AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097690 MtrunA17_Chr1g0152211 91.884 998 17 5 1 934 28 1025 0.0 1848
Msa0097690 MtrunA17_Chr1g0206921 50.613 978 388 26 14 934 64 1003 0.0 717
Msa0097690 MtrunA17_Chr4g0037851 25.047 535 280 19 58 524 191 672 2.07e-18 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097690 AT1G44910.1 53.306 983 367 19 1 932 17 958 0.0 817
Msa0097690 AT1G44910.2 54.009 898 332 16 39 892 62 922 0.0 773
Msa0097690 AT3G19670.3 41.176 935 456 22 49 931 98 990 0.0 572
Msa0097690 AT3G19670.1 41.176 935 456 22 49 931 98 990 0.0 572
Msa0097690 AT3G19670.2 41.176 935 456 22 49 931 98 990 0.0 572
Msa0097690 AT3G19670.4 41.176 935 456 22 49 931 79 971 0.0 572
Msa0097690 AT3G19840.1 27.206 272 154 12 1 234 65 330 7.85e-12 70.1

Find 230 sgRNAs with CRISPR-Local

Find 1029 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATGGCTTGCCTGTTTC+TGG 0.038438 1_3:-3536031 Msa0097690:CDS
GATAATCAACGACCAGTTTC+TGG 0.168664 1_3:-3532249 Msa0097690:CDS
AGCAGAATATAGGAAATTTC+TGG 0.198110 1_3:-3528226 Msa0097690:CDS
ATGTACACGCCTGTGAATTT+AGG 0.202335 1_3:-3522845 Msa0097690:three_prime_UTR
GGCCTGTTTGTTTGAATATA+TGG 0.213492 1_3:+3536109 None:intergenic
AAATGCATTTAAAGCGCTTT+TGG 0.225366 1_3:-3531282 Msa0097690:CDS
AGAACTTCACCTGCATCTTT+TGG 0.233965 1_3:-3522909 Msa0097690:three_prime_UTR
CCATATACCTTGAGTTCTTC+TGG 0.251280 1_3:+3532534 None:intergenic
ACATCCTCAAATAAATCTTT+TGG 0.289484 1_3:+3525951 None:intergenic
GGGACCACGGGGACGGTTCC+AGG 0.299819 1_3:-3523028 Msa0097690:CDS
TTTGAGGCGGATGCTGGTAT+TGG 0.308848 1_3:+3535852 None:intergenic
TTTATCTAATCATTGCAAAA+AGG 0.318893 1_3:+3522931 None:intergenic
TTGAGGCGGATGCTGGTATT+GGG 0.320664 1_3:+3535853 None:intergenic
TTTCAGTTCACACCATCTTA+TGG 0.321948 1_3:-3535887 Msa0097690:intron
TTATCATCCATTCAGTATTT+GGG 0.338884 1_3:-3530943 Msa0097690:intron
TACCAAAGTTTCACCATCAT+TGG 0.343297 1_3:+3531443 None:intergenic
CGTTCAGTTGGCCCGTGAGC+AGG 0.344750 1_3:-3532442 Msa0097690:intron
CTCATTCCATCCAGTTCTCC+TGG 0.384057 1_3:+3523010 None:intergenic
TTCTGATTGGACGTGGGAAC+AGG 0.389042 1_3:-3531243 Msa0097690:intron
CTGTGAATGTTCATTCTGAT+TGG 0.390623 1_3:-3531256 Msa0097690:CDS
CAATGAAATTTGAAGATTTG+TGG 0.400009 1_3:+3522740 None:intergenic
ACAGCAGTTGCAGGAAGCTT+AGG 0.403204 1_3:-3532135 Msa0097690:CDS
TGAGGAGGTGCTCCAGAAAC+AGG 0.404094 1_3:+3536019 None:intergenic
TGTTCAGAGTTGTTGTTTGC+GGG 0.405075 1_3:+3537519 None:intergenic
GGGCTGATGCATCAACTGTT+TGG 0.410617 1_3:-3532750 Msa0097690:CDS
ATATAATGTTCTGGCAAATA+CGG 0.412466 1_3:-3522681 Msa0097690:three_prime_UTR
GATATAGGAACGAGTCCGTC+GGG 0.415488 1_3:-3526228 Msa0097690:intron
AGCTACTTGCAAAACAATAT+CGG 0.417106 1_3:-3525227 Msa0097690:CDS
GGGCTTGAAGCAAGACCATT+AGG 0.420839 1_3:+3532300 None:intergenic
TGCCATATATTCAAACAAAC+AGG 0.421533 1_3:-3536111 Msa0097690:CDS
ACCACACGTCAAGGGATTCC+AGG 0.423906 1_3:-3537411 Msa0097690:five_prime_UTR
ACCACTGATAATCCAGAAAC+TGG 0.425854 1_3:+3532237 None:intergenic
AGAGTACAAGGCAATCTAGT+TGG 0.428021 1_3:-3533556 Msa0097690:CDS
AATATTTGCATATAATGTTC+TGG 0.432563 1_3:-3522690 Msa0097690:three_prime_UTR
AAGAAGGCATCAGAGCAGTA+TGG 0.433242 1_3:-3523282 Msa0097690:CDS
GGAATGAGGAGCTTGAAGAT+GGG 0.437118 1_3:-3522995 Msa0097690:CDS
ACTTCCTTATATAGTTCAAT+TGG 0.438478 1_3:-3523985 Msa0097690:intron
AGCGACTACATCAGTATTTG+AGG 0.439124 1_3:-3525275 Msa0097690:CDS
ACTGCACCTACAGCAGTTGC+AGG 0.439764 1_3:-3532144 Msa0097690:CDS
TGGAGCACCTCTTCAAGATA+TGG 0.442331 1_3:-3531924 Msa0097690:CDS
CTGTTCAGAGTTGTTGTTTG+CGG 0.446010 1_3:+3537518 None:intergenic
AGGTTACTCAGCAATCAGTA+TGG 0.449369 1_3:-3532563 Msa0097690:CDS
AACCAATGATGGTGAAACTT+TGG 0.452007 1_3:-3531445 Msa0097690:CDS
TGGAATGAGGAGCTTGAAGA+TGG 0.452090 1_3:-3522996 Msa0097690:CDS
GATGCAACAGCTTGATATTG+AGG 0.452557 1_3:+3525993 None:intergenic
TCTTCTCCTCTCTATAACCA+TGG 0.455879 1_3:+3523336 None:intergenic
GCAGGAGGTGCATGCATTTG+AGG 0.456721 1_3:+3535836 None:intergenic
TACTCCAAAAGATTTATTTG+AGG 0.462163 1_3:-3525955 Msa0097690:CDS
GTCGGGATGCCTGCTATTCA+AGG 0.463184 1_3:-3536226 Msa0097690:CDS
CACGATTCTACTTCTGTCAA+TGG 0.463402 1_3:-3531944 Msa0097690:CDS
GAGCTTGAAGATGGGGAGCT+TGG 0.463687 1_3:-3522987 Msa0097690:CDS
ATGAAAAGTAGAAGGATTGT+TGG 0.464263 1_3:+3522866 None:intergenic
GACGACCAAGGTTGTCCGGC+AGG 0.464632 1_3:+3535818 None:intergenic
TCCAACACTTTGAGACCTAA+TGG 0.466267 1_3:-3532315 Msa0097690:CDS
CCCATGACTTCACAACAATT+CGG 0.467987 1_3:-3536271 Msa0097690:CDS
GAGTACAAGGCAATCTAGTT+GGG 0.468679 1_3:-3533555 Msa0097690:CDS
TGATTATCAGTGGCAACAAC+TGG 0.471567 1_3:+3532264 None:intergenic
AACGAGTCCGTCGGGGTGAA+AGG 0.472697 1_3:-3526220 Msa0097690:CDS
TGAGGACGACCAAGGTTGTC+CGG 0.473310 1_3:+3535814 None:intergenic
CTTTGAAAATCTTGAAAAGC+AGG 0.473646 1_3:-3525928 Msa0097690:intron
GGCACATAAAACTATTAGCC+AGG 0.474323 1_3:-3532421 Msa0097690:CDS
TTGTTTCTGACACCATTCCC+TGG 0.476710 1_3:+3532403 None:intergenic
GGGGACGGTTCCAGGAGAAC+TGG 0.476948 1_3:-3523020 Msa0097690:CDS
TTTGTGGCCTACATTACTCT+TGG 0.477285 1_3:+3522756 None:intergenic
ACAACTGGTGTAACAGAAGA+TGG 0.477825 1_3:+3532279 None:intergenic
AGCAGAGGAGGCAGCAGCAT+TGG 0.478603 1_3:+3532371 None:intergenic
CCGGCTGGAGTTCAATCATC+TGG 0.478668 1_3:-3535755 Msa0097690:CDS
GTTCACACCATCTTATGGTC+AGG 0.487720 1_3:-3535882 Msa0097690:CDS
CCATTCAGTATTTGGGTCAA+AGG 0.489226 1_3:-3530936 Msa0097690:intron
AATATCGGAGATCAATTTGA+AGG 0.489301 1_3:-3525212 Msa0097690:intron
GGAATACATTACATACTTGA+AGG 0.490150 1_3:-3523932 Msa0097690:CDS
CATAAAAGATATACTTAAGT+CGG 0.491240 1_3:-3525404 Msa0097690:CDS
CCTTGCTGCGTATGAATGAC+TGG 0.491926 1_3:+3536307 None:intergenic
GCAACAACTCTGCATCTGAT+TGG 0.493344 1_3:-3533780 Msa0097690:CDS
AAGCTTCCTGCAACTGCTGT+AGG 0.493376 1_3:+3532138 None:intergenic
CACCTCCTGCCGGACAACCT+TGG 0.495114 1_3:-3535823 Msa0097690:CDS
GCGTGTACATGAAAAGTAGA+AGG 0.495572 1_3:+3522858 None:intergenic
GTGGCGAGATTATTGCTTGA+AGG 0.495782 1_3:-3526126 Msa0097690:intron
CATCTTTGTGAATTCTTCGC+GGG 0.495972 1_3:+3530870 None:intergenic
GCAGGACTATATTCGTGACT+TGG 0.496186 1_3:-3526359 Msa0097690:intron
TGACCGGGCTGAATTTGTCT+TGG 0.497049 1_3:+3536163 None:intergenic
TCATCCTGTTTCATCATCAC+AGG 0.497226 1_3:-3536143 Msa0097690:CDS
ATAAAAGATATACTTAAGTC+GGG 0.500700 1_3:-3525403 Msa0097690:CDS
ATTAGAGAGAGCTAAGGAGA+AGG 0.502167 1_3:-3524326 Msa0097690:CDS
CCGTTCCTTCATCTAATGTC+GGG 0.507422 1_3:-3536243 Msa0097690:CDS
TTGGAGCTAGCTGCATTAGC+TGG 0.508131 1_3:+3532333 None:intergenic
AGAGAGAGCTAAGGAGAAGG+AGG 0.508555 1_3:-3524323 Msa0097690:CDS
TATTATTACTTCTTCAACAT+GGG 0.510330 1_3:-3524142 Msa0097690:CDS
AATTGCTGACCTTGAATAGC+AGG 0.511307 1_3:+3536217 None:intergenic
AGAGTTATTAGAGAGAGCTA+AGG 0.512572 1_3:-3524332 Msa0097690:CDS
CATGCATTTGAGGCGGATGC+TGG 0.512699 1_3:+3535846 None:intergenic
GGCGGAATTTAGCAGAATAT+AGG 0.514204 1_3:-3528236 Msa0097690:CDS
TTTGTTTGAATATATGGCAT+AGG 0.515540 1_3:+3536115 None:intergenic
AGTGCTTGGTTCGACTCCTA+TGG 0.517790 1_3:+3532182 None:intergenic
TCAGAGCAGTATGGAGGATG+TGG 0.518136 1_3:-3523273 Msa0097690:CDS
CTTTATACCAAGAGTAATGT+AGG 0.518872 1_3:-3522763 Msa0097690:three_prime_UTR
CAAATGCATGCACCTCCTGC+CGG 0.518916 1_3:-3535833 Msa0097690:CDS
CATGGTGGAACTTGAGAGAA+AGG 0.520392 1_3:-3530520 Msa0097690:intron
AAAGACACAAGAGGGACCAC+GGG 0.521871 1_3:-3523040 Msa0097690:CDS
TTACACAATCCTAAATTCAC+AGG 0.523335 1_3:+3522836 None:intergenic
CTAGAAGAACATATTGCTGA+TGG 0.524243 1_3:-3526170 Msa0097690:CDS
TGCTTGAAGTAACGACAGAA+TGG 0.525508 1_3:+3532205 None:intergenic
CTCACAGTTACAACAGTGCT+TGG 0.526579 1_3:+3532168 None:intergenic
ACATCTTTGTGAATTCTTCG+CGG 0.526596 1_3:+3530869 None:intergenic
GTATGGTCGGAATCGTTGTA+AGG 0.527423 1_3:+3537432 None:intergenic
GTAACGTCTGTACAGCCGGC+TGG 0.529488 1_3:-3535770 Msa0097690:CDS
CAAGAGCATACTGCTGGTGA+TGG 0.531052 1_3:-3533757 Msa0097690:CDS
TTTGGTATATGCAAATAAGC+TGG 0.531455 1_3:-3531427 Msa0097690:intron
GCCGTTCCTTCATCTAATGT+CGG 0.532042 1_3:-3536244 Msa0097690:CDS
AAGAGAGAAAACATCGAAGA+AGG 0.532161 1_3:-3523298 Msa0097690:CDS
CCCTTGACGTGTGGTATGGT+CGG 0.533216 1_3:+3537419 None:intergenic
ACCATTAGGTCTCAAAGTGT+TGG 0.536875 1_3:+3532314 None:intergenic
TTCTCAACAAATGCAACAGT+TGG 0.538488 1_3:-3536188 Msa0097690:CDS
CTGTTGAAAGAGTAAGAGAT+CGG 0.540036 1_3:-3530563 Msa0097690:CDS
AGATTTATTTGAAAGCTACA+TGG 0.541453 1_3:-3530538 Msa0097690:CDS
CGTACAGTGTATAGAGATTG+AGG 0.543077 1_3:+3536001 None:intergenic
TGATGATGAAACAGGATGAC+CGG 0.543456 1_3:+3536147 None:intergenic
AGCTGTAACGTCTGTACAGC+CGG 0.544674 1_3:-3535774 Msa0097690:CDS
AGAAGCTAGAGGCTGAAGAA+AGG 0.544989 1_3:-3530912 Msa0097690:CDS
ACGTAAGCGTGAAGAAGAAA+AGG 0.545043 1_3:-3523890 Msa0097690:intron
TGATATAGGAACGAGTCCGT+CGG 0.545937 1_3:-3526229 Msa0097690:intron
TGACTTGGAGAAGGAGGAAG+AGG 0.546026 1_3:-3526344 Msa0097690:CDS
CAATATTCTCCAAAAGATGC+AGG 0.547173 1_3:+3522900 None:intergenic
ATACTGCTGGTGATGGGAGA+AGG 0.548219 1_3:-3533750 Msa0097690:intron
GCTGTTGCATCAAATACATC+CGG 0.551042 1_3:-3525981 Msa0097690:CDS
GAAGTGACCGCAAGAAGTCT+AGG 0.551692 1_3:-3523202 Msa0097690:CDS
GGAGTTGATGTCACCTCTTG+AGG 0.553125 1_3:-3533522 Msa0097690:intron
ATACCTTCCTAGACTTCTTG+CGG 0.553463 1_3:+3523195 None:intergenic
GAAAGAGTTCACTTCTTCAG+AGG 0.554876 1_3:-3532728 Msa0097690:CDS
TTCAACATGGGAGGAATGCA+AGG 0.556166 1_3:-3524130 Msa0097690:CDS
TCTAGAAAATCGCGAAGACA+TGG 0.556892 1_3:-3523224 Msa0097690:CDS
ATACCCTGTGATGATGAAAC+AGG 0.557450 1_3:+3536139 None:intergenic
CAGGAGAACTGGATGGAATG+AGG 0.557842 1_3:-3523009 Msa0097690:CDS
TCCGAATTGTTGTGAAGTCA+TGG 0.558122 1_3:+3536270 None:intergenic
GAGCTAGCTGCATTAGCTGG+TGG 0.559039 1_3:+3532336 None:intergenic
GCTTGAAGTAACGACAGAAT+GGG 0.559357 1_3:+3532206 None:intergenic
TAAAGTCATCAGCAAGGCGT+TGG 0.560032 1_3:+3524281 None:intergenic
AGTTGATGTTGCAGCAGAGG+AGG 0.561689 1_3:+3532359 None:intergenic
TCTCCTGAGTCAGACAATGA+AGG 0.561975 1_3:-3523071 Msa0097690:CDS
AAAAGACACAAGAGGGACCA+CGG 0.563924 1_3:-3523041 Msa0097690:CDS
TCAGAGGAGAAAACCAATGA+TGG 0.566057 1_3:-3531456 Msa0097690:CDS
TAAAACTATTAGCCAGGGAA+TGG 0.567415 1_3:-3532415 Msa0097690:CDS
CTACCTTCATTGTCTGACTC+AGG 0.567758 1_3:+3523068 None:intergenic
GAATCCCTTGACGTGTGGTA+TGG 0.568039 1_3:+3537415 None:intergenic
TATATTCTGCTAAATTCCGC+CGG 0.569486 1_3:+3528238 None:intergenic
AGCTAACATCATCCACAAGA+TGG 0.570809 1_3:-3530727 Msa0097690:CDS
CCAGTCATTCATACGCAGCA+AGG 0.570823 1_3:-3536307 Msa0097690:five_prime_UTR
GTCGTTACTTCAAGCACCAT+AGG 0.571185 1_3:-3532198 Msa0097690:CDS
CTATATTCGTGACTTGGAGA+AGG 0.573107 1_3:-3526353 Msa0097690:CDS
TCCGACCATACCACACGTCA+AGG 0.576387 1_3:-3537420 Msa0097690:five_prime_UTR
TGTGAAGTCATGGGAACAAA+TGG 0.576862 1_3:+3536280 None:intergenic
CACATAAACAATCATATGCA+TGG 0.577352 1_3:-3536046 Msa0097690:CDS
CAGTCATTCATACGCAGCAA+GGG 0.580582 1_3:-3536306 Msa0097690:five_prime_UTR
TATTACTTCTTCAACATGGG+AGG 0.581858 1_3:-3524139 Msa0097690:CDS
AAAGAGTTCACTTCTTCAGA+GGG 0.582420 1_3:-3532727 Msa0097690:CDS
GGAAAAGGAAAATGCTGCTG+AGG 0.585150 1_3:-3528265 Msa0097690:CDS
ATGTACCTTCACAAAATCAC+AGG 0.586297 1_3:+3528200 None:intergenic
CCAGATGATTGAACTCCAGC+CGG 0.587420 1_3:+3535755 None:intergenic
TATAATGCCCTGAAAACACT+TGG 0.587574 1_3:-3531113 Msa0097690:CDS
CTGCAGGTATTATTACAACA+AGG 0.589073 1_3:-3532583 Msa0097690:intron
TGTTGAAAGAGTAAGAGATC+GGG 0.589167 1_3:-3530562 Msa0097690:CDS
GAATGAGGAGCTTGAAGATG+GGG 0.589298 1_3:-3522994 Msa0097690:CDS
ACATTAGTTTGTCCAACCAC+AGG 0.594069 1_3:+3531486 None:intergenic
GATTGGCAAGAGCATACTGC+TGG 0.595223 1_3:-3533763 Msa0097690:CDS
CCACACGTCAAGGGATTCCA+GGG 0.596561 1_3:-3537410 Msa0097690:intron
GACAATACCAGAAGAACTCA+AGG 0.597189 1_3:-3532541 Msa0097690:intron
ATGTTCATTCTGATTGGACG+TGG 0.597884 1_3:-3531250 Msa0097690:CDS
CACAAGAGGGACCACGGGGA+CGG 0.599081 1_3:-3523035 Msa0097690:CDS
AATACCTCCATATCTTGAAG+AGG 0.599572 1_3:+3531917 None:intergenic
AGATATACTTAAGTCGGGCA+AGG 0.600167 1_3:-3525398 Msa0097690:intron
AAAATGCTGCTGAGGAACAC+CGG 0.602673 1_3:-3528257 Msa0097690:CDS
CAACTGGTGTAACAGAAGAT+GGG 0.603013 1_3:+3532280 None:intergenic
GGCATCCCGACATTAGATGA+AGG 0.603036 1_3:+3536238 None:intergenic
TAACTTATTATATACACTCA+AGG 0.603685 1_3:-3524257 Msa0097690:intron
ATTACTACAACAAGAGTACA+AGG 0.603856 1_3:-3533568 Msa0097690:CDS
AAATACTGATGTAGTCGCTA+CGG 0.604006 1_3:+3525279 None:intergenic
CCCGACATTAGATGAAGGAA+CGG 0.604025 1_3:+3536243 None:intergenic
AACTAATGTGACTCCTTCAG+AGG 0.605322 1_3:-3531472 Msa0097690:CDS
CCCTGGAATCCCTTGACGTG+TGG 0.606033 1_3:+3537410 None:intergenic
TGGAGTTGATGTTGCAGCAG+AGG 0.607065 1_3:+3532356 None:intergenic
ACAGCTTGCTGTGCATGTTG+TGG 0.607782 1_3:+3536073 None:intergenic
AAAATTATACCTCCATCTTG+TGG 0.609019 1_3:+3530715 None:intergenic
ACGGTTCCAGGAGAACTGGA+TGG 0.609038 1_3:-3523016 Msa0097690:CDS
TGAGGCGGATGCTGGTATTG+GGG 0.609946 1_3:+3535854 None:intergenic
AACTGGTCGTTGATTATCAG+TGG 0.611617 1_3:+3532254 None:intergenic
