_prime_UTR
CTTAAAATGTAGAAGGTCCA+TGG 0.495200 4_1:-41878864 None:intergenic
GCCAATGAGGATGTGTCAAT+AGG 0.497688 4_1:+41878050 Msa0548150:CDS
TTCAAATTTAGAGATGGACT+TGG 0.502922 4_1:+41876318 Msa0548150:CDS
AATAAATTGATATAATTTGG+TGG 0.503156 4_1:+41879013 Msa0548150:three_prime_UTR
TCGCCAAACTTCCAATGCTC+GGG 0.504026 4_1:-41877824 None:intergenic
GGAGCTTGATAGCTAGCCAT+TGG 0.506135 4_1:-41878989 None:intergenic
GGGACTCGGTTCGGGCTACC+TGG 0.512421 4_1:+41876479 Msa0548150:CDS
TATTAATACCTACGACCATA+AGG 0.514517 4_1:-41876432 None:intergenic
GATGGACTTGGCTGCTGCGA+GGG 0.515443 4_1:+41876330 Msa0548150:CDS
AAGTACTTCCGCCATGCCAC+AGG 0.515451 4_1:+41877857 Msa0548150:CDS
TGTATCTTAGTAATTCCCCT+AGG 0.517860 4_1:+41879116 Msa0548150:three_prime_UTR
GACTATTTCAAATTTAGAGA+TGG 0.518519 4_1:+41876312 Msa0548150:CDS
TGCGAATGGAAGGCGCAAGC+AGG 0.529852 4_1:+41878532 Msa0548150:CDS
GGTTTCAGATTGCGAATGGA+AGG 0.531340 4_1:+41878522 Msa0548150:intron
GTATCTTAGTAATTCCCCTA+GGG 0.535039 4_1:+41879117 Msa0548150:three_prime_UTR
TCAATTATTGGCAAAAGGAA+AGG 0.536443 4_1:-41879045 None:intergenic
CAGCAGGAAAAGAAGGGACT+CGG 0.538952 4_1:+41876465 Msa0548150:CDS
TATAAGGACGACTGAGTCGA+CGG 0.542612 4_1:+41876396 Msa0548150:CDS
TGATGAGTTCTTCCTAACTC+AGG 0.542722 4_1:+41878691 Msa0548150:three_prime_UTR
TCATTTGATTGGAGCTGCAG+TGG 0.544715 4_1:+41878571 Msa0548150:CDS
GGTACCATGAACCCGAGCAT+TGG 0.545810 4_1:+41877813 Msa0548150:CDS
TCAAAACAACGGATATACAT+TGG 0.552136 4_1:+41877670 Msa0548150:CDS
CTTCAATATGCAAAATAACT+GGG 0.553629 4_1:-41874773 None:intergenic
GTTTGGTTTCAGATTGCGAA+TGG 0.555425 4_1:+41878518 Msa0548150:intron
CGGGCTACCTGGTTGCCACA+AGG 0.556849 4_1:+41876490 Msa0548150:CDS
AGGATGTGTCAATAGGAGCT+TGG 0.557584 4_1:+41878057 Msa0548150:CDS
CATTGGGAGAAACTCTCGTT+AGG 0.559599 4_1:+41877641 Msa0548150:CDS
CGCGAAACTAGAGATATGTA+TGG 0.560067 4_1:+41876149 Msa0548150:CDS
CTTGTTTGCAAGTATGGTAA+GGG 0.569379 4_1:-41874563 None:intergenic
TTACCAGTTTCTGAAGCTGT+CGG 0.571354 4_1:-41875957 None:intergenic
AGTTACAAGATCTGGAAATG+AGG 0.572395 4_1:+41876126 Msa0548150:intron
ATAGCATAAGATATAAGCTA+AGG 0.576272 4_1:+41874617 Msa0548150:five_prime_UTR
TAAATTGAATGTAGTTTCCG+AGG 0.576758 4_1:+41875977 Msa0548150:CDS
AAGAGAGAATGCTTGCTCCA+TGG 0.578870 4_1:+41878847 Msa0548150:three_prime_UTR
AGATAGAGCTATTGAAGCAG+AGG 0.580020 4_1:+41877056 Msa0548150:CDS
TTATGAACCTTGTGGCAACC+AGG 0.580745 4_1:-41876497 None:intergenic
CATACAACTGCCCTGTGGCA+TGG 0.582197 4_1:-41877868 None:intergenic
TTAATGACGTGGAAAAGTAG+AGG 0.584574 4_1:+41874843 Msa0548150:exon
CTTTAGCAGCAGGAAAAGAA+GGG 0.584908 4_1:+41876459 Msa0548150:CDS
AAAGAAGTACATAGAAGGTG+TGG 0.587665 4_1:+41878619 Msa0548150:CDS
GAAGCAGAGGACAGAAAGCA+TGG 0.588213 4_1:+41877069 Msa0548150:CDS
TACTTCTTTAATCCTATCAG+CGG 0.588432 4_1:-41878605 None:intergenic
GCAAGTATGGTAAGGGACGT+TGG 0.590601 4_1:-41874556 None:intergenic
AAATTGAATGTAGTTTCCGA+GGG 0.596196 4_1:+41875978 Msa0548150:CDS
AGTTAGGAAGAACTCATCAA+AGG 0.596741 4_1:-41878687 None:intergenic
TTAACTAGTGCTACATCAGG+AGG 0.603990 4_1:+41877027 Msa0548150:intron
GATCAGAAGTGTCAATGCTA+CGG 0.605562 4_1:-41879184 None:intergenic
AGAAAGTACCTTATGGTCGT+AGG 0.607267 4_1:+41876424 Msa0548150:CDS
ATCCCATAAGGTCACAGCAG+TGG 0.610258 4_1:-41877328 None:intergenic
GAAAGCATGGAGATTTCTTG+AGG 0.614966 4_1:+41877082 Msa0548150:CDS
TTGGTTTATTGGACTTGACG+TGG 0.621784 4_1:+41878076 Msa0548150:CDS
AGATGGACTTGGCTGCTGCG+AGG 0.622009 4_1:+41876329 Msa0548150:CDS
TGCGCTTTGTAATTGGACAC+AGG 0.622431 4_1:+41876668 Msa0548150:CDS
AGAATGGGTTGAGAAGAAGA+TGG 0.627446 4_1:-41874677 None:intergenic
ATAAGGACGACTGAGTCGAC+GGG 0.634555 4_1:+41876397 Msa0548150:CDS
TCTTCATAAGTATGCCAATG+AGG 0.641650 4_1:+41878037 Msa0548150:CDS
ATGTATGGTGAAGATTTCAA+GGG 0.663955 4_1:+41876164 Msa0548150:CDS
AAATTGTTACGAAGTAGAGT+CGG 0.664201 4_1:-41879150 None:intergenic
