AlfalfaGEDB | Msa1413610

M. sativa cultivar zhongmu-4 / Msa1413610

KEGG: K10884
GO: GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363
PFAM: PF03731.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413610	sp\|Q9FQ08\|KU70_ARATH	59.105	626	215	7	114	707	5	621	0.0	737

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413610	G7ICA9	92.754	621	14	4	118	707	14	634	0.0	1168

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002710	Msa1413610	0.805997	1.018709e-49	-8.615850e-47
Msa0003400	Msa1413610	0.810090	1.369904e-50	-8.615850e-47
Msa0003890	Msa1413610	0.810330	1.216073e-50	-8.615850e-47
Msa0006110	Msa1413610	0.835067	2.082405e-56	-8.615850e-47
Msa0007990	Msa1413610	0.803267	3.781617e-49	-8.615850e-47
Msa0011500	Msa1413610	0.811011	8.666130e-51	-8.615850e-47
Msa0014570	Msa1413610	0.832710	8.092494e-56	-8.615850e-47
Msa0014710	Msa1413610	0.814254	1.691877e-51	-8.615850e-47
Msa0015670	Msa1413610	0.812916	3.331351e-51	-8.615850e-47
Msa0025330	Msa1413610	0.806234	9.079928e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413610	MtrunA17_Chr1g0213891	92.754	621	14	4	118	707	14	634	0.0	1168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413610	AT1G16970.1	59.105	626	215	7	114	707	5	621	0.0	737

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Find 150 sgRNAs with CRISPR-Local

Find 1106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAGGCTTACACGTTTC+TGG	0.155829	tig0024042:+40841	None:intergenic
AAGAACAGTAACCTCGTCAC+TGG	0.498647	tig0024042:+34500	None:intergenic
AAGAATTTACAAGACCTAAA+TGG	0.378666	tig0024042:-39943	Msa1413610:CDS
AAGAGTGTGAGAACTATGAT+TGG	0.546419	tig0024042:-27594	Msa1413610:CDS
AAGATGGACGGAGAGGAAGG+TGG	0.549432	tig0024042:-42120	Msa1413610:CDS
AAGCCTTAGATATAATGATG+AGG	0.666693	tig0024042:-41987	Msa1413610:CDS
AATCAAAGTCAAGCTACTTC+TGG	0.416939	tig0024042:-42034	Msa1413610:CDS
AATCAAGTTACTTCTTGTGA+CGG	0.564657	tig0024042:-41941	Msa1413610:intron
AATCACCTGCAGACCAGGAG+TGG	0.644588	tig0024042:-27743	Msa1413610:intron
AATCTACAAGACAAACAGCA+GGG	0.690328	tig0024042:-27136	Msa1413610:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCCTTAGATATAATGATG+AGG	-	tig0024042:27083-27102	Msa1413610:three_prime_UTR	30.0%
CAACCTCATCATTATATCTA+AGG	+	tig0024042:27089-27108	None:intergenic	30.0%
AATCAAGTTACTTCTTGTGA+CGG	-	tig0024042:27129-27148	Msa1413610:three_prime_UTR	30.0%
GTGAAAATTCGTAGCATAAT+TGG	+	tig0024042:27467-27486	None:intergenic	30.0%
CTTTACTAAATAAACCAACC+CGG	-	tig0024042:27855-27874	Msa1413610:intron	30.0%
TTGTCAATTTCACAGAACAA+TGG	-	tig0024042:28056-28075	Msa1413610:intron	30.0%
TGTCAATTTCACAGAACAAT+GGG	-	tig0024042:28057-28076	Msa1413610:intron	30.0%
CTTCTTCATAACAACGAATT+TGG	+	tig0024042:28100-28119	None:intergenic	30.0%
GGAATGAAAAGTAAGAAGAA+AGG	+	tig0024042:28247-28266	None:intergenic	30.0%
TTTATCATTCCAATCCTTTG+TGG	+	tig0024042:28437-28456	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0024042	gene	26953	42139	26953	ID=Msa1413610;Name=Msa1413610
tig0024042	mRNA	26953	42139	26953	ID=Msa1413610-mRNA-1;Parent=Msa1413610;Name=Msa1413610-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.64\|0.55\|0.88\|0.70\|0.72\|18\|313\|707