ATATTATTACTTCTTCAACA+TGG 0.611639 1_3:-3524143 Msa0097690:CDS
TTTATTTGAAAGCTACATGG+TGG 0.617248 1_3:-3530535 Msa0097690:CDS
ACCAGTTTCTGGATTATCAG+TGG 0.617569 1_3:-3532238 Msa0097690:CDS
TGCATATGATTGTTTATGTG+AGG 0.618480 1_3:+3536049 None:intergenic
AGATGCAGAGTTGTTGCTAG+TGG 0.623592 1_3:+3533786 None:intergenic
AAGAGCATACTGCTGGTGAT+GGG 0.629015 1_3:-3533756 Msa0097690:CDS
GACCAAGGTTGTCCGGCAGG+AGG 0.629097 1_3:+3535821 None:intergenic
CTGAGTCAGACAATGAAGGT+AGG 0.631523 1_3:-3523067 Msa0097690:CDS
GGCAATGCCTGACCATAAGA+TGG 0.632811 1_3:+3535875 None:intergenic
GGAGCTTGGCGATGATGCAG+AGG 0.632857 1_3:-3522973 Msa0097690:CDS
TTCTCCTGGAACCGTCCCCG+TGG 0.634316 1_3:+3523024 None:intergenic
TATTCGTGACTTGGAGAAGG+AGG 0.635163 1_3:-3526350 Msa0097690:CDS
GCTCCAAGACAAATTCAGCC+CGG 0.637474 1_3:-3536166 Msa0097690:CDS
AGAGGTGACATCAACTCCAA+AGG 0.638169 1_3:+3533527 None:intergenic
CATCCTGTTTCATCATCACA+GGG 0.640900 1_3:-3536142 Msa0097690:CDS
ACAGCAAGAAAGAACAGAAG+CGG 0.642134 1_3:-3537499 Msa0097690:five_prime_UTR
CAAGACATGACTGACAGCCA+TGG 0.642401 1_3:-3523353 Msa0097690:CDS
TAGGCATAAAAGACACAAGA+GGG 0.646717 1_3:-3523048 Msa0097690:CDS
TGACCGCAAGAAGTCTAGGA+AGG 0.647233 1_3:-3523198 Msa0097690:intron
GCAACTTGCGAAATGCATCA+CGG 0.647762 1_3:+3526192 None:intergenic
AAGGCATCAGAGCAGTATGG+AGG 0.652072 1_3:-3523279 Msa0097690:CDS
GCACATAAAACTATTAGCCA+GGG 0.652408 1_3:-3532420 Msa0097690:CDS
GCAAGAAAGAACAGAAGCGG+CGG 0.652413 1_3:-3537496 Msa0097690:five_prime_UTR
AGTTAGTAAAGTCATCAGCA+AGG 0.652933 1_3:+3524275 None:intergenic
GGAGGTGCATGCATTTGAGG+CGG 0.653398 1_3:+3535839 None:intergenic
TGACAGCCATGGTTATAGAG+AGG 0.655215 1_3:-3523342 Msa0097690:CDS
AGCACCTCTTCAAGATATGG+AGG 0.656627 1_3:-3531921 Msa0097690:intron
CCGAATTGTTGTGAAGTCAT+GGG 0.660354 1_3:+3536271 None:intergenic
GATGATGAAACAGGATGACC+GGG 0.660914 1_3:+3536148 None:intergenic
CCGACCATACCACACGTCAA+GGG 0.664508 1_3:-3537419 Msa0097690:five_prime_UTR
GTTACAGCTGCAGCACTCTG+AGG 0.670283 1_3:+3535788 None:intergenic
TAACATCATCCACAAGATGG+AGG 0.670995 1_3:-3530724 Msa0097690:intron
TGCAGCACTCTGAGGTACTG+AGG 0.673442 1_3:+3535796 None:intergenic
GAAGTCATGGGAACAAATGG+TGG 0.676169 1_3:+3536283 None:intergenic
GGGTCAAAGGAAGAAGCTAG+AGG 0.686231 1_3:-3530923 Msa0097690:CDS
TGAGGTACTGAGGACGACCA+AGG 0.686869 1_3:+3535806 None:intergenic
ATATAGGAACGAGTCCGTCG+GGG 0.690250 1_3:-3526227 Msa0097690:intron
GTAGGCATAAAAGACACAAG+AGG 0.702923 1_3:-3523049 Msa0097690:CDS
TGTTCATTCTGATTGGACGT+GGG 0.712631 1_3:-3531249 Msa0097690:CDS
TGTTGTGGAACAGATGTCAG+TGG 0.716753 1_3:+3536088 None:intergenic
AAGACACAAGAGGGACCACG+GGG 0.722637 1_3:-3523039 Msa0097690:CDS
ATGCTGCTGAGGAACACCGG+CGG 0.733976 1_3:-3528254 Msa0097690:CDS
ACAGTGTATAGAGATTGAGG+AGG 0.757065 1_3:+3536004 None:intergenic
TTCTTACTGCTAAAACACAG+TGG 0.768613 1_3:-3526145 Msa0097690:CDS
GCGAAAACAAGCTTTCAACG+AGG 0.790814 1_3:-3531087 Msa0097690:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTTTTTTTTAAGAT+AGG - chr1_3:3522790-3522809 Msa0097690:three_prime_UTR 10.0%
!!! TTTTTCTTTTTTTTAAGATA+GGG - chr1_3:3522791-3522810 Msa0097690:three_prime_UTR 10.0%
!! ATATATATATATATATAACG+TGG + chr1_3:3523663-3523682 None:intergenic 10.0%
!! AAGAATAATATAATAACATA+TGG + chr1_3:3528812-3528831 None:intergenic 10.0%
!! AATAATAATGTACATTATTT+AGG - chr1_3:3531008-3531027 Msa0097690:intron 10.0%
!! AAAATTTAATGTTATCATTA+TGG - chr1_3:3532591-3532610 Msa0097690:intron 10.0%
!! TATATTATATTAATTCAGAA+AGG + chr1_3:3533209-3533228 None:intergenic 10.0%
!! AGAAATAAACAATATTAAAT+AGG + chr1_3:3535750-3535769 None:intergenic 10.0%
!!! ATAATAAAATATATTTCTGT+AGG - chr1_3:3535995-3536014 Msa0097690:intron 10.0%
!!! ATTTTATAAATAATTTTTGC+AGG - chr1_3:3536657-3536676 Msa0097690:intron 10.0%
!!! TGACTTATACATATTTTTTT+TGG - chr1_3:3522894-3522913 Msa0097690:three_prime_UTR 15.0%
!! TTTGAATCATAATATTACAA+GGG - chr1_3:3523266-3523285 Msa0097690:CDS 15.0%
!!! ATTTATTTTATGTTTGATAG+TGG + chr1_3:3523757-3523776 None:intergenic 15.0%
!! ATTTAAAAGTTATGAAAAGA+AGG + chr1_3:3524559-3524578 None:intergenic 15.0%
!!! ATTTACCCAATTTTTTTTAA+TGG - chr1_3:3527119-3527138 Msa0097690:intron 15.0%
!! AAATGCCATTAAAAAAAATT+GGG + chr1_3:3527127-3527146 Msa0097700:CDS 15.0%
!! AAAATGCCATTAAAAAAAAT+TGG + chr1_3:3527128-3527147 Msa0097700:CDS 15.0%
!! TTGATATAATAATCTTTCAT+GGG - chr1_3:3527336-3527355 Msa0097690:intron 15.0%
!!! AATTGATTTAATTAATGACA+CGG + chr1_3:3527534-3527553 None:intergenic 15.0%
!!! ATATTAGTAAAATCTGTTTT+AGG - chr1_3:3528548-3528567 Msa0097690:intron 15.0%
!!! GAATCTTATTTTTATTTTGT+TGG - chr1_3:3529810-3529829 Msa0097690:intron 15.0%
!! AAAATACTTGAATATAATGA+AGG - chr1_3:3529897-3529916 Msa0097690:intron 15.0%
!! AAATACTTGAATATAATGAA+GGG - chr1_3:3529898-3529917 Msa0097690:intron 15.0%
!!! ATATAAAAAAAAGTGTTTCA+AGG - chr1_3:3530053-3530072 Msa0097690:intron 15.0%
!!! TATAAAAAAAAGTGTTTCAA+GGG - chr1_3:3530054-3530073 Msa0097690:intron 15.0%
!!! ATTTACTGCTTATTTTATTT+TGG + chr1_3:3531244-3531263 None:intergenic 15.0%
!! TTCAAAAATTGAAAGAATAA+TGG + chr1_3:3531363-3531382 None:intergenic 15.0%
!!! TATTATTTCCATTTCATTTT+AGG - chr1_3:3532054-3532073 Msa0097690:intron 15.0%
!!! AATTTTTAAAAACATCAAGT+CGG + chr1_3:3532577-3532596 None:intergenic 15.0%
!!! AATGTTTTTTTTGTTTTTGT+TGG + chr1_3:3532896-3532915 None:intergenic 15.0%
!! ACAAAAACAAAAAAAACATT+TGG - chr1_3:3532896-3532915 Msa0097690:intron 15.0%
!! ATTATTATTATACTTCATCA+AGG + chr1_3:3533270-3533289 None:intergenic 15.0%
!!! ATAATATGAACTTTTATCAT+AGG - chr1_3:3533285-3533304 Msa0097690:intron 15.0%
!! ATAAATTAAATGCAAATATG+TGG + chr1_3:3534507-3534526 None:intergenic 15.0%
!! GTGATATAATTAAGTTATAA+TGG - chr1_3:3534678-3534697 Msa0097690:intron 15.0%
!! TATTATCTGAACTAAATAAA+TGG + chr1_3:3535198-3535217 None:intergenic 15.0%
!! TATTAGTTATAGTGTATAAT+TGG - chr1_3:3535497-3535516 Msa0097690:intron 15.0%
!! TTAATAGGTTTCTATAGTAT+AGG - chr1_3:3522924-3522943 Msa0097690:three_prime_UTR 20.0%
!! TAATAGGTTTCTATAGTATA+GGG - chr1_3:3522925-3522944 Msa0097690:three_prime_UTR 20.0%
!! GTTTGAATCATAATATTACA+AGG - chr1_3:3523265-3523284 Msa0097690:CDS 20.0%
!!! CTGTTTAAATGTAAAAGTAT+GGG + chr1_3:3524463-3524482 None:intergenic 20.0%
!! ATGAATATATTCCAATAGAA+CGG - chr1_3:3524606-3524625 Msa0097690:intron 20.0%
!! AATCACATTGAAATTTAAGT+AGG - chr1_3:3524722-3524741 Msa0097690:intron 20.0%
!! ATCACATTGAAATTTAAGTA+GGG - chr1_3:3524723-3524742 Msa0097690:intron 20.0%
!! TTGTCTAGTTAAAATTAAGT+AGG - chr1_3:3524753-3524772 Msa0097690:intron 20.0%
!! TGTCTAGTTAAAATTAAGTA+GGG - chr1_3:3524754-3524773 Msa0097690:intron 20.0%
!! AATGTCATGTTAAAAATTAG+AGG - chr1_3:3524784-3524803 Msa0097690:intron 20.0%
!! ATGTCATGTTAAAAATTAGA+GGG - chr1_3:3524785-3524804 Msa0097690:intron 20.0%
!! ATTACATAAGGAAATATCTA+GGG + chr1_3:3524859-3524878 None:intergenic 20.0%
!! TACTGAAATTGAGATTAAAA+AGG + chr1_3:3524981-3525000 None:intergenic 20.0%
!! TATATGTGATAATAATTGTG+AGG - chr1_3:3525002-3525021 Msa0097690:intron 20.0%
!!! TTTTTGTTCTGACAAATTTT+AGG - chr1_3:3526343-3526362 Msa0097690:CDS 20.0%
!!! AAGGTATTTTTGTTTTTTCT+AGG + chr1_3:3526466-3526485 None:intergenic 20.0%
!! AAAAACAAAAATACCTTGTA+CGG - chr1_3:3526469-3526488 Msa0097690:intron 20.0%
!! TATAAAATTACTAAAGGAAC+GGG + chr1_3:3527028-3527047 Msa0097700:CDS 20.0%
!! CTATAAAATTACTAAAGGAA+CGG + chr1_3:3527029-3527048 Msa0097700:CDS 20.0%
!!! GTTCCTTTAGTAATTTTATA+GGG - chr1_3:3527028-3527047 Msa0097690:intron 20.0%
!!! TGTATTATTCTTGTTAGTTT+TGG - chr1_3:3527237-3527256 Msa0097690:intron 20.0%
!! ATATCATTAATTAACTCTCT+AGG - chr1_3:3527272-3527291 Msa0097690:intron 20.0%
!! CATGAAAGATTATTATATCA+AGG + chr1_3:3527337-3527356 None:intergenic 20.0%
!! CTTGATATAATAATCTTTCA+TGG - chr1_3:3527335-3527354 Msa0097690:intron 20.0%
!!! ATTGATTTAATTAATGACAC+GGG + chr1_3:3527533-3527552 None:intergenic 20.0%
!!! AACATAATTTTATACATGGA+TGG + chr1_3:3528083-3528102 None:intergenic 20.0%
!!! CTTTTATCATTTAGAGTTAT+TGG - chr1_3:3528277-3528296 Msa0097690:intron 20.0%
!!! ATTGTATCATTCTAAAAGTA+TGG - chr1_3:3528301-3528320 Msa0097690:intron 20.0%
!! TTCTTATTCATCAATTGAAT+TGG + chr1_3:3528389-3528408 None:intergenic 20.0%
!! TCATATTTGAATCGTAATTT+AGG - chr1_3:3528996-3529015 Msa0097690:intron 20.0%
!!! ATTACAAACATTCTTTTTTC+AGG - chr1_3:3529402-3529421 Msa0097690:intron 20.0%
!! TAACATATTACTCAAGAAAA+AGG + chr1_3:3529759-3529778 None:intergenic 20.0%
!! TCTTACAATACTTATCAATT+TGG - chr1_3:3529783-3529802 Msa0097690:intron 20.0%
!! CTTACAATACTTATCAATTT+GGG - chr1_3:3529784-3529803 Msa0097690:intron 20.0%
!! TTACAATACTTATCAATTTG+GGG - chr1_3:3529785-3529804 Msa0097690:intron 20.0%
!!! TCTTATTTTTATTTTGTTGG+TGG - chr1_3:3529813-3529832 Msa0097690:intron 20.0%
!!! CTTATTTTTATTTTGTTGGT+GGG - chr1_3:3529814-3529833 Msa0097690:intron 20.0%
!!! TTATTTTTATTTTGTTGGTG+GGG - chr1_3:3529815-3529834 Msa0097690:intron 20.0%
!! ACTTACAGCAAAAAAAAAAA+TGG + chr1_3:3530014-3530033 None:intergenic 20.0%
!!! AGTTTTTGTTTTTCTATTGA+GGG - chr1_3:3530385-3530404 Msa0097690:intron 20.0%
!! AATATAGTATAGCTATATGT+AGG - chr1_3:3530460-3530479 Msa0097690:intron 20.0%
!! TATTTATAGTTAGTAAAGCT+GGG + chr1_3:3530570-3530589 None:intergenic 20.0%
!! ATATTTATAGTTAGTAAAGC+TGG + chr1_3:3530571-3530590 None:intergenic 20.0%
!! TGAAGACGTAATATAAATTA+GGG + chr1_3:3530695-3530714 None:intergenic 20.0%
!! TTGAAGACGTAATATAAATT+AGG + chr1_3:3530696-3530715 None:intergenic 20.0%
!! AAAATCTAACCTAAAAGTAA+AGG + chr1_3:3530743-3530762 None:intergenic 20.0%
!! AAATAAGCAGTAAATCATAA+TGG - chr1_3:3531249-3531268 Msa0097690:CDS 20.0%
!!! TTCTTTCAATTTTTGAATGT+TGG - chr1_3:3531366-3531385 Msa0097690:intron 20.0%
!!! TCTTTCAATTTTTGAATGTT+GGG - chr1_3:3531367-3531386 Msa0097690:intron 20.0%
!!! ATTAGGTTTTAATCTAAACA+GGG + chr1_3:3531761-3531780 None:intergenic 20.0%
!!! TATTAGGTTTTAATCTAAAC+AGG + chr1_3:3531762-3531781 None:intergenic 20.0%
!! TGAGAAACTTGAATTAAAAT+CGG + chr1_3:3531796-3531815 None:intergenic 20.0%
!!! AAATAGCTAAATTTTGCAAT+TGG - chr1_3:3531824-3531843 Msa0097690:intron 20.0%
!!! TTTTTTTTTTCTTTCTGAAG+AGG - chr1_3:3531988-3532007 Msa0097690:intron 20.0%
!! GAAATGGAAATAATAAGAAA+AGG + chr1_3:3532049-3532068 None:intergenic 20.0%
!!! TTTTTTGTTTTTGTTGGATA+CGG + chr1_3:3532890-3532909 None:intergenic 20.0%
!! AAACAAAAAAAACATTTGGT+CGG - chr1_3:3532900-3532919 Msa0097690:intron 20.0%
!! CACTAAAAAATACATAAAGT+TGG + chr1_3:3533358-3533377 None:intergenic 20.0%
!!! CAACTTTATGTATTTTTTAG+TGG - chr1_3:3533356-3533375 Msa0097690:intron 20.0%
!! AAAATATTCAAATCCAACAT+TGG - chr1_3:3533652-3533671 Msa0097690:intron 20.0%
!!! AAATTTGAGTTGAAAAACAT+CGG + chr1_3:3533886-3533905 None:intergenic 20.0%
!! AAACTCATTCACAATATTAA+GGG + chr1_3:3534285-3534304 None:intergenic 20.0%
!! TAACTTAATTATATCACTAG+AGG + chr1_3:3534675-3534694 None:intergenic 20.0%
!! CATAAAAGATATACTTAAGT+CGG - chr1_3:3534757-3534776 Msa0097690:intron 20.0%
!! ATAAAAGATATACTTAAGTC+GGG - chr1_3:3534758-3534777 Msa0097690:intron 20.0%
!! AATTTGAAGGTAATGAATTT+CGG - chr1_3:3534962-3534981 Msa0097690:intron 20.0%
!! AATAAAGAAGTTTATGTTTC+AGG + chr1_3:3535022-3535041 None:intergenic 20.0%
!!! TTTTCTTGACATTTATTAGA+AGG - chr1_3:3535096-3535115 Msa0097690:intron 20.0%
!! GTGCATTATTATAATTGTTA+AGG - chr1_3:3535247-3535266 Msa0097690:intron 20.0%
!!! TTGTTTATTTCTTTGCAAAA+TGG - chr1_3:3535758-3535777 Msa0097690:CDS 20.0%
!!! CTTCAAATAAAAGCTTTAAA+AGG + chr1_3:3535811-3535830 None:intergenic 20.0%
!! TAACTTATTATATACACTCA+AGG - chr1_3:3535904-3535923 Msa0097690:intron 20.0%
!! ATATTATTACTTCTTCAACA+TGG - chr1_3:3536018-3536037 Msa0097690:CDS 20.0%
!! TATTATTACTTCTTCAACAT+GGG - chr1_3:3536019-3536038 Msa0097690:CDS 20.0%
!!! AATCAACAAATTTTAGATCA+TGG + chr1_3:3536139-3536158 None:intergenic 20.0%
!!! CTATAGTAAAGAAATTTTTG+AGG - chr1_3:3536208-3536227 Msa0097690:CDS 20.0%
!!! GAAGTTTTACAATTTAGAAT+AGG - chr1_3:3537032-3537051 Msa0097690:intron 20.0%
!! TTTATCTAATCATTGCAAAA+AGG + chr1_3:3537233-3537252 None:intergenic 20.0%
!! AATATTTGCATATAATGTTC+TGG - chr1_3:3537471-3537490 Msa0097690:five_prime_UTR 20.0%
!!! AAAAAGAAAGTTTTATACCC+TGG + chr1_3:3522771-3522790 None:intergenic 25.0%
!!! TTCTTTTTTTTAAGATAGGG+TGG - chr1_3:3522794-3522813 Msa0097690:three_prime_UTR 25.0%
!!! TTTTTTGGTGATCGTTTAAT+AGG - chr1_3:3522909-3522928 Msa0097690:three_prime_UTR 25.0%
! TAAGAAATAAACCCTCAATT+TGG + chr1_3:3522982-3523001 None:intergenic 25.0%
! TATTTCTTATATTCTGCACT+TGG - chr1_3:3522993-3523012 Msa0097690:CDS 25.0%
! ATTACTCTGCATCTTAAAAT+AGG + chr1_3:3523026-3523045 None:intergenic 25.0%
! GTATAATTTAGATGCCAATT+TGG - chr1_3:3523072-3523091 Msa0097690:CDS 25.0%
! TTCAGCAGATTAATTAGATA+CGG + chr1_3:3523145-3523164 None:intergenic 25.0%
! TATCTAATTAATCTGCTGAA+TGG - chr1_3:3523145-3523164 Msa0097690:intron 25.0%
! TAAAAAACAAAGTGTAAGGA+AGG + chr1_3:3523432-3523451 None:intergenic 25.0%