AGTACTTCCGCCATGCCACA+GGG 0.672475 4_1:+41877858 Msa0548150:CDS
ATGGGTTGAGAAGAAGATGG+TGG 0.676621 4_1:-41874674 None:intergenic
GTTCAAGAGTCAGTACGAAG+TGG 0.682952 4_1:+41876355 Msa0548150:CDS
GGACAAAAGAAAGAAGCTAG+AGG 0.691737 4_1:+41876627 Msa0548150:CDS
TATCTTAGTAATTCCCCTAG+GGG 0.695288 4_1:+41879118 Msa0548150:three_prime_UTR
ACAACTGCCCTGTGGCATGG+CGG 0.712956 4_1:-41877865 None:intergenic
TTAGGCATCGATCAAAACAA+CGG 0.738736 4_1:+41877659 Msa0548150:CDS
AATAGCATACAACTGCCCTG+TGG 0.772018 4_1:-41877873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAGTAAAACTTTTTTAA+TGG + chr4_1:41875705-41875724 Msa0548150:intron 10.0%
!! CATAGAAAAATAATAATAAT+TGG - chr4_1:41876246-41876265 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAAGAA+TGG + chr4_1:41876927-41876946 Msa0548150:intron 10.0%
!!! ATACATATTTTTTTAAAAAC+CGG - chr4_1:41877241-41877260 None:intergenic 10.0%
!! ATTTACATTATTATATTGTT+GGG - chr4_1:41877487-41877506 None:intergenic 10.0%
!! TATTTACATTATTATATTGT+TGG - chr4_1:41877488-41877507 None:intergenic 10.0%
!! TATTATTAAAACACTAATAG+TGG - chr4_1:41874649-41874668 None:intergenic 15.0%
!!! AATTAGTGATTTTTTTTTTG+AGG + chr4_1:41875018-41875037 Msa0548150:intron 15.0%
!!! ATTAGTGATTTTTTTTTTGA+GGG + chr4_1:41875019-41875038 Msa0548150:intron 15.0%
!! TAATTACTGTTTATGTTAAT+TGG + chr4_1:41875311-41875330 Msa0548150:intron 15.0%
!!! TTTTTAAAGAAAAGCTTTTA+AGG - chr4_1:41875393-41875412 None:intergenic 15.0%
!!! AAAGCTTTTCTTTAAAAAAT+TGG + chr4_1:41875395-41875414 Msa0548150:intron 15.0%
!!! AAGCTTTTCTTTAAAAAATT+GGG + chr4_1:41875396-41875415 Msa0548150:intron 15.0%
!!! TTTTTTTTTTTTATCAAGCA+AGG - chr4_1:41876040-41876059 None:intergenic 15.0%
!!! AATTTATTCTTTTATGTAGT+AGG - chr4_1:41877940-41877959 None:intergenic 15.0%
!! CCAAATTATATCAATTTATT+AGG - chr4_1:41879013-41879032 None:intergenic 15.0%
!! CCTAATAAATTGATATAATT+TGG + chr4_1:41879010-41879029 Msa0548150:three_prime_UTR 15.0%
!! AATAAATTGATATAATTTGG+TGG + chr4_1:41879013-41879032 Msa0548150:three_prime_UTR 15.0%
!! ACACATAAATAATCAATTAT+TGG - chr4_1:41879060-41879079 None:intergenic 15.0%
!! ATAATTGATTATTTATGTGT+TGG + chr4_1:41879060-41879079 Msa0548150:three_prime_UTR 15.0%
!! TAAAAAAAGAATTAATGACG+TGG + chr4_1:41874832-41874851 Msa0548150:exon 20.0%
!!! TTCTTTAAAAAATTGGGAAA+AGG + chr4_1:41875402-41875421 Msa0548150:intron 20.0%
!!! TCTTTAAAAAATTGGGAAAA+GGG + chr4_1:41875403-41875422 Msa0548150:intron 20.0%
!! ATAACTGAAATTCATTTCTA+AGG - chr4_1:41875534-41875553 None:intergenic 20.0%
!! TATATGTATCATTTAGTAGT+AGG + chr4_1:41875664-41875683 Msa0548150:intron 20.0%
!! TAACTATTGAACATATTGTT+TGG + chr4_1:41875836-41875855 Msa0548150:intron 20.0%
!! AACTATTGAACATATTGTTT+GGG + chr4_1:41875837-41875856 Msa0548150:intron 20.0%
!! AGAAATGTTAATATCATAAC+AGG + chr4_1:41875898-41875917 Msa0548150:intron 20.0%
!!! GATTTTTTCTTTTGATAACA+TGG + chr4_1:41876596-41876615 Msa0548150:intron 20.0%
!!! TTTTGATAACATGGATAATA+GGG + chr4_1:41876605-41876624 Msa0548150:intron 20.0%
!! TAATCATAACTCAACTATAT+CGG + chr4_1:41876892-41876911 Msa0548150:intron 20.0%
!! GAAATAGTAATGAAACAAAA+AGG - chr4_1:41877128-41877147 None:intergenic 20.0%
!! AAATACTTTCTATTGTGAAT+TGG + chr4_1:41877731-41877750 Msa0548150:intron 20.0%
!! AATACTTTCTATTGTGAATT+GGG + chr4_1:41877732-41877751 Msa0548150:intron 20.0%
!! ATTAAACATAACCAAATCAA+TGG + chr4_1:41877960-41877979 Msa0548150:intron 20.0%
!! TTAAATTGTTTATCCAAACA+TGG + chr4_1:41878418-41878437 Msa0548150:intron 20.0%
!!! CAATAATTTGAAAGTGTTAA+CGG - chr4_1:41878493-41878512 None:intergenic 20.0%
!! GTTAACACTTTCAAATTATT+GGG + chr4_1:41878492-41878511 Msa0548150:intron 20.0%
!! TGGACAAAAATATATAGAAA+AGG - chr4_1:41878769-41878788 None:intergenic 20.0%
!! ATATTTCTCTCTATATATAC+TGG - chr4_1:41878789-41878808 None:intergenic 20.0%