tig0024042	exon	26953	27379	26953	ID=Msa1413610-mRNA-1:exon:21358;Parent=Msa1413610-mRNA-1
tig0024042	exon	27570	27753	27570	ID=Msa1413610-mRNA-1:exon:21357;Parent=Msa1413610-mRNA-1
tig0024042	exon	28219	28300	28219	ID=Msa1413610-mRNA-1:exon:21356;Parent=Msa1413610-mRNA-1
tig0024042	exon	32619	32739	32619	ID=Msa1413610-mRNA-1:exon:21355;Parent=Msa1413610-mRNA-1
tig0024042	exon	32854	32946	32854	ID=Msa1413610-mRNA-1:exon:21354;Parent=Msa1413610-mRNA-1
tig0024042	exon	33102	33162	33102	ID=Msa1413610-mRNA-1:exon:21353;Parent=Msa1413610-mRNA-1
tig0024042	exon	33843	33904	33843	ID=Msa1413610-mRNA-1:exon:21352;Parent=Msa1413610-mRNA-1
tig0024042	exon	34512	34659	34512	ID=Msa1413610-mRNA-1:exon:21351;Parent=Msa1413610-mRNA-1
tig0024042	exon	37151	37227	37151	ID=Msa1413610-mRNA-1:exon:21350;Parent=Msa1413610-mRNA-1
tig0024042	exon	38554	38668	38554	ID=Msa1413610-mRNA-1:exon:21349;Parent=Msa1413610-mRNA-1
tig0024042	exon	39408	39466	39408	ID=Msa1413610-mRNA-1:exon:21348;Parent=Msa1413610-mRNA-1
tig0024042	exon	39546	39748	39546	ID=Msa1413610-mRNA-1:exon:21347;Parent=Msa1413610-mRNA-1
tig0024042	exon	39755	39974	39755	ID=Msa1413610-mRNA-1:exon:21346;Parent=Msa1413610-mRNA-1
tig0024042	exon	40070	40304	40070	ID=Msa1413610-mRNA-1:exon:21345;Parent=Msa1413610-mRNA-1
tig0024042	exon	40854	40919	40854	ID=Msa1413610-mRNA-1:exon:21344;Parent=Msa1413610-mRNA-1
tig0024042	exon	41014	41092	41014	ID=Msa1413610-mRNA-1:exon:21343;Parent=Msa1413610-mRNA-1
tig0024042	exon	41864	41870	41864	ID=Msa1413610-mRNA-1:exon:21342;Parent=Msa1413610-mRNA-1
tig0024042	exon	41942	42139	41942	ID=Msa1413610-mRNA-1:exon:21341;Parent=Msa1413610-mRNA-1
tig0024042	CDS	41942	42139	41942	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	41864	41870	41864	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	41014	41092	41014	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	40854	40919	40854	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	40070	40304	40070	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	39755	39974	39755	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	39546	39748	39546	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	39408	39466	39408	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	38554	38668	38554	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	37151	37227	37151	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	34512	34659	34512	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	33843	33904	33843	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	33102	33162	33102	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	32854	32946	32854	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	32619	32739	32619	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	28219	28300	28219	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	27570	27753	27570	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	CDS	27266	27379	27266	ID=Msa1413610-mRNA-1:cds;Parent=Msa1413610-mRNA-1
tig0024042	three_prime_UTR	26953	27265	26953	ID=Msa1413610-mRNA-1:three_prime_utr;Parent=Msa1413610-mRNA-1