!!! CCTTACACTTTGTTTTTTAT+CGG - chr1_3:3523433-3523452 Msa0097690:CDS 25.0%
! AAAATAAGACAAGTTTAGTG+AGG + chr1_3:3523492-3523511 None:intergenic 25.0%
! TCAGTTTCATAAAGAAAAAG+GGG + chr1_3:3523616-3523635 None:intergenic 25.0%
! GTCAGTTTCATAAAGAAAAA+GGG + chr1_3:3523617-3523636 None:intergenic 25.0%
! AGTCAGTTTCATAAAGAAAA+AGG + chr1_3:3523618-3523637 None:intergenic 25.0%
! TTCATAGATAAGACAAAGAT+TGG + chr1_3:3523700-3523719 None:intergenic 25.0%
! TTTGTCTTATCTATGAATTG+TGG - chr1_3:3523703-3523722 Msa0097690:intron 25.0%
!!! TTGATAGTGGTTATGAAATA+GGG + chr1_3:3523744-3523763 None:intergenic 25.0%
!!! TTTGATAGTGGTTATGAAAT+AGG + chr1_3:3523745-3523764 None:intergenic 25.0%
! TTTGTTTGAATATATGGCAT+AGG + chr1_3:3524049-3524068 None:intergenic 25.0%
! AGGAAAAACTTCAAAAAGTA+AGG + chr1_3:3524191-3524210 None:intergenic 25.0%
! ACTGAAAAATTGTAAAGGAT+GGG + chr1_3:3524261-3524280 None:intergenic 25.0%
! AACTGAAAAATTGTAAAGGA+TGG + chr1_3:3524262-3524281 None:intergenic 25.0%
! TGTGAACTGAAAAATTGTAA+AGG + chr1_3:3524266-3524285 None:intergenic 25.0%
! GCTGTTTAAATGTAAAAGTA+TGG + chr1_3:3524464-3524483 None:intergenic 25.0%
!!! AAGTAATGTGTTTTAAATGC+TGG - chr1_3:3524529-3524548 Msa0097690:intron 25.0%
! TCACATTGAAATTTAAGTAG+GGG - chr1_3:3524724-3524743 Msa0097690:intron 25.0%
! GTCTAGTTAAAATTAAGTAG+GGG - chr1_3:3524755-3524774 Msa0097690:intron 25.0%
! TCTAGTTAAAATTAAGTAGG+GGG - chr1_3:3524756-3524775 Msa0097690:intron 25.0%
! TGTCATGTTAAAAATTAGAG+GGG - chr1_3:3524786-3524805 Msa0097690:intron 25.0%
! GATTACATAAGGAAATATCT+AGG + chr1_3:3524860-3524879 None:intergenic 25.0%
! ACTGAAATTGAGATTACATA+AGG + chr1_3:3524871-3524890 None:intergenic 25.0%
! TTTACCCAAAACTCAAAATA+GGG + chr1_3:3525107-3525126 None:intergenic 25.0%
!! TTTTACCCAAAACTCAAAAT+AGG + chr1_3:3525108-3525127 None:intergenic 25.0%
!!! GTTTCTGGCTTAAATAAAAA+TGG - chr1_3:3525525-3525544 Msa0097690:intron 25.0%
!! TAGTTGTCACACATATATTT+TGG - chr1_3:3525978-3525997 Msa0097690:CDS 25.0%
! AAAAACTCAATTCTCACATA+AGG + chr1_3:3526230-3526249 None:intergenic 25.0%
! AATAATTGAAAAACCGTACA+AGG + chr1_3:3526485-3526504 None:intergenic 25.0%
!!! TGTCATTTTTTATCATCTGT+TGG - chr1_3:3526691-3526710 Msa0097690:intron 25.0%
!!! ATTTTAACAACTGCTCTATA+TGG - chr1_3:3526873-3526892 Msa0097690:intron 25.0%
! TTTAACCTAAAATGTGAGAT+TGG - chr1_3:3526963-3526982 Msa0097690:intron 25.0%
!! CGTTCCTTTAGTAATTTTAT+AGG - chr1_3:3527027-3527046 Msa0097690:intron 25.0%
! TCACCCTATAAAATTACTAA+AGG + chr1_3:3527034-3527053 Msa0097700:CDS 25.0%
!! ATTTTATAGGGTGATCTAAT+TGG - chr1_3:3527040-3527059 Msa0097690:intron 25.0%
!! TTTTATAGGGTGATCTAATT+GGG - chr1_3:3527041-3527060 Msa0097690:intron 25.0%
! CAAAAAAGAAACTAATAGGT+GGG + chr1_3:3527151-3527170 Msa0097700:CDS 25.0%
! GAAGCAAAAAAGAAACTAAT+AGG + chr1_3:3527155-3527174 Msa0097700:CDS 25.0%
! TGTTTAAATATTTATGCACG+CGG - chr1_3:3527194-3527213 Msa0097690:intron 25.0%
!!! ATCTTTTCTTTATTAGCTTG+CGG - chr1_3:3527301-3527320 Msa0097690:intron 25.0%
! ATATAATAATCTTTCATGGG+TGG - chr1_3:3527339-3527358 Msa0097690:intron 25.0%
!! TGTAACTGTTTTCCATTATT+TGG - chr1_3:3527665-3527684 Msa0097690:intron 25.0%
! ACAAATAGGTAAGAAATTGT+CGG + chr1_3:3527691-3527710 None:intergenic 25.0%
!! TGAACGGAAATTTTACAAAT+AGG + chr1_3:3527705-3527724 None:intergenic 25.0%
!! AATTTTTGAATCAAGTGAGT+TGG + chr1_3:3528060-3528079 None:intergenic 25.0%
!! GCAGAACATAATTTTATACA+TGG + chr1_3:3528087-3528106 None:intergenic 25.0%
!! CTTGCTAATTTAAAATTTCC+CGG - chr1_3:3528170-3528189 Msa0097690:intron 25.0%
!! ATCAATTGAATTGGTTTCAA+AGG + chr1_3:3528380-3528399 None:intergenic 25.0%
! ATTGCAAAAGTGAACAATAA+TGG + chr1_3:3528454-3528473 None:intergenic 25.0%
! GAATAGAAAAGATTCTTGAT+TGG + chr1_3:3528521-3528540 None:intergenic 25.0%
! ATCTCCTCTATTAAAAAACT+TGG - chr1_3:3528781-3528800 Msa0097690:intron 25.0%
! CCTAAAAGAGTAAAATAAAG+CGG + chr1_3:3528852-3528871 None:intergenic 25.0%
!! ATTTGAAACACAACAATGAA+TGG + chr1_3:3528968-3528987 None:intergenic 25.0%
! AAAATGAAGGATATGATGTA+AGG + chr1_3:3529137-3529156 None:intergenic 25.0%
! ATATCAAAAGCCAGATAAAA+CGG + chr1_3:3529188-3529207 None:intergenic 25.0%
! TTTATCATCCATTCAGTATT+TGG - chr1_3:3529217-3529236 Msa0097690:intron 25.0%
! TTATCATCCATTCAGTATTT+GGG - chr1_3:3529218-3529237 Msa0097690:intron 25.0%
! AGTAAATGCACAAATTTATG+TGG + chr1_3:3529340-3529359 None:intergenic 25.0%
! AGATTTATTTGAAAGCTACA+TGG - chr1_3:3529623-3529642 Msa0097690:intron 25.0%
! ATATCATTTAGGTCTATTGT+TGG - chr1_3:3529712-3529731 Msa0097690:intron 25.0%
! TTACTCAAGAAAAAGGTTTA+TGG + chr1_3:3529752-3529771 None:intergenic 25.0%
!!! TATTTTTATTTTGTTGGTGG+GGG - chr1_3:3529816-3529835 Msa0097690:intron 25.0%
!! TCATTGTAGCATTTACATTT+TGG - chr1_3:3529869-3529888 Msa0097690:intron 25.0%
! GTTCACATATTTATCAATGA+AGG - chr1_3:3530097-3530116 Msa0097690:intron 25.0%
! ACATATTTATCAATGAAGGA+AGG - chr1_3:3530101-3530120 Msa0097690:intron 25.0%
! CATATTTATCAATGAAGGAA+GGG - chr1_3:3530102-3530121 Msa0097690:intron 25.0%
! GAAAATAGAAATCAAATGGA+AGG + chr1_3:3530130-3530149 None:intergenic 25.0%
! CTTGGAAAATAGAAATCAAA+TGG + chr1_3:3530134-3530153 None:intergenic 25.0%
! AATGATCCACAACAAAATTA+TGG + chr1_3:3530351-3530370 None:intergenic 25.0%
! CTCAATAGAAAAACAAAAAC+TGG + chr1_3:3530386-3530405 None:intergenic 25.0%
!!! CAGTTTTTGTTTTTCTATTG+AGG - chr1_3:3530384-3530403 Msa0097690:intron 25.0%
!! ATTAACGGGTATTCAAATTT+CGG - chr1_3:3530417-3530436 Msa0097690:intron 25.0%
! TAACTTTGTAACTAACTTAG+TGG + chr1_3:3530539-3530558 None:intergenic 25.0%
!!! ATTAGTGAACCTTTACTTTT+AGG - chr1_3:3530731-3530750 Msa0097690:CDS 25.0%
!!! ACTTTTAGGTTAGATTTTAG+TGG - chr1_3:3530745-3530764 Msa0097690:intron 25.0%
!!! CTTTTAGGTTAGATTTTAGT+GGG - chr1_3:3530746-3530765 Msa0097690:intron 25.0%
! TTTGATGAAATGTACCTATA+TGG + chr1_3:3530807-3530826 None:intergenic 25.0%
! TACATTTATGGCTTATGATT+GGG + chr1_3:3531200-3531219 None:intergenic 25.0%
! TTACATTTATGGCTTATGAT+TGG + chr1_3:3531201-3531220 None:intergenic 25.0%
!!! TGGATTTTGGTTTACATTTA+TGG + chr1_3:3531212-3531231 None:intergenic 25.0%
!! CAAAAACCAGTAAATAGTTT+TGG + chr1_3:3531521-3531540 None:intergenic 25.0%
!!! AAACTATTTACTGGTTTTTG+TGG - chr1_3:3531521-3531540 Msa0097690:intron 25.0%
!!! AGCTAGTTAGTTTTTAATTC+TGG - chr1_3:3531587-3531606 Msa0097690:intron 25.0%
!!! GCTAGTTAGTTTTTAATTCT+GGG - chr1_3:3531588-3531607 Msa0097690:intron 25.0%
! TAAAACCTAATAATGAGCAT+TGG - chr1_3:3531770-3531789 Msa0097690:intron 25.0%
! ACAAAGGATAATAGTAAGAA+TGG + chr1_3:3531866-3531885 None:intergenic 25.0%
! TTATCCTTTGTGTAAACTTT+AGG - chr1_3:3531875-3531894 Msa0097690:intron 25.0%
!! TTTTCCTAAAGTTTACACAA+AGG + chr1_3:3531882-3531901 None:intergenic 25.0%
!! TTTGTGTAAACTTTAGGAAA+AGG - chr1_3:3531881-3531900 Msa0097690:intron 25.0%
! ACTATTCACCTAAAATGAAA+TGG + chr1_3:3532065-3532084 None:intergenic 25.0%
! ACTAAAAGAACTTATTTACC+TGG + chr1_3:3532168-3532187 None:intergenic 25.0%
! AAAATGAACATGAGAAATAG+TGG - chr1_3:3532237-3532256 Msa0097690:CDS 25.0%
!!! TCAGTCACTTTTTAAATTTC+TGG + chr1_3:3532336-3532355 None:intergenic 25.0%
!!! CCACTTTTAATTAATGTTTC+TGG + chr1_3:3532420-3532439 None:intergenic 25.0%
! CCAGAAACATTAATTAAAAG+TGG - chr1_3:3532417-3532436 Msa0097690:CDS 25.0%
!! TTTTTGCATATTTGTGATAG+TGG + chr1_3:3532659-3532678 None:intergenic 25.0%
!!! TTCTTCTTTTTTTCTGTGAT+TGG + chr1_3:3532964-3532983 None:intergenic 25.0%
!! TTTTCCAATAACAAACAACT+CGG + chr1_3:3533636-3533655 None:intergenic 25.0%
!! AACTTACAAGTCAATTTTGT+GGG - chr1_3:3533717-3533736 Msa0097690:intron 25.0%
!! ATACATGACTATTGAGTTTT+AGG + chr1_3:3533753-3533772 None:intergenic 25.0%
!! TGCTTGTGTATTCATTTTAA+TGG - chr1_3:3533906-3533925 Msa0097690:intron 25.0%
!!! GCTTGTGTATTCATTTTAAT+GGG - chr1_3:3533907-3533926 Msa0097690:intron 25.0%
!!! CATTTTAATGGGTATGATAT+AGG - chr1_3:3533918-3533937 Msa0097690:intron 25.0%
!! TTTTATGCTCTCTATTTTGT+AGG - chr1_3:3534134-3534153 Msa0097690:intron 25.0%
! TACTCCAAAAGATTTATTTG+AGG - chr1_3:3534206-3534225 Msa0097690:intron 25.0%
!! ACATCCTCAAATAAATCTTT+TGG + chr1_3:3534213-3534232 None:intergenic 25.0%
! CAAACTCATTCACAATATTA+AGG + chr1_3:3534286-3534305 None:intergenic 25.0%
! ATCATGATTCAGAAGAAAAT+AGG + chr1_3:3534449-3534468 None:intergenic 25.0%
!! TTAAGGCATATTTTACATGA+TGG - chr1_3:3535264-3535283 Msa0097690:intron 25.0%
! ATATGTGTGAAATGAACAAA+AGG + chr1_3:3535394-3535413 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG - chr1_3:3535549-3535568 Msa0097690:intron 25.0%
!! GGACAATATTTTATTGCAAA+TGG - chr1_3:3535570-3535589 Msa0097690:intron 25.0%
!! GATTCATATTTCACAGTTTT+TGG - chr1_3:3535951-3535970 Msa0097690:intron 25.0%
! ACTTCCTTATATAGTTCAAT+TGG - chr1_3:3536176-3536195 Msa0097690:CDS 25.0%
! ATCTCCAATTGAACTATATA+AGG + chr1_3:3536183-3536202 None:intergenic 25.0%
! TTGATATTATGTTTCCTTTC+AGG - chr1_3:3536455-3536474 Msa0097690:intron 25.0%
! TAATCATTGCAAAAAGGTTA+GGG + chr1_3:3537227-3537246 None:intergenic 25.0%
! CAATGAAATTTGAAGATTTG+TGG + chr1_3:3537424-3537443 None:intergenic 25.0%
! ATATAATGTTCTGGCAAATA+CGG - chr1_3:3537480-3537499 Msa0097690:five_prime_UTR 25.0%
!!! TTTTAGTTCTTTCAGTCAAA+TGG + chr1_3:3537523-3537542 None:intergenic 25.0%
!!! TTTTTTTTAAGATAGGGTGG+CGG - chr1_3:3522797-3522816 Msa0097690:three_prime_UTR 30.0%
TTTGATAAGCTCTTCAAGAT+AGG - chr1_3:3522855-3522874 Msa0097690:three_prime_UTR 30.0%
CTATAGTATAGGGACTAATT+CGG - chr1_3:3522935-3522954 Msa0097690:three_prime_UTR 30.0%
CCGATAAAAAACAAAGTGTA+AGG + chr1_3:3523436-3523455 None:intergenic 30.0%
! TATTTTCTTTATCCACGACA+AGG - chr1_3:3523506-3523525 Msa0097690:intron 30.0%
! ATTTTCTTTATCCACGACAA+GGG - chr1_3:3523507-3523526 Msa0097690:intron 30.0%
TTTCATAAAGAAAAAGGGGA+GGG + chr1_3:3523612-3523631 None:intergenic 30.0%
TCTTTATGAAACTGACTAGT+TGG - chr1_3:3523621-3523640 Msa0097690:intron 30.0%
ATAGATAAGACAAAGATTGG+AGG + chr1_3:3523697-3523716 None:intergenic 30.0%
! CATCTTTTTATCTGCAGTTT+CGG - chr1_3:3523831-3523850 Msa0097690:intron 30.0%
TGCCATATATTCAAACAAAC+AGG - chr1_3:3524050-3524069 Msa0097690:intron 30.0%
TGCATATGATTGTTTATGTG+AGG + chr1_3:3524115-3524134 None:intergenic 30.0%
CACATAAACAATCATATGCA+TGG - chr1_3:3524115-3524134 Msa0097690:CDS 30.0%
ACAAACTAGTAATCTACAAC+GGG + chr1_3:3524214-3524233 None:intergenic 30.0%
GACAAACTAGTAATCTACAA+CGG + chr1_3:3524215-3524234 None:intergenic 30.0%
!! AATTGTAAAGGATGGGTTAA+AGG + chr1_3:3524254-3524273 None:intergenic 30.0%
! AATGCTACTTGATTTGATCA+TGG - chr1_3:3524582-3524601 Msa0097690:intron 30.0%
CTAGTTAAAATTAAGTAGGG+GGG - chr1_3:3524757-3524776 Msa0097690:intron 30.0%
TAGTTAAAATTAAGTAGGGG+GGG - chr1_3:3524758-3524777 Msa0097690:intron 30.0%
GTCATGTTAAAAATTAGAGG+GGG - chr1_3:3524787-3524806 Msa0097690:intron 30.0%
!! TGACATTTTAACAAACCTCA+AGG - chr1_3:3524816-3524835 Msa0097690:intron 30.0%
!! GACATTTTAACAAACCTCAA+GGG - chr1_3:3524817-3524836 Msa0097690:intron 30.0%
AGAAAGAAACTAGAACGTAA+AGG - chr1_3:3525034-3525053 Msa0097690:intron 30.0%
!! ACTCAAAATAGGGCTATTTT+GGG + chr1_3:3525097-3525116 None:intergenic 30.0%
! AACTCAAAATAGGGCTATTT+TGG + chr1_3:3525098-3525117 None:intergenic 30.0%
!!! AATAGCCCTATTTTGAGTTT+TGG - chr1_3:3525099-3525118 Msa0097690:intron 30.0%
!!! ATAGCCCTATTTTGAGTTTT+GGG - chr1_3:3525100-3525119 Msa0097690:intron 30.0%
ATGAATCATTACGAGTCAAT+AGG - chr1_3:3525207-3525226 Msa0097690:intron 30.0%
TGAATCATTACGAGTCAATA+GGG - chr1_3:3525208-3525227 Msa0097690:intron 30.0%
TGAGCAGATAGGAAAAATTA+GGG - chr1_3:3525449-3525468 Msa0097690:intron 30.0%
GACAATGAAGTTAGATTATC+AGG - chr1_3:3525744-3525763 Msa0097690:intron 30.0%
ATAATAATCATCCACGAGTT+GGG + chr1_3:3525815-3525834 None:intergenic 30.0%
TATAATAATCATCCACGAGT+TGG + chr1_3:3525816-3525835 None:intergenic 30.0%
! ATTGCTTGTATACTAGTTTC+TGG + chr1_3:3525869-3525888 None:intergenic 30.0%
AAGCTCTTAGTATCAATTAG+AGG - chr1_3:3525895-3525914 Msa0097690:intron 30.0%
!!! TCAATTATTTGTTTTGCCCA+AGG - chr1_3:3525936-3525955 Msa0097690:CDS 30.0%
!!! CAATTATTTGTTTTGCCCAA+GGG - chr1_3:3525937-3525956 Msa0097690:CDS 30.0%
!!! AATTATTTGTTTTGCCCAAG+GGG - chr1_3:3525938-3525957 Msa0097690:CDS 30.0%
GAATGTGACTGTAAAAGAAT+TGG - chr1_3:3526003-3526022 Msa0097690:CDS 30.0%
!! AATTGGTGACTTTGTTGTTA+AGG - chr1_3:3526020-3526039 Msa0097690:intron 30.0%
AGAGTAGCTAATTTCTCAAT+AGG - chr1_3:3526072-3526091 Msa0097690:intron 30.0%
! TGAAAAAAGTTTCTGAAGAG+TGG + chr1_3:3526205-3526224 None:intergenic 30.0%
!!! ACTCTTCAGAAACTTTTTTC+AGG - chr1_3:3526204-3526223 Msa0097690:CDS 30.0%
! ATTACTACAACAAGAGTACA+AGG - chr1_3:3526593-3526612 Msa0097690:intron 30.0%
CATAAACCTTTCATGATCAT+TGG + chr1_3:3526787-3526806 None:intergenic 30.0%
CAATGATCATGAAAGGTTTA+TGG - chr1_3:3526785-3526804 Msa0097690:intron 30.0%
GTTAAAATTTCTCCTGACTT+GGG + chr1_3:3526861-3526880 None:intergenic 30.0%
TGTTAAAATTTCTCCTGACT+TGG + chr1_3:3526862-3526881 None:intergenic 30.0%
GCAAAAAAGAAACTAATAGG+TGG + chr1_3:3527152-3527171 Msa0097700:CDS 30.0%