!! AATAATCAATTATTGGCAAA+AGG - chr4_1:41879053-41879072 None:intergenic 20.0%
! ATAGCATAAGATATAAGCTA+AGG + chr4_1:41874617-41874636 Msa0548150:five_prime_UTR 25.0%
! CTTCAATATGCAAAATAACT+GGG - chr4_1:41874776-41874795 None:intergenic 25.0%
! ACTTCAATATGCAAAATAAC+TGG - chr4_1:41874777-41874796 None:intergenic 25.0%
! AAGTGTAATATCTCAGAAAT+GGG + chr4_1:41874881-41874900 Msa0548150:CDS 25.0%
!! CTTATGTATTATGGATTAAG+TGG + chr4_1:41875103-41875122 Msa0548150:intron 25.0%
!! CTTTAAAAAATTGGGAAAAG+GGG + chr4_1:41875404-41875423 Msa0548150:intron 25.0%
! TTAGTAGTAGGTATAATTCT+TGG + chr4_1:41875676-41875695 Msa0548150:intron 25.0%
! AGTGTAAAAAATCTTTACAC+CGG + chr4_1:41875751-41875770 Msa0548150:intron 25.0%
! ACTATTGAACATATTGTTTG+GGG + chr4_1:41875838-41875857 Msa0548150:intron 25.0%
! GTTAATATCATAACAGGATA+TGG + chr4_1:41875904-41875923 Msa0548150:intron 25.0%
! GACTATTTCAAATTTAGAGA+TGG + chr4_1:41876312-41876331 Msa0548150:CDS 25.0%
! AGAAGAAGATATTAGGAAAT+GGG - chr4_1:41876529-41876548 None:intergenic 25.0%
!!! CTTTTGATAACATGGATAAT+AGG + chr4_1:41876604-41876623 Msa0548150:intron 25.0%
!! TTTGATAACATGGATAATAG+GGG + chr4_1:41876606-41876625 Msa0548150:intron 25.0%
!! CAACAATTTTGTTGCATAAT+TGG + chr4_1:41876711-41876730 Msa0548150:intron 25.0%
!!! GCATAATTTGTTTTGAAGAA+TGG + chr4_1:41876965-41876984 Msa0548150:intron 25.0%
! GTCAAGTAAAACATGAAAAA+GGG - chr4_1:41877163-41877182 None:intergenic 25.0%
! TGTCAAGTAAAACATGAAAA+AGG - chr4_1:41877164-41877183 None:intergenic 25.0%
! GAAAAATTGAAAAATACCAC+CGG + chr4_1:41877219-41877238 Msa0548150:intron 25.0%
!!! CATATTTTTTTAAAAACCGG+TGG - chr4_1:41877238-41877257 None:intergenic 25.0%
!!! TCAATATTTTTCAGCAACAT+TGG + chr4_1:41877624-41877643 Msa0548150:intron 25.0%
!!! CAATATTTTTCAGCAACATT+GGG + chr4_1:41877625-41877644 Msa0548150:intron 25.0%
! ATACTTTCTATTGTGAATTG+GGG + chr4_1:41877733-41877752 Msa0548150:intron 25.0%
! ATACATATCTATAAACCAGT+AGG + chr4_1:41877913-41877932 Msa0548150:intron 25.0%
! GCTTATTTGAGCTTATTTAT+TGG + chr4_1:41878208-41878227 Msa0548150:intron 25.0%
! GAATCATATCATTATCTGTT+TGG + chr4_1:41878448-41878467 Msa0548150:intron 25.0%
! CGTTAACACTTTCAAATTAT+TGG + chr4_1:41878491-41878510 Msa0548150:intron 25.0%
! ATCTCTTCTTAAAATGTAGA+AGG - chr4_1:41878874-41878893 None:intergenic 25.0%
!!! TTTTAAGAAGAGATTGTTCA+TGG + chr4_1:41878880-41878899 Msa0548150:three_prime_UTR 25.0%
! GGAACTATTAACAAACAAAA+TGG - chr4_1:41878971-41878990 None:intergenic 25.0%
!! TTGTTTGTTAATAGTTCCAA+TGG + chr4_1:41878973-41878992 Msa0548150:three_prime_UTR 25.0%
GAATGAAGAAAGAAGAGAAT+GGG - chr4_1:41874695-41874714 None:intergenic 30.0%
AGAATGAAGAAAGAAGAGAA+TGG - chr4_1:41874696-41874715 None:intergenic 30.0%
TTCTTCTCATCTCAAGAATA+AGG + chr4_1:41874725-41874744 Msa0548150:five_prime_UTR 30.0%
GAAGTGTAATATCTCAGAAA+TGG + chr4_1:41874880-41874899 Msa0548150:CDS 30.0%
CTCATAAAACAGAGAAAACA+GGG - chr4_1:41874972-41874991 None:intergenic 30.0%
TCTCATAAAACAGAGAAAAC+AGG - chr4_1:41874973-41874992 None:intergenic 30.0%
! CTGTTTTATGAGACTTTGTT+TGG + chr4_1:41874980-41874999 Msa0548150:intron 30.0%
! GCTATTTCGCTTATGTATTA+TGG + chr4_1:41875094-41875113 Msa0548150:intron 30.0%
GATTAAGTGGAATTAGATCT+GGG + chr4_1:41875116-41875135 Msa0548150:intron 30.0%
TAAATTGAATGTAGTTTCCG+AGG + chr4_1:41875977-41875996 Msa0548150:CDS 30.0%
AAATTGAATGTAGTTTCCGA+GGG + chr4_1:41875978-41875997 Msa0548150:CDS 30.0%
! AATTTTCGAATTACAACCCT+CGG - chr4_1:41875997-41876016 None:intergenic 30.0%
AGATCTTGTAACTAAATTGG+AGG - chr4_1:41876119-41876138 None:intergenic 30.0%
TCCAATTTAGTTACAAGATC+TGG + chr4_1:41876118-41876137 Msa0548150:intron 30.0%
TCCAGATCTTGTAACTAAAT+TGG - chr4_1:41876122-41876141 None:intergenic 30.0%
TATGTATGGTGAAGATTTCA+AGG + chr4_1:41876163-41876182 Msa0548150:CDS 30.0%