Gene Sequence

>Msa1413610

ATGGACGGAGAGGAAGGTGGAGAGAGGAGAAGGGTTGGTGGTGGTGAATTTTGGGTTAATTTTCTATTAATAGTAGTAGGGGAAATCAAAGTCAAGCTACTTCTGGCGGTGATTCTAATGATTCTTCATCAAGCCTTAGATATAATGATGAGGTTGAAAATTAAGATCAAAATCAAAATCAAGTTACTTCTTGTGACGAATTTTGAGGATAGCGAAACCTCGGCAAGTGTTCACGTTTACAGTGAAGCTACAACTACTAGCTTGTCAATTTCACAGAACAATGGCTATAAAGAAGCGGTTTTGAACCCAGAAAAGAAGAACACTCTTAAAGAAAAGTTGCCCAGAAACGTAGACGATGAAGACGATCCTGATGGTCAAAATTGTTTCCAAAATAATAACGATTCCAACAAAGAATTTGTGGTTTACCTTGTCGATGCATCTCCTAACATGTTCGTTACCACTTCTTCTTCTGAATCTGAAGAAGAATCTCACTTCCAGATTGCCCTTGGCTGTATCTCTGACTCGCTCAAAGCAATGATCATTAACAAATCCTTAGATCAAATTGCCATATGCTTTTTTAACACTAAAGAAAAGAAGAATTTACAAGACCTAAATGGTGTTTACGTATTTCATGTTGCTGAAGAAGGAGCCGACTATCTTGACAGACCAACAGCTAAACTTATCAAACAATTTGATAATCTCCATCAATCTTTTTCCAAAAACATTGGAAGCCAGCATGGTGTCATGTCCGGAAGTAGAGAAAATCCTCTCTACAATGCTATCTGGGTAGCTCAAGCACTTCTTCGCTCTGCAAAGACAATCGATAAACGCATACTTTTGTTCACAAATCAAGATGATCCTTTTGGCTCTCTCAAAGGACCTTTCAAATCCGACATGACAAGAACAACACTGCAGAGAGCTAAAGACACACAGGATCTTGGCATTACAATTGAACTTCTTCCCCTCAGTTTCCCTGATCAAACGTTTGACGTATCTAAATTCTATGCTGATTTGATTGGCTTGGAAGGCGATGATCTTGTTAACTTTGTAGCCTCAGCAGGAAACAAATTGGAGGATATGAAAGCTCAGTTAAGAAAGCGCATGTTTTCGAAACGCAGAGTCAACAAATTTAAATTCACAATAGTTGATGGGCTATCAGTTGAACTTAATTCATATGCTTTAAGTGAAAGAACTTTCATTTGTGCTGATACCGGTGCATTGATAGAAGAATCTACCAGACGGTTTCATCCTTATAAAAACCAGAATATTATATTTTCTATGAAGGAGCTATCTGAAATTAAGAGAGTTGCTACCGGACATCTACATCTTTTAGGGTTCAAGCCACTAAGCTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCCAGTGACGAGGGTACAGATGCTAGCATGTGCACCTTCATTGCCCTTCATAGGTCCATGGTACAGCTCAACCGTTTTGCAGTTGCATTTAGTGGTAGTTCATCTCGACCTCAATTGGTCGCCCTTATTGCGCAGGATGAGGTTATCCAATCTGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCGTATTCTGATGACATTAGACTTGTTGAAGAGCGTTATTCAGATACTAGTGGGGTGGTGACTAAAGCAAGTGATGATCAAATAAAAAGGGCAGCTGATTTAATCAAGCGTTTGGACTTGAAAGATTTTTCTGTATTCCAAATCACCAACCCTGTATTGCAGGCATTAGCTCTGGAAGAGGATGATATTCCTGAAATCAAAGATGAAACATTACCTGATGAGGAAGGCTTGTCCAGACCAGGAGTGGTCAGGGCATTAGAAGAATTCAAGTCCTCTGTATACGGGGAGAATTATGATGAGGAAAGTGAGCTTGGCACTGGAAAGCCAACTGAAGCCTCCAAGAAACGAAAAGCGCATGCTGAGTTTGCTATGAAAGAGTGTGAGAACTATGATTGGGGTGAGCTCGCTGATACTGGAAAGTTGAAGGATTTGACAGTGGTGGAGTTGAAATATTATCTTACAGGACACAATCTTCCTGTTTCTGGGAAGAAGGAAGCTTTAGTTAGCCGAATATTAACTCATATGGGAAAATGA

Protein sequence

>Msa1413610

MDGEEGGERRRVGGGEFWVNFLLIVVGEIKVKLLLAVILMILHQALDIMMRLKIKIKIKIKLLLVTNFEDSETSASVHVYSEATTTSLSISQNNGYKEAVLNPEKKNTLKEKLPRNVDDEDDPDGQNCFQNNNDSNKEFVVYLVDASPNMFVTTSSSESEEESHFQIALGCISDSLKAMIINKSLDQIAICFFNTKEKKNLQDLNGVYVFHVAEEGADYLDRPTAKLIKQFDNLHQSFSKNIGSQHGVMSGSRENPLYNAIWVAQALLRSAKTIDKRILLFTNQDDPFGSLKGPFKSDMTRTTLQRAKDTQDLGITIELLPLSFPDQTFDVSKFYADLIGLEGDDLVNFVASAGNKLEDMKAQLRKRMFSKRRVNKFKFTIVDGLSVELNSYALSERTFICADTGALIEESTRRFHPYKNQNIIFSMKELSEIKRVATGHLHLLGFKPLSCLRDYYNLKPSTFLYPSDEGTDASMCTFIALHRSMVQLNRFAVAFSGSSSRPQLVALIAQDEVIQSGGQIEPPGMHMIYLPYSDDIRLVEERYSDTSGVVTKASDDQIKRAADLIKRLDLKDFSVFQITNPVLQALALEEDDIPEIKDETLPDEEGLSRPGVVRALEEFKSSVYGENYDEESELGTGKPTEASKKRKAHAEFAMKECENYDWGELADTGKLKDLTVVELKYYLTGHNLPVSGKKEALVSRILTHMGK*