TAAACACTGCATTCATAAGA+GGG + chr1_3:3527180-3527199 None:intergenic 30.0%
TTAAACACTGCATTCATAAG+AGG + chr1_3:3527181-3527200 None:intergenic 30.0%
TTTAATTAATGACACGGGAA+GGG + chr1_3:3527528-3527547 None:intergenic 30.0%
ATTTAATTAATGACACGGGA+AGG + chr1_3:3527529-3527548 None:intergenic 30.0%
TTGTAAAATTTCCGTTCAGT+TGG - chr1_3:3527707-3527726 Msa0097690:intron 30.0%
CTTCATTTCTCTCTTATATC+TGG - chr1_3:3528128-3528147 Msa0097690:intron 30.0%
! TTCTAAAAGTATGGCCTATT+TGG - chr1_3:3528310-3528329 Msa0097690:intron 30.0%
!! ATTGTTCACTTTTGCAATCT+TGG - chr1_3:3528456-3528475 Msa0097690:intron 30.0%
CTTGATTGGACAAGATATAA+AGG + chr1_3:3528507-3528526 None:intergenic 30.0%
TTTGGTATATGCAAATAAGC+TGG - chr1_3:3528734-3528753 Msa0097690:intron 30.0%
GGTAAGTATTCTTTATGTCA+TGG - chr1_3:3528755-3528774 Msa0097690:intron 30.0%
!!! CCTACCAAGTTTTTTAATAG+AGG + chr1_3:3528788-3528807 None:intergenic 30.0%
CCTCTATTAAAAAACTTGGT+AGG - chr1_3:3528785-3528804 Msa0097690:intron 30.0%
TAAAGCGGTAATAAAGATGA+AGG + chr1_3:3528837-3528856 None:intergenic 30.0%
!!! CCGCTTTATTTTACTCTTTT+AGG - chr1_3:3528849-3528868 Msa0097690:intron 30.0%
!! AAATGCATTTAAAGCGCTTT+TGG - chr1_3:3528879-3528898 Msa0097690:intron 30.0%
ACAATGAATGGAAAAACTGA+AGG + chr1_3:3528956-3528975 None:intergenic 30.0%
GTTCACTTTATGCAAAATGA+AGG + chr1_3:3529150-3529169 None:intergenic 30.0%
TTGTAATGAGTAACTAGTGA+AGG + chr1_3:3529389-3529408 None:intergenic 30.0%
AAAATTATACCTCCATCTTG+TGG + chr1_3:3529449-3529468 None:intergenic 30.0%
!! TGTGTTTTCTTGTTTGTGTT+AGG - chr1_3:3529486-3529505 Msa0097690:intron 30.0%
TTTATTTGAAAGCTACATGG+TGG - chr1_3:3529626-3529645 Msa0097690:intron 30.0%
TACTTGAATATAATGAAGGG+AGG - chr1_3:3529901-3529920 Msa0097690:intron 30.0%
TAGTCAAGCTAAATACTGTT+TGG + chr1_3:3529976-3529995 None:intergenic 30.0%
CTGTAAGTAAATGTGTTTCA+AGG - chr1_3:3530026-3530045 Msa0097690:intron 30.0%
! TTTTCTATTGAGGGTCAAAT+AGG - chr1_3:3530394-3530413 Msa0097690:intron 30.0%
TGAGCTTATTCTGAATAAAC+TGG + chr1_3:3530644-3530663 None:intergenic 30.0%
AAAGGTTCACTAATAGACTT+CGG + chr1_3:3530725-3530744 None:intergenic 30.0%
!! TAGATTTTAGTGGGTATAGA+TGG - chr1_3:3530755-3530774 Msa0097690:intron 30.0%
! GAATATTAGCTATTTCAGTG+TGG - chr1_3:3530781-3530800 Msa0097690:intron 30.0%
TTTCATCAAATGTTGATACG+AGG - chr1_3:3530817-3530836 Msa0097690:intron 30.0%
GAATTATAATCTCCATCCAT+GGG + chr1_3:3530853-3530872 None:intergenic 30.0%
AGAATTATAATCTCCATCCA+TGG + chr1_3:3530854-3530873 None:intergenic 30.0%
TTATAATTCTCAGCTAGCAA+TGG - chr1_3:3530864-3530883 Msa0097690:CDS 30.0%
TATAATTCTCAGCTAGCAAT+GGG - chr1_3:3530865-3530884 Msa0097690:CDS 30.0%
TTAGGCTAAAATTCATGTCT+AGG - chr1_3:3531026-3531045 Msa0097690:intron 30.0%
CATTTGTATAGCTAATCTGA+TGG - chr1_3:3531174-3531193 Msa0097690:intron 30.0%
TAAACCAAAATCCAAGTTCA+TGG - chr1_3:3531218-3531237 Msa0097690:intron 30.0%
!!! TTTTATTTTGGCCATGAACT+TGG + chr1_3:3531232-3531251 None:intergenic 30.0%
CAGTAAATCATAATGGCAAA+AGG - chr1_3:3531256-3531275 Msa0097690:CDS 30.0%
CAAATGCATAAATTGAATGG+GGG + chr1_3:3531436-3531455 None:intergenic 30.0%
CCAAATGCATAAATTGAATG+GGG + chr1_3:3531437-3531456 None:intergenic 30.0%
CCCAAATGCATAAATTGAAT+GGG + chr1_3:3531438-3531457 None:intergenic 30.0%
CCCATTCAATTTATGCATTT+GGG - chr1_3:3531435-3531454 Msa0097690:CDS 30.0%
ACCCAAATGCATAAATTGAA+TGG + chr1_3:3531439-3531458 None:intergenic 30.0%
TTCAATTTATGCATTTGGGT+CGG - chr1_3:3531439-3531458 Msa0097690:CDS 30.0%
TACTGTCCAAAACTATTTAC+TGG - chr1_3:3531512-3531531 Msa0097690:intron 30.0%
!!! TATTTACTGGTTTTTGTGGA+CGG - chr1_3:3531525-3531544 Msa0097690:intron 30.0%
AGCAGAATATAGGAAATTTC+TGG - chr1_3:3531935-3531954 Msa0097690:CDS 30.0%
!! CATTTTAGGTGAATAGTCAT+TGG - chr1_3:3532068-3532087 Msa0097690:intron 30.0%
! TGTTCCAGTGTTATTAATAG+CGG - chr1_3:3532188-3532207 Msa0097690:CDS 30.0%
AATAAAGCATGATGCATTGT+TGG - chr1_3:3532388-3532407 Msa0097690:CDS 30.0%
AGTGGTTATTGCTTACATAT+TGG + chr1_3:3532641-3532660 None:intergenic 30.0%
ATTAGAGAATCAGTAGAGAA+AGG - chr1_3:3532995-3533014 Msa0097690:intron 30.0%
GAAATTAGAACCAAGAAGAA+GGG + chr1_3:3533084-3533103 None:intergenic 30.0%
TGAAATTAGAACCAAGAAGA+AGG + chr1_3:3533085-3533104 None:intergenic 30.0%
!! TCTTCTTGGTTCTAATTTCA+TGG - chr1_3:3533085-3533104 Msa0097690:intron 30.0%
ATTATACTTCATCAAGGACA+AGG + chr1_3:3533264-3533283 None:intergenic 30.0%
ATGTTACTACTATAAACGTG+TGG + chr1_3:3533320-3533339 None:intergenic 30.0%
!! AATACCGAGTTGTTTGTTAT+TGG - chr1_3:3533629-3533648 Msa0097690:intron 30.0%
! GCCTATTTAGAGCTTATAAA+AGG - chr1_3:3533686-3533705 Msa0097690:intron 30.0%
!!! GCCTTTTATAAGCTCTAAAT+AGG + chr1_3:3533690-3533709 None:intergenic 30.0%
! CAACTTACAAGTCAATTTTG+TGG - chr1_3:3533716-3533735 Msa0097690:intron 30.0%
AAACTCAATAGTCATGTATG+AGG - chr1_3:3533754-3533773 Msa0097690:CDS 30.0%
AACTCAATAGTCATGTATGA+GGG - chr1_3:3533755-3533774 Msa0097690:CDS 30.0%
! CTATGTACTGATACTAACTT+TGG - chr1_3:3533780-3533799 Msa0097690:CDS 30.0%
AAGGTAGTAAGAGATTTAGT+TGG - chr1_3:3534054-3534073 Msa0097690:intron 30.0%
!!! TAAATCTTTTGGAGTAGAAC+CGG + chr1_3:3534202-3534221 None:intergenic 30.0%
! CTTTGAAAATCTTGAAAAGC+AGG - chr1_3:3534233-3534252 Msa0097690:intron 30.0%
TTTATCACTGTTAGTTGACT+TGG - chr1_3:3534522-3534541 Msa0097690:intron 30.0%
TAAGCTACAGATAAAACACA+AGG + chr1_3:3534808-3534827 None:intergenic 30.0%
AGCTACTTGCAAAACAATAT+CGG - chr1_3:3534934-3534953 Msa0097690:intron 30.0%
AATATCGGAGATCAATTTGA+AGG - chr1_3:3534949-3534968 Msa0097690:intron 30.0%
!!! GTCCATTTCAATTCCTTTTT+TGG - chr1_3:3534994-3535013 Msa0097690:intron 30.0%
AGCCAAAAAAGGAATTGAAA+TGG + chr1_3:3534999-3535018 None:intergenic 30.0%
GAAATTGATATTGAGCTCTT+CGG + chr1_3:3535069-3535088 None:intergenic 30.0%
ATTCTTCTCTTCTTCTTTCT+TGG + chr1_3:3535225-3535244 None:intergenic 30.0%
ACAAAAGGCTCACATATTAT+GGG + chr1_3:3535379-3535398 None:intergenic 30.0%
AACAAAAGGCTCACATATTA+TGG + chr1_3:3535380-3535399 None:intergenic 30.0%
TCCTTGTCAAGTGTTAAATT+GGG - chr1_3:3535460-3535479 Msa0097690:intron 30.0%
! GTGAAATGAGTCAGTTATTT+TGG - chr1_3:3535548-3535567 Msa0097690:intron 30.0%
TTTGTCTCCTTATAATGTCA+TGG - chr1_3:3535649-3535668 Msa0097690:intron 30.0%
AGTCAATCCATGACATTATA+AGG + chr1_3:3535659-3535678 None:intergenic 30.0%
! ATGGATTGACTTCAAAAACA+TGG - chr1_3:3535668-3535687 Msa0097690:intron 30.0%
ACAATATTAAATAGGCCAAC+TGG + chr1_3:3535742-3535761 None:intergenic 30.0%
GTGAAATATGAATCAGATCA+TGG + chr1_3:3535945-3535964 None:intergenic 30.0%
!!! TTTCACAGTTTTTGGCTAAA+TGG - chr1_3:3535959-3535978 Msa0097690:intron 30.0%
GGAATACATTACATACTTGA+AGG - chr1_3:3536229-3536248 Msa0097690:CDS 30.0%
!! ACTTTGTTTGTTTCACCTTT+TGG - chr1_3:3536299-3536318 Msa0097690:five_prime_UTR 30.0%
!!! AGTTTTATTGCCAATTGCAA+TGG - chr1_3:3536360-3536379 Msa0097690:intron 30.0%
TTTCACTAATCCATTGCAAT+TGG + chr1_3:3536373-3536392 None:intergenic 30.0%
!! ATTGCAATGGATTAGTGAAA+TGG - chr1_3:3536373-3536392 Msa0097690:intron 30.0%
TATTCCAAAACAAACTCAGT+GGG - chr1_3:3536500-3536519 Msa0097690:intron 30.0%
! ATAATTTTTGCAGGCCAAAA+AGG - chr1_3:3536666-3536685 Msa0097690:intron 30.0%
! TTCTCTTTCTTTCTCCTTTT+TGG + chr1_3:3536683-3536702 None:intergenic 30.0%
GAAAGAAAAACGTAAAGAGA+AGG - chr1_3:3536705-3536724 Msa0097690:intron 30.0%
AGAGGAGAAGAAAAAAGAAA+AGG - chr1_3:3536837-3536856 Msa0097690:intron 30.0%
CTAATCATTGCAAAAAGGTT+AGG + chr1_3:3537228-3537247 None:intergenic 30.0%
ATGAAAAGTAGAAGGATTGT+TGG + chr1_3:3537298-3537317 None:intergenic 30.0%
TTACACAATCCTAAATTCAC+AGG + chr1_3:3537328-3537347 None:intergenic 30.0%
CTTTATACCAAGAGTAATGT+AGG - chr1_3:3537398-3537417 Msa0097690:intron 30.0%
TGAAGAGCTTATCAAAACAG+TGG + chr1_3:3522851-3522870 None:intergenic 35.0%
AAGCTCTTCAAGATAGGTTA+TGG - chr1_3:3522861-3522880 Msa0097690:three_prime_UTR 35.0%
TCATAATCTGACAAGAGAAG+TGG + chr1_3:3523203-3523222 None:intergenic 35.0%
TATTACAAGGGATATGCACA+TGG - chr1_3:3523278-3523297 Msa0097690:CDS 35.0%
ATTACAAGGGATATGCACAT+GGG - chr1_3:3523279-3523298 Msa0097690:CDS 35.0%
GTTTCATAAAGAAAAAGGGG+AGG + chr1_3:3523613-3523632 None:intergenic 35.0%
!! TGACTAGTTGGACTTTGTTT+TGG - chr1_3:3523633-3523652 Msa0097690:intron 35.0%
!!! GACTAGTTGGACTTTGTTTT+GGG - chr1_3:3523634-3523653 Msa0097690:intron 35.0%
TTCTCAACAAATGCAACAGT+TGG - chr1_3:3523973-3523992 Msa0097690:CDS 35.0%
GGCCTGTTTGTTTGAATATA+TGG + chr1_3:3524055-3524074 None:intergenic 35.0%
CTCAATCTCTATACACTGTA+CGG - chr1_3:3524161-3524180 Msa0097690:intron 35.0%
TCAATCTCTATACACTGTAC+GGG - chr1_3:3524162-3524181 Msa0097690:intron 35.0%
TTTCAGTTCACACCATCTTA+TGG - chr1_3:3524274-3524293 Msa0097690:CDS 35.0%
GTGATTCAGATTTGGAAGAA+AGG - chr1_3:3524637-3524656 Msa0097690:intron 35.0%
CATTGAAATTTAAGTAGGGG+AGG - chr1_3:3524727-3524746 Msa0097690:intron 35.0%
AGTTAAAATTAAGTAGGGGG+GGG - chr1_3:3524759-3524778 Msa0097690:intron 35.0%
!! ATTTTAACAAACCTCAAGGG+AGG - chr1_3:3524820-3524839 Msa0097690:intron 35.0%
ACTGCACTAACTAAAACTTG+AGG - chr1_3:3525162-3525181 Msa0097690:intron 35.0%
CTGCACTAACTAAAACTTGA+GGG - chr1_3:3525163-3525182 Msa0097690:intron 35.0%
ACTAACTAAAACTTGAGGGA+GGG - chr1_3:3525167-3525186 Msa0097690:intron 35.0%
!!! AGGAGTTTTGAATGTGAGAT+CGG - chr1_3:3525234-3525253 Msa0097690:CDS 35.0%
TTGAAGGAAAAGGGATAGAT+TGG - chr1_3:3525264-3525283 Msa0097690:CDS 35.0%
! ATAGATTGGTTAGGCATGTT+TGG - chr1_3:3525278-3525297 Msa0097690:CDS 35.0%
! TAGATTGGTTAGGCATGTTT+GGG - chr1_3:3525279-3525298 Msa0097690:CDS 35.0%
GTGAGCAGATAGGAAAAATT+AGG - chr1_3:3525448-3525467 Msa0097690:intron 35.0%
GGAAAAATTAGGGTTCACTT+AGG - chr1_3:3525459-3525478 Msa0097690:intron 35.0%
CATGAAAAATCGCAAGAACA+TGG + chr1_3:3525554-3525573 None:intergenic 35.0%
! CATGTTCTTGCGATTTTTCA+TGG - chr1_3:3525552-3525571 Msa0097690:intron 35.0%
ATCGCATCTAAGTAGGATAA+TGG + chr1_3:3525586-3525605 None:intergenic 35.0%
! AGAATTGATTCAACACAGAG+AGG - chr1_3:3525722-3525741 Msa0097690:intron 35.0%
ACTAAGGAAACTCGATATAC+TGG + chr1_3:3525839-3525858 None:intergenic 35.0%
TGAGAAATTAGCTACTCTTG+TGG + chr1_3:3526070-3526089 None:intergenic 35.0%
CATCTCAAATATATGAGCGA+AGG + chr1_3:3526310-3526329 None:intergenic 35.0%
! GCATGAAATTTTACCTCAAG+AGG + chr1_3:3526655-3526674 None:intergenic 35.0%
AATCCAACTGGTATCTAGTA+TGG - chr1_3:3526737-3526756 Msa0097690:intron 35.0%
AATCCATACTAGATACCAGT+TGG + chr1_3:3526743-3526762 None:intergenic 35.0%
CATTGGAAACGTAGTAGAAA+TGG + chr1_3:3526770-3526789 None:intergenic 35.0%
ACGTTTCCAATGATCATGAA+AGG - chr1_3:3526778-3526797 Msa0097690:intron 35.0%
! TGGAAGTACATGCACATAAA+AGG + chr1_3:3526820-3526839 None:intergenic 35.0%
GGATGATATCTACAAATCAG+TGG + chr1_3:3526840-3526859 None:intergenic 35.0%
! CAGAACCAATCTCACATTTT+AGG + chr1_3:3526971-3526990 Msa0097700:intron 35.0%
TCTGCAATGCCATTAATTGA+TGG - chr1_3:3526987-3527006 Msa0097690:intron 35.0%
AGGAGTCAACCATCAATTAA+TGG + chr1_3:3526999-3527018 Msa0097700:CDS 35.0%
AATTACTAAAGGAACGGGAA+TGG + chr1_3:3527023-3527042 Msa0097700:CDS 35.0%
GTGTGTGTGTGTAAGATATA+CGG - chr1_3:3527063-3527082 Msa0097690:intron 35.0%
AAACACTGCATTCATAAGAG+GGG + chr1_3:3527179-3527198 None:intergenic 35.0%
TCAAAACACACTAATTCTCC+TGG - chr1_3:3527378-3527397 Msa0097690:intron 35.0%
AAAGAGTTCACTTCTTCAGA+GGG - chr1_3:3527434-3527453 Msa0097690:intron 35.0%
CTGCAGGTATTATTACAACA+AGG - chr1_3:3527578-3527597 Msa0097690:intron 35.0%
AGAAATTGTCGGCCAAATAA+TGG + chr1_3:3527680-3527699 None:intergenic 35.0%
GCACATAAAACTATTAGCCA+GGG - chr1_3:3527741-3527760 Msa0097690:intron 35.0%
TAAAACTATTAGCCAGGGAA+TGG - chr1_3:3527746-3527765 Msa0097690:intron 35.0%
! TTGATTTTCAACACTGTACC+GGG + chr1_3:3528191-3528210 None:intergenic 35.0%
! CTTGATTTTCAACACTGTAC+CGG + chr1_3:3528192-3528211 None:intergenic 35.0%
AATACCTCCATATCTTGAAG+AGG + chr1_3:3528247-3528266 None:intergenic 35.0%
TGTTAGGATATATACACAGC+AGG + chr1_3:3528341-3528360 None:intergenic 35.0%
CGTGCATGAATGTTTATGTT+AGG + chr1_3:3528357-3528376 None:intergenic 35.0%
! ACCAATTAAAGCCTTATCCA+TGG + chr1_3:3528602-3528621 None:intergenic 35.0%
AATTACCTTGCAACTCTTGT+AGG - chr1_3:3528635-3528654 Msa0097690:intron 35.0%
! AACCAATGATGGTGAAACTT+TGG - chr1_3:3528716-3528735 Msa0097690:intron 35.0%
TACCAAAGTTTCACCATCAT+TGG + chr1_3:3528721-3528740 None:intergenic 35.0%
CTGTGAATGTTCATTCTGAT+TGG - chr1_3:3528905-3528924 Msa0097690:intron 35.0%
TATAATGCCCTGAAAACACT+TGG - chr1_3:3529048-3529067 Msa0097690:intron 35.0%
TGAAGGATATGATGTAAGGT+CGG + chr1_3:3529133-3529152 None:intergenic 35.0%
ACATCTTTGTGAATTCTTCG+CGG + chr1_3:3529295-3529314 None:intergenic 35.0%
!!! ATTCTTTTTTCAGGAGTGCA+AGG - chr1_3:3529411-3529430 Msa0097690:intron 35.0%
! GTTGGTGAGAAATTTCAAGA+TGG + chr1_3:3529522-3529541 None:intergenic 35.0%
!! TTGCTGATTCAGTAAATGGT+TGG + chr1_3:3529540-3529559 None:intergenic 35.0%
!! AGCTTTGCTGATTCAGTAAA+TGG + chr1_3:3529544-3529563 None:intergenic 35.0%