ATGTATGGTGAAGATTTCAA+GGG + chr4_1:41876164-41876183 Msa0548150:CDS 30.0%
ACTGCATATAACTTACTGTT+TGG - chr4_1:41876198-41876217 None:intergenic 30.0%
AAACAGTAAGTTATATGCAG+TGG + chr4_1:41876197-41876216 Msa0548150:intron 30.0%
! TTCAAATTTAGAGATGGACT+TGG + chr4_1:41876318-41876337 Msa0548150:CDS 30.0%
TATTAATACCTACGACCATA+AGG - chr4_1:41876435-41876454 None:intergenic 30.0%
GGATAAAATTATGAACCTTG+TGG - chr4_1:41876508-41876527 None:intergenic 30.0%
GAGAAGAAGATATTAGGAAA+TGG - chr4_1:41876530-41876549 None:intergenic 30.0%
TTTCCTAATATCTTCTTCTC+TGG + chr4_1:41876530-41876549 Msa0548150:intron 30.0%
AAACCAGAGAAGAAGATATT+AGG - chr4_1:41876536-41876555 None:intergenic 30.0%
!! AGTGTAGTCATTTTGAATTC+GGG - chr4_1:41876764-41876783 None:intergenic 30.0%
!! CAGTGTAGTCATTTTGAATT+CGG - chr4_1:41876765-41876784 None:intergenic 30.0%
TAAAATACAGCTCTATGACA+TGG - chr4_1:41876797-41876816 None:intergenic 30.0%
GCAACTAGCAAAAAATAATC+CGG - chr4_1:41876825-41876844 None:intergenic 30.0%
AAACATGAAAAAGGGAAATG+CGG - chr4_1:41877155-41877174 None:intergenic 30.0%
TTTATGCAGAATCATGTTGA+AGG + chr4_1:41877267-41877286 Msa0548150:intron 30.0%
ATAAAAATCAGCATCCCATA+AGG - chr4_1:41877343-41877362 None:intergenic 30.0%
GACGATGTTCATGTAAATAT+AGG + chr4_1:41877375-41877394 Msa0548150:CDS 30.0%
GTTGCTGAAAAATATTGAGT+AGG - chr4_1:41877622-41877641 None:intergenic 30.0%
TCAAAACAACGGATATACAT+TGG + chr4_1:41877670-41877689 Msa0548150:CDS 30.0%
!! GTATGCTATTTCCAATGATT+TGG + chr4_1:41877886-41877905 Msa0548150:CDS 30.0%
TATGTATGTTGCCAAATCAT+TGG - chr4_1:41877900-41877919 None:intergenic 30.0%
!! AACCAAATCAATGGACTAAA+AGG + chr4_1:41877969-41877988 Msa0548150:intron 30.0%
!! AACCTTTTAGTCCATTGATT+TGG - chr4_1:41877974-41877993 None:intergenic 30.0%
TGCTTGTATTTGTTCATATC+AGG + chr4_1:41878009-41878028 Msa0548150:intron 30.0%
GAGGTCTATAATTTATTGTC+TGG - chr4_1:41878157-41878176 None:intergenic 30.0%
TAGACCTCTTCAAATGATTT+AGG + chr4_1:41878169-41878188 Msa0548150:intron 30.0%
AGACCTCTTCAAATGATTTA+GGG + chr4_1:41878170-41878189 Msa0548150:intron 30.0%
!! CAAATGATTTAGGGTCTTTT+TGG + chr4_1:41878179-41878198 Msa0548150:intron 30.0%
TATAAGCATTTGTGAGACTT+TGG + chr4_1:41878231-41878250 Msa0548150:intron 30.0%
ATAAGCATTTGTGAGACTTT+GGG + chr4_1:41878232-41878251 Msa0548150:intron 30.0%
TTACTTTCATAAAGCTCTTC+AGG + chr4_1:41878273-41878292 Msa0548150:intron 30.0%
TTTATCCAAACATGGTCATA+TGG + chr4_1:41878426-41878445 Msa0548150:intron 30.0%
ACACTTTCAAATTATTGGGT+TGG + chr4_1:41878496-41878515 Msa0548150:intron 30.0%
!! TTCAAATTATTGGGTTGGTT+TGG + chr4_1:41878501-41878520 Msa0548150:intron 30.0%
!! TTTGTGTTGCTTCATTTGAT+TGG + chr4_1:41878560-41878579 Msa0548150:CDS 30.0%
TACTTCTTTAATCCTATCAG+CGG - chr4_1:41878608-41878627 None:intergenic 30.0%
! GGATTAAAGAAGTACATAGA+AGG + chr4_1:41878614-41878633 Msa0548150:CDS 30.0%
GGAAAAAAGAAAAATCTTGC+AGG - chr4_1:41878748-41878767 None:intergenic 30.0%
! TCTATTCTTTGTTGCTTGAA+AGG + chr4_1:41878944-41878963 Msa0548150:three_prime_UTR 30.0%
! CTATTCTTTGTTGCTTGAAA+GGG + chr4_1:41878945-41878964 Msa0548150:three_prime_UTR 30.0%
TCAATTATTGGCAAAAGGAA+AGG - chr4_1:41879048-41879067 None:intergenic 30.0%
AAATTGTTACGAAGTAGAGT+CGG - chr4_1:41879153-41879172 None:intergenic 30.0%
CTTGTTTGCAAGTATGGTAA+GGG - chr4_1:41874566-41874585 None:intergenic 35.0%
TATGTGAGTTGTGTTGTGTT+GGG - chr4_1:41874596-41874615 None:intergenic 35.0%
TTAATGACGTGGAAAAGTAG+AGG + chr4_1:41874843-41874862 Msa0548150:exon 35.0%
GGATTAAGTGGAATTAGATC+TGG + chr4_1:41875115-41875134 Msa0548150:intron 35.0%
!!! TGCTGTTTTTGAAGTAAGAG+AGG + chr4_1:41875282-41875301 Msa0548150:intron 35.0%
!!! GCTGTTTTTGAAGTAAGAGA+GGG + chr4_1:41875283-41875302 Msa0548150:intron 35.0%
ATCTGCCTTCTTCTTTATTC+CGG + chr4_1:41875560-41875579 Msa0548150:intron 35.0%
GTAAAAAATCTTTACACCGG+CGG + chr4_1:41875754-41875773 Msa0548150:intron 35.0%
ATATTGTTTGGGGAATCAAG+TGG + chr4_1:41875848-41875867 Msa0548150:intron 35.0%
! TGGAGTATTCCTGAACAAAA+TGG + chr4_1:41875924-41875943 Msa0548150:CDS 35.0%
! TGTTCTTTTCTTGTGTCTGT+TGG + chr4_1:41876093-41876112 Msa0548150:intron 35.0%
AGTTACAAGATCTGGAAATG+AGG + chr4_1:41876126-41876145 Msa0548150:intron 35.0%
TTGGACTTACGATTACATCA+TGG - chr4_1:41876227-41876246 None:intergenic 35.0%
ACAGCACATTTGCATTAGTT+TGG - chr4_1:41876269-41876288 None:intergenic 35.0%
CTGTATTGAATGTAGAGCTT+TGG + chr4_1:41876285-41876304 Msa0548150:intron 35.0%
CTCCTGTTTCAGAAGATATA+AGG + chr4_1:41876380-41876399 Msa0548150:CDS 35.0%
!! GTCCTTATATCTTCTGAAAC+AGG - chr4_1:41876385-41876404 None:intergenic 35.0%
AAGAAGCTAGAGGAAGAAAA+AGG + chr4_1:41876637-41876656 Msa0548150:CDS 35.0%
ATTGTCATGCGCTTTGTAAT+TGG + chr4_1:41876661-41876680 Msa0548150:CDS 35.0%
!!! AGAGCTGTATTTTAGTCTTC+CGG + chr4_1:41876803-41876822 Msa0548150:intron 35.0%
CTGATGTAGCACTAGTTAAA+AGG - chr4_1:41877026-41877045 None:intergenic 35.0%
!! CTTTTAACTAGTGCTACATC+AGG + chr4_1:41877024-41877043 Msa0548150:intron 35.0%
AACATGAAAAAGGGAAATGC+GGG - chr4_1:41877154-41877173 None:intergenic 35.0%
!! GTCACTGTCATTGCTTTTAA+AGG + chr4_1:41877197-41877216 Msa0548150:intron 35.0%
TTGTCTTTGCTGACAATTCA+AGG - chr4_1:41877296-41877315 None:intergenic 35.0%
TTTGATTGTTGCTGACAAGT+TGG + chr4_1:41877415-41877434 Msa0548150:intron 35.0%
TTTACACATAAGCTGATGTG+AGG - chr4_1:41877542-41877561 None:intergenic 35.0%
GAGTAGGATATTCAGACAAA+AGG - chr4_1:41877606-41877625 None:intergenic 35.0%
!! TTAGGCATCGATCAAAACAA+CGG + chr4_1:41877659-41877678 Msa0548150:CDS 35.0%
TACATTGGATGCATGAAATC+TGG + chr4_1:41877685-41877704 Msa0548150:CDS 35.0%
!!! GTATTTCTCACTTTTGAGAC+AGG - chr4_1:41877717-41877736 None:intergenic 35.0%
GTAAGAAGGTAAGAAGCTAA+TGG - chr4_1:41877775-41877794 None:intergenic 35.0%
! TTTTATGTAGTAGGACCTAC+TGG - chr4_1:41877931-41877950 None:intergenic 35.0%
TCTTCATAAGTATGCCAATG+AGG + chr4_1:41878037-41878056 Msa0548150:CDS 35.0%
TCAATAGGAGCTTGGTTTAT+TGG + chr4_1:41878065-41878084 Msa0548150:CDS 35.0%
TGGAAATTATATTCACCTGG+AGG - chr4_1:41878137-41878156 None:intergenic 35.0%
GTCTGGAAATTATATTCACC+TGG - chr4_1:41878140-41878159 None:intergenic 35.0%
AGACCCTAAATCATTTGAAG+AGG - chr4_1:41878176-41878195 None:intergenic 35.0%
!! TTTAGGGTCTTTTTGGATTG+TGG + chr4_1:41878186-41878205 Msa0548150:intron 35.0%
TGATTCCATATGACCATGTT+TGG - chr4_1:41878434-41878453 None:intergenic 35.0%
! AAAGAAGTACATAGAAGGTG+TGG + chr4_1:41878619-41878638 Msa0548150:CDS 35.0%
GAGAAGGTGAAAATGCTTTA+TGG + chr4_1:41878641-41878660 Msa0548150:CDS 35.0%
! TTTATGGAGTGCTTCTTTCT+AGG + chr4_1:41878657-41878676 Msa0548150:CDS 35.0%
AGTTAGGAAGAACTCATCAA+AGG - chr4_1:41878690-41878709 None:intergenic 35.0%
GGTAATAATCTTCCTGAGTT+AGG - chr4_1:41878706-41878725 None:intergenic 35.0%
CTTAAAATGTAGAAGGTCCA+TGG - chr4_1:41878867-41878886 None:intergenic 35.0%
TGTATCTTAGTAATTCCCCT+AGG + chr4_1:41879116-41879135 Msa0548150:three_prime_UTR 35.0%
GTATCTTAGTAATTCCCCTA+GGG + chr4_1:41879117-41879136 Msa0548150:three_prime_UTR 35.0%
TATCTTAGTAATTCCCCTAG+GGG + chr4_1:41879118-41879137 Msa0548150:three_prime_UTR 35.0%
GCTTGTTTGCAAGTATGGTA+AGG - chr4_1:41874567-41874586 None:intergenic 40.0%
!! GTGTAGCTTGTTTGCAAGTA+TGG - chr4_1:41874572-41874591 None:intergenic 40.0%
CTATGTGAGTTGTGTTGTGT+TGG - chr4_1:41874597-41874616 None:intergenic 40.0%
!! AGAATGGGTTGAGAAGAAGA+TGG - chr4_1:41874680-41874699 None:intergenic 40.0%
!!! TGGGCACTTTTTCTTTGTCT+CGG + chr4_1:41874900-41874919 Msa0548150:CDS 40.0%
!! GTTTGACTCTGAAACCTCAA+GGG - chr4_1:41875502-41875521 None:intergenic 40.0%
!! AGTTTGACTCTGAAACCTCA+AGG - chr4_1:41875503-41875522 None:intergenic 40.0%
ACCAACCGGAATAAAGAAGA+AGG - chr4_1:41875568-41875587 None:intergenic 40.0%