CTGTTGAAAGAGTAAGAGAT+CGG - chr1_3:3529598-3529617 Msa0097690:intron 35.0%
TGTTGAAAGAGTAAGAGATC+GGG - chr1_3:3529599-3529618 Msa0097690:intron 35.0%
ATGATATGCCATGCTCAAAA+AGG + chr1_3:3529699-3529718 None:intergenic 35.0%
TTGAGCATGGCATATCATTT+AGG - chr1_3:3529701-3529720 Msa0097690:intron 35.0%
ATGAGACTATAAGAGCTAAC+AGG + chr1_3:3529853-3529872 None:intergenic 35.0%
! TTAATTTTCCGTCACATTGC+AGG - chr1_3:3530187-3530206 Msa0097690:intron 35.0%
AGTATTATCCTGCAATGTGA+CGG + chr1_3:3530198-3530217 None:intergenic 35.0%
TATCAAAGATGTTGCAGAAG+AGG + chr1_3:3530270-3530289 None:intergenic 35.0%
ACCTATCAAGCTAATCAAAG+TGG + chr1_3:3530295-3530314 None:intergenic 35.0%
!! TTTGATTAGCTTGATAGGTC+TGG - chr1_3:3530296-3530315 Msa0097690:intron 35.0%
!! TTGATTAGCTTGATAGGTCT+GGG - chr1_3:3530297-3530316 Msa0097690:intron 35.0%
ATCTTTACCAGCAAGAATGA+TGG - chr1_3:3530322-3530341 Msa0097690:intron 35.0%
TCTTTACCAGCAAGAATGAT+GGG - chr1_3:3530323-3530342 Msa0097690:intron 35.0%
! TGGGAACCATAATTTTGTTG+TGG - chr1_3:3530342-3530361 Msa0097690:intron 35.0%
TGAGGGTCAAATAGGATTAA+CGG - chr1_3:3530402-3530421 Msa0097690:intron 35.0%
AGACCAGTATAAAGACAAGT+TGG + chr1_3:3530487-3530506 None:intergenic 35.0%
TTATAGTTAGTAAAGCTGGG+CGG + chr1_3:3530567-3530586 None:intergenic 35.0%
!! TTTTAGTGGGTATAGATGGA+CGG - chr1_3:3530759-3530778 Msa0097690:intron 35.0%
GTACTCGACACAAATTTAGT+AGG + chr1_3:3530894-3530913 None:intergenic 35.0%
!! TCCTTATTGTTTTGTAGTCC+AGG - chr1_3:3531314-3531333 Msa0097690:intron 35.0%
ACCTGGACTACAAAACAATA+AGG + chr1_3:3531318-3531337 None:intergenic 35.0%
CCCCATTCAATTTATGCATT+TGG - chr1_3:3531434-3531453 Msa0097690:CDS 35.0%
TCAATTTATGCATTTGGGTC+GGG - chr1_3:3531440-3531459 Msa0097690:CDS 35.0%
TAGAAACTTCGAGGAATAGA+TGG + chr1_3:3531618-3531637 None:intergenic 35.0%
TCTATTCCTCGAAGTTTCTA+TGG - chr1_3:3531618-3531637 Msa0097690:intron 35.0%
GTGGCTGCTTATAATGTTAA+TGG - chr1_3:3531640-3531659 Msa0097690:intron 35.0%
TGACCACTTACTATTTGATC+TGG - chr1_3:3531664-3531683 Msa0097690:intron 35.0%
GACCACTTACTATTTGATCT+GGG - chr1_3:3531665-3531684 Msa0097690:intron 35.0%
AACCCAGATCAAATAGTAAG+TGG + chr1_3:3531670-3531689 None:intergenic 35.0%
ATTCCAAAAGAGTGAACATC+AGG - chr1_3:3531703-3531722 Msa0097690:intron 35.0%
TTCCAAAAGAGTGAACATCA+GGG - chr1_3:3531704-3531723 Msa0097690:intron 35.0%
TATATTCTGCTAAATTCCGC+CGG + chr1_3:3531926-3531945 None:intergenic 35.0%
ATGTACCTTCACAAAATCAC+AGG + chr1_3:3531964-3531983 None:intergenic 35.0%
TAGTCATTGGCGAAAAATTC+AGG - chr1_3:3532081-3532100 Msa0097690:intron 35.0%
ATTGGCGAAAAATTCAGGAT+CGG - chr1_3:3532086-3532105 Msa0097690:intron 35.0%
CAATCCGCTATTAATAACAC+TGG + chr1_3:3532195-3532214 None:intergenic 35.0%
TATGAAGTGATGAGAGAAGA+TGG - chr1_3:3532469-3532488 Msa0097690:intron 35.0%
TAAAATCCACAACCCAGATA+AGG + chr1_3:3532527-3532546 None:intergenic 35.0%
! TTATCTGGGTTGTGGATTTT+AGG - chr1_3:3532526-3532545 Msa0097690:intron 35.0%
! TATCTGGGTTGTGGATTTTA+GGG - chr1_3:3532527-3532546 Msa0097690:intron 35.0%
TAGTGTATCAGCTTTCTTTG+CGG - chr1_3:3532712-3532731 Msa0097690:intron 35.0%
AAAAAACATTTGGTCGGACA+CGG - chr1_3:3532906-3532925 Msa0097690:intron 35.0%
!! AGTGGTTGATTTTCTCAATG+TGG - chr1_3:3533374-3533393 Msa0097690:intron 35.0%
ATCTAAAAAAACCCAGGACA+CGG + chr1_3:3533540-3533559 None:intergenic 35.0%
GGAACAAAAAAGGATACAGA+AGG - chr1_3:3533838-3533857 Msa0097690:intron 35.0%
CTAGAAGAACATATTGCTGA+TGG - chr1_3:3533991-3534010 Msa0097690:intron 35.0%
TTCTTACTGCTAAAACACAG+TGG - chr1_3:3534016-3534035 Msa0097690:intron 35.0%
TGGTCACAGTGATATTTAGT+TGG - chr1_3:3534074-3534093 Msa0097690:intron 35.0%
CAATGAAAGCTGGCAAAATA+TGG - chr1_3:3534100-3534119 Msa0097690:intron 35.0%
GCTCTATGTAAGTAAGTTGT+TGG - chr1_3:3534350-3534369 Msa0097690:intron 35.0%
!!! GTTGTTGGTTTACTGCTTTT+CGG - chr1_3:3534365-3534384 Msa0097690:intron 35.0%
AAATACTGATGTAGTCGCTA+CGG + chr1_3:3534885-3534904 None:intergenic 35.0%
TATGTTTCAGGAGCCAAAAA+AGG + chr1_3:3535010-3535029 None:intergenic 35.0%
ATTAGAAGGCAAAACAATGC+AGG - chr1_3:3535110-3535129 Msa0097690:intron 35.0%
TTAGAAGGCAAAACAATGCA+GGG - chr1_3:3535111-3535130 Msa0097690:intron 35.0%
GTCCTTGTCAAGTGTTAAAT+TGG - chr1_3:3535459-3535478 Msa0097690:intron 35.0%
TCCCAATTTAACACTTGACA+AGG + chr1_3:3535464-3535483 None:intergenic 35.0%
!! ATGGCTCAGTTATTTTGTGA+CGG - chr1_3:3535589-3535608 Msa0097690:intron 35.0%
! GAAGAAACATCTCTTTGAAG+AGG - chr1_3:3535709-3535728 Msa0097690:intron 35.0%
AGAGTTATTAGAGAGAGCTA+AGG - chr1_3:3535829-3535848 Msa0097690:CDS 35.0%
AGTTAGTAAAGTCATCAGCA+AGG + chr1_3:3535889-3535908 None:intergenic 35.0%
TATTACTTCTTCAACATGGG+AGG - chr1_3:3536022-3536041 Msa0097690:CDS 35.0%
GAAGGAAAAAGCTAAAGAGA+AGG - chr1_3:3536247-3536266 Msa0097690:CDS 35.0%
AGGTTGTGAACAAAACCAAA+AGG + chr1_3:3536317-3536336 None:intergenic 35.0%
!!! TTTTGGTTTTGTTCACAACC+TGG - chr1_3:3536316-3536335 Msa0097690:five_prime_UTR 35.0%
AAATTGCAGCAGATTAAACC+AGG + chr1_3:3536337-3536356 None:intergenic 35.0%
! GTAAGAAGTATGATCCTGAA+AGG + chr1_3:3536472-3536491 None:intergenic 35.0%
CTATTCCAAAACAAACTCAG+TGG - chr1_3:3536499-3536518 Msa0097690:intron 35.0%
ATTCCAAAACAAACTCAGTG+GGG - chr1_3:3536501-3536520 Msa0097690:intron 35.0%
TCTAGTGTAGCTTAGAGATT+AGG - chr1_3:3536555-3536574 Msa0097690:intron 35.0%
GATAAGGTAAACCAAATGCA+GGG + chr1_3:3536622-3536641 None:intergenic 35.0%
AGATAAGGTAAACCAAATGC+AGG + chr1_3:3536623-3536642 None:intergenic 35.0%
! TGCATTTGGTTTACCTTATC+TGG - chr1_3:3536622-3536641 Msa0097690:intron 35.0%
! GCATTTGGTTTACCTTATCT+GGG - chr1_3:3536623-3536642 Msa0097690:intron 35.0%
! CATTTGGTTTACCTTATCTG+GGG - chr1_3:3536624-3536643 Msa0097690:intron 35.0%
AGAGAAGGAGAAAAAAGAGA+AGG - chr1_3:3536720-3536739 Msa0097690:intron 35.0%
AAGAGAGAAAACATCGAAGA+AGG - chr1_3:3536863-3536882 Msa0097690:intron 35.0%
! GGATTCTGAAAAAGATGAGA+AGG - chr1_3:3536909-3536928 Msa0097690:intron 35.0%
TAGGCATAAAAGACACAAGA+GGG - chr1_3:3537113-3537132 Msa0097690:intron 35.0%
CAATATTCTCCAAAAGATGC+AGG + chr1_3:3537264-3537283 None:intergenic 35.0%
!! TGTTCAGAGTTGTTGTTTGC+GGG + chr1_3:3522645-3522664 None:intergenic 40.0%
!! CTGTTCAGAGTTGTTGTTTG+CGG + chr1_3:3522646-3522665 None:intergenic 40.0%
ACAGCAAGAAAGAACAGAAG+CGG - chr1_3:3522662-3522681 Msa0097690:three_prime_UTR 40.0%
AGAGCTTATCAAAACAGTGG+CGG + chr1_3:3522848-3522867 None:intergenic 40.0%
TCGGAGAGAGTGATATTTCA+CGG - chr1_3:3522954-3522973 Msa0097690:exon 40.0%
TATTTCACGGGACCAAATTG+AGG - chr1_3:3522967-3522986 Msa0097690:exon 40.0%
ATTTCACGGGACCAAATTGA+GGG - chr1_3:3522968-3522987 Msa0097690:CDS 40.0%
! TTAGTGACTGACTCTGTTGT+AGG - chr1_3:3523046-3523065 Msa0097690:CDS 40.0%
AACTGTCACTCTCTCCAAAT+TGG + chr1_3:3523089-3523108 None:intergenic 40.0%
AAGGAAGGATGACATGAAGA+TGG + chr1_3:3523417-3523436 None:intergenic 40.0%
ACTAGAGCTGATAGATTGAG+GGG + chr1_3:3523567-3523586 None:intergenic 40.0%
GACTAGAGCTGATAGATTGA+GGG + chr1_3:3523568-3523587 None:intergenic 40.0%
TAAAGAAAAAGGGGAGGGTT+TGG + chr1_3:3523607-3523626 None:intergenic 40.0%
TGTGAAGTCATGGGAACAAA+TGG + chr1_3:3523884-3523903 None:intergenic 40.0%
CCGAATTGTTGTGAAGTCAT+GGG + chr1_3:3523893-3523912 None:intergenic 40.0%
CCCATGACTTCACAACAATT+CGG - chr1_3:3523890-3523909 Msa0097690:intron 40.0%
TCCGAATTGTTGTGAAGTCA+TGG + chr1_3:3523894-3523913 None:intergenic 40.0%
AATTGCTGACCTTGAATAGC+AGG + chr1_3:3523947-3523966 None:intergenic 40.0%
! TGATGATGAAACAGGATGAC+CGG + chr1_3:3524017-3524036 None:intergenic 40.0%
TCATCCTGTTTCATCATCAC+AGG - chr1_3:3524018-3524037 Msa0097690:intron 40.0%
CATCCTGTTTCATCATCACA+GGG - chr1_3:3524019-3524038 Msa0097690:intron 40.0%
! ATACCCTGTGATGATGAAAC+AGG + chr1_3:3524025-3524044 None:intergenic 40.0%
ACAGTGTATAGAGATTGAGG+AGG + chr1_3:3524160-3524179 None:intergenic 40.0%
CGTACAGTGTATAGAGATTG+AGG + chr1_3:3524163-3524182 None:intergenic 40.0%
AACTAGTAATCTACAACGGG+AGG + chr1_3:3524211-3524230 None:intergenic 40.0%
CCAAATCTGAATCACCATCT+TGG + chr1_3:3524632-3524651 None:intergenic 40.0%
CCAAGATGGTGATTCAGATT+TGG - chr1_3:3524629-3524648 Msa0097690:intron 40.0%
CAGATTTGGAAGAAAGGAAG+TGG - chr1_3:3524643-3524662 Msa0097690:intron 40.0%
GCAGTGTTAAGCTAGTAAAG+AGG - chr1_3:3524695-3524714 Msa0097690:intron 40.0%
TAACTTCTCTGCTGCATCTT+GGG + chr1_3:3525060-3525079 None:intergenic 40.0%
ATAACTTCTCTGCTGCATCT+TGG + chr1_3:3525061-3525080 None:intergenic 40.0%
CACTAACTAAAACTTGAGGG+AGG - chr1_3:3525166-3525185 Msa0097690:intron 40.0%
ATCATTACGAGTCAATAGGG+AGG - chr1_3:3525211-3525230 Msa0097690:intron 40.0%
!!! AGTTTTGAATGTGAGATCGG+AGG - chr1_3:3525237-3525256 Msa0097690:CDS 40.0%
!! GTTTTGAATGTGAGATCGGA+GGG - chr1_3:3525238-3525257 Msa0097690:CDS 40.0%
!! GGAGGGTATTTGAAGGAAAA+GGG - chr1_3:3525255-3525274 Msa0097690:CDS 40.0%
! GGAAAAGGGATAGATTGGTT+AGG - chr1_3:3525269-3525288 Msa0097690:CDS 40.0%
AAAGAGAGTTGCAGTTTGTG+AGG - chr1_3:3525326-3525345 Msa0097690:intron 40.0%
AGTTGCAGTTTGTGAGGATA+GGG - chr1_3:3525332-3525351 Msa0097690:intron 40.0%
GGGGGTTCACAAAAAAACTA+CGG + chr1_3:3525492-3525511 None:intergenic 40.0%
AGAAACATGCAATGAAGCTG+GGG + chr1_3:3525511-3525530 None:intergenic 40.0%
CAGAAACATGCAATGAAGCT+GGG + chr1_3:3525512-3525531 None:intergenic 40.0%
TCTTCGTCATCTCACAACAA+TGG + chr1_3:3525673-3525692 None:intergenic 40.0%
CGAAGAACAGAAATTGACAC+AGG - chr1_3:3525687-3525706 Msa0097690:intron 40.0%
! CCAACTCAACTAAGTGTTGT+GGG - chr1_3:3525785-3525804 Msa0097690:intron 40.0%
!! AGTTTCTGGTGAGATCACTA+AGG + chr1_3:3525855-3525874 None:intergenic 40.0%
! TAAGGTAGTCATGTCGTTTG+AGG - chr1_3:3526038-3526057 Msa0097690:intron 40.0%
CCTACTCTTCCTTACAAAAC+CGG - chr1_3:3526162-3526181 Msa0097690:CDS 40.0%
! TCCTTACAAAACCGGCTTAA+AGG - chr1_3:3526170-3526189 Msa0097690:CDS 40.0%
!! ACCTTTAAGCCGGTTTTGTA+AGG + chr1_3:3526174-3526193 None:intergenic 40.0%
AGAGTACAAGGCAATCTAGT+TGG - chr1_3:3526605-3526624 Msa0097690:intron 40.0%
GAGTACAAGGCAATCTAGTT+GGG - chr1_3:3526606-3526625 Msa0097690:intron 40.0%
AATGTTGCGTTCAATCCAAC+TGG - chr1_3:3526725-3526744 Msa0097690:intron 40.0%
TGTAGATATCATCCCAAGTC+AGG - chr1_3:3526846-3526865 Msa0097690:intron 40.0%
GAAAGAGTTCACTTCTTCAG+AGG - chr1_3:3527433-3527452 Msa0097690:intron 40.0%
AGGTTACTCAGCAATCAGTA+TGG - chr1_3:3527598-3527617 Msa0097690:intron 40.0%
GACAATACCAGAAGAACTCA+AGG - chr1_3:3527620-3527639 Msa0097690:intron 40.0%
CCATATACCTTGAGTTCTTC+TGG + chr1_3:3527630-3527649 None:intergenic 40.0%
CCAGAAGAACTCAAGGTATA+TGG - chr1_3:3527627-3527646 Msa0097690:intron 40.0%
!!! TAGTTTTATGTGCCTGCTCA+CGG + chr1_3:3527734-3527753 None:intergenic 40.0%
GGCACATAAAACTATTAGCC+AGG - chr1_3:3527740-3527759 Msa0097690:intron 40.0%
!! TCCAACACTTTGAGACCTAA+TGG - chr1_3:3527846-3527865 Msa0097690:intron 40.0%
ACCATTAGGTCTCAAAGTGT+TGG + chr1_3:3527850-3527869 None:intergenic 40.0%
CAACTGGTGTAACAGAAGAT+GGG + chr1_3:3527884-3527903 None:intergenic 40.0%
ACAACTGGTGTAACAGAAGA+TGG + chr1_3:3527885-3527904 None:intergenic 40.0%
TGATTATCAGTGGCAACAAC+TGG + chr1_3:3527900-3527919 None:intergenic 40.0%
! AACTGGTCGTTGATTATCAG+TGG + chr1_3:3527910-3527929 None:intergenic 40.0%
GATAATCAACGACCAGTTTC+TGG - chr1_3:3527912-3527931 Msa0097690:intron 40.0%
! ACCAGTTTCTGGATTATCAG+TGG - chr1_3:3527923-3527942 Msa0097690:intron 40.0%
ACCACTGATAATCCAGAAAC+TGG + chr1_3:3527927-3527946 None:intergenic 40.0%
GCTTGAAGTAACGACAGAAT+GGG + chr1_3:3527958-3527977 None:intergenic 40.0%
TGCTTGAAGTAACGACAGAA+TGG + chr1_3:3527959-3527978 None:intergenic 40.0%
CACGATTCTACTTCTGTCAA+TGG - chr1_3:3528217-3528236 Msa0097690:CDS 40.0%
TTATTTGAACCATGCAGCCA+TGG - chr1_3:3528582-3528601 Msa0097690:intron 40.0%
! GCCATGGATAAGGCTTTAAT+TGG - chr1_3:3528598-3528617 Msa0097690:intron 40.0%
CTCTTGTAGGAAGCCAAAAA+AGG - chr1_3:3528648-3528667 Msa0097690:intron 40.0%
!!! AACCACAGGAACTCCTTTTT+TGG + chr1_3:3528664-3528683 None:intergenic 40.0%
AAAAAAGGAGTTCCTGTGGT+TGG - chr1_3:3528663-3528682 Msa0097690:intron 40.0%
!! ACATTAGTTTGTCCAACCAC+AGG + chr1_3:3528678-3528697 None:intergenic 40.0%
AACTAATGTGACTCCTTCAG+AGG - chr1_3:3528689-3528708 Msa0097690:intron 40.0%
!!! TCATTGGTTTTCTCCTCTGA+AGG + chr1_3:3528705-3528724 None:intergenic 40.0%
TCAGAGGAGAAAACCAATGA+TGG - chr1_3:3528705-3528724 Msa0097690:intron 40.0%
ATGTTCATTCTGATTGGACG+TGG - chr1_3:3528911-3528930 Msa0097690:intron 40.0%
TGTTCATTCTGATTGGACGT+GGG - chr1_3:3528912-3528931 Msa0097690:intron 40.0%
GATATGCATAGTCCCATATG+AGG + chr1_3:3529111-3529130 None:intergenic 40.0%
AAGCCAGATAAAACGGTATG+CGG + chr1_3:3529181-3529200 None:intergenic 40.0%
CCTTTGACCCAAATACTGAA+TGG + chr1_3:3529228-3529247 None:intergenic 40.0%
CCATTCAGTATTTGGGTCAA+AGG - chr1_3:3529225-3529244 Msa0097690:intron 40.0%
CATCTTTGTGAATTCTTCGC+GGG + chr1_3:3529294-3529313 None:intergenic 40.0%
AGCTAACATCATCCACAAGA+TGG - chr1_3:3529434-3529453 Msa0097690:intron 40.0%
TAACATCATCCACAAGATGG+AGG - chr1_3:3529437-3529456 Msa0097690:intron 40.0%