TTCTTCTTTATTCCGGTTGG+TGG + chr4_1:41875567-41875586 Msa0548150:intron 40.0%
TCTTCTTTATTCCGGTTGGT+GGG + chr4_1:41875568-41875587 Msa0548150:intron 40.0%
AAAAAATACACCCCACCAAC+CGG - chr4_1:41875582-41875601 None:intergenic 40.0%
ATTTAAGTCACATACACCGC+CGG - chr4_1:41875773-41875792 None:intergenic 40.0%
! CTTGCAAGTCCATTTTGTTC+AGG - chr4_1:41875936-41875955 None:intergenic 40.0%
!! TTACCAGTTTCTGAAGCTGT+CGG - chr4_1:41875960-41875979 None:intergenic 40.0%
CGCGAAACTAGAGATATGTA+TGG + chr4_1:41876149-41876168 Msa0548150:CDS 40.0%
!! AGAAAGTACCTTATGGTCGT+AGG + chr4_1:41876424-41876443 Msa0548150:CDS 40.0%
TTAATACTGCCTTTAGCAGC+AGG + chr4_1:41876449-41876468 Msa0548150:CDS 40.0%
CTTTAGCAGCAGGAAAAGAA+GGG + chr4_1:41876459-41876478 Msa0548150:CDS 40.0%
GGACAAAAGAAAGAAGCTAG+AGG + chr4_1:41876627-41876646 Msa0548150:CDS 40.0%
!! GTTTCTTCATCCTGCTTTTG+AGG + chr4_1:41876733-41876752 Msa0548150:intron 40.0%
TTAACTAGTGCTACATCAGG+AGG + chr4_1:41877027-41877046 Msa0548150:intron 40.0%
! CTGCTTCAATAGCTCTATCT+AGG - chr4_1:41877056-41877075 None:intergenic 40.0%
AGATAGAGCTATTGAAGCAG+AGG + chr4_1:41877056-41877075 Msa0548150:CDS 40.0%
! GAAAGCATGGAGATTTCTTG+AGG + chr4_1:41877082-41877101 Msa0548150:CDS 40.0%
ACCTTCTTACTTTGTTGCAG+AGG + chr4_1:41877785-41877804 Msa0548150:intron 40.0%
CCTTCTTACTTTGTTGCAGA+GGG + chr4_1:41877786-41877805 Msa0548150:intron 40.0%
CTTCTTACTTTGTTGCAGAG+GGG + chr4_1:41877787-41877806 Msa0548150:intron 40.0%
TCCTATTGACACATCCTCAT+TGG - chr4_1:41878054-41878073 None:intergenic 40.0%
TTGGTTTATTGGACTTGACG+TGG + chr4_1:41878076-41878095 Msa0548150:CDS 40.0%
! GTTTGGTTTCAGATTGCGAA+TGG + chr4_1:41878518-41878537 Msa0548150:intron 40.0%
TGATGAGTTCTTCCTAACTC+AGG + chr4_1:41878691-41878710 Msa0548150:three_prime_UTR 40.0%
!! TTGCAGGCTTTGTTTCTTTC+TGG - chr4_1:41878732-41878751 None:intergenic 40.0%
! TTTTACACGCGAGAAAAAGC+TGG + chr4_1:41878811-41878830 Msa0548150:three_prime_UTR 40.0%
! TCATGGTTTGCAGCTAGATA+AGG + chr4_1:41878897-41878916 Msa0548150:three_prime_UTR 40.0%
! TCGGTATATTTTTCCCCTAG+GGG - chr4_1:41879134-41879153 None:intergenic 40.0%
! GTCGGTATATTTTTCCCCTA+GGG - chr4_1:41879135-41879154 None:intergenic 40.0%
! AGTCGGTATATTTTTCCCCT+AGG - chr4_1:41879136-41879155 None:intergenic 40.0%
!! GATCAGAAGTGTCAATGCTA+CGG - chr4_1:41879187-41879206 None:intergenic 40.0%
! ATGGGTTGAGAAGAAGATGG+TGG - chr4_1:41874677-41874696 None:intergenic 45.0%
CTGGAATGCTCTTCACTAAC+AGG + chr4_1:41874934-41874953 Msa0548150:CDS 45.0%
ACGGAGTTCAAATTCTCTCG+GGG - chr4_1:41875479-41875498 None:intergenic 45.0%
GACGGAGTTCAAATTCTCTC+GGG - chr4_1:41875480-41875499 None:intergenic 45.0%
GGACGGAGTTCAAATTCTCT+CGG - chr4_1:41875481-41875500 None:intergenic 45.0%
AATTTGAACTCCGTCCCTTG+AGG + chr4_1:41875485-41875504 Msa0548150:intron 45.0%
GCCTTCTTCTTTATTCCGGT+TGG + chr4_1:41875564-41875583 Msa0548150:intron 45.0%
! CTTCTTTATTCCGGTTGGTG+GGG + chr4_1:41875569-41875588 Msa0548150:intron 45.0%
TGTTTGGGGAATCAAGTGGA+TGG + chr4_1:41875852-41875871 Msa0548150:intron 45.0%
GTTCAAGAGTCAGTACGAAG+TGG + chr4_1:41876355-41876374 Msa0548150:CDS 45.0%
TATAAGGACGACTGAGTCGA+CGG + chr4_1:41876396-41876415 Msa0548150:CDS 45.0%
!! GGGCAAGAGAAAGTACCTTA+TGG + chr4_1:41876417-41876436 Msa0548150:CDS 45.0%
! CCTTCTTTTCCTGCTGCTAA+AGG - chr4_1:41876461-41876480 None:intergenic 45.0%
CCTTTAGCAGCAGGAAAAGA+AGG + chr4_1:41876458-41876477 Msa0548150:CDS 45.0%
TTATGAACCTTGTGGCAACC+AGG - chr4_1:41876500-41876519 None:intergenic 45.0%
TGCGCTTTGTAATTGGACAC+AGG + chr4_1:41876668-41876687 Msa0548150:CDS 45.0%
TGAAAAAGGGAAATGCGGGA+CGG - chr4_1:41877150-41877169 None:intergenic 45.0%
CATTGGGAGAAACTCTCGTT+AGG + chr4_1:41877641-41877660 Msa0548150:CDS 45.0%
!!! TCTCACTTTTGAGACAGGAC+TGG - chr4_1:41877712-41877731 None:intergenic 45.0%
CCCTCTGCAACAAAGTAAGA+AGG - chr4_1:41877789-41877808 None:intergenic 45.0%
TACTTTGTTGCAGAGGGGTA+AGG + chr4_1:41877792-41877811 Msa0548150:intron 45.0%
AATAGCATACAACTGCCCTG+TGG - chr4_1:41877876-41877895 None:intergenic 45.0%
GCCAATGAGGATGTGTCAAT+AGG + chr4_1:41878050-41878069 Msa0548150:CDS 45.0%
AGGATGTGTCAATAGGAGCT+TGG + chr4_1:41878057-41878076 Msa0548150:CDS 45.0%
GATGATCGAAGACTTTGCTG+TGG + chr4_1:41878107-41878126 Msa0548150:intron 45.0%
GGTTTCAGATTGCGAATGGA+AGG + chr4_1:41878522-41878541 Msa0548150:intron 45.0%
TCATTTGATTGGAGCTGCAG+TGG + chr4_1:41878571-41878590 Msa0548150:CDS 45.0%
GAATTTGTAGGTCCGCTGAT+AGG + chr4_1:41878593-41878612 Msa0548150:CDS 45.0%
! GTACATAGAAGGTGTGGAGA+AGG + chr4_1:41878625-41878644 Msa0548150:CDS 45.0%
!! GGCTTTGTTTCTTTCTGGAG+TGG - chr4_1:41878727-41878746 None:intergenic 45.0%
AAGAGAGAATGCTTGCTCCA+TGG + chr4_1:41878847-41878866 Msa0548150:three_prime_UTR 45.0%
!! AAATAAATGTATAATTAATT+TGG + chr4_1:41876994-41877013 Msa0548150:intron 5.0%
GCAAGTATGGTAAGGGACGT+TGG - chr4_1:41874559-41874578 None:intergenic 50.0%
TGTCTCGGTAGTTTCTGTGC+TGG + chr4_1:41874915-41874934 Msa0548150:CDS 50.0%
!! GACTCTGAAACCTCAAGGGA+CGG - chr4_1:41875498-41875517 None:intergenic 50.0%
AGACCGACAGCTTCAGAAAC+TGG + chr4_1:41875954-41875973 Msa0548150:CDS 50.0%
ATAAGGACGACTGAGTCGAC+GGG + chr4_1:41876397-41876416 Msa0548150:CDS 50.0%
CAGCAGGAAAAGAAGGGACT+CGG + chr4_1:41876465-41876484 Msa0548150:CDS 50.0%
! GGAAAAGAAGGGACTCGGTT+CGG + chr4_1:41876470-41876489 Msa0548150:CDS 50.0%
! GAAAAGAAGGGACTCGGTTC+GGG + chr4_1:41876471-41876490 Msa0548150:CDS 50.0%
GAAGCAGAGGACAGAAAGCA+TGG + chr4_1:41877069-41877088 Msa0548150:CDS 50.0%
GCATGGAGATTTCTTGAGGC+TGG + chr4_1:41877086-41877105 Msa0548150:CDS 50.0%
TTGCCACTGCTGTGACCTTA+TGG + chr4_1:41877325-41877344 Msa0548150:CDS 50.0%
TGCCACTGCTGTGACCTTAT+GGG + chr4_1:41877326-41877345 Msa0548150:CDS 50.0%
ATCCCATAAGGTCACAGCAG+TGG - chr4_1:41877331-41877350 None:intergenic 50.0%
ACTTCCAATGCTCGGGTTCA+TGG - chr4_1:41877820-41877839 None:intergenic 50.0%
!! GAACCCGAGCATTGGAAGTT+TGG + chr4_1:41877821-41877840 Msa0548150:CDS 50.0%
TCGCCAAACTTCCAATGCTC+GGG - chr4_1:41877827-41877846 None:intergenic 50.0%
CTCGCCAAACTTCCAATGCT+CGG - chr4_1:41877828-41877847 None:intergenic 50.0%
CATTGGAAGTTTGGCGAGTC+TGG + chr4_1:41877830-41877849 Msa0548150:CDS 50.0%
GGAGCTGCAGTGGAATTTGT+AGG + chr4_1:41878581-41878600 Msa0548150:CDS 50.0%
! GGAGCTTGATAGCTAGCCAT+TGG - chr4_1:41878992-41879011 None:intergenic 50.0%
!! TCGGGTTGAGCCTCAAAAGC+AGG - chr4_1:41876746-41876765 None:intergenic 55.0%
GGTACCATGAACCCGAGCAT+TGG + chr4_1:41877813-41877832 Msa0548150:CDS 55.0%
AAGTACTTCCGCCATGCCAC+AGG + chr4_1:41877857-41877876 Msa0548150:CDS 55.0%
AGTACTTCCGCCATGCCACA+GGG + chr4_1:41877858-41877877 Msa0548150:CDS 55.0%
CATACAACTGCCCTGTGGCA+TGG - chr4_1:41877871-41877890 None:intergenic 55.0%
! AGATGGACTTGGCTGCTGCG+AGG + chr4_1:41876329-41876348 Msa0548150:CDS 60.0%
! GATGGACTTGGCTGCTGCGA+GGG + chr4_1:41876330-41876349 Msa0548150:CDS 60.0%
ACAACTGCCCTGTGGCATGG+CGG - chr4_1:41877868-41877887 None:intergenic 60.0%
! CTTTGCTGTGGCACTCCTCC+AGG + chr4_1:41878119-41878138 Msa0548150:intron 60.0%
! TGCGAATGGAAGGCGCAAGC+AGG + chr4_1:41878532-41878551 Msa0548150:CDS 60.0%
CGGGCTACCTGGTTGCCACA+AGG + chr4_1:41876490-41876509 Msa0548150:CDS 65.0%
!! GGGACTCGGTTCGGGCTACC+TGG + chr4_1:41876479-41876498 Msa0548150:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41874549 41879208 41874549 ID=Msa0548150;Name=Msa0548150
chr4_1 mRNA 41874549 41879208 41874549 ID=Msa0548150-mRNA-1;Parent=Msa0548150;Name=Msa0548150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=297|0.9|0.90|1|1|1|11|530|402
chr4_1 exon 41874549 41874955 41874549 ID=Msa0548150-mRNA-1:exon:10745;Parent=Msa0548150-mRNA-1