!! CACATGAACCTTTTTGAGCA+TGG - chr1_3:3529688-3529707 Msa0097690:intron 40.0%
AAGGTTTATGGAGCTTCCTT+GGG + chr1_3:3529740-3529759 None:intergenic 40.0%
AAAGGTTTATGGAGCTTCCT+TGG + chr1_3:3529741-3529760 None:intergenic 40.0%
!! GCCACTTTGATTAGCTTGAT+AGG - chr1_3:3530291-3530310 Msa0097690:intron 40.0%
!! TGATTAGCTTGATAGGTCTG+GGG - chr1_3:3530298-3530317 Msa0097690:intron 40.0%
GAGGGTCAAATAGGATTAAC+GGG - chr1_3:3530403-3530422 Msa0097690:intron 40.0%
ACGGGTATTCAAATTTCGGT+TGG - chr1_3:3530421-3530440 Msa0097690:intron 40.0%
CGGGTATTCAAATTTCGGTT+GGG - chr1_3:3530422-3530441 Msa0097690:intron 40.0%
TTCAAATTTCGGTTGGGAGT+TGG - chr1_3:3530428-3530447 Msa0097690:intron 40.0%
GGACCAACTTGTCTTTATAC+TGG - chr1_3:3530481-3530500 Msa0097690:intron 40.0%
CTATTTCAGTGTGGCCATAT+AGG - chr1_3:3530790-3530809 Msa0097690:intron 40.0%
! TTGGCCATGAACTTGGATTT+TGG + chr1_3:3531225-3531244 None:intergenic 40.0%
GTAGCTTCTCTGATGTTACA+CGG - chr1_3:3531280-3531299 Msa0097690:CDS 40.0%
CAATTTATGCATTTGGGTCG+GGG - chr1_3:3531441-3531460 Msa0097690:CDS 40.0%
ATTCCTCGAAGTTTCTATGG+TGG - chr1_3:3531621-3531640 Msa0097690:intron 40.0%
ATCGGCCAATGCTCATTATT+AGG + chr1_3:3531778-3531797 None:intergenic 40.0%
GGCGGAATTTAGCAGAATAT+AGG - chr1_3:3531925-3531944 Msa0097690:CDS 40.0%
AAAAATTCAGGATCGGCTAG+AGG - chr1_3:3532093-3532112 Msa0097690:intron 40.0%
TTACCTGGAAAACAAGCAAG+CGG + chr1_3:3532153-3532172 None:intergenic 40.0%
!! TAGCGGATTGCAGAAAATAG+CGG - chr1_3:3532205-3532224 Msa0097690:CDS 40.0%
! ATCTGGGTTGTGGATTTTAG+GGG - chr1_3:3532528-3532547 Msa0097690:intron 40.0%
ATCAAGTCGGTGATGAGATT+GGG + chr1_3:3532564-3532583 None:intergenic 40.0%
AAAAGTCACCACTATTGCAG+TGG - chr1_3:3532675-3532694 Msa0097690:intron 40.0%
CAAATCCCGATGTGTAATAG+CGG - chr1_3:3532741-3532760 Msa0097690:CDS 40.0%
CTATACCGCTATTACACATC+GGG + chr1_3:3532749-3532768 None:intergenic 40.0%
GCTATACCGCTATTACACAT+CGG + chr1_3:3532750-3532769 None:intergenic 40.0%
TTATCTATGATGCACAGACG+CGG - chr1_3:3532783-3532802 Msa0097690:intron 40.0%
TTAGAACCAAGAAGAAGGGA+AGG + chr1_3:3533080-3533099 None:intergenic 40.0%
ACTACTATAAACGTGTGGTG+TGG + chr1_3:3533315-3533334 None:intergenic 40.0%
CGGCTAATCTAAAAAAACCC+AGG + chr1_3:3533546-3533565 None:intergenic 40.0%
AAATAACCGCCTATGAAGCA+CGG + chr1_3:3533609-3533628 None:intergenic 40.0%
GCAATATCTCTAGCCAATGT+TGG + chr1_3:3533668-3533687 None:intergenic 40.0%
! GTACTGATACTAACTTTGGC+AGG - chr1_3:3533784-3533803 Msa0097690:CDS 40.0%
! CTATATTCGTGACTTGGAGA+AGG - chr1_3:3533808-3533827 Msa0097690:intron 40.0%
AGGAGGAAGAGGAACAAAAA+AGG - chr1_3:3533828-3533847 Msa0097690:intron 40.0%
TAGTTGGTCACAATGAAAGC+TGG - chr1_3:3534090-3534109 Msa0097690:intron 40.0%
GAAAGCTGGCAAAATATGGA+AGG - chr1_3:3534104-3534123 Msa0097690:intron 40.0%
GATGCAACAGCTTGATATTG+AGG + chr1_3:3534171-3534190 None:intergenic 40.0%
GCTGTTGCATCAAATACATC+CGG - chr1_3:3534180-3534199 Msa0097690:intron 40.0%
!! AGAGTGTGTTGGTTGATGAA+AGG + chr1_3:3534396-3534415 None:intergenic 40.0%
ATCAACCAACACACTCTCTT+TGG - chr1_3:3534399-3534418 Msa0097690:intron 40.0%
AAATAGGACAAAGCCAGAAC+AGG + chr1_3:3534433-3534452 None:intergenic 40.0%
AGATATACTTAAGTCGGGCA+AGG - chr1_3:3534763-3534782 Msa0097690:intron 40.0%
ACACAAGGAAGATCTTTCTG+AGG + chr1_3:3534793-3534812 None:intergenic 40.0%
GTGATCTACTCGAATGGAAA+GGG + chr1_3:3534863-3534882 None:intergenic 40.0%
AGCGACTACATCAGTATTTG+AGG - chr1_3:3534886-3534905 Msa0097690:intron 40.0%
CTCACATATTATGGGACAGA+GGG + chr1_3:3535371-3535390 None:intergenic 40.0%
!! CTCAGTTATTTTGTGACGGA+GGG - chr1_3:3535593-3535612 Msa0097690:intron 40.0%
ATGGAATCTCTTGTGCATGT+TGG - chr1_3:3535687-3535706 Msa0097690:intron 40.0%
ATTAGAGAGAGCTAAGGAGA+AGG - chr1_3:3535835-3535854 Msa0097690:CDS 40.0%
ACGTAAGCGTGAAGAAGAAA+AGG - chr1_3:3536271-3536290 Msa0097690:CDS 40.0%
TAGAGATTAGGTTCCTGTAC+AGG - chr1_3:3536567-3536586 Msa0097690:intron 40.0%
CAAATGCAGGGAAATATTCC+TGG + chr1_3:3536610-3536629 None:intergenic 40.0%
CAGGAATATTTCCCTGCATT+TGG - chr1_3:3536608-3536627 Msa0097690:intron 40.0%
TCAGATATTGACCCCAGATA+AGG + chr1_3:3536638-3536657 None:intergenic 40.0%
TCTTCTCCTCTCTATAACCA+TGG + chr1_3:3536828-3536847 None:intergenic 40.0%
TCTAGAAAATCGCGAAGACA+TGG - chr1_3:3536937-3536956 Msa0097690:intron 40.0%
ATACCTTCCTAGACTTCTTG+CGG + chr1_3:3536969-3536988 None:intergenic 40.0%
! AAGTCTAGGAAGGTATGGAA+TGG - chr1_3:3536973-3536992 Msa0097690:intron 40.0%
GTAGGCATAAAAGACACAAG+AGG - chr1_3:3537112-3537131 Msa0097690:intron 40.0%
! AGAACTTCACCTGCATCTTT+TGG - chr1_3:3537252-3537271 Msa0097690:intron 40.0%
GCGTGTACATGAAAAGTAGA+AGG + chr1_3:3537306-3537325 None:intergenic 40.0%
ATGTACACGCCTGTGAATTT+AGG - chr1_3:3537316-3537335 Msa0097690:intron 40.0%
TTTGTGGCCTACATTACTCT+TGG + chr1_3:3537408-3537427 None:intergenic 40.0%
GTATGGTCGGAATCGTTGTA+AGG + chr1_3:3522732-3522751 None:intergenic 45.0%
!!! TTTTTAAGATAGGGTGGCGG+TGG - chr1_3:3522800-3522819 Msa0097690:three_prime_UTR 45.0%
CGGAGAGAGTGATATTTCAC+GGG - chr1_3:3522955-3522974 Msa0097690:exon 45.0%
TTTGGAGAGAGTGACAGTTC+AGG - chr1_3:3523090-3523109 Msa0097690:intron 45.0%
TTGGAGAGAGTGACAGTTCA+GGG - chr1_3:3523091-3523110 Msa0097690:intron 45.0%
! TACCACTTGCCACTTGATGT+TGG - chr1_3:3523374-3523393 Msa0097690:CDS 45.0%
GAAGATGGAAGACAGCACAA+GGG + chr1_3:3523402-3523421 None:intergenic 45.0%
TGAAGATGGAAGACAGCACA+AGG + chr1_3:3523403-3523422 None:intergenic 45.0%
ACACTTGCACAGATTGACCT+GGG + chr1_3:3523469-3523488 None:intergenic 45.0%
CTAGAGCTGATAGATTGAGG+GGG + chr1_3:3523566-3523585 None:intergenic 45.0%
GGACTAGAGCTGATAGATTG+AGG + chr1_3:3523569-3523588 None:intergenic 45.0%
CAGTCATTCATACGCAGCAA+GGG - chr1_3:3523855-3523874 Msa0097690:intron 45.0%
GAAGTCATGGGAACAAATGG+TGG + chr1_3:3523881-3523900 None:intergenic 45.0%
GCCGTTCCTTCATCTAATGT+CGG - chr1_3:3523917-3523936 Msa0097690:CDS 45.0%
CCCGACATTAGATGAAGGAA+CGG + chr1_3:3523921-3523940 None:intergenic 45.0%
CCGTTCCTTCATCTAATGTC+GGG - chr1_3:3523918-3523937 Msa0097690:CDS 45.0%
GATGATGAAACAGGATGACC+GGG + chr1_3:3524016-3524035 None:intergenic 45.0%
TGTTGTGGAACAGATGTCAG+TGG + chr1_3:3524076-3524095 None:intergenic 45.0%
GTTCACACCATCTTATGGTC+AGG - chr1_3:3524279-3524298 Msa0097690:CDS 45.0%
TTCCAATAGAACGGCCAAGA+TGG - chr1_3:3524615-3524634 Msa0097690:intron 45.0%
TTTGGAAGAAAGGAAGTGGC+AGG - chr1_3:3524647-3524666 Msa0097690:intron 45.0%
TTGGAAGAAAGGAAGTGGCA+GGG - chr1_3:3524648-3524667 Msa0097690:intron 45.0%
GGAACTTGGTCTGTTTACAG+AGG - chr1_3:3524669-3524688 Msa0097690:intron 45.0%
AATTGCACAAACCTCCCTTG+AGG + chr1_3:3524834-3524853 None:intergenic 45.0%
TGATTCATTCACTGACCCTC+CGG + chr1_3:3525195-3525214 None:intergenic 45.0%
ATTACGAGTCAATAGGGAGG+AGG - chr1_3:3525214-3525233 Msa0097690:CDS 45.0%
!! TGAGATCGGAGGGTATTTGA+AGG - chr1_3:3525248-3525267 Msa0097690:CDS 45.0%
!! CGGAGGGTATTTGAAGGAAA+AGG - chr1_3:3525254-3525273 Msa0097690:CDS 45.0%
GGTCAGAGGAGGACTAAATT+TGG - chr1_3:3525300-3525319 Msa0097690:intron 45.0%
GAGTTGCAGTTTGTGAGGAT+AGG - chr1_3:3525331-3525350 Msa0097690:intron 45.0%
CAGTTTGTGAGGATAGGGAT+AGG - chr1_3:3525337-3525356 Msa0097690:intron 45.0%
CGTGAGAGCTTGAGTTTCAT+AGG - chr1_3:3525362-3525381 Msa0097690:intron 45.0%
TACAGATGTTGCCTGAGTGA+GGG - chr1_3:3525424-3525443 Msa0097690:CDS 45.0%
GAAACATGCAATGAAGCTGG+GGG + chr1_3:3525510-3525529 None:intergenic 45.0%
CCAGAAACATGCAATGAAGC+TGG + chr1_3:3525513-3525532 None:intergenic 45.0%
CCAGCTTCATTGCATGTTTC+TGG - chr1_3:3525510-3525529 Msa0097690:intron 45.0%
ATTATCAGGTATGCAGCTGC+AGG - chr1_3:3525758-3525777 Msa0097690:intron 45.0%
! GCCAACTCAACTAAGTGTTG+TGG - chr1_3:3525784-3525803 Msa0097690:intron 45.0%
CCCACAACACTTAGTTGAGT+TGG + chr1_3:3525788-3525807 None:intergenic 45.0%
AATCTTTCCTCACACCCCTT+GGG + chr1_3:3525955-3525974 None:intergenic 45.0%
TAATCTTTCCTCACACCCCT+TGG + chr1_3:3525956-3525975 None:intergenic 45.0%
!! CCGGTTTTGTAAGGAAGAGT+AGG + chr1_3:3526165-3526184 None:intergenic 45.0%
! ACAAAACCGGCTTAAAGGTG+AGG - chr1_3:3526175-3526194 Msa0097690:CDS 45.0%
! CAAAACCGGCTTAAAGGTGA+GGG - chr1_3:3526176-3526195 Msa0097690:CDS 45.0%
AGATGCAGAGTTGTTGCTAG+TGG + chr1_3:3526378-3526397 None:intergenic 45.0%
GCAACAACTCTGCATCTGAT+TGG - chr1_3:3526381-3526400 Msa0097690:intron 45.0%
! AAGAGCATACTGCTGGTGAT+GGG - chr1_3:3526405-3526424 Msa0097690:intron 45.0%
AGAGGTGACATCAACTCCAA+AGG + chr1_3:3526637-3526656 None:intergenic 45.0%
GCTCTATATGGTCACTGTGA+AGG - chr1_3:3526885-3526904 Msa0097690:intron 45.0%
TATATGGTCACTGTGAAGGC+TGG - chr1_3:3526889-3526908 Msa0097690:intron 45.0%
ATATGGTCACTGTGAAGGCT+GGG - chr1_3:3526890-3526909 Msa0097690:intron 45.0%
ACTAAAGGAACGGGAATGGA+AGG + chr1_3:3527019-3527038 Msa0097700:CDS 45.0%
AATTCTCCTGGATGTGACAG+AGG - chr1_3:3527390-3527409 Msa0097690:intron 45.0%
ATTCTCCTGGATGTGACAGA+GGG - chr1_3:3527391-3527410 Msa0097690:intron 45.0%
!!! TTTTGACTGTGACTTGCTGC+AGG - chr1_3:3527562-3527581 Msa0097690:intron 45.0%
!! AGTTTTATGTGCCTGCTCAC+GGG + chr1_3:3527733-3527752 None:intergenic 45.0%
!! TTGTTTCTGACACCATTCCC+TGG + chr1_3:3527761-3527780 None:intergenic 45.0%
GTCGTTACTTCAAGCACCAT+AGG - chr1_3:3527963-3527982 Msa0097690:intron 45.0%
CTCACAGTTACAACAGTGCT+TGG + chr1_3:3527996-3528015 None:intergenic 45.0%
! TGGAGCACCTCTTCAAGATA+TGG - chr1_3:3528237-3528256 Msa0097690:CDS 45.0%
AGCACCTCTTCAAGATATGG+AGG - chr1_3:3528240-3528259 Msa0097690:CDS 45.0%
CACAGCAGGTATCTCCAAAT+AGG + chr1_3:3528327-3528346 None:intergenic 45.0%
AGCCAAAAAAGGAGTTCCTG+TGG - chr1_3:3528659-3528678 Msa0097690:intron 45.0%
! TCGCTCACCAAGTGTTTTCA+GGG + chr1_3:3529058-3529077 None:intergenic 45.0%
! TTCGCTCACCAAGTGTTTTC+AGG + chr1_3:3529059-3529078 None:intergenic 45.0%
GCGAAAACAAGCTTTCAACG+AGG - chr1_3:3529074-3529093 Msa0097690:intron 45.0%
AGAAGCTAGAGGCTGAAGAA+AGG - chr1_3:3529249-3529268 Msa0097690:intron 45.0%
! CATGGTGGAACTTGAGAGAA+AGG - chr1_3:3529641-3529660 Msa0097690:intron 45.0%
AGGTCTATTGTTGGTACCCA+AGG - chr1_3:3529721-3529740 Msa0097690:intron 45.0%
!!! TTTATTTTGTTGGTGGGGGC+AGG - chr1_3:3529820-3529839 Msa0097690:intron 45.0%
!! GAGGAGTTGAAGTATCGCAT+TGG - chr1_3:3529920-3529939 Msa0097690:intron 45.0%
!! GATTAGCTTGATAGGTCTGG+GGG - chr1_3:3530299-3530318 Msa0097690:intron 45.0%
ATGGTTCCCATCATTCTTGC+TGG + chr1_3:3530332-3530351 None:intergenic 45.0%
!! TGGTCTTATGCTGACTTGCT+GGG - chr1_3:3530501-3530520 Msa0097690:intron 45.0%
!! TTGTTGACTTGCTGCTCGAT+GGG + chr1_3:3531068-3531087 None:intergenic 45.0%
AATGGCAATCAAGCTACCCT+AGG + chr1_3:3531345-3531364 None:intergenic 45.0%
! TGCCCTGATGTTCACTCTTT+TGG + chr1_3:3531709-3531728 None:intergenic 45.0%
! GGATTTTCCACCCCAATATG+TGG + chr1_3:3531740-3531759 None:intergenic 45.0%
GGAAAAGGAAAATGCTGCTG+AGG - chr1_3:3531896-3531915 Msa0097690:intron 45.0%
AAAATGCTGCTGAGGAACAC+CGG - chr1_3:3531904-3531923 Msa0097690:intron 45.0%
! GGAGTCCTGTGATTTTGTGA+AGG - chr1_3:3531956-3531975 Msa0097690:CDS 45.0%
! AAATAGTGGAAGCTGCACAG+CGG - chr1_3:3532251-3532270 Msa0097690:CDS 45.0%
AGTGATGAGAGAAGATGGAG+AGG - chr1_3:3532474-3532493 Msa0097690:intron 45.0%
AGAGGTAGTTTAGTGACGAG+AGG - chr1_3:3532498-3532517 Msa0097690:intron 45.0%
TGACGAGAGGTTACCTTATC+TGG - chr1_3:3532511-3532530 Msa0097690:intron 45.0%
GACGAGAGGTTACCTTATCT+GGG - chr1_3:3532512-3532531 Msa0097690:intron 45.0%
AGGTTACCTTATCTGGGTTG+TGG - chr1_3:3532518-3532537 Msa0097690:intron 45.0%
CATCAAGTCGGTGATGAGAT+TGG + chr1_3:3532565-3532584 None:intergenic 45.0%
CGCTATTACACATCGGGATT+TGG + chr1_3:3532743-3532762 None:intergenic 45.0%
GGTTTACACCAGAGCAATGT+CGG + chr1_3:3532934-3532953 None:intergenic 45.0%
GCAAAGCAGAGGAACAGAAA+CGG + chr1_3:3533132-3533151 None:intergenic 45.0%
AACACAAAGCAGCAAAGCAG+AGG + chr1_3:3533143-3533162 None:intergenic 45.0%
!!! TGTGGTGGTGGTCATGTTTT+TGG + chr1_3:3533170-3533189 None:intergenic 45.0%
CAAAGTCACAAAACGTGTGG+TGG + chr1_3:3533185-3533204 None:intergenic 45.0%
GGACAAAGTCACAAAACGTG+TGG + chr1_3:3533188-3533207 None:intergenic 45.0%
ACTATAAACGTGTGGTGTGG+TGG + chr1_3:3533312-3533331 None:intergenic 45.0%
GCAGGACTATATTCGTGACT+TGG - chr1_3:3533802-3533821 Msa0097690:intron 45.0%
! TATTCGTGACTTGGAGAAGG+AGG - chr1_3:3533811-3533830 Msa0097690:intron 45.0%
TGATATAGGAACGAGTCCGT+CGG - chr1_3:3533932-3533951 Msa0097690:intron 45.0%
GCAACTTGCGAAATGCATCA+CGG + chr1_3:3533972-3533991 None:intergenic 45.0%
GTGGCGAGATTATTGCTTGA+AGG - chr1_3:3534035-3534054 Msa0097690:intron 45.0%
! TCACTCCAAAGAGAGTGTGT+TGG + chr1_3:3534407-3534426 None:intergenic 45.0%
! TTTGGAGTGACATCCTGTTC+TGG - chr1_3:3534417-3534436 Msa0097690:intron 45.0%
ATACTTAAGTCGGGCAAGGT+AGG - chr1_3:3534767-3534786 Msa0097690:intron 45.0%
ATCTACTCGAATGGAAAGGG+AGG + chr1_3:3534860-3534879 None:intergenic 45.0%
GGTGATCTACTCGAATGGAA+AGG + chr1_3:3534864-3534883 None:intergenic 45.0%
GCTCACATATTATGGGACAG+AGG + chr1_3:3535372-3535391 None:intergenic 45.0%
!! GCTCAGTTATTTTGTGACGG+AGG - chr1_3:3535592-3535611 Msa0097690:intron 45.0%
TAAAGTCATCAGCAAGGCGT+TGG + chr1_3:3535883-3535902 None:intergenic 45.0%
TTCAACATGGGAGGAATGCA+AGG - chr1_3:3536031-3536050 Msa0097690:CDS 45.0%
!! GGAATGCAAGGCACTTTTTG+AGG - chr1_3:3536043-3536062 Msa0097690:CDS 45.0%
!! TCACCCCACTGAGTTTGTTT+TGG + chr1_3:3536507-3536526 None:intergenic 45.0%
TGACAGCCATGGTTATAGAG+AGG - chr1_3:3536819-3536838 Msa0097690:intron 45.0%
!! AAGAAGGCATCAGAGCAGTA+TGG - chr1_3:3536879-3536898 Msa0097690:intron 45.0%
GCAAGAAGTCTAGGAAGGTA+TGG - chr1_3:3536968-3536987 Msa0097690:intron 45.0%
TCTCCTGAGTCAGACAATGA+AGG - chr1_3:3537090-3537109 Msa0097690:intron 45.0%
CTACCTTCATTGTCTGACTC+AGG + chr1_3:3537096-3537115 None:intergenic 45.0%
CTGAGTCAGACAATGAAGGT+AGG - chr1_3:3537094-3537113 Msa0097690:intron 45.0%
AAAAGACACAAGAGGGACCA+CGG - chr1_3:3537120-3537139 Msa0097690:intron 45.0%
TGGAATGAGGAGCTTGAAGA+TGG - chr1_3:3537165-3537184 Msa0097690:intron 45.0%
GGAATGAGGAGCTTGAAGAT+GGG - chr1_3:3537166-3537185 Msa0097690:intron 45.0%
GAATGAGGAGCTTGAAGATG+GGG - chr1_3:3537167-3537186 Msa0097690:intron 45.0%
!! ATAAATTTAATTCATTATAT+TGG + chr1_3:3526254-3526273 None:intergenic 5.0%
GCAAGAAAGAACAGAAGCGG+CGG - chr1_3:3522665-3522684 Msa0097690:three_prime_UTR 50.0%
GAATCCCTTGACGTGTGGTA+TGG + chr1_3:3522749-3522768 None:intergenic 50.0%
CTCCAACATCAAGTGGCAAG+TGG + chr1_3:3523379-3523398 None:intergenic 50.0%
ACAAGGGCTCCAACATCAAG+TGG + chr1_3:3523386-3523405 None:intergenic 50.0%
! TTATCGGTGTTCTCTCACCC+AGG - chr1_3:3523449-3523468 Msa0097690:CDS 50.0%
GACACTTGCACAGATTGACC+TGG + chr1_3:3523470-3523489 None:intergenic 50.0%
GTGCTTGAGACACAAGGTTG+AGG + chr1_3:3523534-3523553 None:intergenic 50.0%
ACCTTGTGTCTCAAGCACTC+TGG - chr1_3:3523536-3523555 Msa0097690:intron 50.0%
! TCCAGAGTGCTTGAGACACA+AGG + chr1_3:3523540-3523559 None:intergenic 50.0%
CCTTGCTGCGTATGAATGAC+TGG + chr1_3:3523857-3523876 None:intergenic 50.0%
CCAGTCATTCATACGCAGCA+AGG - chr1_3:3523854-3523873 Msa0097690:intron 50.0%
GGCATCCCGACATTAGATGA+AGG + chr1_3:3523926-3523945 None:intergenic 50.0%
GCTCCAAGACAAATTCAGCC+CGG - chr1_3:3523995-3524014 Msa0097690:intron 50.0%
TGACCGGGCTGAATTTGTCT+TGG + chr1_3:3524001-3524020 None:intergenic 50.0%
!! ACAGCTTGCTGTGCATGTTG+TGG + chr1_3:3524091-3524110 None:intergenic 50.0%
! ATGCATGGCTTGCCTGTTTC+TGG - chr1_3:3524130-3524149 Msa0097690:CDS 50.0%
GGCAATGCCTGACCATAAGA+TGG + chr1_3:3524289-3524308 None:intergenic 50.0%
TTGAGGCGGATGCTGGTATT+GGG + chr1_3:3524311-3524330 None:intergenic 50.0%
! TTTGAGGCGGATGCTGGTAT+TGG + chr1_3:3524312-3524331 None:intergenic 50.0%
AGCTGTAACGTCTGTACAGC+CGG - chr1_3:3524387-3524406 Msa0097690:intron 50.0%
CCAGATGATTGAACTCCAGC+CGG + chr1_3:3524409-3524428 None:intergenic 50.0%
CACCATCTTGGCCGTTCTAT+TGG + chr1_3:3524620-3524639 None:intergenic 50.0%
AAAGGAAGTGGCAGGGAACT+TGG - chr1_3:3524655-3524674 Msa0097690:intron 50.0%
TAAAACTTGAGGGAGGGCTC+CGG - chr1_3:3525173-3525192 Msa0097690:intron 50.0%
GTTAGGCATGTTTGGGTCAG+AGG - chr1_3:3525286-3525305 Msa0097690:CDS 50.0%
AGGTTGCGTTGCACAAAGAG+AGG - chr1_3:3525382-3525401 Msa0097690:intron 50.0%
GGTTGCGTTGCACAAAGAGA+GGG - chr1_3:3525383-3525402 Msa0097690:intron 50.0%
CTCACTCAGGCAACATCTGT+AGG + chr1_3:3525425-3525444 None:intergenic 50.0%
CTACAGATGTTGCCTGAGTG+AGG - chr1_3:3525423-3525442 Msa0097690:CDS 50.0%
AGGTGCGATCGCATCTAAGT+AGG + chr1_3:3525593-3525612 None:intergenic 50.0%
! GATTGGCAAGAGCATACTGC+TGG - chr1_3:3526398-3526417 Msa0097690:intron 50.0%
! CAAGAGCATACTGCTGGTGA+TGG - chr1_3:3526404-3526423 Msa0097690:intron 50.0%
!! ATACTGCTGGTGATGGGAGA+AGG - chr1_3:3526411-3526430 Msa0097690:intron 50.0%
!! CTGGTGATGGGAGAAGGTAT+TGG - chr1_3:3526417-3526436 Msa0097690:intron 50.0%
!! GGAGTTGATGTCACCTCTTG+AGG - chr1_3:3526639-3526658 Msa0097690:intron 50.0%
TATGGTCACTGTGAAGGCTG+GGG - chr1_3:3526891-3526910 Msa0097690:intron 50.0%
GGGTTGCACTTTCTCAAGTC+AGG - chr1_3:3526911-3526930 Msa0097690:intron 50.0%
GGGCTGATGCATCAACTGTT+TGG - chr1_3:3527411-3527430 Msa0097690:intron 50.0%
! AGTTGATGTTGCAGCAGAGG+AGG + chr1_3:3527805-3527824 None:intergenic 50.0%
!! TGGAGTTGATGTTGCAGCAG+AGG + chr1_3:3527808-3527827 None:intergenic 50.0%
TTGGAGCTAGCTGCATTAGC+TGG + chr1_3:3527831-3527850 None:intergenic 50.0%
GGGCTTGAAGCAAGACCATT+AGG + chr1_3:3527864-3527883 None:intergenic 50.0%
! AGTGCTTGGTTCGACTCCTA+TGG + chr1_3:3527982-3528001 None:intergenic 50.0%
AAGCTTCCTGCAACTGCTGT+AGG + chr1_3:3528026-3528045 None:intergenic 50.0%
ACAGCAGTTGCAGGAAGCTT+AGG - chr1_3:3528026-3528045 Msa0097690:intron 50.0%
GAACCATGCAGCCATGGATA+AGG - chr1_3:3528588-3528607 Msa0097690:intron 50.0%
! AAGCCTTATCCATGGCTGCA+TGG + chr1_3:3528594-3528613 None:intergenic 50.0%
GGCTTCCTACAAGAGTTGCA+AGG + chr1_3:3528643-3528662 None:intergenic 50.0%
TTCTGATTGGACGTGGGAAC+AGG - chr1_3:3528918-3528937 Msa0097690:intron 50.0%
CTTTCAACGAGGTGAGAGTC+AGG - chr1_3:3529085-3529104 Msa0097690:intron 50.0%
GTGAGAGTCAGGCCTCATAT+GGG - chr1_3:3529096-3529115 Msa0097690:intron 50.0%
! CAGCCGCATACCGTTTTATC+TGG - chr1_3:3529175-3529194 Msa0097690:intron 50.0%
GGGTCAAAGGAAGAAGCTAG+AGG - chr1_3:3529238-3529257 Msa0097690:intron 50.0%
CAAGATTGCACACGAAGTCG+TGG + chr1_3:3530159-3530178 None:intergenic 50.0%
CGACTTCGTGTGCAATCTTG+TGG - chr1_3:3530159-3530178 Msa0097690:intron 50.0%
!! CTGGTCTTATGCTGACTTGC+TGG - chr1_3:3530500-3530519 Msa0097690:intron 50.0%
ACGAGGCTTGATTGTTCCCA+TGG - chr1_3:3530834-3530853 Msa0097690:intron 50.0%
GGCTTGATTGTTCCCATGGA+TGG - chr1_3:3530838-3530857 Msa0097690:intron 50.0%
!! TGTTGACTTGCTGCTCGATG+GGG + chr1_3:3531067-3531086 None:intergenic 50.0%
!! GTTGTTGACTTGCTGCTCGA+TGG + chr1_3:3531069-3531088 None:intergenic 50.0%
CAGCCACCATAGAAACTTCG+AGG + chr1_3:3531627-3531646 None:intergenic 50.0%
!! TGACCGCTTGCTTGTTTTCC+AGG - chr1_3:3532147-3532166 Msa0097690:CDS 50.0%
CACCACTATTGCAGTGGTAG+CGG - chr1_3:3532681-3532700 Msa0097690:intron 50.0%
!! TTTTCTGTGATTGGCCGCGT+CGG + chr1_3:3532955-3532974 None:intergenic 50.0%
!! AAAGGTGCGGTGGTGGAAAA+TGG + chr1_3:3533037-3533056 None:intergenic 50.0%
GAAGAAGGGAAGGAAGCAGA+CGG + chr1_3:3533070-3533089 None:intergenic 50.0%
CTGCTTCCTTCCCTTCTTCT+TGG - chr1_3:3533071-3533090 Msa0097690:intron 50.0%
AGTCACAAAACGTGTGGTGG+TGG + chr1_3:3533182-3533201 None:intergenic 50.0%
AAAAACCCAGGACACGGACA+CGG + chr1_3:3533534-3533553 None:intergenic 50.0%
! TGACTTGGAGAAGGAGGAAG+AGG - chr1_3:3533817-3533836 Msa0097690:intron 50.0%
GATATAGGAACGAGTCCGTC+GGG - chr1_3:3533933-3533952 Msa0097690:intron 50.0%
ATATAGGAACGAGTCCGTCG+GGG - chr1_3:3533934-3533953 Msa0097690:intron 50.0%
! GGTTTTTCCTTTCACCCCGA+CGG + chr1_3:3533951-3533970 None:intergenic 50.0%
GCTACGGTGATCTACTCGAA+TGG + chr1_3:3534869-3534888 None:intergenic 50.0%
TGAAGAGGTTGTCAGCCAGT+TGG - chr1_3:3535724-3535743 Msa0097690:intron 50.0%
AGAGAGAGCTAAGGAGAAGG+AGG - chr1_3:3535838-3535857 Msa0097690:CDS 50.0%
ACTCAGTGGGGTGAATGAGT+TGG - chr1_3:3536513-3536532 Msa0097690:intron 50.0%
CAAGACATGACTGACAGCCA+TGG - chr1_3:3536808-3536827 Msa0097690:intron 50.0%
! AAGGCATCAGAGCAGTATGG+AGG - chr1_3:3536882-3536901 Msa0097690:intron 50.0%
TCAGAGCAGTATGGAGGATG+TGG - chr1_3:3536888-3536907 Msa0097690:intron 50.0%
GAAGTGACCGCAAGAAGTCT+AGG - chr1_3:3536959-3536978 Msa0097690:intron 50.0%
TGACCGCAAGAAGTCTAGGA+AGG - chr1_3:3536963-3536982 Msa0097690:intron 50.0%
AAAGACACAAGAGGGACCAC+GGG - chr1_3:3537121-3537140 Msa0097690:intron 50.0%
CTCATTCCATCCAGTTCTCC+TGG + chr1_3:3537154-3537173 None:intergenic 50.0%
CAGGAGAACTGGATGGAATG+AGG - chr1_3:3537152-3537171 Msa0097690:intron 50.0%
TCCGACCATACCACACGTCA+AGG - chr1_3:3522741-3522760 Msa0097690:three_prime_UTR 55.0%
CCCTTGACGTGTGGTATGGT+CGG + chr1_3:3522745-3522764 None:intergenic 55.0%
CCGACCATACCACACGTCAA+GGG - chr1_3:3522742-3522761 Msa0097690:three_prime_UTR 55.0%
ACCACACGTCAAGGGATTCC+AGG - chr1_3:3522750-3522769 Msa0097690:three_prime_UTR 55.0%
CCACACGTCAAGGGATTCCA+GGG - chr1_3:3522751-3522770 Msa0097690:three_prime_UTR 55.0%
! TCAAAACAGTGGCGGAGCCA+GGG + chr1_3:3522840-3522859 None:intergenic 55.0%
! ATCAAAACAGTGGCGGAGCC+AGG + chr1_3:3522841-3522860 None:intergenic 55.0%
AAGGTTGAGGTCCCTTGTCG+TGG + chr1_3:3523521-3523540 None:intergenic 55.0%
GTCGGGATGCCTGCTATTCA+AGG - chr1_3:3523935-3523954 Msa0097690:CDS 55.0%
!! TGAGGAGGTGCTCCAGAAAC+AGG + chr1_3:3524145-3524164 None:intergenic 55.0%
TGAGGCGGATGCTGGTATTG+GGG + chr1_3:3524310-3524329 None:intergenic 55.0%
! CATGCATTTGAGGCGGATGC+TGG + chr1_3:3524318-3524337 None:intergenic 55.0%
! GGAGGTGCATGCATTTGAGG+CGG + chr1_3:3524325-3524344 None:intergenic 55.0%
! GCAGGAGGTGCATGCATTTG+AGG + chr1_3:3524328-3524347 None:intergenic 55.0%
CAAATGCATGCACCTCCTGC+CGG - chr1_3:3524328-3524347 Msa0097690:CDS 55.0%
TGAGGACGACCAAGGTTGTC+CGG + chr1_3:3524350-3524369 None:intergenic 55.0%
!! TGAGGTACTGAGGACGACCA+AGG + chr1_3:3524358-3524377 None:intergenic 55.0%
!! TGCAGCACTCTGAGGTACTG+AGG + chr1_3:3524368-3524387 None:intergenic 55.0%
GTTACAGCTGCAGCACTCTG+AGG + chr1_3:3524376-3524395 None:intergenic 55.0%
CCGGCTGGAGTTCAATCATC+TGG - chr1_3:3524406-3524425 Msa0097690:intron 55.0%
AGGCATGTTTGGGTCAGAGG+AGG - chr1_3:3525289-3525308 Msa0097690:intron 55.0%
GCGTTGCACAAAGAGAGGGT+CGG - chr1_3:3525387-3525406 Msa0097690:intron 55.0%
ATCTGCTCACTCCCTCACTC+AGG + chr1_3:3525438-3525457 None:intergenic 55.0%
GAGTGAGGGAGTGAGCAGAT+AGG - chr1_3:3525438-3525457 Msa0097690:intron 55.0%
ATGCGATCGCACCTTGTCCT+GGG - chr1_3:3525599-3525618 Msa0097690:intron 55.0%
TTCTCACTGTGCTCAACCCC+AGG + chr1_3:3525619-3525638 None:intergenic 55.0%
TCAGGTATGCAGCTGCAGGT+TGG - chr1_3:3525762-3525781 Msa0097690:intron 55.0%
TTGTGGGTTCTCCCAACTCG+TGG - chr1_3:3525801-3525820 Msa0097690:intron 55.0%
!! TGTTTTGCCCAAGGGGTGTG+AGG - chr1_3:3525945-3525964 Msa0097690:CDS 55.0%
GGCAACCCTCACCTTTAAGC+CGG + chr1_3:3526184-3526203 None:intergenic 55.0%
ATCAGCCCTCTGTCACATCC+AGG + chr1_3:3527399-3527418 None:intergenic 55.0%
GAGCTAGCTGCATTAGCTGG+TGG + chr1_3:3527828-3527847 None:intergenic 55.0%
ACTGCACCTACAGCAGTTGC+AGG - chr1_3:3528017-3528036 Msa0097690:intron 55.0%
ACGTGGGAACAGGTAAGACG+AGG - chr1_3:3528928-3528947 Msa0097690:intron 55.0%
GGTGAGAGTCAGGCCTCATA+TGG - chr1_3:3529095-3529114 Msa0097690:intron 55.0%
!! ATTTTGTTGGTGGGGGCAGG+TGG - chr1_3:3529823-3529842 Msa0097690:intron 55.0%
!! TTTTGTTGGTGGGGGCAGGT+GGG - chr1_3:3529824-3529843 Msa0097690:intron 55.0%
GCACACGAAGTCGTGGATCT+TGG + chr1_3:3530152-3530171 None:intergenic 55.0%
TTGTAGTCCAGGTCGCACCT+AGG - chr1_3:3531325-3531344 Msa0097690:intron 55.0%
TGTAGTCCAGGTCGCACCTA+GGG - chr1_3:3531326-3531345 Msa0097690:intron 55.0%
GCAGCCTGGCACCACATATT+GGG - chr1_3:3531726-3531745 Msa0097690:intron 55.0%
CAGCCTGGCACCACATATTG+GGG - chr1_3:3531727-3531746 Msa0097690:intron 55.0%
GAGAGAAGATGGAGAGGCAG+AGG - chr1_3:3532480-3532499 Msa0097690:intron 55.0%
GTCCGCTACCACTGCAATAG+TGG + chr1_3:3532686-3532705 None:intergenic 55.0%
GCGGTATAGCAGCGCTATAG+CGG - chr1_3:3532760-3532779 Msa0097690:intron 55.0%
ACACGGATCCGACATTGCTC+TGG - chr1_3:3532923-3532942 Msa0097690:intron 55.0%
TGCTCTGGTGTAAACCGACG+CGG - chr1_3:3532938-3532957 Msa0097690:intron 55.0%
! TTCCACCACCGCACCTTTTC+CGG - chr1_3:3533039-3533058 Msa0097690:intron 55.0%
CAGAGGAACAGAAACGGCGA+TGG + chr1_3:3533126-3533145 None:intergenic 55.0%
ATATTGCCGTGTCCGTGTCC+TGG - chr1_3:3533525-3533544 Msa0097690:CDS 55.0%
TATTGCCGTGTCCGTGTCCT+GGG - chr1_3:3533526-3533545 Msa0097690:CDS 55.0%
ATGAAGCACGGACTCGGACA+CGG + chr1_3:3533597-3533616 None:intergenic 55.0%
TGTCCGAGTCCGTGCTTCAT+AGG - chr1_3:3533597-3533616 Msa0097690:intron 55.0%
TCGAATGGAAAGGGAGGCTG+GGG + chr1_3:3534854-3534873 None:intergenic 55.0%
CTCGAATGGAAAGGGAGGCT+GGG + chr1_3:3534855-3534874 None:intergenic 55.0%
ACTCGAATGGAAAGGGAGGC+TGG + chr1_3:3534856-3534875 None:intergenic 55.0%
GCACGCTACACAACCTGTAC+AGG + chr1_3:3536583-3536602 None:intergenic 55.0%
GTTGTGTAGCGTGCATGACC+AGG - chr1_3:3536589-3536608 Msa0097690:intron 55.0%
AAGACACAAGAGGGACCACG+GGG - chr1_3:3537122-3537141 Msa0097690:intron 55.0%
ACGGTTCCAGGAGAACTGGA+TGG - chr1_3:3537145-3537164 Msa0097690:intron 55.0%
GAGCTTGAAGATGGGGAGCT+TGG - chr1_3:3537174-3537193 Msa0097690:intron 55.0%
CCCTGGAATCCCTTGACGTG+TGG + chr1_3:3522754-3522773 None:intergenic 60.0%
! AAAACAGTGGCGGAGCCAGG+GGG + chr1_3:3522838-3522857 None:intergenic 60.0%
! CAAAACAGTGGCGGAGCCAG+GGG + chr1_3:3522839-3522858 None:intergenic 60.0%
GTTTGGCAGCAGGAAGGCTG+AGG + chr1_3:3523590-3523609 None:intergenic 60.0%
AAAGGGGAGGGTTTGGCAGC+AGG + chr1_3:3523600-3523619 None:intergenic 60.0%
GTAACGTCTGTACAGCCGGC+TGG - chr1_3:3524391-3524410 Msa0097690:intron 60.0%
GATGCGATCGCACCTTGTCC+TGG - chr1_3:3525598-3525617 Msa0097690:intron 60.0%
TGCGATCGCACCTTGTCCTG+GGG - chr1_3:3525600-3525619 Msa0097690:intron 60.0%
CTGTGCTCAACCCCAGGACA+AGG + chr1_3:3525613-3525632 None:intergenic 60.0%
CTGCTCACGGGCCAACTGAA+CGG + chr1_3:3527721-3527740 None:intergenic 60.0%
AGCAGAGGAGGCAGCAGCAT+TGG + chr1_3:3527793-3527812 None:intergenic 60.0%
! TTTGTTGGTGGGGGCAGGTG+GGG - chr1_3:3529825-3529844 Msa0097690:intron 60.0%
AAGCTACCCTAGGTGCGACC+TGG + chr1_3:3531335-3531354 None:intergenic 60.0%
GGTCGGGGTGTGAATGTGCA+GGG - chr1_3:3531456-3531475 Msa0097690:CDS 60.0%
GAGTGAACATCAGGGCAGCC+TGG - chr1_3:3531712-3531731 Msa0097690:intron 60.0%
GGCAGCCTGGCACCACATAT+TGG - chr1_3:3531725-3531744 Msa0097690:intron 60.0%
CCACCCCAATATGTGGTGCC+AGG + chr1_3:3531733-3531752 None:intergenic 60.0%
CCTGGCACCACATATTGGGG+TGG - chr1_3:3531730-3531749 Msa0097690:intron 60.0%
ATGCTGCTGAGGAACACCGG+CGG - chr1_3:3531907-3531926 Msa0097690:intron 60.0%
TTCCGACACGGACGCGCTTA+CGG - chr1_3:3532831-3532850 Msa0097690:intron 60.0%
CGTACGATTCGCGTCAGACG+CGG - chr1_3:3532858-3532877 Msa0097690:intron 60.0%
GAAGGGAAGGAAGCAGACGG+CGG + chr1_3:3533067-3533086 None:intergenic 60.0%
CCGCCTATGAAGCACGGACT+CGG + chr1_3:3533603-3533622 None:intergenic 60.0%
CCGAGTCCGTGCTTCATAGG+CGG - chr1_3:3533600-3533619 Msa0097690:intron 60.0%
AACGAGTCCGTCGGGGTGAA+AGG - chr1_3:3533941-3533960 Msa0097690:intron 60.0%
GAAAGGGAGGCTGGGGTTAG+CGG + chr1_3:3534847-3534866 None:intergenic 60.0%
GGAGCTTGGCGATGATGCAG+AGG - chr1_3:3537188-3537207 Msa0097690:intron 60.0%
GGGAGGGTTTGGCAGCAGGA+AGG + chr1_3:3523596-3523615 None:intergenic 65.0%
CACCTCCTGCCGGACAACCT+TGG - chr1_3:3524338-3524357 Msa0097690:CDS 65.0%
GACCAAGGTTGTCCGGCAGG+AGG + chr1_3:3524343-3524362 None:intergenic 65.0%
GACGACCAAGGTTGTCCGGC+AGG + chr1_3:3524346-3524365 None:intergenic 65.0%
AACTTGAGGGAGGGCTCCGG+AGG - chr1_3:3525176-3525195 Msa0097690:intron 65.0%
ACTTGAGGGAGGGCTCCGGA+GGG - chr1_3:3525177-3525196 Msa0097690:intron 65.0%
CGTTCAGTTGGCCCGTGAGC+AGG - chr1_3:3527719-3527738 Msa0097690:intron 65.0%
GGGTCGGGGTGTGAATGTGC+AGG - chr1_3:3531455-3531474 Msa0097690:CDS 65.0%
TGTCGGAACCGCGTCGGACA+CGG + chr1_3:3532819-3532838 None:intergenic 65.0%
TGTCCGACGCGGTTCCGACA+CGG - chr1_3:3532819-3532838 Msa0097690:intron 65.0%
TGCCGTAAGCGCGTCCGTGT+CGG + chr1_3:3532836-3532855 None:intergenic 65.0%
CACGACACGGACACGGGACA+CGG + chr1_3:3533566-3533585 None:intergenic 65.0%
ACGGGACACGACACGGACAC+GGG + chr1_3:3533572-3533591 None:intergenic 65.0%
CACGGGACACGACACGGACA+CGG + chr1_3:3533573-3533592 None:intergenic 65.0%
CACGGACACGGGACACGACA+CGG + chr1_3:3533579-3533598 None:intergenic 65.0%
ACGGACTCGGACACGGACAC+GGG + chr1_3:3533590-3533609 None:intergenic 65.0%
CACGGACTCGGACACGGACA+CGG + chr1_3:3533591-3533610 None:intergenic 65.0%
CACAAGAGGGACCACGGGGA+CGG - chr1_3:3537126-3537145 Msa0097690:intron 65.0%
TTCTCCTGGAACCGTCCCCG+TGG + chr1_3:3537140-3537159 None:intergenic 65.0%
GGGGACGGTTCCAGGAGAAC+TGG - chr1_3:3537141-3537160 Msa0097690:intron 65.0%
GAGATCCGCCGTGTCCGACG+CGG - chr1_3:3532808-3532827 Msa0097690:intron 70.0%
CGTCCGTGTCGGAACCGCGT+CGG + chr1_3:3532825-3532844 None:intergenic 70.0%
! CGCCGGAAAAGGTGCGGTGG+TGG + chr1_3:3533044-3533063 None:intergenic 70.0%
AAGGAAGCAGACGGCGGCGC+CGG + chr1_3:3533061-3533080 None:intergenic 70.0%
TGGCTCCCCTTGCCACCCCC+TGG - chr1_3:3522820-3522839 Msa0097690:three_prime_UTR 75.0%
CGGAGCCAGGGGGTGGCAAG+GGG + chr1_3:3522828-3522847 None:intergenic 75.0%
GCGGAGCCAGGGGGTGGCAA+GGG + chr1_3:3522829-3522848 None:intergenic 75.0%
! ACAGTGGCGGAGCCAGGGGG+TGG + chr1_3:3522835-3522854 None:intergenic 75.0%
CGGAACCGCGTCGGACACGG+CGG + chr1_3:3532816-3532835 None:intergenic 75.0%
! CGGCGCCGGAAAAGGTGCGG+TGG + chr1_3:3533047-3533066 None:intergenic 75.0%
! CGGCGGCGCCGGAAAAGGTG+CGG + chr1_3:3533050-3533069 None:intergenic 75.0%
! GCAGACGGCGGCGCCGGAAA+AGG + chr1_3:3533055-3533074 None:intergenic 75.0%
GGGACCACGGGGACGGTTCC+AGG - chr1_3:3537133-3537152 Msa0097690:intron 75.0%
! GGCGGAGCCAGGGGGTGGCA+AGG + chr1_3:3522830-3522849 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3522631 3537552 3522631 ID=Msa0097690;Name=Msa0097690
chr1_3 mRNA 3522631 3537552 3522631 ID=Msa0097690-mRNA-1;Parent=Msa0097690;Name=Msa0097690-mRNA-1;_AED=0.18;_eAED=0.18;_QI=187|0.96|1|1|0.96|0.92|26|337|936
chr1_3 exon 3522631 3523102 3522631 ID=Msa0097690-mRNA-1:exon:1114;Parent=Msa0097690-mRNA-1
chr1_3 exon 3523199 3523504 3523199 ID=Msa0097690-mRNA-1:exon:1113;Parent=Msa0097690-mRNA-1
chr1_3 exon 3523891 3523993 3523891 ID=Msa0097690-mRNA-1:exon:1112;Parent=Msa0097690-mRNA-1
chr1_3 exon 3524102 3524166 3524102 ID=Msa0097690-mRNA-1:exon:1111;Parent=Msa0097690-mRNA-1
chr1_3 exon 3524258 3524365 3524258 ID=Msa0097690-mRNA-1:exon:1110;Parent=Msa0097690-mRNA-1
chr1_3 exon 3525213 3525305 3525213 ID=Msa0097690-mRNA-1:exon:1109;Parent=Msa0097690-mRNA-1
chr1_3 exon 3525399 3525446 3525399 ID=Msa0097690-mRNA-1:exon:1108;Parent=Msa0097690-mRNA-1
chr1_3 exon 3525929 3526027 3525929 ID=Msa0097690-mRNA-1:exon:1107;Parent=Msa0097690-mRNA-1
chr1_3 exon 3526127 3526243 3526127 ID=Msa0097690-mRNA-1:exon:1106;Parent=Msa0097690-mRNA-1
chr1_3 exon 3526324 3526377 3526324 ID=Msa0097690-mRNA-1:exon:1105;Parent=Msa0097690-mRNA-1
chr1_3 exon 3528206 3528286 3528206 ID=Msa0097690-mRNA-1:exon:1104;Parent=Msa0097690-mRNA-1
chr1_3 exon 3530521 3530626 3530521 ID=Msa0097690-mRNA-1:exon:1103;Parent=Msa0097690-mRNA-1
chr1_3 exon 3530725 3530759 3530725 ID=Msa0097690-mRNA-1:exon:1102;Parent=Msa0097690-mRNA-1
chr1_3 exon 3530864 3530950 3530864 ID=Msa0097690-mRNA-1:exon:1101;Parent=Msa0097690-mRNA-1
chr1_3 exon 3531088 3531165 3531088 ID=Msa0097690-mRNA-1:exon:1100;Parent=Msa0097690-mRNA-1
chr1_3 exon 3531244 3531312 3531244 ID=Msa0097690-mRNA-1:exon:1099;Parent=Msa0097690-mRNA-1
chr1_3 exon 3531428 3531526 3531428 ID=Msa0097690-mRNA-1:exon:1098;Parent=Msa0097690-mRNA-1
chr1_3 exon 3531922 3531985 3531922 ID=Msa0097690-mRNA-1:exon:1097;Parent=Msa0097690-mRNA-1
chr1_3 exon 3532096 3532457 3532096 ID=Msa0097690-mRNA-1:exon:1096;Parent=Msa0097690-mRNA-1
chr1_3 exon 3532542 3532599 3532542 ID=Msa0097690-mRNA-1:exon:1095;Parent=Msa0097690-mRNA-1
chr1_3 exon 3532721 3532773 3532721 ID=Msa0097690-mRNA-1:exon:1094;Parent=Msa0097690-mRNA-1
chr1_3 exon 3533523 3533592 3533523 ID=Msa0097690-mRNA-1:exon:1093;Parent=Msa0097690-mRNA-1
chr1_3 exon 3533751 3533818 3533751 ID=Msa0097690-mRNA-1:exon:1092;Parent=Msa0097690-mRNA-1
chr1_3 exon 3535736 3535903 3535736 ID=Msa0097690-mRNA-1:exon:1091;Parent=Msa0097690-mRNA-1
chr1_3 exon 3536006 3536335 3536006 ID=Msa0097690-mRNA-1:exon:1090;Parent=Msa0097690-mRNA-1
chr1_3 exon 3537411 3537552 3537411 ID=Msa0097690-mRNA-1:exon:1089;Parent=Msa0097690-mRNA-1
chr1_3 five_prime_UTR 3537411 3537552 3537411 ID=Msa0097690-mRNA-1:five_prime_utr;Parent=Msa0097690-mRNA-1
chr1_3 five_prime_UTR 3536291 3536335 3536291 ID=Msa0097690-mRNA-1:five_prime_utr;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3536006 3536290 3536006 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3535736 3535903 3535736 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3533751 3533818 3533751 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3533523 3533592 3533523 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3532721 3532773 3532721 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3532542 3532599 3532542 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3532096 3532457 3532096 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3531922 3531985 3531922 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3531428 3531526 3531428 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3531244 3531312 3531244 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3531088 3531165 3531088 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3530864 3530950 3530864 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3530725 3530759 3530725 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3530521 3530626 3530521 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3528206 3528286 3528206 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3526324 3526377 3526324 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3526127 3526243 3526127 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3525929 3526027 3525929 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3525399 3525446 3525399 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3525213 3525305 3525213 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3524258 3524365 3524258 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3524102 3524166 3524102 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3523891 3523993 3523891 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3523199 3523504 3523199 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 CDS 3522968 3523102 3522968 ID=Msa0097690-mRNA-1:cds;Parent=Msa0097690-mRNA-1
chr1_3 three_prime_UTR 3522631 3522967 3522631 ID=Msa0097690-mRNA-1:three_prime_utr;Parent=Msa0097690-mRNA-1
Gene Sequence

>Msa0097690

ATGACTTCACAACAATTCGGACATGCCGTTCCTTCATCTAATGTCGGGATGCCTGCTATTCAAGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGGCTCCAAGACAAATTCAGCCCGGTCATCCTGTTTCATCATCACAGGGTATACCTATGCCATATATTCAAACAAACAGGCCACTGACATCTGTTCCACAACATGCACAGCAAGCTGTTCCTCACATAAACAATCATATGCATGGCTTGCCTGTTTCTGGAGCACCTCCTCAATCTCTATACACTTTCACACCATCTTATGGTCAGGCATTGCCCCAATACCAGCATCCGCCTCAAATGCATGCACCTCCTGCCGGACAACCTTGGTCGTCCTCAGTACCTCAGAGTGCTGCAGCTGTAACGTCTGTACAGCCGGCTGGAGTTCAATCATCTGGTACTGCATCAAATGATGCTGCAACTAATACCACTAGCAACAACTCTGCATCTGATTGGCAAGAGCATACTGCTGGTGATGGGAGAAGATATTACTACAACAAGAGTACAAGGCAATCTAGTTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCTGATGCATCAACTGTTTGGAAAGAGTTCACTTCTTCAGAGGGAAGAAAGTATTATTACAACAAGGTTACTCAGCAATCAGTATGGACAATACCAGAAGAACTCAAGTTGGCCCGTGAGCAGGCACATAAAACTATTAGCCAGGGAATGGTGTCAGAAACAAGTGATACATCCAATGCTGCTGCCTCCTCTGCTGCAACATCAACTCCACCAGCTAATGCAGCTAGCTCCAACACTTTGAGACCTAATGGTCTTGCTTCAAGCCCATCTTCTGTTACACCAGTTGTTGCCACTGATAATCAACGACCAGTTTCTGGATTATCAGTGGTCTCTGTTTCCCATTCTGTCGTTACTTCAAGCACCATAGGAGTCGAACCAAGCACTGTTGTAACTGTGAGCACTGCACCTACAGCAGTTGCAGGAAGCTTAGGAGTAGTAGCCAACTCACTTGATTCAAAAATTCCATCCATTGTTGAAAATCAAGTAACTCACGATTCTACTTCTGTCAATGGAGCACCTCTTCAAGATATGGAGGAAGCCAAAAAAGGAGTTCCTGTGGTTGGACAAACTAATGTGACTCCTTCAGAGGAGAAAACCAATGATGGTGAAACTTTGGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTTTGGAATCTGTGAATGTTCATTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAATGATAAAAGATATAATGCCCTGAAAACACTTGGTGAGCGAAAACAAGCTTTCAACGAGTATTTGGGTCAAAGGAAGAAGCTAGAGGCTGAAGAAAGGCGTATAAAGCAGAAAAAAGCCCGCGAAGAATTCACAAAGATGTTAGAAGAGTGCAAGGAGCTAACATCATCCACAAGATGGAGCAAAGCTATAAGTATGCTTGAAAATGATGAACGATTCAATGCTGTTGAAAGAGTAAGAGATCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAATTTAGCAGAATATAGGAAATTTCTGGAGTCCTGTGATTTTGTGAAGGACTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAAAAAAGGATACAGAAGGAACGAGTCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTAGAAGAACATATTGCTGATGGAGTTCTTACTGCTAAAACACAGTGGCGAGATTATTGCTTGAAGGTGAAAGAGTTGCCTCAATATCAAGCTGTTGCATCAAATACATCCGGTTCTACTCCAAAAGATTTATTTGAGGATGTCTTTGAAAATCTTGAAAAGCAGTATCATGAAGACAAGACACTCATAAAAGATATACTTAAGTCGGGCAAGATCACCGTAGCGACTACATCAGTATTTGAGGACTTCAAGTCTGCTGTATCAGAAGAAGCTACTTGCAAAACAATATCGGAGATCAATTTGAAGCTTTTATTTGAAGAGTTATTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGATGACTTTACTAACTTATTATATACACTCAAGGATATTATTACTTCTTCAACATGGGAGGAATGCAAGGCACTTTTTGAGGACACACAAGAATACATTTCAATTGGAGATGAAAGCTATAGTAAAGAAATTTTTGAGGAATACATTACATACTTGAAGGAAAAAGCTAAAGAGAAGGAACGTAAGCGTGAAGAAGAAAAGGCCAAAAAGGAGAAAGAAAGAGAAGAGAAAGAAAAACGTAAAGAGAAGGAGAAAAAAGAGAAGGAAAGAGAACGTGAGAAAGAAAAATCAAAAGAACGACATAAGAAAGATGAATCAGATAGTGATAATCAAGACATGACTGACAGCCATGGTTATAGAGAGGAGAAGAAAAAAGAAAAGGATAAAGAGAGAAAACATCGAAGAAGGCATCAGAGCAGTATGGAGGATGTGGATTCTGAAAAAGATGAGAAGGAAGAGTCTAGAAAATCGCGAAGACATGGAAGTGACCGCAAGAAGTCTAGGAAGCATGCAAACTCTCCTGAGTCAGACAATGAAGGTAGGCATAAAAGACACAAGAGGGACCACGGGGACGGTTCCAGGAGAACTGGATGGAATGAGGAGCTTGAAGATGGGGAGCTTGGCGATGATGCAGAGGTTTAG
Protein sequence

>Msa0097690

MTSQQFGHAVPSSNVGMPAIQGQQLQYSQQMQQLAPRQIQPGHPVSSSQGIPMPYIQTNRPLTSVPQHAQQAVPHINNHMHGLPVSGAPPQSLYTFTPSYGQALPQYQHPPQMHAPPAGQPWSSSVPQSAAAVTSVQPAGVQSSGTASNDAATNTTSNNSASDWQEHTAGDGRRYYYNKSTRQSSWEKPLELMSPLERADASTVWKEFTSSEGRKYYYNKVTQQSVWTIPEELKLAREQAHKTISQGMVSETSDTSNAAASSAATSTPPANAASSNTLRPNGLASSPSSVTPVVATDNQRPVSGLSVVSVSHSVVTSSTIGVEPSTVVTVSTAPTAVAGSLGVVANSLDSKIPSIVENQVTHDSTSVNGAPLQDMEEAKKGVPVVGQTNVTPSEEKTNDGETLVYANKLEAKNAFKALLESVNVHSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIKQKKAREEFTKMLEECKELTSSTRWSKAISMLENDERFNAVERVRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKDYIRDLEKEEEEQKRIQKERVRRGERKNRDAFRKLLEEHIADGVLTAKTQWRDYCLKVKELPQYQAVASNTSGSTPKDLFEDVFENLEKQYHEDKTLIKDILKSGKITVATTSVFEDFKSAVSEEATCKTISEINLKLLFEELLERAKEKEEKEAKKRQRLADDFTNLLYTLKDIITSSTWEECKALFEDTQEYISIGDESYSKEIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKEREREKEKSKERHKKDESDSDNQDMTDSHGYREEKKKEKDKERKHRRRHQSSMEDVDSEKDEKEESRKSRRHGSDRKKSRKHANSPESDNEGRHKRHKRDHGDGSRRTGWNEELEDGELGDDAEV*