chr4_1 exon 41875920 41876016 41875920 ID=Msa0548150-mRNA-1:exon:10746;Parent=Msa0548150-mRNA-1
chr4_1 exon 41876128 41876201 41876128 ID=Msa0548150-mRNA-1:exon:10747;Parent=Msa0548150-mRNA-1
chr4_1 exon 41876300 41876511 41876300 ID=Msa0548150-mRNA-1:exon:10748;Parent=Msa0548150-mRNA-1
chr4_1 exon 41876626 41876689 41876626 ID=Msa0548150-mRNA-1:exon:10749;Parent=Msa0548150-mRNA-1
chr4_1 exon 41877035 41877107 41877035 ID=Msa0548150-mRNA-1:exon:10750;Parent=Msa0548150-mRNA-1
chr4_1 exon 41877276 41877396 41877276 ID=Msa0548150-mRNA-1:exon:10751;Parent=Msa0548150-mRNA-1
chr4_1 exon 41877638 41877725 41877638 ID=Msa0548150-mRNA-1:exon:10752;Parent=Msa0548150-mRNA-1
chr4_1 exon 41877805 41877930 41877805 ID=Msa0548150-mRNA-1:exon:10753;Parent=Msa0548150-mRNA-1
chr4_1 exon 41878031 41878125 41878031 ID=Msa0548150-mRNA-1:exon:10754;Parent=Msa0548150-mRNA-1
chr4_1 exon 41878530 41879208 41878530 ID=Msa0548150-mRNA-1:exon:10755;Parent=Msa0548150-mRNA-1
chr4_1 five_prime_UTR 41874549 41874845 41874549 ID=Msa0548150-mRNA-1:five_prime_utr;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41874846 41874955 41874846 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41875920 41876016 41875920 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41876128 41876201 41876128 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41876300 41876511 41876300 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41876626 41876689 41876626 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41877035 41877107 41877035 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41877276 41877396 41877276 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41877638 41877725 41877638 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41877805 41877930 41877805 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41878031 41878125 41878031 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 CDS 41878530 41878678 41878530 ID=Msa0548150-mRNA-1:cds;Parent=Msa0548150-mRNA-1
chr4_1 three_prime_UTR 41878679 41879208 41878679 ID=Msa0548150-mRNA-1:three_prime_utr;Parent=Msa0548150-mRNA-1
Gene Sequence

>Msa0548150

ATGACGTGGAAAAGTAGAGGAGAATTTTCTTCAAGAAGTGTAATATCTCAGAAATGGGCACTTTTTCTTTGTCTCGGTAGTTTCTGTGCTGGAATGCTCTTCACTAACAGGATATGGAGTATTCCTGAACAAAATGGACTTGCAAGACCGACAGCTTCAGAAACTGGTAAATTGAATGTAGTTTCCGAGGGTTGTAATTCGAAAATTTTACAAGATCTGGAAATGAGGCGCGAAACTAGAGATATGTATGGTGAAGATTTCAAGGGTCATAATTCCAAACAAGCTTTGGATAAGACTATTTCAAATTTAGAGATGGACTTGGCTGCTGCGAGGGCTGTTCAAGAGTCAGTACGAAGTGGTGCTCCTGTTTCAGAAGATATAAGGACGACTGAGTCGACGGGCAAGAGAAAGTACCTTATGGTCGTAGGTATTAATACTGCCTTTAGCAGCAGGAAAAGAAGGGACTCGGTTCGGGCTACCTGGTTGCCACAAGGGGACAAAAGAAAGAAGCTAGAGGAAGAAAAAGGCATTGTCATGCGCTTTGTAATTGGACACAGTGCTACATCAGGAGGTATCCTAGATAGAGCTATTGAAGCAGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTGACCTTATGGGATGCTGATTTTTATGTCAAAGTTGATGACGATGTTCATGTAAATATAGCAACATTGGGAGAAACTCTCGTTAGGCATCGATCAAAACAACGGATATACATTGGATGCATGAAATCTGGACCAGTCCTGTCTCAAAAAGGGGTAAGGTACCATGAACCCGAGCATTGGAAGTTTGGCGAGTCTGGAAACAAGTACTTCCGCCATGCCACAGGGCAGTTGTATGCTATTTCCAATGATTTGGCAACATACATATCTATAAACCAGAATGTTCTTCATAAGTATGCCAATGAGGATGTGTCAATAGGAGCTTGGTTTATTGGACTTGACGTGGAGCATATCGATGATCGAAGACTTTGCTATTGCGAATGGAAGGCGCAAGCAGGCAACATTTGTGTTGCTTCATTTGATTGGAGCTGCAGTGGAATTTGTAGGTCCGCTGATAGGATTAAAGAAGTACATAGAAGGTGTGGAGAAGGTGAAAATGCTTTATGGAGTGCTTCTTTCTAG

Protein sequence

>Msa0548150

MTWKSRGEFSSRSVISQKWALFLCLGSFCAGMLFTNRIWSIPEQNGLARPTASETGKLNVVSEGCNSKILQDLEMRRETRDMYGEDFKGHNSKQALDKTISNLEMDLAAARAVQESVRSGAPVSEDIRTTESTGKRKYLMVVGINTAFSSRKRRDSVRATWLPQGDKRKKLEEEKGIVMRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVTLWDADFYVKVDDDVHVNIATLGETLVRHRSKQRIYIGCMKSGPVLSQKGVRYHEPEHWKFGESGNKYFRHATGQLYAISNDLATYISINQNVLHKYANEDVSIGAWFIGLDVEHIDDRRLCYCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSASF*